BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14945
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 322 bits (825), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 178/358 (49%), Positives = 237/358 (66%), Gaps = 42/358 (11%)
Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
KS+ L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK+ + G
Sbjct: 191 KSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTE---------VNSGFF 241
Query: 220 NQIQHPTASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCST 279
+ L+ I + +K+ I E+ K+ C
Sbjct: 242 YKSAEEREKLVKAERK---------------FIEDRVKK----IIELKKKV------CGD 276
Query: 280 SDR-----YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP-AH 333
SD+ + GIDP SLD A+EGIIALRRAKRRNMERL+LACGG A+NS++ L P
Sbjct: 277 SDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCL 336
Query: 334 LGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTID 393
LG+AG V+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN ID
Sbjct: 337 LGHAG-VYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAID 395
Query: 394 DGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTL 453
DG VVPGAGA EVA AL YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+TL
Sbjct: 396 DGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETL 455
Query: 454 VKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISGLHPRVITE 511
VK+Q E+ G VGVD+N+GE + AGI+DN VK+Q+++S + + ++ E
Sbjct: 456 VKVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDE 512
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 48/53 (90%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
MVE+MEMKHK+ D+ L++G+VLDHGARHPDM K V++A+ILTCN+S+EYEK+
Sbjct: 182 MVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKT 234
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 47/62 (75%)
Query: 499 WIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLL 558
+I GLHPR+ITEGF A+ KAL+ LE +K++ RE L+DVARTSLRTKV ELAD+L
Sbjct: 101 YISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVL 160
Query: 559 AE 560
E
Sbjct: 161 TE 162
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 40/46 (86%)
Query: 118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
KS+ L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK++V
Sbjct: 191 KSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEV 236
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 34/36 (94%)
Query: 86 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
G+VL+HGARHPDM K V++A+ILTCN+S+EYEK++V
Sbjct: 201 GLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEV 236
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
NSGFD Q+TLVK+Q E+ G VGVD+N+GE + AGI+DN VK+Q+++S
Sbjct: 446 NSGFDLQETLVKVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHS 499
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%)
Query: 221 QIQHPTASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAE 265
QIQHPTASLIA+ VL+IGELLKQAD+YI+E
Sbjct: 60 QIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISE 104
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/337 (43%), Positives = 200/337 (59%), Gaps = 35/337 (10%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
+KG+VL+HG RHPDMP VKNA++L N+S+EYEK+ E++ ++ Q
Sbjct: 209 FIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKT-------EVNSGFFYSSADQRDK 261
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+ R V +L K I ++ ++ PD + G
Sbjct: 262 LAASERK----------------FVDAKLKK-----IIDLKNEVCGMDPDKGFVIINQKG 300
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
IDP SLD+FA+ I+ALRRAKRRNMERL L GG A NSVE L P LG++G V++ +G
Sbjct: 301 IDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIG 360
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
EEKFT+V E +P+S TIL+KG + LAQTKDAVRDGLRA+ N + D ++PGAGAF +
Sbjct: 361 EEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYI 420
Query: 407 AAWHALQNY---KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
A L++ K KGK++ GI+A+AEALL+IPKT+ NSGFD D L +++ +A
Sbjct: 421 ALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDA 480
Query: 464 PGV----AVGVDVNSGEVLNPTSAGIYDNLTVKRQII 496
VGVD+N G+ +PT GI+D+ V R I
Sbjct: 481 QDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAI 517
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 44/53 (83%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
MVE+M+M+H +P D+ +KG+VLDHG RHPDMP VKNA++L N+S+EYEK+
Sbjct: 193 MVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKT 245
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 33/39 (84%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+KG+VL+HG RHPDMP VKNA++L N+S+EYEK++V
Sbjct: 209 FIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEV 247
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 5/51 (9%)
Query: 76 MQHQHGIREE-----GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
MQ QH ++ G+VL+HG RHPDMP VKNA++L N+S+EYEK++V
Sbjct: 197 MQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEV 247
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 499 WIISGLHPRVITEGFTQARLKALEVLESLKITT---PPSREILLDVARTSLRTKVERELA 555
+I G+HPR+IT+GF AR ++++ L+ KI+ RE LL VAR+SL TKV+ +L
Sbjct: 108 FIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLT 167
Query: 556 DLL 558
++L
Sbjct: 168 EVL 170
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGV----AVGVDVNSGEVLNPTSAGIYDNLTVKRQII 626
NSGFD D L +++ +A VGVD+N G+ +PT GI+D+ V R I
Sbjct: 461 NSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAI 517
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 221 QIQHPTASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAE 265
QIQ PTA LIARA V ++GELL+QA +I E
Sbjct: 67 QIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQE 111
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 173/334 (51%), Gaps = 39/334 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
+ G+V++ H MP VKNA I + ++E +K+ + E + QI P+
Sbjct: 212 FISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT-----EIEAKV------QISDPS 260
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
I + L Q ++ K+ K + + G
