RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14945
(629 letters)
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 391 bits (1007), Expect = e-130
Identities = 179/344 (52%), Positives = 227/344 (65%), Gaps = 39/344 (11%)
Query: 160 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIA 219
KS L++G+VL+HGARHPDMP+ VKNA+ILTCN+S+EYEK+
Sbjct: 199 KSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKT---------------- 242
Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQ-----ADIYIAEVNLKMHKFA 274
++ A + V I EL K+ D +N K
Sbjct: 243 -EVNSGFFYSSAEQREKLVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQK----- 296
Query: 275 PDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHL 334
GIDP SLDL A+EGI+ALRRAKRRNMERL+LACGG A+NSVE L P L
Sbjct: 297 -----------GIDPPSLDLLAKEGILALRRAKRRNMERLTLACGGEALNSVEDLTPECL 345
Query: 335 GYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
G+AG V+E +GEEK+TF+EE KNP+S TIL+KGPN HT+AQ KDAVRDGLRA+KN I+D
Sbjct: 346 GWAGLVYETTIGEEKYTFIEEVKNPKSCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIED 405
Query: 395 GAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLV 454
VVPGAGAFE+AA+ L+ K +VKGK++LG++A+A ALL+IPKT+A NSGFDAQDTLV
Sbjct: 406 KCVVPGAGAFEIAAYRHLKENKKSVKGKAKLGVEAFANALLVIPKTLAENSGFDAQDTLV 465
Query: 455 KLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
KL++ E V VGVD+N+GE ++P GI+DN VK+Q+I S
Sbjct: 466 KLEDEHDEGGEV-VGVDLNTGEPIDPEIKGIWDNYRVKKQLIQS 508
Score = 101 bits (254), Expect = 1e-22
Identities = 38/53 (71%), Positives = 49/53 (92%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
MVE+MEMKHK+ D+ L++G+VLDHGARHPDMP+ VKNA+ILTCN+S+EYEK+
Sbjct: 190 MVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKT 242
Score = 84.4 bits (209), Expect = 4e-17
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
QIQHPTAS+IARA+TA D++TGDGTTSTV++IGELLKQA+ YI E
Sbjct: 66 QIQHPTASMIARAATAQDEITGDGTTSTVILIGELLKQAERYILE 110
Score = 80.2 bits (198), Expect = 8e-16
Identities = 30/46 (65%), Positives = 40/46 (86%)
Query: 118 KSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
KS L++G+VL+HGARHPDMP+ VKNA+ILTCN+S+EYEK++V
Sbjct: 199 KSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEV 244
Score = 75.5 bits (186), Expect = 3e-14
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 498 SWIISGLHPRVITEGFTQARLKALEVLESLKITTPPS--REILLDVARTSLRTKVERELA 555
+I+ G+HPR+ITEGF AR + LE L+ K+ T RE LL+VARTSLRTK+ +LA
Sbjct: 106 RYILEGVHPRIITEGFEIARKELLEFLDKFKVKTEDEVDREFLLNVARTSLRTKLPIDLA 165
Query: 556 DLLAE 560
D L E
Sbjct: 166 DQLTE 170
Score = 75.2 bits (185), Expect = 4e-14
Identities = 29/50 (58%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 75 DMQHQHGIREE---GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
+M+H+ G+VL+HGARHPDMP+ VKNA+ILTCN+S+EYEK++V
Sbjct: 195 EMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEV 244
Score = 65.9 bits (161), Expect = 3e-11
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
NSGFDAQDTLVKL++ E V VGVD+N+GE ++P GI+DN VK+Q+I S
Sbjct: 454 ENSGFDAQDTLVKLEDEHDEGGEV-VGVDLNTGEPIDPEIKGIWDNYRVKKQLIQS 508
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 361 bits (929), Expect = e-118
Identities = 138/213 (64%), Positives = 174/213 (81%), Gaps = 1/213 (0%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
GIDP SLD+ A+EGI+ALRRAKRRNMERL+LACGG AMNSV+ L P LGYAG V+E L
Sbjct: 254 GIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTL 313
Query: 346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFE 405
GEEK+TF+E KNP+S TIL+KGPN HT+ Q KDA+RDGLRA+KN I+D VVPGAGAFE
Sbjct: 314 GEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFE 373
Query: 406 VAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPG 465
VA + L+ +K +VKGK++LG+QA+A+ALL+IPKT+A NSG D Q+TLVKLQ+ E G
Sbjct: 374 VALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEG-G 432
Query: 466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
GVD+++GE ++P S GI+DN +VKRQI++S
Sbjct: 433 QVGGVDLDTGEPMDPESEGIWDNYSVKRQILHS 465
Score = 109 bits (274), Expect = 3e-25
Identities = 36/53 (67%), Positives = 49/53 (92%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
MVE+M+M+HK+ D+ L++G+VLDHGARHPDMPK V+NA+ILTCN+S+EYEK+
Sbjct: 186 MVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKT 238
Score = 94.2 bits (235), Expect = 3e-20
Identities = 36/45 (80%), Positives = 41/45 (91%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
QIQHPTAS+IARA+TA DD+TGDGTTS VL+IGELLKQA+ YI E
Sbjct: 62 QIQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQE 106
Score = 85.0 bits (211), Expect = 2e-17
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 117 EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLN 174
KSD L++G+VL+HGARHPDMPK V+NA+ILTCN+S+EYEK++V VV+N
Sbjct: 194 HKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYSVVIN 251
Score = 82.7 bits (205), Expect = 1e-16
Identities = 30/45 (66%), Positives = 39/45 (86%)
Query: 159 EKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKS 203
KSD L++G+VL+HGARHPDMPK V+NA+ILTCN+S+EYEK+
Sbjct: 194 HKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKT 238
Score = 80.4 bits (199), Expect = 6e-16
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 9/64 (14%)
Query: 76 MQHQHG-------IREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKG 128
MQ QH IR G+VL+HGARHPDMPK V+NA+ILTCN+S+EYEK++V
Sbjct: 190 MQMQHKSDSDTKLIR--GLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYS 247
Query: 129 VVLN 132
VV+N
Sbjct: 248 VVIN 251
Score = 78.5 bits (194), Expect = 3e-15
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 498 SWIISGLHPRVITEGFTQARLKALEVLESLKITTP--PSREILLDVARTSLRTKVERELA 555
+I G+HPR+ITEGF A+ KAL+ LES K+ RE+LL VARTSLRTK+ +LA
Sbjct: 102 RYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLA 161
Query: 556 DLLAE 560
D L E
Sbjct: 162 DQLTE 166
Score = 70.4 bits (173), Expect = 9e-13
Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
NSG D Q+TLVKLQ+ E G GVD+++GE ++P S GI+DN +VKRQI++S
Sbjct: 412 NSGLDVQETLVKLQDEYAEG-GQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHS 465
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 266 bits (683), Expect = 3e-82
Identities = 113/335 (33%), Positives = 173/335 (51%), Gaps = 49/335 (14%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L++G+VL+ G PDMPK ++N IL + +EYEK+ + + + +
Sbjct: 174 LIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKT-EKVIISTAEELERLLEAEE--- 229
