Query psy14943
Match_columns 328
No_of_seqs 231 out of 667
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 16:26:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00182 TBOX T-box DNA binding 100.0 8.5E-73 1.8E-77 504.3 16.9 181 51-242 1-186 (188)
2 smart00425 TBOX Domain first f 100.0 7.2E-70 1.6E-74 487.0 18.0 181 52-243 1-188 (190)
3 KOG3586|consensus 100.0 1.9E-69 4.2E-74 514.4 15.4 186 49-245 77-274 (437)
4 PF00907 T-box: T-box; InterP 100.0 6.9E-65 1.5E-69 453.6 11.3 177 53-240 1-183 (184)
5 KOG3585|consensus 100.0 1.4E-63 3.1E-68 479.8 17.3 192 47-249 20-217 (328)
6 KOG3586|consensus 99.9 2E-24 4.4E-29 206.7 4.2 71 251-328 136-206 (437)
7 cd00182 TBOX T-box DNA binding 99.8 2E-20 4.4E-25 167.4 4.5 69 253-328 58-126 (188)
8 smart00425 TBOX Domain first f 99.8 1.4E-19 3E-24 162.5 4.9 69 253-328 57-127 (190)
9 KOG3585|consensus 99.7 2.7E-18 5.8E-23 166.0 4.9 69 253-328 81-150 (328)
10 PF00907 T-box: T-box; InterP 99.4 1.5E-14 3.4E-19 129.1 1.1 69 253-328 56-124 (184)
11 PF00041 fn3: Fibronectin type 57.4 17 0.00037 26.4 3.9 22 86-107 57-78 (85)
12 cd08666 APC10-HECTD3 APC10-lik 53.3 70 0.0015 27.4 7.3 67 130-206 28-102 (134)
13 PF04775 Bile_Hydr_Trans: Acyl 47.7 26 0.00056 29.4 3.8 29 85-113 5-33 (126)
14 cd08664 APC10-HERC2 APC10-like 32.1 1.4E+02 0.003 26.2 5.9 60 131-200 47-113 (152)
15 smart00060 FN3 Fibronectin typ 31.9 62 0.0013 21.9 3.3 23 84-106 56-78 (83)
16 cd00063 FN3 Fibronectin type 3 30.0 53 0.0012 23.1 2.7 24 83-106 55-78 (93)
17 PF09294 Interfer-bind: Interf 29.2 73 0.0016 24.8 3.6 21 86-106 68-88 (106)
18 cd02859 AMPKbeta_GBD_like AMP- 25.5 92 0.002 23.6 3.4 25 98-123 37-62 (79)
19 PF11012 DUF2850: Protein of u 21.4 3.6E+02 0.0077 21.0 5.9 64 117-181 4-78 (79)
No 1
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=100.00 E-value=8.5e-73 Score=504.25 Aligned_cols=181 Identities=52% Similarity=0.968 Sum_probs=173.8
Q ss_pred CCEEEecCchhHhhhcCCCCeeEEEeCCCcCCCeeEEEeeCCCCCCceeEEEEEEEccCcceEEeCCeEEECCCCCCCCC
Q psy14943 51 NPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPM 130 (328)
Q Consensus 51 ~I~V~L~n~~lW~~F~~~~~EMIVtk~GRrmFP~l~~~vsGLdP~~~Y~v~l~~~~~D~~ryk~~~~~W~~~~~~~~~~~ 130 (328)
+|+|+|+|++||++||+++|||||||+||||||.|+|+|+||||+++|.|.|+|+++|++||||.+|+|+++|++|+..+
T Consensus 1 ~i~v~L~~~~lW~~f~~~~tEMIITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~~~~W~~~g~~e~~~~ 80 (188)
T cd00182 1 GIKVSLENRELWKKFHELGTEMIITKSGRRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAEPHLP 80 (188)
T ss_pred CcEEEEcCHHHHHhhcccCcEEEEecCCcccccceEEEEeCCCcccceEEEEEEEEcCCcEEEecCCcEeEcCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEcCCCcchhhhhhcCeeeeeeEEeeeCC-CCCCceEeccccccccEEEEEEeCCcc----ceEEEeecCcceEEEe
Q psy14943 131 NAMYLHPESPNFGEHWMKDCVSFAKVKLTNHS-NGSGQIMLNSLHKYEPRIHLVKVATEQ----QIIKTFPFPETQFIAV 205 (328)
Q Consensus 131 ~~~~~Hp~~~~~G~~WM~~~vsF~klkiTN~~-~~~~~I~L~s~hKY~PvL~I~~~~~~~----~~~~~f~fpeTqFIaV 205 (328)
.++|+|||||++|++||+++|+|+++||||+. +..++|.|+|||||+|||||+++++.. ..+.+|+||||+||||
T Consensus 81 ~~~~~HPdsp~tG~~wM~~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~~~~~~~~~~f~F~eT~FiAV 160 (188)
T cd00182 81 PRVYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSSPFSWRLVQTFSFPETEFIAV 160 (188)
T ss_pred CceEECCCCCcCHHHHhhCccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCccccccccEEEECCCeEEEEE
Confidence 99999999999999999999999999999997 456799999999999999999997753 4689999999999999
Q ss_pred cccccceeeeeecccCccccccccccCCcchhhcccc
Q psy14943 206 TAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAK 242 (328)
Q Consensus 206 T~~~~~~fiav~~YqN~~I~~LKi~~NpfAkg~~~~~ 242 (328)
|+ |||++|++|||++|||||||||..
