RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14943
(328 letters)
>1xbr_A Protein (T protein); complex (transcription factor/DNA),
transcription factor, DNA-binding protein,
transcription/DNA complex; HET: DNA; 2.50A {Xenopus
laevis} SCOP: b.2.5.4
Length = 184
Score = 209 bits (532), Expect = 9e-68
Identities = 129/192 (67%), Positives = 153/192 (79%), Gaps = 11/192 (5%)
Query: 53 QVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRW 112
+V LE+ DLW +F+ TNEMIVTKNGRRMFPV+KVS+ GL+P+AMYTVLL+F+ + RW
Sbjct: 3 KVSLEERDLWTRFKELTNEMIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRW 62
Query: 113 KYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNS 172
KYVNGEWVP GKPE + +Y+HP+SPNFG HWMKD VSF+KVKLTN NG GQIMLNS
Sbjct: 63 KYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNS 122
Query: 173 LHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFN 232
LHKYEPRIH+V+V Q++I + FPETQ FIAVTAYQNEE+T+LKIK N
Sbjct: 123 LHKYEPRIHIVRVGGTQRMITSHSFPETQ-----------FIAVTAYQNEEITALKIKHN 171
Query: 233 PFAKAFLDAKEK 244
PFAKAFLDAKE+
Sbjct: 172 PFAKAFLDAKER 183
Score = 64.0 bits (155), Expect = 2e-12
Identities = 40/64 (62%), Positives = 48/64 (75%)
Query: 255 NEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSG 314
+ WKYVNGEWVP GKPE + +Y+HP+SPNFG HWMKD VSF+KVKLTN NG GQ
Sbjct: 60 HRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIM 119
Query: 315 MGTQ 318
+ +
Sbjct: 120 LNSL 123
Score = 36.2 bits (83), Expect = 0.006
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 1 MFPVVKVSIKGLEPDAMYTVLLEFLQIEQK 30
MFPV+KVS+ GL+P+AMYTVLL+F+ +
Sbjct: 31 MFPVLKVSMSGLDPNAMYTVLLDFVAADNH 60
>2x6u_A T-box transcription factor TBX5; developmental protein,
DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear
protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB:
2x6v_A*
Length = 203
Score = 199 bits (508), Expect = 9e-64
Identities = 84/201 (41%), Positives = 118/201 (58%), Gaps = 18/201 (8%)
Query: 51 NPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQK 110
+V L + +LWLKF EMI+TK GRRMFP KV + GL P Y +L++ + +
Sbjct: 5 GIKVFLHERELWLKFHEVGTEMIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDH 64
Query: 111 RWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNH-SNGSGQIM 169
R+K+ + +W GK E +Y+HP+SP G HWM+ VSF K+KLTN+ + G I+
Sbjct: 65 RYKFADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHII 124
Query: 170 LNSLHKYEPRIHLVKV------ATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEE 223
LNS+HKY+PR+H+VK ++ T FPET FIAVT+YQN +
Sbjct: 125 LNSMHKYQPRLHIVKADENNGFGSKNTAFCTHVFPETA-----------FIAVTSYQNHK 173
Query: 224 VTSLKIKFNPFAKAFLDAKEK 244
+T LKI+ NPFAK F + +
Sbjct: 174 ITQLKIENNPFAKGFRGSDDM 194
Score = 63.6 bits (154), Expect = 3e-12
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 255 NEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSN 308
+ +K+ + +W GK E +Y+HP+SP G HWM+ VSF K+KLTN+
Sbjct: 64 HRYKFADNKWSVTGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHL 117
Score = 38.2 bits (88), Expect = 0.002
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 1 MFPVVKVSIKGLEPDAMYTVLLEFLQI 27
MFP KV + GL P Y +L++ +
Sbjct: 35 MFPSYKVKVTGLNPKTKYILLMDIVPA 61
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box
transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Length = 193
Score = 195 bits (495), Expect = 5e-62