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQAD---IYIAEVNLKMHKFAPDCSTSDRY 283
+ + E + A + I +
Sbjct: 230 --------KQLLPLL------------EKIVDAGVNLVIIQK------------------ 251
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
GID +L A+ GI+ALRR K+ ++ERL+ A G T ++S++ LEP LG AG V E
Sbjct: 252 --GIDDLALHFLAKNGILALRRVKKEDLERLAKATGATVVSSLDDLEPDELGSAGKVEER 309
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+GE+K TF+E C + + TILL+G H L + + A+ D L A+K + D VVPG GA
Sbjct: 310 EIGEDKTTFIEGCLSGKVATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGA 369
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E+ AL+ Y +V GK +LGI+A+AEAL +IP+T+A N+G D + L KL+ A +
Sbjct: 370 AELELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPIEVLAKLKAAHKKG 429
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
+G+D ++GE+ + AGI D L VKR + S
Sbjct: 430 NN--LGIDADTGEIGDMKEAGIIDPLKVKRSALKS 462
Score = 60.3 bits (147), Expect = 2e-09
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
+IQHP A L+ A+ + D+ GDGTT+ V++ GELL++A+ I
Sbjct: 39 EIQHPAAKLLVEAAKSQDEEVGDGTTTAVVLAGELLEEAEKLIEA 83
Score = 59.9 bits (146), Expect = 2e-09
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
+ +++++ + DS L++G+VLD G PDMPK ++N IL + +EYEK+
Sbjct: 158 NIGVIKIEGGSLEDSELIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKT 210
Score = 55.3 bits (134), Expect = 5e-08
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 498 SWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADL 557
I +G+HP I G+ A AL+ LE L I E LL+VARTSL +K+ ++L
Sbjct: 79 KLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDDEDLLNVARTSLNSKISSRESEL 138
Query: 558 LAE 560
L +
Sbjct: 139 LGK 141
Score = 52.6 bits (127), Expect = 4e-07
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L++G+VL+ G PDMPK ++N IL + +EYEK++
Sbjct: 174 LIEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEK 212
Score = 51.8 bits (125), Expect = 6e-07
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D + L KL+ A + + G+D ++GE+ + AGI D L VKR + S
Sbjct: 410 NAGLDPIEVLAKLKAAHKKGNNL--GIDADTGEIGDMKEAGIIDPLKVKRSALKS 462
Score = 50.3 bits (121), Expect = 2e-06
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 84 EEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
EG+VL+ G PDMPK ++N IL + +EYEK++
Sbjct: 175 IEGIVLDKGYLSPDMPKRLENPKILLLDCPLEYEKTEK 212
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 258 bits (663), Expect = 1e-79
Identities = 87/213 (40%), Positives = 136/213 (63%), Gaps = 1/213 (0%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
GID ++L A+ GI+A+RR ++ ++ER++ A G T ++ +E L P LG AG V E +
Sbjct: 237 GIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKI 296
Query: 346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFE 405
G+EK+TF+E CK + TILL+G + L + + ++ D L A++ ++DG +VPG GA E
Sbjct: 297 GDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAE 356
Query: 406 VAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPG 465
+ AL+ T+ GK +LGI+A+A+AL +IP+T+A N+G D + + KL+ E G
Sbjct: 357 IELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEG-G 415
Query: 466 VAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G DV +GE+++ AGI D L VKRQ + S
Sbjct: 416 GNAGGDVETGEIVDMKEAGIIDPLKVKRQALKS 448
Score = 69.0 bits (170), Expect = 2e-12
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEY 50
++ + + K + DS LV G+V D G P MPK ++NA IL + +EY
Sbjct: 181 VIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY 230
Score = 66.7 bits (164), Expect = 1e-11
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+++HP A L+ + + DD GDGTT+ V++ GELLK+A+ +A +H
Sbjct: 58 EVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAA---GIH 105
Score = 59.7 bits (146), Expect = 2e-09
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
G+HP I G+ +A KALE+L+ + + RE LL VA TSL +K+ D L E
Sbjct: 103 GIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGE 161
Score = 54.0 bits (131), Expect = 1e-07
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGV 171
LV G+V + G P MPK ++NA IL + +EY +I KG+
Sbjct: 197 LVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY-----VVIAEKGI 238
Score = 53.6 bits (130), Expect = 2e-07
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEY 200
LV G+V + G P MPK ++NA IL + +EY
Sbjct: 197 LVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY 230
Score = 52.0 bits (126), Expect = 6e-07
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D + + KL+ E G G DV +GE+++ AGI D L VKRQ + S
Sbjct: 395 NAGLDPIEVVTKLRAKHAEG-GGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKS 448
Score = 50.9 bits (123), Expect = 1e-06
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 84 EEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGV 129
G+V + G P MPK ++NA IL + +EY +I KG+
Sbjct: 198 VVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY-----VVIAEKGI 238
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 211 bits (540), Expect = 3e-61
Identities = 109/334 (32%), Positives = 176/334 (52%), Gaps = 43/334 (12%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGI--ANQIQH 224
L++G+V++ HP MPK V+NA I + +E +K EI I +Q+Q
Sbjct: 207 LIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKK-------TEIDAKIRITSPDQLQ- 258
Query: 225 PTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYR 284
+ + + + +M D T A++ +
Sbjct: 259 ---AFLEQEEAMLKEMV-DKIADT---------GANVVFCQ------------------- 286
Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHV 344
GID + A+ GI+A+RR K+ +ME+L+ A G + +++ L P LG A V E
Sbjct: 287 KGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERK 346
Query: 345 LGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAF 404
+G++K FVE CKNP++VTILL+G +H + + + A+ D LR + + ++DG VV G GA
Sbjct: 347 VGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAV 406
Query: 405 EVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAP 464
E+ L+ Y +V G+ +L ++A+A+AL IP+T+A N+G D DTLV+L+ A E
Sbjct: 407 EIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAA-HEKG 465
Query: 465 GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+DV +GEV++ G+ + L VK+Q I S
Sbjct: 466 NKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKS 499
Score = 52.7 bits (127), Expect = 4e-07
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKI-TTPPSREILLDVARTSLRTKVERELADLLAE 560
+HP VI EG+ A KALE+L+ + I P ++ L +A+TSL K D LA+