Sbjct: 261 K------------------------IQDFLNQETNTFKQMVEKIKKSGANVVLCQK---G 293
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
ID + A+EGI A+RR K+ +ME+L+ A G + ++ L P+ LG A +V E +G
Sbjct: 294 IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIG 353
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
+++ TFV CKNP++V+IL++G H +++ + A+ D +R + T +DG + G GA E
Sbjct: 354 DDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEA 413
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
L Y N+V G+ +L I+A+A+AL IIP+T+A N+G D +TL+KL+ A E +
Sbjct: 414 ELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLK-ADDEKGRI 472
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWI 500
+VGVD+++ V + + G+ D L VK + S +
Sbjct: 473 SVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAV 506
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
D+ + G+V+D H MP VKNA I + ++E +K+
Sbjct: 209 DTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT 248
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D +TL+KL+ A E ++VGVD+++ V + + G+ D L VK + S
Sbjct: 451 NAGIDPINTLIKLK-ADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALES 504
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+ G+V++ H MP VKNA I + ++E +K+++
Sbjct: 212 FISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 250
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 130/215 (60%), Gaps = 1/215 (0%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+ GI+A+RR K+ +ME+L+ A G + +V+ L P LGYA V E
Sbjct: 294 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
L E FVE CKNP++VTIL++G +H + + + A+ D ++ +K+ ++DGAV+P GA
Sbjct: 354 KLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA 413
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E+ L Y V GK L I+ +A+AL IIPKT+A N+G D + LVK+ + +
Sbjct: 414 PEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVI-SEHKN 472
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+ +G+DV G+ + GI + L VK+Q I S
Sbjct: 473 RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
+S LV+GVV+D HP MPK V+NA I N ++E +K+
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKT 251
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 162
LV+GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE 252
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSS 204
LV+GVV++ HP MPK V+NA I N ++E +K+
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE 252
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 69 EERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 120
E++A ++ +R GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 203 EKKAGEGVEESELVR--GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE 252
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 504 LHPRVITEGFTQARLKALEVLESLKI-TTPPSREILLDVARTSLRTKVERELADLLAEPN 562
+HP +I +G+ A KA E+L+ + I P E LL +A TS+ K +LLA+
Sbjct: 119 IHPSIIIKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKL- 177
Query: 563 SVPSLRNSATVNSGFDAQDTL-VKLQEACGE 592
+V +++ A G D +K ++ GE
Sbjct: 178 AVEAVKQVAEKKDGKYVVDLDNIKFEKKAGE 208
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D + LVK+ + + G+ +G+DV G+ + GI + L VK+Q I S
Sbjct: 454 NAGLDTVEMLVKVI-SEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 130/215 (60%), Gaps = 1/215 (0%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+ GI+A+RR K+ +ME+L+ A G + +V+ L P LGYA V E
Sbjct: 294 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
L E FVE CKNP++VTIL++G +H + + + A+ D ++ +K+ ++DGAV+P GA
Sbjct: 354 KLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA 413
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E+ L Y V GK L I+ +A+AL IIPKT+A N+G D + LVK+ + +
Sbjct: 414 PEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVI-SEHKN 472
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+ +G+DV G+ + GI + L VK+Q I S
Sbjct: 473 RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
+S LV+GVV+D HP MPK V+NA I N ++E +K+
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKT 251
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 162
LV+GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE 252
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSS 204
LV+GVV++ HP MPK V+NA I N ++E +K+
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE 252
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 504 LHPRVITEGFTQARLKALEVLESLKI-TTPPSREILLDVARTSLRTKVERELADLLAEPN 562
+HP +IT+G+ A KA E+L+ + I P E LL +A TS+ K +LLA+
Sbjct: 119 IHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKL- 177
Query: 563 SVPSLRNSATVNSGFDAQDTL-VKLQEACGE 592
+V +++ A G D +K ++ GE
Sbjct: 178 AVEAVKQVAEKKDGKYVVDLDNIKFEKKAGE 208
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 69 EERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 120
E++A ++ +R GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 203 EKKAGEGVEESELVR--GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE 252
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D + LVK+ + + G+ +G+DV G+ + GI + L VK+Q I S
Sbjct: 454 NAGLDTVEMLVKVI-SEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 130/215 (60%), Gaps = 1/215 (0%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+ GI+A+RR K+ +ME+L+ A G + +V+ L P LGYA V E
Sbjct: 294 QKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEER 353
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
L E FVE CKNP++VTIL++G +H + + + A+ D ++ +K+ ++DGAV+P GA
Sbjct: 354 KLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGA 413
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E+ L Y V GK L I+ +A+AL IIPKT+A N+G D + LVK+ + +
Sbjct: 414 PEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVI-SEHKN 472
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+ +G+DV G+ + GI + L VK+Q I S
Sbjct: 473 RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
+S LV+GVV+D HP MPK V+NA I N ++E +K+
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKT 251
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 162
LV+GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE 252
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSS 204