Identities = 85/200 (42%), Positives = 121/200 (60%), Gaps = 16/200 (8%)
Query: 50 GNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQ 109
+P+V LE +LW +F EM++TK+GRRMFP KV GL+ A Y +L++ + +
Sbjct: 3 DDPKVHLEAKELWDQFHKRGTEMVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADD 62
Query: 110 KRWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNH-SNGSGQI 168
R+K+ N W+ AGK + MY+HP+SP GE WM V+F K+KLTN+ S+ G
Sbjct: 63 CRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFT 122
Query: 169 MLNSLHKYEPRIHLVKVATEQQI----IKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEV 224
+LNS+HKY+PR H+V+ ++ +T+ FPET+ FIAVTAYQN+++
Sbjct: 123 ILNSMHKYQPRFHIVRANDILKLPYSTFRTYLFPETE-----------FIAVTAYQNDKI 171
Query: 225 TSLKIKFNPFAKAFLDAKEK 244
T LKI NPFAK F D
Sbjct: 172 TQLKIDNNPFAKGFRDTGNG 191
Score = 59.8 bits (144), Expect = 6e-11
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 224 VTSLKIKFNPFAKAFLDAKEKTDNYY-----NQQTTNEWKYVNGEWVPAGKPEQPPMNAM 278
+T + P K +K Y +K+ N W+ AGK + M
Sbjct: 27 ITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRM 86
Query: 279 YLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQSGM 315
Y+HP+SP GE WM V+F K+KLTN+ + +
Sbjct: 87 YIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTI 123
Score = 32.1 bits (72), Expect = 0.14
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 1 MFPVVKVSIKGLEPDAMYTVLLEFLQI 27
MFP KV GL+ A Y +L++ +
Sbjct: 34 MFPPFKVRCSGLDKKAKYILLMDIIAA 60
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins;
HET: DNA; 2.58A {Homo sapiens}
Length = 203
Score = 178 bits (453), Expect = 1e-55
Identities = 86/201 (42%), Positives = 117/201 (58%), Gaps = 21/201 (10%)
Query: 50 GNPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQ 109
G V LE LW +F EMIVTK GRRMFP +V + G++P A Y +L++F+ ++
Sbjct: 14 GGVSVQLEMKALWDEFNQLGTEMIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDD 73
Query: 110 KRWKYV--NGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNH-SNGSG 166
KR++Y + W+ AGK + ++ HP+SP G WMK VSF K+KLTN+ + +G
Sbjct: 74 KRYRYAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNG 133
Query: 167 QIMLNSLHKYEPRIHLVKVATEQQI-------IKTFPFPETQFIAVTAYQNEEFIAVTAY 219
I+LNS+H+Y+PR H+V V + KTF F ET+ F AVTAY
Sbjct: 134 HIILNSMHRYQPRFHVVYVDPRKDSEKYAEENFKTFVFEETR-----------FTAVTAY 182
Query: 220 QNEEVTSLKIKFNPFAKAFLD 240
QN +T LKI NPFAK F D
Sbjct: 183 QNHRITQLKIASNPFAKGFRD 203
Score = 59.1 bits (142), Expect = 1e-10
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 257 WKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQ 312
+ + + W+ AGK + ++ HP+SP G WMK VSF K+KLTN+
Sbjct: 78 YAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNG 133
Score = 32.5 bits (73), Expect = 0.14
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 1 MFPVVKVSIKGLEPDAMYTVLLEF 24
MFP +V + G++P A Y +L++F
Sbjct: 45 MFPTFQVKLFGMDPMADYMLLMDF 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 8e-07
Identities = 46/269 (17%), Positives = 83/269 (30%), Gaps = 82/269 (30%)
Query: 10 KGLEPDAMYTVLLEFLQIEQKSVAMSIEMIKSDSQQYEAYGNPQVI-------LEDLDLW 62
L PD + ++LL++L + + E++ NP+ + + L W
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQD--LPREVLT---------TNPRRLSIIAESIRDGLATW 344
Query: 63 LKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPD---AMYTVLLEF---LQIEQKRWKYVN 116
++ H N +T +++ S+ LEP M+ L F I +
Sbjct: 345 DNWK-HVNCDKLTT-------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI- 395