T Consensus 161 Ta-----------YqN~~It~lKi~~NpfAkgfr~~~ 186 (188)
T cd00182 161 TA-----------YQNQEITQLKIDNNPFAKGFRDNG 186 (188)
T ss_pred Ee-----------ecCHhHhhhhhcCCcccccccccC
Confidence 99 999999999999999999999964
No 2
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=100.00 E-value=7.2e-70 Score=487.02 Aligned_cols=181 Identities=54% Similarity=0.948 Sum_probs=171.1
Q ss_pred CEEEecCchhHhhhcCCCCeeEEEeCCCcCCCeeEEEeeCCCCCCceeEEEEEEEccCcceEEeCCeEEECCCCCCCCCC
Q psy14943 52 PQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPMN 131 (328)
Q Consensus 52 I~V~L~n~~lW~~F~~~~~EMIVtk~GRrmFP~l~~~vsGLdP~~~Y~v~l~~~~~D~~ryk~~~~~W~~~~~~~~~~~~ 131 (328)
|+|+|+|++||++||+++|||||||+||||||.|+|+|+||||+++|.|.|+|+++|++||+|.+|+|+++|++++..+.
T Consensus 1 i~v~L~~~~lW~~f~~~~tEMIVTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~g~~e~~~~~ 80 (190)
T smart00425 1 IKVSLEDKELWRKFHELGTEMIVTKSGRRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEPHMPS 80 (190)
T ss_pred CEEEEcCHHHHHhhCccCcEEEEecCCceeCCeeEEEEeCCCccCcEEEEEEEEEccCcEEEecCCcEEEcCCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred ceEEcCCCcchhhhhhcCeeeeeeEEeeeCCCC-CCce--EeccccccccEEEEEEeCCcc----ceEEEeecCcceEEE
Q psy14943 132 AMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNG-SGQI--MLNSLHKYEPRIHLVKVATEQ----QIIKTFPFPETQFIA 204 (328)
Q Consensus 132 ~~~~Hp~~~~~G~~WM~~~vsF~klkiTN~~~~-~~~I--~L~s~hKY~PvL~I~~~~~~~----~~~~~f~fpeTqFIa 204 (328)
++|+|||||++|++||+++|+|+++||||+..+ +++| .|+|||||+|||||+++++.. ..+.+|+||||+|||
T Consensus 81 ~~~~Hpdsp~tG~~wM~~~v~F~kvKlTN~~~~~~~~i~i~L~SmhkY~P~l~I~~~~~~~~~~~~~~~~f~F~eT~Fia 160 (190)
T smart00425 81 RVYVHPDSPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDISKEILSQFKTFVFPETQFIA 160 (190)
T ss_pred ceEECCCCccCHHHHhhCcccccccceeccccccCCcEeeeeccCceEeeEEEEEEeCCcccccccceeEEECCceEEEE
Confidence 999999999999999999999999999999654 4565 999999999999999997652 234799999999999
Q ss_pred ecccccceeeeeecccCccccccccccCCcchhhccccc
Q psy14943 205 VTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKE 243 (328)
Q Consensus 205 VT~~~~~~fiav~~YqN~~I~~LKi~~NpfAkg~~~~~~ 243 (328)
||+ |||++|++|||++||||||||+...