LV+GVV++ HP MPK V+NA I N ++E +K+
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE 252
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 504 LHPRVITEGFTQARLKALEVLESLKI-TTPPSREILLDVARTSLRTKVERELADLLAEPN 562
+HP +IT+G+ A KA E+L+ + I P E LL +A TS+ K +LLA+
Sbjct: 119 IHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKL- 177
Query: 563 SVPSLRNSATVNSGFDAQDTL-VKLQEACGE 592
+V +++ A G D +K ++ GE
Sbjct: 178 AVEAVKQVAEKKDGKYVVDLDNIKFEKKAGE 208
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 69 EERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 120
E++A ++ +R GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 203 EKKAGEGVEESELVR--GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTE 252
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D + LVK+ + + G+ +G+DV G+ + GI + L VK+Q I S
Sbjct: 454 NAGLDTVEMLVKVI-SEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 127/215 (59%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+EGI+A RR K+ +ME+L+ A G + +++ L LG AG V E
Sbjct: 281 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 340
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+ + FVEECK+P++VT+L++G +H + + AV D + + TI+DG +V G G+
Sbjct: 341 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 400
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
EV L+ Y + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A
Sbjct: 401 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 460
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +G V + G+ + L VK Q I S
Sbjct: 461 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 495
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 27/123 (21%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQV-----R 68
D+ L+KGV++D MPK V +A I N ++E +++ + A++ +
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQ 258
Query: 69 EERAHPDM--------------------QHQHGIREEGVVLNHGARHPDMPKSVK--NAH 106
EE+ DM QH + +EG+V + DM K K A+
Sbjct: 259 EEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGAN 318
Query: 107 ILT 109
++T
Sbjct: 319 VIT 321
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G DA + LVK++ A G++V +G V + G+ + L VK Q I S
Sbjct: 441 NAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 495
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 127/215 (59%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+EGI+A RR K+ +ME+L+ A G + +++ L LG AG V E
Sbjct: 259 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 318
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+ + FVEECK+P++VT+L++G +H + + AV D + + TI+DG +V G G+
Sbjct: 319 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 378
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
EV L+ Y + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A
Sbjct: 379 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 438
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +G V + G+ + L VK Q I S
Sbjct: 439 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 473
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVREERAH 73
D+ L+KGV++D MPK V +A I N ++E + A+++ A+
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEE----TASEMLKDMVAEIKASGAN 254
Query: 74 P-------DMQHQHGIREEGVVLNHGARHPDMPKSVK--NAHILT 109
D QH + +EG+V + DM K K A+++T
Sbjct: 255 VLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIT 299
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G DA + LVK++ A G++V +G V + G+ + L VK Q I S
Sbjct: 419 NAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 473
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 127/215 (59%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+EGI+A RR K+ +ME+L+ A G + +++ L LG AG V E
Sbjct: 265 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 324
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+ + FVEECK+P++VT+L++G +H + + AV D + + TI+DG +V G G+
Sbjct: 325 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 384
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
EV L+ Y + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A
Sbjct: 385 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 444
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +G V + G+ + L VK Q I S
Sbjct: 445 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 479
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVREERAH 73
D+ L+KGV++D MPK V +A I N ++E + A+++ A+
Sbjct: 205 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEE----TASEMLKDMVAEIKASGAN 260
Query: 74 P-------DMQHQHGIREEGVVLNHGARHPDMPKSVK--NAHILT 109
D QH + +EG+V + DM K K A+++T
Sbjct: 261 VLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIT 305
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G DA + LVK++ A G++V +G V + G+ + L VK Q I S
Sbjct: 425 NAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 479
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 127/215 (59%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+EGI+A RR K+ +ME+L+ A G + +++ L LG AG V E
Sbjct: 287 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 346
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+ + FVEECK+P++VT+L++G +H + + AV D + + TI+DG +V G G+
Sbjct: 347 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 406
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
EV L+ Y + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A
Sbjct: 407 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 466
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +G V + G+ + L VK Q I S
Sbjct: 467 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 27/123 (21%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQV-----R 68
D+ L+KGV++D MPK V +A I N ++E +++ + A++ +
Sbjct: 205 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQ 264
Query: 69 EERAHPDM--------------------QHQHGIREEGVVLNHGARHPDMPKSVK--NAH 106
EE+ DM QH + +EG+V + DM K K A+
Sbjct: 265 EEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGAN 324
Query: 107 ILT 109
++T
Sbjct: 325 VIT 327
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G DA + LVK++ A G++V +G V + G+ + L VK Q I S