Query: 117 GEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNSLH-- 174
W + M + K L I + S++
Sbjct: 396 --W--FDVIKSDVMVVV-----------------NKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 175 -----KYEPRIHLVKVATEQ-QIIKTF------PFPETQFIAVTAYQNEEFIA---VTAY 219
+ E +H + + I KTF P Q+ Y I
Sbjct: 435 LKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYF----YS---HIGHHLKNIE 485
Query: 220 QNEEVTSLKIKFNPFAKAFLDAKEKTDNY 248
E +T ++ F F FL+ K + D+
Sbjct: 486 HPERMTLFRMVFLDF--RFLEQKIRHDST 512
Score = 48.3 bits (114), Expect = 2e-06
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 83/264 (31%)
Query: 4 VVKVSIKGLEPDAMYTVLLEFLQIEQKSV---AMSIEMIKSDSQQYEAYGNPQVILEDL- 59
+++ S+ LEP + + L + S + + +I D + + V++ L
Sbjct: 358 IIESSLNVLEPAEYRK-MFDRLSVFPPSAHIPTILLSLIWFDVIKSD----VMVVVNKLH 412
Query: 60 -----------------DLWLKFQSHTNEM------IVTK-NGRRMFPVVKVSIKGLEPD 95
++L+ + IV N + F +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI---PPYL 469
Query: 96 AMYTVLLEFL-----QIEQKRWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDC 150
Y + IE + M ++L +F +++
Sbjct: 470 DQY--FYSHIGHHLKNIEH------------PERMTLFRM--VFL-----DF--RFLE-- 504
Query: 151 VSFAKVKLTNHS-NGSGQIM--LNSLHKYEPRIHLVKVATEQQI--IKTF-PFPETQFIA 204
K++ + + N SG I+ L L Y+P I E+ + I F P E I
Sbjct: 505 ---QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 205 V-------TAYQNE-EFIAVTAYQ 220
A E E I A++
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHK 585
Score = 36.0 bits (82), Expect = 0.020
Identities = 48/327 (14%), Positives = 99/327 (30%), Gaps = 118/327 (36%)
Query: 4 VVKVSIKG-LEPDAMYTVLLEFLQIEQKSVAMSIEMIKSDSQQYEAYGNPQVILEDLDLW 62
+V+ ++ L + Y L+ ++ EQ+ +M ++ Y + L+
Sbjct: 78 MVQKFVEEVLRIN--YKFLMSPIKTEQRQPSM-------MTRMYIEQRDR--------LY 120
Query: 63 LKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRWKYV------- 115
N ++F K ++ L+P Y L + L E + K V
Sbjct: 121 --------------NDNQVFA--KYNVSRLQP---YLKLRQALL-ELRPAKNVLIDGVLG 160
Query: 116 NGEWVPAG-----KPEQPPMNAMYLHPESPNFGEHWMK--DCVSFAKV-----KLTNHSN 163
+G+ A Q M+ F W+ +C S V KL +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMD----------FKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 164 GSGQIMLNSLHKYEPRIHLVK------VATEQ--------------QIIKTFPFP----- 198
+ + + RIH ++ + ++ + F
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 199 ETQFIAVTAY----------QNEEFIAVTAYQNEEVTS--LKIKF----------NPFAK 236
T+F VT + + + +T + + + L + NP
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 237 AFLDAKEKTDNYYNQQTTNEWKYVNGE 263
+ + + T + WK+VN +
Sbjct: 331 SIIAESIRDGL----ATWDNWKHVNCD 353
Score = 31.0 bits (69), Expect = 0.61
Identities = 21/167 (12%), Positives = 49/167 (29%), Gaps = 33/167 (19%)
Query: 174 HKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEE------VTSL 227
++Y+ + + E + F + Q + + EE + ++ +L
Sbjct: 16 YQYKDILSVF----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 228 KIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGKPEQPPMNA-MY------L 280
K + F++ + NY ++ + QP M MY L
Sbjct: 72 LSKQEEMVQKFVEEVLR-INY-------KFLM--SPI--KTEQRQPSMMTRMYIEQRDRL 119
Query: 281 HPESPNFGEH--WMKDCVSFAKVKLTNHSNGSGQS--GMGTQGPVTL 323
+ ++ F ++ + L G+ G +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.023
Identities = 35/231 (15%), Positives = 75/231 (32%), Gaps = 70/231 (30%)