T Consensus 161 VTa-----------YqN~~it~lKi~~NpfAkgfr~~~~ 188 (190)
T smart00425 161 VTA-----------YQNQKITKLKIDNNPFAKGFRDQGR 188 (190)
T ss_pred Eee-----------ecccchhhccccCCCCcCccccccC
Confidence 999 9999999999999999999999743
No 3
>KOG3586|consensus
Probab=100.00 E-value=1.9e-69 Score=514.37 Aligned_cols=186 Identities=49% Similarity=0.868 Sum_probs=176.2
Q ss_pred CCCCEEEecCchhHhhhcCCCCeeEEEeCCCcCCCeeEEEeeCCCCCCceeEEEEEEEccCcceEE--eCCeEEECCCCC
Q psy14943 49 YGNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKY--VNGEWVPAGKPE 126 (328)
Q Consensus 49 ~~~I~V~L~n~~lW~~F~~~~~EMIVtk~GRrmFP~l~~~vsGLdP~~~Y~v~l~~~~~D~~ryk~--~~~~W~~~~~~~ 126 (328)
-..|+|.|+.++||++||++||||||||+||||||+++++|+||||.+.|.|.|||++||++|||| +..+|+++||+|
T Consensus 77 ~a~i~~~Le~keLWdrFh~lGTEMIITKsGRRMFPTvrV~~~GldP~a~Y~vlmDvVPvD~KRYRYayH~S~WlvAGkAD 156 (437)
T KOG3586|consen 77 LAPIQVQLETKELWDRFHDLGTEMIITKSGRRMFPTVRVKFSGLDPMADYYVLMDVVPVDSKRYRYAYHSSSWLVAGKAD 156 (437)
T ss_pred ccceEEEeehHHHHHHHHhcCceEEEecccccccceEEEEEecCCcccceEEEEeEEecccceeeeeecccceeeecCCC
Confidence 347999999999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred CCCCCceEEcCCCcchhhhhhcCeeeeeeEEeeeCC-CCCCceEeccccccccEEEEEEeCCc---------cceEEEee
Q psy14943 127 QPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHS-NGSGQIMLNSLHKYEPRIHLVKVATE---------QQIIKTFP 196 (328)
Q Consensus 127 ~~~~~~~~~Hp~~~~~G~~WM~~~vsF~klkiTN~~-~~~~~I~L~s~hKY~PvL~I~~~~~~---------~~~~~~f~ 196 (328)
+..+.|+|+|||+|.+|+.|||+.|||+|+|||||. ++.|+|+|||||||+||+||++++.. .+..++|.
T Consensus 157 p~~p~R~yvHPDSP~sGe~wmkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~~~~~s~~~~~~~e~~kTF~ 236 (437)
T KOG3586|consen 157 PAPPPRVYVHPDSPASGEQWMKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLDPGNDSNKYVEKNEGFKTFV 236 (437)
T ss_pred CCCCCceeeCCCCCCCHHHHHHhhhchheeeccccccccCCcEeeecccccCCceEEEEecCCCCccccccccccceeEe
Confidence 999999999999999999999999999999999996 56789999999999999999999743 23479999
Q ss_pred cCcceEEEecccccceeeeeecccCccccccccccCCcchhhccccccc
Q psy14943 197 FPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKT 245 (328)
Q Consensus 197 fpeTqFIaVT~~~~~~fiav~~YqN~~I~~LKi~~NpfAkg~~~~~~~~ 245 (328)
||||+|+|||| |||+.||+|||+.|||||||||....+
T Consensus 237 FpET~FtAVTA-----------YQNq~ITkLKI~sNPFAKGFRD~~~~~ 274 (437)
T KOG3586|consen 237 FPETVFTAVTA-----------YQNQRITKLKIESNPFAKGFRDCGRND 274 (437)
T ss_pred ccceeEEEEee-----------cccceeeeeeeccCccccccccCCccC
Confidence 99999999999 999999999999999999999987554
No 4
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=100.00 E-value=6.9e-65 Score=453.60 Aligned_cols=177 Identities=54% Similarity=0.971 Sum_probs=145.0
Q ss_pred EEEecCchhHhhhcCCCCeeEEEeCCCcCCCeeEEEeeCCCCCCceeEEEEEEEccCcceEEeCCeEEECCCCCCCCCCc
Q psy14943 53 QVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPEQPPMNA 132 (328)
Q Consensus 53 ~V~L~n~~lW~~F~~~~~EMIVtk~GRrmFP~l~~~vsGLdP~~~Y~v~l~~~~~D~~ryk~~~~~W~~~~~~~~~~~~~ 132 (328)
+|+|+|++||++||+++||||||+.||+|||.|+|+|+||||++.|+|+|+|+++|++||+|.+|+|++++++++..+.+