Sbjct: 447 NAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 126/215 (58%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+EGI+A RR K+ +ME+L+ A G + ++ L LG AG V E
Sbjct: 287 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEER 346
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+ + FVEECK+P++VT+L++G +H + + AV D + + TI+DG +V G G+
Sbjct: 347 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 406
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
EV L+ Y + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A
Sbjct: 407 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 466
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +G V + G+ + L VK Q I S
Sbjct: 467 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 25/115 (21%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQV-----R 68
D+ L+KGV++D MPK V +A I N ++E +++ + A++ +
Sbjct: 205 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQ 264
Query: 69 EERAHPDM--------------------QHQHGIREEGVVLNHGARHPDMPKSVK 103
EE+ DM QH + +EG+V + DM K K
Sbjct: 265 EEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAK 319
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G DA + LVK++ A G++V +G V + G+ + L VK Q I S
Sbjct: 447 NAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 126/215 (58%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+EGI+A RR K+ +ME+L+ A G + ++ L LG AG V E
Sbjct: 259 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEER 318
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+ + FVEECK+P++VT+L++G +H + + AV D + + TI+DG +V G G+
Sbjct: 319 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 378
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
EV L+ Y + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A
Sbjct: 379 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 438
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +G V + G+ + L VK Q I S
Sbjct: 439 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 473
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHI--LTCNIS-----------MEYEKSGSGPWCA 60
D+ L+KGV++D MPK V +A I L C I E + SG+
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFC 258
Query: 61 TPGHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVK 103
G D QH + +EG+V + DM K K
Sbjct: 259 QKG----------IDDLAQHYLAKEGIVAARRVKKSDMEKLAK 291
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G DA + LVK++ A G++V +G V + G+ + L VK Q I S
Sbjct: 419 NAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 473
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 126/215 (58%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+EGI+A RR K+ +ME+L+ A G + ++ L LG AG V E
Sbjct: 281 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEER 340
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+ + FVEECK+P++VT+L++G +H + + AV D + + TI+DG +V G G+
Sbjct: 341 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGS 400
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
EV L+ Y + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A
Sbjct: 401 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 460
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +G V + G+ + L VK Q I S
Sbjct: 461 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 495
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 25/115 (21%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQV-----R 68
D+ L+KGV++D MPK V +A I N ++E +++ + A++ +
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQ 258
Query: 69 EERAHPDM--------------------QHQHGIREEGVVLNHGARHPDMPKSVK 103
EE+ DM QH + +EG+V + DM K K
Sbjct: 259 EEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAK 313
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G DA + LVK++ A G++V +G V + G+ + L VK Q I S
Sbjct: 441 NAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 495
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 165/332 (49%), Gaps = 38/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
LV G+V++ HP MPK ++NA I + S+E EK PE+ +I PT
Sbjct: 222 LVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEK-------PELDAE----IRINDPT 270
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+ + L + + I E K+ K + + G
Sbjct: 271 Q------------------------MQKFLDEEENLIKE---KVDKILATGANVIICQKG 303
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
ID + A++G++A+RRAK+ ++E+L+ A GG +++++ + LGYA + E +G
Sbjct: 304 IDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVG 363
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
E+K FVE KNP+S++IL++G + + +T+ A+RD L + + I DG + G GA E+
Sbjct: 364 EDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEI 423
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
L+ Y V GK +L ++AYA AL + + N+GFD D L+KL+
Sbjct: 424 EIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNK 483
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+D+ +G+ ++ G+ + VK I +
Sbjct: 484 WYGIDLYAGQPVDMWQKGVIEPALVKMNAIKA 515
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
D+ LV G+V+D HP MPK ++NA I + S+E EK
Sbjct: 219 DTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEK 257
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
LV G+V++ HP MPK ++NA I + S+E EK ++
Sbjct: 222 LVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPEL 260
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 86 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
G+V++ HP MPK ++NA I + S+E EK ++
Sbjct: 225 GIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPEL 260
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 126/215 (58%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ GID + A+EGI+A RR K+ +ME+L+ A G + +++ L LG AG V E
Sbjct: 259 QKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEER 318
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+ + FVEECK+P++VT+L++G +H + + AV + + TI+DG +V G G+
Sbjct: 319 KISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGS 378
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
EV L+ Y + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A
Sbjct: 379 TEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASN 438