Sbjct: 110 NIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLAD 168
Score = 52.3 bits (126), Expect = 6e-07
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
I+HP A ++ + D+ GDGTT+ V++ GELL++A
Sbjct: 66 IEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKA 103
Score = 46.9 bits (112), Expect = 3e-05
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D DTLV+L+ A E G+DV +GEV++ G+ + L VK+Q I S
Sbjct: 446 NAGLDPIDTLVELRAA-HEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKS 499
Score = 44.6 bits (106), Expect = 1e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
D+ L++G+V+D HP MPK V+NA I + +E +K+
Sbjct: 204 DTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKT 243
Score = 41.5 bits (98), Expect = 0.001
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L++G+V++ HP MPK V+NA I + +E +K+++
Sbjct: 207 LIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEI 245
Score = 38.4 bits (90), Expect = 0.011
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
G+V++ HP MPK V+NA I + +E +K+++
Sbjct: 209 RGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEI 245
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 199 bits (507), Expect = 1e-56
Identities = 106/335 (31%), Positives = 172/335 (51%), Gaps = 45/335 (13%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
LV+G+V++ HP MPK V+NA I + +E EK EI I
Sbjct: 210 LVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEK-------TEIDAEIRI-------- 254
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD---CSTSDRY 283
+ I + L Q + + E+ K+ + C
Sbjct: 255 --------------------TDPDQIQKFLDQEEAMLKEMVDKIADAGANVVICQK---- 290
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
GID + A+ GI+A+RR K+ ++E+L+ A G ++S++ + + LGYAG V E
Sbjct: 291 --GIDDVAQHYLAKAGILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGYAGLVEER 348
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+GE+K FVE CKNP++VTILL+G +H + + + +++D L + + ++DG VV G GA
Sbjct: 349 KVGEDKMVFVEGCKNPKAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGA 408
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E+ L++Y + G+ +L I+A+A+AL IP+ +A N+G D D LV+L+ A E
Sbjct: 409 VEIEIALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELR-AKHEK 467
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +GE+ + G+ + L VK Q I S
Sbjct: 468 GNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKS 502
Score = 50.1 bits (120), Expect = 3e-06
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQAD 260
I+HP A ++ + D+ GDGTT+ V++ GELL++A+
Sbjct: 67 IEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAE 105
Score = 48.5 bits (116), Expect = 8e-06
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 502 SGLHPRVITEGFTQARLKALEVLESLKIT-TPPSREILLDVARTSLRTKVERELA-DLLA 559
+HP VI EG+ +A KALE+++ + +P R++L VA TSL +K E+A D LA
Sbjct: 110 QDIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTSKASAEVAKDKLA 169
Query: 560 E 560
Sbjct: 170 N 170
Score = 45.8 bits (109), Expect = 5e-05
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
D+ LV+G+V+D HP MPK V+NA I + +E EK+
Sbjct: 207 DTELVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKT 246
Score = 42.4 bits (100), Expect = 6e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
LV+G+V++ HP MPK V+NA I + +E EK+++
Sbjct: 210 LVEGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEI 248
Score = 40.4 bits (95), Expect = 0.002
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
EG+V++ HP MPK V+NA I + +E EK+++
Sbjct: 212 EGIVVDKEVVHPGMPKRVENAKIALLDAPLEVEKTEI 248
Score = 39.7 bits (93), Expect = 0.004
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D D LV+L+ A E G++V +GE+ + G+ + L VK Q I S
Sbjct: 449 NAGLDPIDALVELR-AKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKS 502
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 186 bits (475), Expect = 7e-52
Identities = 90/341 (26%), Positives = 148/341 (43%), Gaps = 48/341 (14%)
Query: 167 LVKGVVLNHG-ARHPDMP-KSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQH 224
+V+G+V + G MP K ++N IL + +E + +PE+ L I
Sbjct: 195 VVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIK-------KPELPLEI----VISS 243
Query: 225 PTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYR 284
LI +D G+ + V + + + V
Sbjct: 244 GKPLLIIA-----EDEEGEALATLV----VNILRGGANVVVVKAP--------------- 279
Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNM-ERLSLACGGTAMNSVEGLEPAHLGY--AGSVF 341
GID + I+ RR K+ ++ ERL+ G ++ ++ L LG AG V
Sbjct: 280 -GIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVE 338
Query: 342 EHVLGEEKFTFVEECKN--PQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
E G+ ++E K TIL++G + L + + + D L ++ +++G +VP
Sbjct: 339 ETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVP 398
Query: 400 GAGAFEVAAWHALQNYKNTVKG-KSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE 458
G GA E+ A L+ Y TV+G +LGI+A+A AL P+ +A N+G D + L KL+
Sbjct: 399 GGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRS 458
Query: 459 ACGEAPGVAVGVDVNSGEVLNPT-SAGIYDNLTVKRQIINS 498
A G+D +GE + AGI D L VKR + +
Sbjct: 459 AHATT---NYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKN 496
Score = 53.4 bits (129), Expect = 2e-07
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
+++HP A L+ + DD GDGTT+ V++ G LLK+A
Sbjct: 61 ELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEA 99
Score = 43.4 bits (103), Expect = 3e-04
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPT-SAGIYDNLTVKRQIINS 628
N+G D + L KL+ A G+D +GE + AGI D L VKR + +
Sbjct: 444 NAGLDPIEVLSKLRSAHATT---NYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKN 496
Score = 41.1 bits (97), Expect = 0.002
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHG-ARHPDMP-KSVKNAHILTCNISMEYEK 52
+ +++ + + +V+G+V D G MP K ++N IL + +E +K
Sbjct: 179 GIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKK 232
Score = 36.0 bits (84), Expect = 0.059
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 502 SGLHPRVITEGFTQARLKALEVLESLKITTPPSREIL-LDVARTSLRTKVER---ELADL 557
+G+HP VI G+ A KA+E L+ +I P S L +A TS+ +K E+ +L
Sbjct: 105 AGIHPTVIKRGYRLAVEKAVEELK--EIAKPVSDSEEELKIAITSVASKSANSDEEIGEL 162
Query: 558 LAE 560
+ E
Sbjct: 163 VVE 165
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 154 bits (391), Expect = 2e-40
Identities = 88/341 (25%), Positives = 163/341 (47%), Gaps = 41/341 (12%)