T Consensus 1 ~V~L~~~~lW~~f~~~~~EMivt~~GR~~FP~l~y~vsGL~p~~~Y~i~l~~~~~d~~~~k~~~~~W~~~~~~~~~~~~~ 80 (184)
T PF00907_consen 1 QVSLENEELWKKFHELGNEMIVTKNGRRMFPTLEYSVSGLDPDSLYSISLHFERVDNKRYKFSNGKWVPSGKAEPPMPPR 80 (184)
T ss_dssp EEEETTHHHHHHHHHH--EEE-BTT-EE-SS-EEEEEESS-TTSEEEEEEEEEESCSEEEEEETTEEEEEEE---B----
T ss_pred CeECccHHHHHHhccCCCEEEEeecccccccccEEEecCCCCCcceEEEEEEEEecCceeecccccccccccccccccce
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred eEEcCCCcchhhhhhcCeeeeeeEEeeeCCC-CCCceEeccccccccEEEEEEeCCc-----cceEEEeecCcceEEEec
Q psy14943 133 MYLHPESPNFGEHWMKDCVSFAKVKLTNHSN-GSGQIMLNSLHKYEPRIHLVKVATE-----QQIIKTFPFPETQFIAVT 206 (328)
Q Consensus 133 ~~~Hp~~~~~G~~WM~~~vsF~klkiTN~~~-~~~~I~L~s~hKY~PvL~I~~~~~~-----~~~~~~f~fpeTqFIaVT 206 (328)
+++||+|+++|++||+++|+|+++||||+.. .++.|+|+|||||+|||+|+++++. ...+.+|+||+|+|||||
T Consensus 81 ~~~h~~~~~~G~~WM~~~v~F~~vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~~~~~~~~~~~f~f~~t~FIaVT 160 (184)
T PF00907_consen 81 VVIHPDGPQTGSEWMKNGVSFDKVKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNGSPSPNQPVHEFSFPETEFIAVT 160 (184)
T ss_dssp -EE-TT-SEEHHHHHHS-EEETT-EEESSTT-TST-EE--TTEEEEEEEEEEECTTTSCCCSCSSEEEEE-GGG-EEEES
T ss_pred EEEEecCcCCHHHhCcccEEeehhhhhCCCCCcccceEEccccEEEEEEEEEEcCCccccccccceEEeecCcCeEEeec
Confidence 9999999999999999999999999999984 4567999999999999999999876 346899999999999999
Q ss_pred ccccceeeeeecccCccccccccccCCcchhhcc
Q psy14943 207 AYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLD 240 (328)
Q Consensus 207 ~~~~~~fiav~~YqN~~I~~LKi~~NpfAkg~~~ 240 (328)
+ |||++|++|||++|||||||||
T Consensus 161 ~-----------Yqn~~I~~lK~~~Npfak~fr~ 183 (184)
T PF00907_consen 161 A-----------YQNEEIRQLKIDNNPFAKGFRD 183 (184)
T ss_dssp S------------SSHHHHHHHHHH-GGGGGGHH
T ss_pred c-----------cchhhhhhhhhccCCCccccCC
Confidence 9 9999999999999999999998
No 5
>KOG3585|consensus
Probab=100.00 E-value=1.4e-63 Score=479.77 Aligned_cols=192 Identities=49% Similarity=0.888 Sum_probs=179.2
Q ss_pred CCCCCCEEEecCchhHhhhcCCCCeeEEEeCCCcCCCeeEEEeeCCCCCCceeEEEEEEEccCcceEEeCCeEEECCCCC
Q psy14943 47 EAYGNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYVNGEWVPAGKPE 126 (328)
Q Consensus 47 ~~~~~I~V~L~n~~lW~~F~~~~~EMIVtk~GRrmFP~l~~~vsGLdP~~~Y~v~l~~~~~D~~ryk~~~~~W~~~~~~~ 126 (328)
..+..|+|+|++.+||++||+++|||||||.||||||.|+|+|+||||+++|+|+|+|+++|++||+|.+|+|+++|+++
T Consensus 20 ~~~~~~~v~l~~~eLW~~fh~~~~EmiitK~GRrmFP~l~~~VsGLdp~s~Y~i~l~~~~~D~~rykf~ng~W~p~gk~e 99 (328)
T KOG3585|consen 20 GSPIQVKVSLENRELWKKFHEHGTEMIVTKRGRRMFPALKFKVSGLDPNSLYSILLELVPIDDKRYKFNNGKWVPSGKAE 99 (328)
T ss_pred CCCcccEEEEechhHHHhhccCccEEEEecCCceeccccceeeccCCcccceEEEEEEEEccCceeeecCCeeccCCCCC
Confidence 35566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEcCCCcchhhhhhcCeeeeeeEEeeeCCCC-CCc-eEeccccccccEEEEEEeC----CccceEEEeecCcc
Q psy14943 127 QPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNG-SGQ-IMLNSLHKYEPRIHLVKVA----TEQQIIKTFPFPET 200 (328)