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +G V + G+ + L VK Q I S
Sbjct: 439 GNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 473
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 25/111 (22%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHI--LTCNIS-----------MEYEKSGSGPWCA 60
D+ L+KGV++D MPK V +A I L C I E + SG+
Sbjct: 199 DTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFC 258
Query: 61 TPGHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVK--NAHILT 109
G D QH + +EG+V + DM K K A+++T
Sbjct: 259 QKG----------IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIT 299
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G DA + LVK++ A G++V +G V + G+ + L VK Q I S
Sbjct: 419 NAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 473
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 158/334 (47%), Gaps = 41/334 (12%)
Query: 162 DVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQ 221
D C++ +GV++N HP M + +KN I+ + S+EY+K G Q +I + +
Sbjct: 199 DSCVL--RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK---GESQTDIEITREED-- 251
Query: 222 IQHPTASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSD 281
+L+ + YI ++ + + PD ++
Sbjct: 252 ------------------------------FTRILQMEEEYIQQLCEDIIQLKPDVVITE 281
Query: 282 RYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVF 341
+ GI + R I A+RR ++ + R++ ACG ++ E L +G +
Sbjct: 282 K---GISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLL 338
Query: 342 E-HVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
E +G+E FTF+ ECK+P++ TILL+G +K L++ + ++D ++ +N + D +VPG
Sbjct: 339 EIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPG 398
Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEAC 460
GA E+A HAL + G + +A A+AL +IP+T+ N G L L+
Sbjct: 399 GGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKH 458
Query: 461 GEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQ 494
+ GV+ +G +++ GI++ L VK Q
Sbjct: 459 TQENCETWGVNGETGTLVDMKELGIWEPLAVKLQ 492
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 9 HKTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGS 55
K PG DSC+++GV+++ HP M + +KN I+ + S+EY+K S
Sbjct: 190 EKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 240
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 DVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 162
D C++ +GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 199 DSCVL--RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE 239
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 86 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 120
GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 205 GVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE 239
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 47/336 (13%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L+ G+V++ HP+MP+ V+NA IL + +E+ K+ EI +I P
Sbjct: 166 LIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV---DSEI--------KITSPG 214
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY--- 283
Q +++ + M + A S
Sbjct: 215 -------------------------------QMQLFLDQEEKMMREMAEKVIASGANVVF 243
Query: 284 -RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE 342
+ GID + + GI A+RR K+ +++RLS G T + ++ + +G AG V E
Sbjct: 244 CQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEE 303
Query: 343 HVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
+ K T+V C+N ++VT+LL G +H + A+ D L + I+DG VV G G
Sbjct: 304 KEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGG 363
Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE 462
+ EV L Y +T+KG+ +L + +AEAL +IP +A N+G D D +V+L+ + E
Sbjct: 364 SSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELR-SQHE 422
Query: 463 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +GEV++ + + L +K Q IN+
Sbjct: 423 KGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINA 458
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS--GSGPWCATPGHAQV---R 68
DS L+ G+V+D HP+MP+ V+NA IL + +E+ K+ S +PG Q+ +
Sbjct: 163 DSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQ 222
Query: 69 EERAHPDMQHQ 79
EE+ +M +
Sbjct: 223 EEKMMREMAEK 233
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L+ G+V++ HP+MP+ V+NA IL + +E+ K++V
Sbjct: 166 LIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV 204
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
+G+V++ HP+MP+ V+NA IL + +E+ K++V
Sbjct: 168 DGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV 204
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 499 WIISGLHPRVITEGFTQARLKALEVLESLKITTPPSRE-ILLDVARTSLRTK 549
I+ G+H +I+EG+ A K E+LE++ I P E L+ +A T++ K
Sbjct: 64 LIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGK 115
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 166/332 (50%), Gaps = 39/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L+ G++++ HP MP VK+A I + +E +K PE +I+ P+
Sbjct: 213 LINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKK-------PEFDTNL----RIEDPS 261
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+I + L Q + + E+ K+ + + + G
Sbjct: 262 ------------------------MIQKFLAQEENMLREMVDKIKSVGANVVITQK---G 294
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
ID + +R GI A+RR K+ +M++L+ A G + +++++ + + LG A V + +G
Sbjct: 295 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVG 354
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
E+ TFV CKNP++V+IL++G +H + + + ++ D L + + ++DGA G GA
Sbjct: 355 EDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAA 414
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
L++Y + G+ +L I+ +A+A+ IP+ +A N+G D D L+KL+ +
Sbjct: 415 EIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNK- 473
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +GE+ + G+ + + V +Q I S
Sbjct: 474 TYGINVFTGEIEDMVKNGVIEPIRVGKQAIES 505
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
D+ L+ G+++D HP MP VK+A I + +E +K
Sbjct: 210 DTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKK 248
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 504 LHPRVITEGFTQARLKALEVLESLKITT-PPSREILLDVARTSLRTKVERELADLLAEPN 562