Query: 161 SDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIAN 220
D C++ KGV++N HP M + ++N I+ + +EY+K G Q + + K
Sbjct: 206 EDSCVL--KGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKK---GESQTNVEIMKE--- 257
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTS 280
+D +L+ + Y+ + + PD +
Sbjct: 258 -----------------EDWN------------RILQMEEEYVQLMCEDIIAVKPDLVIT 288
Query: 281 DRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSV 340
++ G+ + + I A+RR ++ + R++ ACG T +N E L + +G +
Sbjct: 289 EK---GVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGL 345
Query: 341 FE-HVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
FE +G+E FTF ECK+P++ TILL+G +K L + + ++D + +N + + ++P
Sbjct: 346 FEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLP 405
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA 459
G GA E+A L + ++G + +A A+AL IIP+T+A N G + TL +L+
Sbjct: 406 GGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAK 465
Query: 460 CGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWI 500
+ G+D +G++++ GI++ L VK Q + I
Sbjct: 466 HAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAI 506
Score = 39.7 bits (93), Expect = 0.004
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI 263
+ HP A + S D+ GDGTTS +++ GE+L A+ ++
Sbjct: 66 DVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFL 108
Score = 39.7 bits (93), Expect = 0.005
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGS 55
K PG DSC++KGV+++ HP M + ++N I+ + +EY+K S
Sbjct: 199 KIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGES 248
Score = 37.0 bits (86), Expect = 0.031
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N G + TL +L+ + G+D +G++++ GI++ L VK Q +
Sbjct: 450 NCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKT 504
Score = 33.2 bits (76), Expect = 0.40
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 119 SDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEK 160
D C++ KGV++N HP M + ++N I+ + +EY+K
Sbjct: 206 EDSCVL--KGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKK 245
Score = 30.9 bits (70), Expect = 2.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 86 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEK 118
GV++N HP M + ++N I+ + +EY+K
Sbjct: 213 GVMINKDVTHPKMRRYIENPRIVLLDCPLEYKK 245
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 152 bits (385), Expect = 7e-40
Identities = 72/216 (33%), Positives = 120/216 (55%), Gaps = 1/216 (0%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
G+ + + GI ALRR ++ + R++ ACG T +N E L + +G +FE
Sbjct: 250 GVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKK 309
Query: 346 -GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAF 404
G+E FTF+ ECK+P++ TILL+G +K L + + ++D + +N I + +VPG GA
Sbjct: 310 IGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGAT 369
Query: 405 EVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAP 464
E+A HAL +++G + +A A AL +IP+T+A N G + TL +L+ +
Sbjct: 370 EMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGE 429
Query: 465 GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINSWI 500
G+D +G++++ GI+D L VK Q + I
Sbjct: 430 NSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAI 465
Score = 40.4 bits (95), Expect = 0.003
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI 263
+ HP A + S D+ GDGTTS +++ GE+L A+ ++
Sbjct: 66 DVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFL 108
Score = 37.7 bits (88), Expect = 0.016
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEY 50
K PG DS ++ GV+L+ HP M + ++N I+ + +EY
Sbjct: 199 KIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY 243
Score = 36.1 bits (84), Expect = 0.059
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N G + TL +L+ + G+D +G++++ GI+D L VK Q +
Sbjct: 409 NCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKT 463
Score = 35.7 bits (83), Expect = 0.063
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 498 SWIISGLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELAD 556
++ G+HP VI + + +A AL++LE + I + R +L + ++ + TK +D
Sbjct: 106 PFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSD 165
Query: 557 LLAE 560
L+
Sbjct: 166 LMCN 169
Score = 32.7 bits (75), Expect = 0.71
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 126 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEY 158
+ GV+LN HP M + ++N I+ + +EY
Sbjct: 211 LDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY 243
Score = 32.7 bits (75), Expect = 0.71
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 168 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEY 200
+ GV+LN HP M + ++N I+ + +EY
Sbjct: 211 LDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY 243
Score = 29.6 bits (67), Expect = 5.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 86 GVVLNHGARHPDMPKSVKNAHILTCNISMEY 116
GV+LN HP M + ++N I+ + +EY
Sbjct: 213 GVMLNKDVTHPKMRRRIENPRIVLLDCPLEY 243
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 137 bits (348), Expect = 3e-37
Identities = 44/109 (40%), Positives = 70/109 (64%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
GID +L A+ GI+A+RR K+ ++ER++ A G T ++S+E L P LG A V E +
Sbjct: 101 GIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKI 160
Query: 346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD 394
GEEK TF+E CK ++ TILL+G + L + K ++ D L A++ +++
Sbjct: 161 GEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
Score = 68.6 bits (169), Expect = 3e-13
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEY 50
++++ ++ + DS LV GVV D G P MPK ++NA IL + +EY
Sbjct: 45 VIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY 94
Score = 53.6 bits (130), Expect = 4e-08
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVV 172
LV GVV + G P MPK ++NA IL + +EY +++ + +
Sbjct: 61 LVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------VVIAEKGI 102
Score = 53.6 bits (130), Expect = 5e-08
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEY 200
LV GVV + G P MPK ++NA IL + +EY
Sbjct: 61 LVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY 94
Score = 50.2 bits (121), Expect = 6e-07
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 84 EEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVV 130
GVV + G P MPK ++NA IL + +EY +++ + +
Sbjct: 62 VVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------VVIAEKGI 102
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 143 bits (362), Expect = 2e-36
Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 13/220 (5%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTA------MNSVEGLEPAHLGYAGS 339
GID L F G +A+RR K+ ++ R++ A G T + E +P++LG A
Sbjct: 283 GIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEE 342
Query: 340 VFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
V + +G+++ ++ K S +I+L+G N L + + ++ D L +K T++ +VVP
Sbjct: 343 VVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVP 402
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL--- 456
G GA E A L+N+ T+ + +L I +AEALL+IPKT+AVN+ DA + + KL
Sbjct: 403 GGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAY 462
Query: 457 ----QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVK 492
Q + G+D+ +G+V + AG+ + K
Sbjct: 463 HAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSK 502
Score = 43.0 bits (102), Expect = 4e-04
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
++HP A ++ + D GDGTTS V++ ELLK+A+ + + K+H
Sbjct: 59 VEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQ---KIH 105
Score = 34.2 bits (79), Expect = 0.25
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 497 NSWIISGLHPRVITEGFTQARLKALEVL-ESLKITTPP-SREILLDVARTSLRTKV 550
N + +HP I G+ A +A++ + E L I+ +E L++VA+TS+ +K+
Sbjct: 97 NELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKI 152
Score = 33.4 bits (77), Expect = 0.40
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 166 ILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQG 206
LV G LN MP VKNA I + +++ K G
Sbjct: 201 YLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLG 241
Score = 32.3 bits (74), Expect = 0.81
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 124 ILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEK 160
LV G LN MP VKNA I + +++ K
Sbjct: 201 YLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTK 237
Score = 31.1 bits (71), Expect = 1.9
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G +S LV G L+ MP VKNA I + +++ K
Sbjct: 191 KAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTK 237
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 137 bits (346), Expect = 2e-34
Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 8/208 (3%)
Query: 295 FAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVE 354
FA I R +++R++ A GG+ +V + LG G E +G E++
Sbjct: 299 FADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFT 358
Query: 355 ECKNPQSVTILLKGPNKHTLAQTKDAVRDGL----RAIKNTIDDGAVVPGAGAFEVAAWH 410
C ++ TI+L+G + + + + ++ D + RAIKN +VV G GA E+
Sbjct: 359 GCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKN----DSVVAGGGAIEMELSK 414
Query: 411 ALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGV 470
L++Y T+ GK +L I A+A+AL IIP+ + N+GFDA D L KL++ + G GV
Sbjct: 415 YLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGV 474
Query: 471 DVNSGEVLNPTSAGIYDNLTVKRQIINS 498
D+N+ + + A +++ VK + +
Sbjct: 475 DINNEGIADNFEAFVWEPSLVKINALTA 502
Score = 50.0 bits (120), Expect = 3e-06
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 45/122 (36%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSD 281
I HP A + + + D GDGTTS V++ GE LK+A +I +
Sbjct: 67 IVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIED---------------- 110
Query: 282 RYRTGIDPQSLDLFAREGIIALRRAKRRNMERLS------------------LACGGTAM 323
G+ PQ + I R+A + +E++ C TA+
Sbjct: 111 ----GVHPQII-------IRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATAL 159
Query: 324 NS 325
NS
Sbjct: 160 NS 161
Score = 44.2 bits (105), Expect = 2e-04
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+GFDA D L KL++ + G GVD+N+ + + A +++ VK + +
Sbjct: 448 NAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTA 502
Score = 41.5 bits (98), Expect = 0.001
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-----REILLDVARTSLRTK 549
G+HP++I G+ +A A+E ++ + + RE+L A T+L +K
Sbjct: 111 GVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSK 162
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 134 bits (340), Expect = 1e-33
Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 13/224 (5%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSV------EGLEPAHLGYAGS 339
GID L F G + +RR K+ +++R++ A GGT ++++ E + ++LG+A
Sbjct: 287 GIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADE 346
Query: 340 VFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVP 399
V + + +++ ++ K S +I+L+G N L + + ++ D L +K T++ +VVP
Sbjct: 347 VVQERIADDECILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVP 406
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA 459
G GA E A L+N+ T+ + +L I +AEALLIIPKT+AVN+ D+ + + KL+
Sbjct: 407 GGGAVEAALSIYLENFATTLGSREQLAIAEFAEALLIIPKTLAVNAAKDSTELVAKLRAY 466
Query: 460 CGEAPGVA-------VGVDVNSGEVLNPTSAGIYDNLTVKRQII 496
A G+D+++G++ + AG+ + K + +
Sbjct: 467 HAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSL 510
Score = 44.7 bits (106), Expect = 1e-04
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
++HP A ++ + D GDGTTS V++ ELLK+A+ + K+H
Sbjct: 63 VEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRANELVKN---KVH 109
Score = 32.4 bits (74), Expect = 0.87
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 497 NSWIISGLHPRVITEGFTQARLKALEVL-ESLKITTPP-SREILLDVARTSLRTKVEREL 554
N + + +HP I G+ A +A++ + E+L ++ +E L++VA+TS+ +K+
Sbjct: 101 NELVKNKVHPTSIISGYRLALKEAVKYIKENLSVSVDTLGKEALINVAKTSMSSKIIGLD 160
Query: 555 ADLLAE 560
+D +
Sbjct: 161 SDFFSN 166
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 122 bits (308), Expect = 2e-29
Identities = 56/204 (27%), Positives = 106/204 (51%), Gaps = 1/204 (0%)
Query: 295 FAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVE 354
FA I R +M+R+ ACGG+ ++ LE LG E +G E++
Sbjct: 301 FADHNIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNLFT 360
Query: 355 ECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQN 414
C + ++ TI+L+G + + + + ++ D + ++ + + +V G GA E+ L++
Sbjct: 361 GCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAIEMELSKCLRD 420
Query: 415 YKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNS 474
Y T+ GK +L I A+A+AL +IP+ + N+GFD+ + L KL+ A G GVD+N+
Sbjct: 421 YSKTIDGKQQLIINAFAKALEVIPRQLCENAGFDSIEILNKLRSA-HAKGGKWYGVDINT 479
Query: 475 GEVLNPTSAGIYDNLTVKRQIINS 498
++ + +++ VK + +
Sbjct: 480 EDIGDNFENFVWEPALVKINALKA 503
Score = 44.8 bits (106), Expect = 1e-04
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