Query: 5 VKVSIKGLEPDAMY---TVLLE-FLQIEQKSVAMSIEMIKSDSQQYEAYGNPQVILEDLD 60
++ + L P A + + L E F K + E +D + P E
Sbjct: 16 LEHVL--LVPTASFFIASQLQEQF----NKILPEPTEGFAADDE-------PTTPAE--- 59
Query: 61 LWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAM-----YTVLLEFLQIEQKRWK-- 113
L KF + + ++ + V+ + + E + + + + LQ
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 114 ------YVNGEWVPAGKP-EQPPMNAMYLHPESPN------FG-----EHWMKDCVSFAK 155
Y+ + A +P ++ +A++ N FG + + ++
Sbjct: 120 KELIKNYITARIM-AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE------ 172
Query: 156 VKLTNHSNGSGQIMLNSLHK-YEPRIH-LVKVATE--QQIIKTFPFPETQF 202
L L++ Y + L+K + E ++I+T E F
Sbjct: 173 --------------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Score = 35.4 bits (81), Expect = 0.028
Identities = 26/182 (14%), Positives = 62/182 (34%), Gaps = 54/182 (29%)
Query: 15 DAMYTVLLEFLQI-------EQKS---VAMSIEMIKSDSQQYEAYGNPQVILEDLDLWLK 64
++ + + + + + ++ ++ +++ + E +P + + +L +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQ 348
Query: 65 FQSH---TNEM--------IVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQI------ 107
Q + TN I NG + VV G P ++Y + L +
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNL-VV----SGP-PQSLYGLNLTLRKAKAPSGL 402
Query: 108 EQKRWKYVNGEWVPAGKPEQP-------PMNA----MYLHPESPNFGEHWMKDCVSFAKV 156
+Q R +P + + P+ + L P S + +K+ VSF
Sbjct: 403 DQSR--------IPFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 157 KL 158
+
Sbjct: 454 DI 455
Score = 29.6 bits (66), Expect = 1.6
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 35/103 (33%)
Query: 162 SNGSGQIML---NSLHKYEPRIHLVKVATEQ---QIIKTFPFPETQFIAVTAYQNE---- 211
S+GS + +L + Q Q K P P F A +E
Sbjct: 12 SHGSLEHVLLVPTASF----------FIASQLQEQFNKILPEPTEGF----AADDEPTTP 57
Query: 212 -----EFIAVTAYQNEEVTS------LKIKFNPFAKAFLDAKE 243
+F+ + E L + F +L+ +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.0 bits (72), Expect = 0.18
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 178 PRIHLVKVATEQQIIKTFPFPETQFIAVTA--YQNEEFIAVTAYQNEEVTSLKIKFNPFA 235
P I +V E T +F+ + ++N IA+ E+ +
Sbjct: 143 PLIRIVS-GLELS--DTKQ-KGKKFLVIAYEPFEN---IAI-ELPPNEILFSENNDMDNN 194
Query: 236 KAFLDAKEKTDNYYNQQT 253
+D K +++ +
Sbjct: 195 NDGVDELNKKCTFWDAIS 212
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 31.0 bits (71), Expect = 0.55
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 214 IAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGK 269
+ + Y++E T ++ N KAF +A + ++ +NGE V
Sbjct: 1 VMLQPYKHEPFTDFTVEAN--RKAFEEALGLVEKELGKEYPL---IINGERVTTED 51
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 30.6 bits (70), Expect = 0.74
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 214 IAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGK 269
+ V ++NE + + + + +A +A + + + Y+ GEWV +
Sbjct: 1 MTVEPFRNEPIETFQTEEA--RRAMREALRRVREEFGRHYPL---YIGGEWVDTKE 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.399
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,020,046
Number of extensions: 290004
Number of successful extensions: 898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 879
Number of HSP's successfully gapped: 29
Length of query: 328
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 234
Effective length of database: 4,077,219
Effective search space: 954069246
Effective search space used: 954069246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)