+HP VI+EG+ A +A V++ + + +LL +A+TSL +K D LAE +
Sbjct: 117 VHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEIS 176
Query: 563 -----SVPSLRN 569
SV LR+
Sbjct: 177 YEAVKSVAELRD 188
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEK 160
L+ G++++ HP MP VK+A I + +E +K
Sbjct: 213 LINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKK 248
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 107/198 (54%), Gaps = 1/198 (0%)
Query: 295 FAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVE 354
FA + R +++R +ACGG+ SV L LG E +G E++ F
Sbjct: 294 FADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFT 353
Query: 355 ECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQN 414
C ++ TI+L+G + + +T+ ++ D + ++ I + +VV G GA E+ L++
Sbjct: 354 GCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRD 413
Query: 415 YKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNS 474
Y T+ GK +L I AYA+AL IIP+ + N+GFDA + L KL+ + G+ GVD+N+
Sbjct: 414 YSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GMWYGVDINT 472
Query: 475 GEVLNPTSAGIYDNLTVK 492
++ + A +++ V+
Sbjct: 473 EDIADNFEAFVWEPAMVR 490
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 118/220 (53%), Gaps = 13/220 (5%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSV------EGLEPAHLGYAGS 339
GID L F G +A+RR +R+++R++ A G T ++++ E E + LG A
Sbjct: 285 GIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEE 344
Query: 340 VFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
V + + +++ ++ K S +++L+G N + + ++ D L +K ++ +VVP
Sbjct: 345 VVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVP 404
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA 459
G GA E A L+NY ++ + +L I +A +LL+IP T+AVN+ D+ D + KL+
Sbjct: 405 GGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAF 464
Query: 460 CGEA---PGVA----VGVDVNSGEVLNPTSAGIYDNLTVK 492
EA P +G+D+ +G+ + AG+++ VK
Sbjct: 465 HNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVK 504
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGT---AMNSVEG---LEPAHLGYAGS 339
GID L F I+ +RR K+ ++ R++ A G T +M+++EG E ++LG
Sbjct: 301 GIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDE 360
Query: 340 VFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
V + +++ ++ S +I+L+G N ++L + + ++ D L +K T++ G VVP
Sbjct: 361 VVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVP 420
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQ 457
G G E A L N+ TV + +L I +A ALLIIPKT+AVN+ D+ + + KL+
Sbjct: 421 GGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLR 478
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 497 NSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPS--REILLDVARTSLRTKV 550
N + + +HP I GF A +A+ + + T+ + +E L+++A+TS+ +K+
Sbjct: 113 NELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKI 168
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 108/205 (52%), Gaps = 1/205 (0%)
Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
LF G++A+ A +ERL+L GG ++ + E LG + E ++GE+K
Sbjct: 290 LFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHF 349
Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
++ TI+L+G + L + + ++ D L + T+ D V G G E+ HA+
Sbjct: 350 SGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVT 409
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVN 473
+ GK + +++YA+AL ++P IA N+G+D+ D + +L+ A E A G+D+
Sbjct: 410 QLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTA-GLDMK 468
Query: 474 SGEVLNPTSAGIYDNLTVKRQIINS 498
G + + + GI ++ VKRQ++ S
Sbjct: 469 EGTIGDMSVLGITESFQVKRQVLLS 493
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G+D+ D + +L+ A E A G+D+ G + + + GI ++ VKRQ++ S
Sbjct: 440 NAGYDSADLVAQLRAAHSEGKTTA-GLDMKEGTIGDMSVLGITESFQVKRQVLLS 493
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
FA I R +M R+ A GG+ ++ ++P HLG E +G E++
Sbjct: 306 FFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLF 365
Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
+ C ++ T+LL+G + +A+ + ++ D + +K + + +V G GA E+ L+
Sbjct: 366 QGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLR 425
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA 459
+Y T+ GK ++ I A+A+AL +IP+ + N+GFDA + L KL+ A
Sbjct: 426 DYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLA 471
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 1/205 (0%)
Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
LF GI ++ A +ERL+L GG +++ + LG + E +LGE+ F
Sbjct: 297 LFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKF 356
Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
CK ++ TI+L+G TL + + ++ D L + T + V G G E+ A+
Sbjct: 357 SGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVD 416
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVN 473
+ GK L ++A+A AL +P +A N+GFD+ + + KL+ + + G+D+N
Sbjct: 417 TEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTS-GLDLN 475
Query: 474 SGEVLNPTSAGIYDNLTVKRQIINS 498
+G + + GI ++ +KR +++S
Sbjct: 476 NGTIADMRQLGIVESYKLKRAVVSS 500
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+GFD+ + + KL+ + + G+D+N+G + + GI ++ +KR +++S
Sbjct: 447 NAGFDSSELVSKLRSSIYNGISTS-GLDLNNGTIADMRQLGIVESYKLKRAVVSS 500
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 40/307 (13%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L+KGV+++ HP MPK V++A I E K + H+ +++ + ++
Sbjct: 202 LIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKP-KTKHKLDVTSVEDFKALQKYEK 260
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
E+++Q I NL + ++ G
Sbjct: 261 EKF-----------------------EEMIRQ--IKETGANLAVCQW------------G 283
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
D ++ L + + A+R +E +++A GG + L LG+AG V E G
Sbjct: 284 FDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFG 343
Query: 347 --EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAF 404
++K +E+CKN ++VTI ++G NK + + K ++ D L I+N I D VV G GA
Sbjct: 344 TTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA 403
Query: 405 EVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAP 464
E++ A+ + + ++A+A+AL +IP +A NSG + T+ +++ +