I HP A + + + D GDGTTS V++ GELLK+A +I E
Sbjct: 69 IVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEE 112
Score = 39.7 bits (93), Expect = 0.005
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS----REILLDVARTSLRTKVERELADLL 558
G+HP++I G+ +A A+E ++ + +T RE+L A T+L +K+ +
Sbjct: 113 GVHPQLIIRGYREALSLAIEKIKEIAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEFF 172
Query: 559 AE 560
++
Sbjct: 173 SK 174
Score = 35.9 bits (83), Expect = 0.063
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+GFD+ + L KL+ A G GVD+N+ ++ + +++ VK + +
Sbjct: 450 NAGFDSIEILNKLRSA-HAKGGKWYGVDINTEDIGDNFENFVWEPALVKINALKA 503
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 120 bits (304), Expect = 6e-29
Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 5/207 (2%)
Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
LFA GI+A+ A MERL+ A G +++ + E LG+ + E ++GE+K
Sbjct: 305 LFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRF 364
Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
C ++ TI+L+G + H L + + ++ D L + T+ D VV G G E+ +A++
Sbjct: 365 SGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVE 424
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEA--CGEAPGVAVGVD 471
V+GK L I+A+A+AL IP IA N G+D+ + + KL+ G G+D
Sbjct: 425 ELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGN---KTAGID 481
Query: 472 VNSGEVLNPTSAGIYDNLTVKRQIINS 498
+ G V + GI ++ VK + S
Sbjct: 482 MEKGTVGDMKELGITESYKVKLSQLCS 508
Score = 41.9 bits (99), Expect = 9e-04
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+ +P A ++ S D+ GDGTTS V++ GELL++A+ + + K+H
Sbjct: 78 LDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQ---KIH 124
Score = 33.8 bits (78), Expect = 0.31
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 504 LHPRVITEGFTQARLKALEVLESL----KITTPPSREILLDVARTSLRTKVERELADLLA 559
+HP+ I EG+ A A + LE + +E LL++ART+L +K+ D A
Sbjct: 123 IHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFA 182
Query: 560 E 560
+
Sbjct: 183 K 183
Score = 33.5 bits (77), Expect = 0.38
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 574 NSGFDAQDTLVKLQEA--CGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N G+D+ + + KL+ G G+D+ G V + GI ++ VK + S
Sbjct: 455 NGGYDSAELVSKLRAEHYKGN---KTAGIDMEKGTVGDMKELGITESYKVKLSQLCS 508
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 119 bits (301), Expect = 8e-29
Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 4/204 (1%)
Query: 297 REGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFVEEC 356
+ GI+ ++ + + RL G T + + P +GY SV+ +G+ K +
Sbjct: 251 KYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQN 310
Query: 357 KNPQSV-TILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY 415
K + TI+L+G ++ L + A+ DG+ K+ DG VPGAGA E+ L+ Y
Sbjct: 311 KEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEY 370
Query: 416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG 475
G + I+ +AEA ++P+T+A N+G DA + L +L A + + GVD+ SG
Sbjct: 371 GEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKG-NKSAGVDIESG 429
Query: 476 E--VLNPTSAGIYDNLTVKRQIIN 497
+ + AGI+D+L K+ I
Sbjct: 430 DEGTKDAKEAGIFDHLATKKWAIK 453
Score = 41.1 bits (97), Expect = 0.001
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 503 GLHPRVITEGFTQARLKALEVLESL---KITTPPSREILLDVARTSLRTKV---ERELAD 556
GLHP I EG+ +A KALE+LE L KI ++E + +T++ +K E L+
Sbjct: 103 GLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSP 162
Query: 557 LLAE 560
L+AE
Sbjct: 163 LVAE 166
Score = 39.9 bits (94), Expect = 0.003
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQAD 260
+QHP A L+ AS ++ GDGT V++ GELL++A+
Sbjct: 59 VQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAE 97
Score = 36.0 bits (84), Expect = 0.053
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGE--VLNPTSAGIYDNLTVKRQIIN 627
N+G DA + L +L A + + GVD+ SG+ + AGI+D+L K+ I
Sbjct: 399 NAGLDATEVLSELYAAHQKG-NKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIK 453
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 116 bits (293), Expect = 1e-27
Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 1/205 (0%)
Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
LFA GI+A+ A +ERL+L GG ++ + E LG + E ++GE+K
Sbjct: 293 LFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRF 352
Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
++ TI+L+G ++ L + + ++ D L + T+ D VV G G E+ A++
Sbjct: 353 SGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVE 412
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVN 473
GK L I+A+A+AL +P IA N+G+D+ + + +L+ A A G+D+
Sbjct: 413 ELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTA-GLDMR 471
Query: 474 SGEVLNPTSAGIYDNLTVKRQIINS 498
G V + GI ++ VKRQ++ S
Sbjct: 472 KGTVGDMKELGITESFKVKRQVLLS 496
Score = 42.3 bits (100), Expect = 7e-04
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+ +P A ++ S DD GDGTTS ++ ELL++A+ +A+ K+H
Sbjct: 66 VDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQ---KIH 112
Score = 38.8 bits (91), Expect = 0.007
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 504 LHPRVITEGFTQARLKALEVLESLKITTPPS----REILLDVARTSLRTKVERELADLLA 559
+HP+ I EG+ A A E L S + RE LL++ART+L +K+ + + A
Sbjct: 111 IHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFA 170
Query: 560 E 560
E
Sbjct: 171 E 171
Score = 34.6 bits (80), Expect = 0.16
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G+D+ + + +L+ A A G+D+ G V + GI ++ VKRQ++ S
Sbjct: 443 NAGYDSAELVAQLRAAHYNGNTTA-GLDMRKGTVGDMKELGITESFKVKRQVLLS 496
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 115 bits (289), Expect = 5e-27
Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 2/213 (0%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
G D ++ L + G+ A+R +E +++A GG + E L P LG AG V E
Sbjct: 296 GFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISF 355
Query: 346 G--EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
G ++K +E C N ++VTI ++G NK + + K ++ D L ++N I D +V G GA
Sbjct: 356 GTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGA 415
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E++ A++ + G + ++A+A+AL IP +A NSG + +TL +++ +
Sbjct: 416 AEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKE 475
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII 496
+G+D + +++ L K+Q I
Sbjct: 476 KNPHLGIDCLGRGTNDMKEQKVFETLISKKQQI 508
Score = 52.7 bits (127), Expect = 4e-07