Q Consensus 127 ~~~~~~~~~Hp~~~~~G~~WM~~~vsF~klkiTN~~~~-~~~-I~L~s~hKY~PvL~I~~~~----~~~~~~~~f~fpeT 200 (328)
+..+.++++||||++||++||+++|+|++|||||+..+ +++ |+|+|||||+|||||++++ .....+++|+|+||
T Consensus 100 ~~~~~~~~~Hpd~p~TG~~WM~~~V~F~kvKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~~~~~~~~~~~~~~~F~eT 179 (328)
T KOG3585|consen 100 PHVPSKVYVHPDGPATGAHWMSEPVSFDKVKITNNKSDKKGKVIILNSMHKYQPVLHIVELDASLISPEISVQSFKFPET 179 (328)
T ss_pred CCCCceEEEecCCccchHHHhcCCcccceeEeeccccccCCceEeeecccceeeeEEEEEcccccCCCccceeEEEcccc
Confidence 98899999999999999999999999999999998764 456 9999999999999999995 33567899999999
Q ss_pred eEEEecccccceeeeeecccCccccccccccCCcchhhcccccccCccc
Q psy14943 201 QFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYY 249 (328)
Q Consensus 201 qFIaVT~~~~~~fiav~~YqN~~I~~LKi~~NpfAkg~~~~~~~~~~~y 249 (328)
+|||||+ |||++|++|||++||||||||+.......++
T Consensus 180 ~FIaVTa-----------YQn~~it~lKi~~Npfakgfr~~~~~~~~~~ 217 (328)
T KOG3585|consen 180 QFIAVTA-----------YQNQEITKLKIDNNPFAKGFRDNIEGRLCRR 217 (328)
T ss_pred eeEEeee-----------eecceehhhcccCCccccccccccccceeec
Confidence 9999999 9999999999999999999999876654333
No 6
>KOG3586|consensus
Probab=99.89 E-value=2e-24 Score=206.73 Aligned_cols=71 Identities=38% Similarity=0.767 Sum_probs=68.1
Q ss_pred cccccceeeeCCceEeCCCCCCCCCCceecCCCCCccccccccccceeeeEEeccCCCCCCCCCCCCCCCeEeeecCC
Q psy14943 251 QQTTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGMGTQGPVTLEVRHT 328 (328)
Q Consensus 251 ~s~~~rykf~ng~W~~aGkae~~~~~r~~~Hpdsp~~G~~Wm~~~vsF~klKLTNn~~~~~~~~~~~~~~i~l~s~h~ 328 (328)
|+++|||-|++++|++||++|+.++.|+|+|||||++|+.||++.|||+|+|||||. ||++|||||||||+
T Consensus 136 D~KRYRYayH~S~WlvAGkADp~~p~R~yvHPDSP~sGe~wmkqiVSFdK~KLTNNe-------lD~nGHIILNSMHk 206 (437)
T KOG3586|consen 136 DSKRYRYAYHSSSWLVAGKADPAPPPRVYVHPDSPASGEQWMKQIVSFDKLKLTNNE-------LDDNGHIILNSMHK 206 (437)
T ss_pred ccceeeeeecccceeeecCCCCCCCCceeeCCCCCCCHHHHHHhhhchheeeccccc-------cccCCcEeeecccc
Confidence 455779999999999999999999999999999999999999999999999999996 99999999999996
No 7
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=99.80 E-value=2e-20 Score=167.42 Aligned_cols=69 Identities=42% Similarity=0.804 Sum_probs=65.1
Q ss_pred cccceeeeCCceEeCCCCCCCCCCceecCCCCCccccccccccceeeeEEeccCCCCCCCCCCCCCCCeEeeecCC
Q psy14943 253 TTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGMGTQGPVTLEVRHT 328 (328)
Q Consensus 253 ~~~rykf~ng~W~~aGkae~~~~~r~~~Hpdsp~~G~~Wm~~~vsF~klKLTNn~~~~~~~~~~~~~~i~l~s~h~ 328 (328)
|.+||+|.+|+|.++|++|+.++.++|+|||||++|++||+++|+|+||||||+. .+.+|+|+|+|||+
T Consensus 58 D~~Rykf~~~~W~~~g~~e~~~~~~~~~HPdsp~tG~~wM~~~isF~kvKlTN~~-------~~~~~~i~L~SmhK 126 (188)
T cd00182 58 DDHRYKFSGGKWVVAGKAEPHLPPRVYVHPDSPATGAHWMKQPVSFDKLKLTNNT-------LDNNGHIILNSMHK 126 (188)
T ss_pred CCcEEEecCCcEeEcCCCCCCCCCceEECCCCCcCHHHHhhCccccchhhcccCC-------CCCCCEEEEeccce
Confidence 3578899999999999999999999999999999999999999999999999997 67888999999995
No 8
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=99.78 E-value=1.4e-19 Score=162.46 Aligned_cols=69 Identities=45% Similarity=0.794 Sum_probs=64.4