Sbjct: 404 EISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEV 463
Query: 465 GVAVGVD 471
A+G+D
Sbjct: 464 NPALGID 470
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 3 ELMEMKHKTPG---DSCLVKGVVLDHGARHPDMPKSVKNAH--ILTC 44
EL++++ K G D+ L+KGV++D HP MPK V++A ILTC
Sbjct: 185 ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTC 231
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAH--ILTC 152
L+KGV+++ HP MPK V++A ILTC
Sbjct: 202 LIKGVIVDKDFSHPQMPKQVEDAKIAILTC 231
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 16/227 (7%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
G+ +L R GI+ L+ + + RL CG T + + P LG +V +
Sbjct: 304 GVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEI 363
Query: 346 GEEKFTFV--EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTI--DDGAVVPGA 401
G ++ T E+ + ++ TI+L+G ++ L + A+ DG+ A+K + G ++PGA
Sbjct: 364 GGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGA 423
Query: 402 GAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACG 461
GA E+ + Y G +L I+ +A A ++P+T+A +G D + L L A
Sbjct: 424 GATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHN 483
Query: 462 EAPGVAV-------GVDVNSGE----VLNPTSAGIYDNLTVKRQIIN 497
AV GVD++ GE V + IYD L K+ IN
Sbjct: 484 VTEPGAVKTDHLYKGVDID-GESDEGVKDIREENIYDMLATKKFAIN 529
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 2/188 (1%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
G D ++ L + + A+R + +E ++++ G + + L LG ++E
Sbjct: 326 GFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEF 385
Query: 346 G--EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
G +++ +E+ K ++VT ++G NK + + + A+ D L ++N + D VV G GA
Sbjct: 386 GTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGA 445
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
EV A+ + +G + + +A+AL IP T+A NSG D TL L+ +
Sbjct: 446 AEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKE 505
Query: 464 PGVAVGVD 471
+GVD
Sbjct: 506 KISNIGVD 513
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 3 ELMEMKHKTPG---DSCLVKGVVLDHGARHPDMPKSV 36
+L++M+ + G DS L+ GV+LD HP MPK V
Sbjct: 222 DLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCV 258
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 500 IISGLHPRVITEGFTQARLKALEVLESLKITTPPS-----REILLDVARTSLRTKVEREL 554
I G+HP I GF +A A+ LE S R+ LL A+TSL +K+ +
Sbjct: 137 IQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKD 196
Query: 555 ADLLAEP--NSVPSLRNSATVNSGFDAQDTLVKLQEACG 591
D AE +V ++ + + FD L+K+Q G
Sbjct: 197 HDRFAEMAVEAVINVMDKDRKDVDFD----LIKMQGRVG 231
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 41/208 (19%)
Query: 162 DVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQ 221
D C++ +GV++N HP M + +KN I+ + S+EY+K G Q +I + +
Sbjct: 3 DSCVL--RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK---GESQTDIEITREED-- 55
Query: 222 IQHPTASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSD 281
+L+ + YI ++ + + PD ++
Sbjct: 56 ------------------------------FTRILQMEEEYIHQLCEDIIQLKPDVVITE 85
Query: 282 RYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVF 341
+ GI + R + A+RR ++ + R++ ACG ++ E L +G +
Sbjct: 86 K---GISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLL 142
Query: 342 E-HVLGEEKFTFVEECKNPQSVTILLKG 368
E +G+E FTF+ +CK+P++ TILL+G
Sbjct: 143 EIKKIGDEYFTFITDCKDPKACTILLRG 170
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGS 55
DSC+++GV+++ HP M + +KN I+ + S+EY+K S
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 44
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 120 DVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 162
D C++ +GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 3 DSCVL--RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE 43
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 86 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 120
GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 9 GVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE 43
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 7/201 (3%)
Query: 283 YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE 342
R + +L + I+ ++ +R ++E + G + V+ LG A E
Sbjct: 284 LRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEE 343
Query: 343 HVL-GEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
L G K + C +P ++VTI+++G NK + + + ++ D L I+ + A++ G
Sbjct: 344 VSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAG 403
Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE-- 458
GA E+ L Y T+ G I+A+A+A+ +IP T+A N+G + T+ +L+
Sbjct: 404 GGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRH 463
Query: 459 ACGEAPGVAVGVDVNSGEVLN 479
A GE G++V G + N
Sbjct: 464 AQGEK---TTGINVRKGGISN 481
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAEP 561
G+HP +I+E F +A K +E+L + S RE LL+ A TSL +KV + + LL+ P
Sbjct: 106 GIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLS-P 164
Query: 562 NSVPSL 567
SV ++
Sbjct: 165 MSVDAV 170
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 149/394 (37%), Gaps = 96/394 (24%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
++KGV+LN HP M + ++N ++ + +EY+K G Q I + K
Sbjct: 219 VLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKK---GESQTNIEIEK---------- 265
Query: 227 ASLIARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+L I E +V L + T G
Sbjct: 266 ----------------EEDWNRILQIEE---------EQVQLMCEQILAVRPTLVITEKG 300
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE-HVL 345
+ + + G LRR K+ + R++ G T +N VE L+ + +G +F+ ++
Sbjct: 301 VSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMI 360
Query: 346 GEEKFTFVEECKNPQSVT-----ILLKGPNKHTLAQTKDAV------------------- 381
G+E F+F++ CK P S + KG K + AV
Sbjct: 361 GDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSGH 420
Query: 382 -----------------RDGLRAIKNTID----DGAVV-----------PGAGAFEVAAW 409
R G + I N ID D V PG GA E+A
Sbjct: 421 HHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVS 480
Query: 410 HALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVG 469
L ++G + QA A+A+ IP+T+ N+G D L +L+ + G
Sbjct: 481 VKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQG-NFTTG 539
