RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14943
         (328 letters)



>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score =  259 bits (662), Expect = 9e-88
 Identities = 129/192 (67%), Positives = 153/192 (79%), Gaps = 11/192 (5%)

Query: 53  QVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQKRW 112
           +V LE+ DLW +F+  TNEMIVTKNGRRMFPV+KVS+ GL+P+AMYTVLL+F+  +  RW
Sbjct: 3   KVSLEERDLWTRFKELTNEMIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRW 62

Query: 113 KYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQIMLNS 172
           KYVNGEWVP GKPE    + +Y+HP+SPNFG HWMKD VSF+KVKLTN  NG GQIMLNS
Sbjct: 63  KYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNS 122

Query: 173 LHKYEPRIHLVKVATEQQIIKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFN 232
           LHKYEPRIH+V+V   Q++I +  FPETQ           FIAVTAYQNEE+T+LKIK N
Sbjct: 123 LHKYEPRIHIVRVGGTQRMITSHSFPETQ-----------FIAVTAYQNEEITALKIKHN 171

Query: 233 PFAKAFLDAKEK 244
           PFAKAFLDAKE+
Sbjct: 172 PFAKAFLDAKER 183



 Score = 76.8 bits (189), Expect = 2e-17
 Identities = 40/56 (71%), Positives = 45/56 (80%)

Query: 257 WKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQ 312
           WKYVNGEWVP GKPE    + +Y+HP+SPNFG HWMKD VSF+KVKLTN  NG GQ
Sbjct: 62  WKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQ 117



 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 18/30 (60%), Positives = 25/30 (83%)

Query: 1  MFPVVKVSIKGLEPDAMYTVLLEFLQIEQK 30
          MFPV+KVS+ GL+P+AMYTVLL+F+  +  
Sbjct: 31 MFPVLKVSMSGLDPNAMYTVLLDFVAADNH 60


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score =  239 bits (612), Expect = 5e-80
 Identities = 84/195 (43%), Positives = 120/195 (61%), Gaps = 16/195 (8%)

Query: 51  NPQVILEDLDLWLKFQSHTNEMIVTKNGRRMFPVVKVSIKGLEPDAMYTVLLEFLQIEQK 110
           +P+V LE  +LW +F     EM++TK+GRRMFP  KV   GL+  A Y +L++ +  +  
Sbjct: 1   DPKVHLEAKELWDQFHKRGTEMVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDC 60

Query: 111 RWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGS-GQIM 169
           R+K+ N  W+ AGK +      MY+HP+SP  GE WM   V+F K+KLTN+ +   G  +
Sbjct: 61  RYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTI 120

Query: 170 LNSLHKYEPRIHLVKVATEQQI----IKTFPFPETQFIAVTAYQNEEFIAVTAYQNEEVT 225
           LNS+HKY+PR H+V+     ++     +T+ FPET+           FIAVTAYQN+++T
Sbjct: 121 LNSMHKYQPRFHIVRANDILKLPYSTFRTYLFPETE-----------FIAVTAYQNDKIT 169

Query: 226 SLKIKFNPFAKAFLD 240
            LKI  NPFAK F D
Sbjct: 170 QLKIDNNPFAKGFRD 184



 Score = 72.2 bits (177), Expect = 8e-16
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 255 NEWKYVNGEWVPAGKPEQPPMNAMYLHPESPNFGEHWMKDCVSFAKVKLTNHSNGSGQ 312
             +K+ N  W+ AGK +      MY+HP+SP  GE WM   V+F K+KLTN+ +    
Sbjct: 60  CRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHG 117



 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 1  MFPVVKVSIKGLEPDAMYTVLLEFLQIEQK 30
          MFP  KV   GL+  A Y +L++ +  +  
Sbjct: 31 MFPPFKVRCSGLDKKAKYILLMDIIAADDC 60


>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
           {Thermus thermophilus [TaxId: 274]}
          Length = 516

 Score = 31.0 bits (69), Expect = 0.20
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 214 IAVTAYQNEEVTSLKIKFNPFAKAFLDAKEKTDNYYNQQTTNEWKYVNGEWVPAGK 269
           + V  ++NE + + +       +A  +A  +    + +       Y+ GEWV   +
Sbjct: 1   MTVEPFRNEPIETFQT--EEARRAMREALRRVREEFGRHYPL---YIGGEWVDTKE 51


>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Streptococcus mutans [TaxId: 1309]}
          Length = 474

 Score = 26.4 bits (57), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)

Query: 110 KRWK-YVNGEWVPAGK 124
           K++K YVNGEW  +  
Sbjct: 2   KQYKNYVNGEWKLSEN 17


>d1roca_ b.1.22.1 (A:) Anti-silencing protein 1, ASF1 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 155

 Score = 25.5 bits (56), Expect = 7.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 200 TQFIAVTAYQNEEFIAVTAYQNEEVTSLKIKFNPFAKAFLD 240
           T  +   +Y   EF+ V  Y N E    +++ NP AK  +D
Sbjct: 94  TVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKVQVD 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,248,405
Number of extensions: 58864
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 14
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)