Q ss_pred cccceeeeCCceEeCCCCCCCCCCceecCCCCCccccccccccceeeeEEeccCCCCCCCCCCCCCCCe--EeeecCC
Q psy14943 253 TTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGMGTQGPV--TLEVRHT 328 (328)
Q Consensus 253 ~~~rykf~ng~W~~aGkae~~~~~r~~~Hpdsp~~G~~Wm~~~vsF~klKLTNn~~~~~~~~~~~~~~i--~l~s~h~ 328 (328)
|.+||+|++|+|.++|++|+.++.++|+|||||++|++||+++|+|++|||||+. .+.+|+| +|+|||+
T Consensus 57 d~~rykf~~~~W~~~g~~e~~~~~~~~~Hpdsp~tG~~wM~~~v~F~kvKlTN~~-------~~~~~~i~i~L~Smhk 127 (190)
T smart00425 57 DDKRYKFNNGKWVVAGKAEPHMPSRVYVHPDSPATGAHWMKQPVSFDKVKLTNNQ-------SDKNGHLQIILNSMHK 127 (190)
T ss_pred cCcEEEecCCcEEEcCCCCCCCCCceEECCCCccCHHHHhhCcccccccceeccc-------cccCCcEeeeeccCce
Confidence 3578999999999999999998999999999999999999999999999999997 7778887 9999995
No 9
>KOG3585|consensus
Probab=99.72 E-value=2.7e-18 Score=165.95 Aligned_cols=69 Identities=41% Similarity=0.828 Sum_probs=65.4
Q ss_pred cccceeeeCCceEeCCCCCCCCCCceecCCCCCccccccccccceeeeEEeccCCCCCCCCCCCCCCC-eEeeecCC
Q psy14943 253 TTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGMGTQGP-VTLEVRHT 328 (328)
Q Consensus 253 ~~~rykf~ng~W~~aGkae~~~~~r~~~Hpdsp~~G~~Wm~~~vsF~klKLTNn~~~~~~~~~~~~~~-i~l~s~h~ 328 (328)
|.+||+|.+|+|.++|++|+..+.++|+|||||+||++||+++|+|+|||||||. .|.+|+ |+|+|||+
T Consensus 81 D~~rykf~ng~W~p~gk~e~~~~~~~~~Hpd~p~TG~~WM~~~V~F~kvKITN~~-------~~~~~~~i~l~SmHK 150 (328)
T KOG3585|consen 81 DDKRYKFNNGKWVPSGKAEPHVPSKVYVHPDGPATGAHWMSEPVSFDKVKITNNK-------SDKKGKVIILNSMHK 150 (328)
T ss_pred cCceeeecCCeeccCCCCCCCCCceEEEecCCccchHHHhcCCcccceeEeeccc-------cccCCceEeeecccc
Confidence 4689999999999999999999999999999999999999999999999999997 777888 99999996
No 10
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=99.45 E-value=1.5e-14 Score=129.13 Aligned_cols=69 Identities=41% Similarity=0.812 Sum_probs=48.7
Q ss_pred cccceeeeCCceEeCCCCCCCCCCceecCCCCCccccccccccceeeeEEeccCCCCCCCCCCCCCCCeEeeecCC
Q psy14943 253 TTNEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGMGTQGPVTLEVRHT 328 (328)
Q Consensus 253 ~~~rykf~ng~W~~aGkae~~~~~r~~~Hpdsp~~G~~Wm~~~vsF~klKLTNn~~~~~~~~~~~~~~i~l~s~h~ 328 (328)
+.++|+|.+|+|.++|++++..+.+.++||++|.+|++||+++|+|+++||||+. .++.|.|+|+|||+
T Consensus 56 d~~~~k~~~~~W~~~~~~~~~~~~~~~~h~~~~~~G~~WM~~~v~F~~vkitn~~-------~~~~~~I~L~s~hk 124 (184)
T PF00907_consen 56 DNKRYKFSNGKWVPSGKAEPPMPPRVVIHPDGPQTGSEWMKNGVSFDKVKITNNK-------EDKKGNIFLNSMHK 124 (184)
T ss_dssp CSEEEEEETTEEEEEEE---B-----EE-TT-SEEHHHHHHS-EEETT-EEESST-------T-TST-EE--TTEE
T ss_pred cCceeecccccccccccccccccceEEEEecCcCCHHHhCcccEEeehhhhhCCC-------CCcccceEEccccE
Confidence 4678999999999999999888889999999999999999999999999999997 46667799999995
No 11
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=57.40 E-value=17 Score=26.44 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEeeCCCCCCceeEEEEEEEc
Q psy14943 86 KVSIKGLEPDAMYTVLLEFLQI 107 (328)
Q Consensus 86 ~~~vsGLdP~~~Y~v~l~~~~~ 107 (328)
.+.|.||+|...|.+.|.....