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 3 ELMEMKHKTPG---DSCLVKGVVLDHGARHPDMPKSVKNAHI--LTC 44
EL++++ K G D+ LVKG+V+D HP MPK VK+A I LTC
Sbjct: 198 ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTC 244
Score = 43.8 bits (104), Expect = 2e-04
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 123 IILVKGVVLNHGARHPDMPKSVKNAHI--LTC 152
LVKG+V++ HP MPK VK+A I LTC
Sbjct: 213 TKLVKGIVIDKDFSHPQMPKEVKDAKIAILTC 244
Score = 43.8 bits (104), Expect = 2e-04
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 165 IILVKGVVLNHGARHPDMPKSVKNAHI--LTC 194
LVKG+V++ HP MPK VK+A I LTC
Sbjct: 213 TKLVKGIVIDKDFSHPQMPKEVKDAKIAILTC 244
Score = 41.9 bits (99), Expect = 8e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKVERELADLLA 559
G+HP I +G+ QA A+E LE + S +E L+ A TSL +K+ A
Sbjct: 118 GIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFA 177
Query: 560 E 560
E
Sbjct: 178 E 178
Score = 40.4 bits (95), Expect = 0.003
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
+ H A L+ S + DD GDGTT V++ G LL+QA
Sbjct: 73 DVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQA 111
Score = 38.0 bits (89), Expect = 0.013
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHI--LTC 110
+G+V++ HP MPK VK+A I LTC
Sbjct: 217 KGIVIDKDFSHPQMPKEVKDAKIAILTC 244
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 109 bits (274), Expect = 3e-25
Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 1/205 (0%)
Query: 294 LFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFTFV 353
LFA GI+++ A +ERL+L GG +++ + E LG + E ++GE+K
Sbjct: 293 LFADAGIMSIEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKF 352
Query: 354 EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQ 413
K ++ TI+L+G + L + + ++ D L + T+ + V G G E+ A+
Sbjct: 353 SGVKAGEACTIVLRGATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSKAVD 412
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVN 473
+ GK L ++A+A AL +P +A N+GFD+ + + +L+ A G+D+N
Sbjct: 413 TEAQNIPGKKALAVEAFARALRQLPTILADNAGFDSSELVAQLRAAHYNGNSTM-GLDMN 471
Query: 474 SGEVLNPTSAGIYDNLTVKRQIINS 498
G + + GI ++ +KR +++S
Sbjct: 472 EGTIADMRQLGIVESYKLKRAVVSS 496
Score = 38.7 bits (90), Expect = 0.010
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 222 IQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+ +P A ++ S DD GDGTTS ++ ELL++A+ I N K+H
Sbjct: 66 LDNPAAKVLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLI---NQKIH 112
Score = 36.0 bits (83), Expect = 0.059
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 536 EILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATV---NSGFDAQDTLVKLQEACGE 592
E+L+ A + + + A LA +LR T+ N+GFD+ + + +L+ A
Sbjct: 404 EMLMSKAVDTEAQNIPGKKA--LAVEAFARALRQLPTILADNAGFDSSELVAQLRAAHYN 461
Query: 593 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
G+D+N G + + GI ++ +KR +++S
Sbjct: 462 GNSTM-GLDMNEGTIADMRQLGIVESYKLKRAVVSS 496
Score = 31.8 bits (72), Expect = 1.4
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 504 LHPRVITEGFTQARLKALEVLESLKITTPPS----REILLDVARTSLRTKVERELADLLA 559
+HP+ I EG+ A AL+ L + RE L+++ART+L +K+ + D A
Sbjct: 111 IHPQTIIEGYRLATKAALDALTKSAVDNSSDKTKFREDLINIARTTLSSKILSQHKDHFA 170
Query: 560 E 560
+
Sbjct: 171 Q 171
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 107 bits (269), Expect = 1e-24
Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 4/204 (1%)
Query: 297 REGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEKFT-FVEE 355
R GI+ L+ + + RL G T + + P LGY SV+ +G +K T F +E
Sbjct: 299 RYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTVFKQE 358
Query: 356 CKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY 415
+ + TI+L+G K+ L + A+ DG+ +K + DG +PGAGA E+ L Y
Sbjct: 359 NGDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKY 418
Query: 416 KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG 475
G + I+ +AEA IIP+T+A N+G + + + KL A + + G+D+ +
Sbjct: 419 AEKTPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKG-NTSKGIDIEAE 477
Query: 476 --EVLNPTSAGIYDNLTVKRQIIN 497
V + + AGIYD L K+ I
Sbjct: 478 SDGVKDASEAGIYDMLATKKFAIK 501
Score = 41.6 bits (98), Expect = 0.001
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 503 GLHPRVITEGFTQARLKALEVLESL---KITTPPSREILLDVARTSLRTKV---ERELAD 556
GLHP I +G+ A KA+EVLE L +I ++ L+ + S+ +K E L+
Sbjct: 113 GLHPSEIIKGYEMALKKAMEVLEELVVWEIEDLRDKKELIKALKASISSKQYGNEDFLSQ 172
Query: 557 LLAE 560
L+A+
Sbjct: 173 LVAK 176
Score = 38.2 bits (89), Expect = 0.013
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI 263
++QHP A L+ AS ++ GDGT +++ GELL +A+ I
Sbjct: 68 EVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLNKAEELI 110
Score = 29.7 bits (67), Expect = 5.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG--EVLNPTSAGIYDNLTVKRQIIN 627
N+G + + + KL A + + G+D+ + V + + AGIYD L K+ I
Sbjct: 447 NAGLNPNEVIPKLYAAHKKG-NTSKGIDIEAESDGVKDASEAGIYDMLATKKFAIK 501
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 102 bits (257), Expect = 5e-23
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 2/213 (0%)
Query: 286 GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVL 345
G D ++ L + + A+R + +E +++A GG + + L LG AG V E
Sbjct: 300 GFDDEANHLLLQNDLPAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREISF 359
Query: 346 G--EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
G +++ +E+CKN ++VTI ++G NK + + K ++ D L ++N I D +V G GA
Sbjct: 360 GTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGA 419
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E++ A+ + G + I+A+A+AL IP +A NSG D TL L+ +
Sbjct: 420 AEISCSLAVSQEADKYSGVEQYAIRAFADALETIPMALAENSGLDPIGTLSTLKSLQLKE 479
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQII 496
+GVD + +++ L K+Q I
Sbjct: 480 KNPNIGVDCLGYGTNDMKEQFVFETLIGKKQQI 512
Score = 44.0 bits (104), Expect = 2e-04
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 3 ELMEMKHKTPG---DSCLVKGVVLDHGARHPDMPKSVKNAH--ILTC 44
+L++++ K G D+ L+KG+++D HP MPK VK+A ILTC
Sbjct: 202 DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTC 248
Score = 40.9 bits (96), Expect = 0.002
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
+ +P A L+ S + DD GDGTT V++ G LL+QA
Sbjct: 77 DVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQA 115
Score = 37.9 bits (88), Expect = 0.017
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAH--ILTC 152
L+KG++++ HP MPK VK+A ILTC
Sbjct: 219 LIKGIIIDKDFSHPQMPKEVKDAKIAILTC 248
Score = 37.9 bits (88), Expect = 0.017