Query: 470 VDVNSGEVLNPTSAGIYDNLTVKRQIINSWIISG 503
+D + G++++ S GI++ +K+Q + + I S
Sbjct: 540 IDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESA 573
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 9 HKTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGS 55
K PG DS ++KGV+L+ HP M + ++N ++ + +EY+K S
Sbjct: 207 EKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGES 257
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 162
++KGV+LN HP M + ++N ++ + +EY+K +
Sbjct: 219 VLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGE 256
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSD 120
+GV+LN HP M + ++N ++ + +EY+K +
Sbjct: 221 KGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGE 256
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 4/194 (2%)
Query: 297 REGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFT-FVEE 355
+ I+ +R + ++ RL G TA+ + +G+ SV+ +G+ + F E
Sbjct: 291 KYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHE 350
Query: 356 CKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY 415
++ TI+L+G + + + AV DG+ K D +VPG GA E+ + +Y
Sbjct: 351 KEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSY 410
Query: 416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG 475
T G + I+ +AEA IP+ +A NSG A + + KL A + VG+D+ +
Sbjct: 411 GETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLY-AVHQEGNKNVGLDIEAE 469
Query: 476 --EVLNPTSAGIYD 487
V + AG+ D
Sbjct: 470 VPAVKDMLEAGVLD 483
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 38/189 (20%)
Query: 170 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASL 229
G+V++ H MP VKNA I + ++E +K+ EI AK QI P+
Sbjct: 3 GIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT-------EIE-AKV---QISDPSK-- 49
Query: 230 IARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDP 289
I + L Q ++ K+ K + + GID
Sbjct: 50 ----------------------IQDFLNQETNTFKQMVEKIKKSGANVVLCQK---GIDD 84
Query: 290 QSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEK 349
+ A+EGI A+RR K+ +ME+L+ A G + ++ L P+ LG A +V E +G+++
Sbjct: 85 VAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDR 144
Query: 350 FTFVEECKN 358
TFV CKN
Sbjct: 145 MTFVMGCKN 153
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 38/189 (20%)
Query: 170 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASL 229
G++++ HP MP VK+A I + +E +K PE +I+ P+
Sbjct: 3 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKK-------PEFDTNL----RIEDPS--- 48
Query: 230 IARAXXXXXXXXXXXXXXXVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDP 289
+I + L Q + + E+ K+ + + + GID
Sbjct: 49 ---------------------MIQKFLAQEENMLREMVDKIKSVGANVVITQK---GIDD 84
Query: 290 QSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEK 349
+ +R GI A+RR K+ +M++L+ A G + +++++ + + LG A V + +GE+
Sbjct: 85 MAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDY 144
Query: 350 FTFVEECKN 358
TFV KN
Sbjct: 145 MTFVTGSKN 153
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 3/178 (1%)
Query: 283 YRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE 342
R ++ +L ++ I+ ++ +R +E LS G + +E L A V E
Sbjct: 293 LRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEE 352
Query: 343 HVLGEEKFTFVEECKNPQ---SVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
K V +N +V+++++G N + +T+ ++ D L I+ + + ++
Sbjct: 353 IDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIA 412
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQ 457
G GA E+ L +++G Q +A AL +IP T+A N+G ++ + +L+
Sbjct: 413 GGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELR 470
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 374 LAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEA 433
L + K D L A + +++G +VPG G + A A++ ++G G + A
Sbjct: 387 LKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRA 445
Query: 434 LLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKR 493
L + IA N+G++ V +Q+ E G + +GE ++ AGI D V R
Sbjct: 446 LEEPARQIAENAGYEGS---VIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTR 502
Query: 494 QII-NSWIISGL 504
+ N+ I L
Sbjct: 503 SALQNAASIGAL 514
>pdb|2HQK|A Chain A, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
Derived From Clavularia
Length = 219
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 249 VLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGII 301
V V ++ + D +I E++LK F P+ + TG D + ++ R+G++
Sbjct: 98 VKVKSDISMEEDSFIYEIHLKGENFPPNGPVMQKKTTGWDASTERMYVRDGVL 150
>pdb|2AP9|A Chain A, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|B Chain B, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|C Chain C, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|D Chain D, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|E Chain E, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|F Chain F, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
Length = 299
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 503 GLHPRVITEGFTQ--ARLKALEVLESLK----ITTPPSREILLDVARTSLRTKVERELAD 556
G+HP V+ G Q A L+ L + K +TTP +LDVAR L +V REL +
Sbjct: 57 GIHPVVVHGGGPQITAXLRRLGIEGDFKGGFRVTTPE----VLDVARXVLFGQVGRELVN 112
Query: 557 LL 558
L+
Sbjct: 113 LI 114
>pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|B Chain B, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|C Chain C, Retinal Dehydrogenase Type Two With Nad Bound
pdb|1BI9|D Chain D, Retinal Dehydrogenase Type Two With Nad Bound
Length = 499
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 250 LVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRR 309
L +G L+K+A VN+ + + P + GID + G + A R
Sbjct: 201 LYMGALIKEAGFPPGVVNI-LPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRS 259
Query: 310 NMERLSLACGGTAMNSVEGLEPAHLGYA 337
N++R++L GG + N + A L YA
Sbjct: 260 NLKRVTLELGGKSPNII--FADADLDYA 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,066,794
Number of Sequences: 62578
Number of extensions: 711183
Number of successful extensions: 2121
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1899
Number of HSP's gapped (non-prelim): 190
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)