T Consensus 57 ~~~i~~L~p~t~Y~~~v~a~~~ 78 (85)
T PF00041_consen 57 SYTITGLQPGTTYEFRVRAVNS 78 (85)
T ss_dssp EEEEESCCTTSEEEEEEEEEET
T ss_pred eeeeccCCCCCEEEEEEEEEeC
Confidence 8999999999999999986643
No 12
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=53.33 E-value=70 Score=27.43 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=44.0
Q ss_pred CCceEEcCCCcchhhhhhc----CeeeeeeEEeeeCCCCCCceEeccccccccEEEEEEeCCc--cceEEEeecCcc--e
Q psy14943 130 MNAMYLHPESPNFGEHWMK----DCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATE--QQIIKTFPFPET--Q 201 (328)
Q Consensus 130 ~~~~~~Hp~~~~~G~~WM~----~~vsF~klkiTN~~~~~~~I~L~s~hKY~PvL~I~~~~~~--~~~~~~f~fpeT--q 201 (328)
....||.-||+ .|.||.. ..+.-..|.|+....++ -|.|....++.|+. .+.+.+..++++ .
T Consensus 28 ~~~tyWQSdG~-qgpH~I~l~f~~~v~i~~l~i~v~~~De---------SYtP~~I~V~~G~~~dL~ei~~V~i~~~~~g 97 (134)
T cd08666 28 DPDTYWESDGS-QGQHWIRLHMKKGTIIKKLLLTVDATDD---------NYMPKRVAVYGGEGDNLKKLNDVSIDETLIG 97 (134)
T ss_pred CCCccEecCCC-CCCeEEEEEECCCcEeeEEEEEecCCCC---------CcCCcEEEEEecCccChhheEEEEeCCCCCC
Confidence 34568887776 5677865 44556667777665444 49999999988874 234566777664 4
Q ss_pred EEEec
Q psy14943 202 FIAVT 206 (328)
Q Consensus 202 FIaVT 206 (328)
-+.+.
T Consensus 98 ~V~il 102 (134)
T cd08666 98 DVCIL 102 (134)
T ss_pred eEEEe
Confidence 55553
No 13
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=47.69 E-value=26 Score=29.37 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=18.5
Q ss_pred eEEEeeCCCCCCceeEEEEEEEccCcceE
Q psy14943 85 VKVSIKGLEPDAMYTVLLEFLQIEQKRWK 113 (328)
Q Consensus 85 l~~~vsGLdP~~~Y~v~l~~~~~D~~ryk 113 (328)
+.++|+||.|...|++.+.+.--....|+
T Consensus 5 ~~I~v~GL~p~~~vtl~a~~~~~~g~~w~ 33 (126)
T PF04775_consen 5 VDIRVSGLPPGQEVTLRARLTDDNGVQWQ 33 (126)
T ss_dssp -EEEEES--TT-EEEEEEEEE-TTS-EEE
T ss_pred eEEEEeCCCCCCEEEEEEEEEeCCCCEEE
Confidence 67899999999999999998853344443
No 14
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=32.11 E-value=1.4e+02 Score=26.18 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=38.5
Q ss_pred CceEEcCCCcchhhhhhc----CeeeeeeEEeeeCCCCCCceEeccccccccEEEEEEeCCc---cceEEEeecCcc
Q psy14943 131 NAMYLHPESPNFGEHWMK----DCVSFAKVKLTNHSNGSGQIMLNSLHKYEPRIHLVKVATE---QQIIKTFPFPET 200 (328)
Q Consensus 131 ~~~~~Hp~~~~~G~~WM~----~~vsF~klkiTN~~~~~~~I~L~s~hKY~PvL~I~~~~~~---~~~~~~f~fpeT 200 (328)
...||.-||+ .|.||.. .++.-..|.|+-...++ -|.|....++.|+. .+.+.+..++.+
T Consensus 47 ~~TYWQSdG~-q~~HwI~l~~~~~v~I~~L~i~vd~~De---------SY~Ps~I~V~~G~~~~~L~el~~V~i~~~ 113 (152)
T cd08664 47 SGSYWQSSGS-QGKHWIRLELHPDVLIHSLKIIVDPADS---------SYMPSLVVVSGGDSLNSLKELKTINVNAT 113 (152)
T ss_pred CCCeeccCCC-CCceEEEEEECCCcEEEEEEEEecCCCC---------CcCCceEEEEecCChhhhheeEEEEcCCC
Confidence 3467766654 5667754 45556667777665454 59999999999875 233455555554
No 15
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=31.90 E-value=62 Score=21.88 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=19.9
Q ss_pred eeEEEeeCCCCCCceeEEEEEEE
Q psy14943 84 VVKVSIKGLEPDAMYTVLLEFLQ 106 (328)
Q Consensus 84 ~l~~~vsGLdP~~~Y~v~l~~~~ 106 (328)
...|.+.||.|...|.+.|....
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEEc
Confidence 56899999999999999987654
No 16
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=30.00 E-value=53 Score=23.08 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=19.9
Q ss_pred CeeEEEeeCCCCCCceeEEEEEEE
Q psy14943 83 PVVKVSIKGLEPDAMYTVLLEFLQ 106 (328)
Q Consensus 83 P~l~~~vsGLdP~~~Y~v~l~~~~ 106 (328)
....+.|.||.|...|.+.|....
T Consensus 55 ~~~~~~i~~l~p~~~Y~~~v~a~~ 78 (93)
T cd00063 55 SETSYTLTGLKPGTEYEFRVRAVN 78 (93)
T ss_pred cccEEEEccccCCCEEEEEEEEEC
Confidence 556899999999999999876543
No 17
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=29.18 E-value=73 Score=24.80 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=16.5
Q ss_pred EEEeeCCCCCCceeEEEEEEE
Q psy14943 86 KVSIKGLEPDAMYTVLLEFLQ 106 (328)
Q Consensus 86 ~~~vsGLdP~~~Y~v~l~~~~ 106 (328)
.+.|.+|+|...|++.+....
T Consensus 68 ~~~l~~L~p~t~YCv~V~~~~ 88 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQAFS 88 (106)
T ss_dssp EEEEES--TTSEEEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEEEe
Confidence 568999999999999999844
No 18
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=25.49 E-value=92 Score=23.60 Aligned_cols=25 Identities=24% Similarity=0.643 Sum_probs=18.0
Q ss_pred eeEEEEEEEccCcceEE-eCCeEEECC
Q psy14943 98 YTVLLEFLQIEQKRWKY-VNGEWVPAG 123 (328)
Q Consensus 98 Y~v~l~~~~~D~~ryk~-~~~~W~~~~ 123 (328)
|.+.+.+.+ ..+.||| .+|.|+...
T Consensus 37 ~~~~~~L~~-g~y~YkF~Vdg~w~~d~ 62 (79)
T cd02859 37 FSATLRLPP-GKYQYKFIVDGEWRHSP 62 (79)
T ss_pred cEEEEEcCC-CCEEEEEEECCEEEeCC
Confidence 666666544 5778888 899998753
No 19
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=21.41 E-value=3.6e+02 Score=21.01 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=37.4
Q ss_pred CeEEECCCCCCCCCCceEEcCCCcchhhhhhcCeeeeee--EEeeeCCC---------CCCceEeccccccccEEE
Q psy14943 117 GEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAK--VKLTNHSN---------GSGQIMLNSLHKYEPRIH 181 (328)
Q Consensus 117 ~~W~~~~~~~~~~~~~~~~Hp~~~~~G~~WM~~~vsF~k--lkiTN~~~---------~~~~I~L~s~hKY~PvL~ 181 (328)
|.|++.+-+.- ...++..-++|.-.-........+||- |.++.... ...++.+.+---|+|+..
T Consensus 4 G~WvE~~va~Y-a~e~~~l~~~GV~~ngrlV~T~F~fDG~~l~~~~G~~~~~y~~~~~~~s~mkr~~p~hy~~~F~ 78 (79)
T PF11012_consen 4 GTWVEQGVAPY-AAEEFTLNESGVFRNGRLVATSFEFDGKTLEYRTGSGTYRYQISGENNSEMKRISPAHYQPVFI 78 (79)
T ss_pred eEEEECCCCCc-cccEEEECCCcEEECCCEEeeEEEECCCEEEEEECCeEEEEEEcCCCchheEEcCCCCCCceee
Confidence 78999886632 234566666666655556666677774 33333321 112566666666777753
Done!