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAH--ILTC 194
L+KG++++ HP MPK VK+A ILTC
Sbjct: 219 LIKGIIIDKDFSHPQMPKEVKDAKIAILTC 248
Score = 33.6 bits (77), Expect = 0.34
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 86 GVVLNHGARHPDMPKSVKNAH--ILTC 110
G++++ HP MPK VK+A ILTC
Sbjct: 222 GIIIDKDFSHPQMPKEVKDAKIAILTC 248
Score = 32.5 bits (74), Expect = 0.75
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 503 GLHPRVITEGFTQARLKALEVLESL--KITTPPS-REILLDVARTSLRTKVERELADLLA 559
G+HP I EGF +A A+E LE + +I+ + RE L+ A+TSL +K+ + A
Sbjct: 122 GIHPIKIAEGFEEAARVAVEHLEEISDEISADNNNREPLIQAAKTSLGSKIVSKCHRRFA 181
Query: 560 E 560
E
Sbjct: 182 E 182
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 92.3 bits (230), Expect = 1e-19
Identities = 57/199 (28%), Positives = 101/199 (50%), Gaps = 6/199 (3%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
R + +L A+ I+ ++ +R +E + G + S++ LG A V E
Sbjct: 284 RDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEV 343
Query: 344 VLGEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
LG+ K + KNP ++VTIL++G NK L + + ++ D L I+ + A++PG G
Sbjct: 344 SLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGG 403
Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE--AC 460
A E+ L + T+ G + ++A+A+AL +IP T+A N+G + + +L+ A
Sbjct: 404 APEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQ 463
Query: 461 GEAPGVAVGVDVNSGEVLN 479
GE G++V G + N
Sbjct: 464 GE---KNAGINVRKGAITN 479
Score = 48.1 bits (115), Expect = 1e-05
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
G+HP VI+E F A KA+E+L+S+ I + RE L+ A TSL +KV + + LLA
Sbjct: 103 GIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAP 161
Score = 39.2 bits (92), Expect = 0.006
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQAD 260
+ HP A ++ S A D GDGTTS V++ G LL +
Sbjct: 58 SVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACE 97
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 91.0 bits (226), Expect = 3e-19
Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 6/199 (3%)
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
R ++ +L A+ I+ ++ +R +E + G + S++ LG A V E
Sbjct: 285 RDAVNDLALHFLAKMKIMVVKDIEREEIEFICKTIGCKPIASIDHFTADKLGSAELVEEV 344
Query: 344 VLGEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
K + +N ++VT++++G NK + + + ++ D L I+ + ++ G G
Sbjct: 345 DSDGGKIIKITGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGG 404
Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE--AC 460
A E+ L Y T+KG ++A+A+AL +IP T+A N+G + + +L+ A
Sbjct: 405 APEIEIARRLSKYARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIKVVTELRNRHAN 464
Query: 461 GEAPGVAVGVDVNSGEVLN 479
GE G+ V G + N
Sbjct: 465 GEK---TAGISVRKGGITN 480
Score = 50.2 bits (120), Expect = 2e-06
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLA 559
G+HP +I+E F A +A+++L+ + I S RE LL A TSL +KV + + LLA
Sbjct: 104 GIHPTIISESFQSAADEAIKILDEMSIPVDLSDREQLLKSATTSLSSKVVSQYSSLLA 161
Score = 41.3 bits (97), Expect = 0.001
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 181 DMPKSVKNAHILTCNISMEYEKSSQG--GHQPEISLAKG----------IANQIQ--HPT 226
D P+ V+ ++I+ + ++S G G I KG I Q+ HP
Sbjct: 5 DKPQDVRTSNIVAAKAVADAIRTSLGPKGMDKMIQDGKGEVIITNDGATILKQMAVLHPA 64
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELL 256
A ++ S A D GDGTTS V++ G LL
Sbjct: 65 AKMLVELSKAQDIEAGDGTTSVVILAGALL 94
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 48.8 bits (117), Expect = 7e-06
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 378 KDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYK-----NTVKGKSRLGIQAYAE 432
KD + D L A + +++G +VPG G VA A + N + R G++
Sbjct: 405 KDRIEDALNATRAAVEEG-IVPGGG---VALLRASKLLDKLEEDNELTPDQRTGVKIVRN 460
Query: 433 ALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNL-TV 491
AL + K IA N+G + + K+ E + G D +GE +N AGI D V
Sbjct: 461 ALRLPTKQIAENAGVEGAVVVEKIL----EKKDPSFGYDAQTGEYVNMFEAGIIDPTKVV 516
Query: 492 KRQIINSWIISGL 504
+ ++++ ++ L
Sbjct: 517 RSALVDAASVASL 529
Score = 30.3 bits (69), Expect = 3.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
A LI + ++ +D GDGTT+ ++ + ++ +A
Sbjct: 82 AQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAA 120
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 43.9 bits (103), Expect = 2e-04
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 364 ILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKS 423
I + G + + + KD V D + A + +++G +VPG G + A L+ K T
Sbjct: 379 IRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQ 436
Query: 424 RLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSA 483
+ G++ +AL + IA+N+G D + K+ E + G D +GE N S
Sbjct: 437 KTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEK----EQYSYGFDSQTGEYGNLVSK 492
Query: 484 GIYDNLTVKRQIINS 498
GI D V R I +
Sbjct: 493 GIIDPTKVVRTAIQN 507
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 43.0 bits (102), Expect = 4e-04
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 374 LAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEA 433
+ + K + D L A + +++G +VPG G + A AL+ K +GI A
Sbjct: 387 MKEKKLRIEDALNATRAAVEEG-IVPGGGVALLRAAAALEGLKGD-GEDEAIGIDIVKRA 444
Query: 434 LLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKR 493
L + IA N+G D K++E G G + +GE + AGI D V R
Sbjct: 445 LEAPLRQIAENAGLDGAVVAEKVKELKGN-----FGFNAATGEYEDLVEAGIIDPTKVTR 499
Query: 494 Q-IINSWIISGL 504
+ N+ I+GL
Sbjct: 500 SALQNAASIAGL 511
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 41.4 bits (98), Expect = 8e-04
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 292 LDLFAREGIIALRRAKRRNMERLSLACGG---TAMNSVEGLEPAHLGYAGSV----FEHV 344
DL GI + K +ER+S G ++M+ + L LG S +
Sbjct: 145 QDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDL--LTSPKLGTCESFRVRTYVEE 202
Query: 345 LGEEK-FTFVEECKNPQSVTILLKGPNKHTLAQTKDAV 381
G K F E C TILL+G + L + K V
Sbjct: 203 HGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVV 240
Score = 37.6 bits (88), Expect = 0.013
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 11 TPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHAQVRE 69
+P DS +V GVV H MP +KN IL +EY++ + P Q +E
Sbjct: 59 SPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKE 117
Score = 30.3 bits (69), Expect = 2.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQG 206
+V GVV H MP +KN IL +EY++
Sbjct: 65 VVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVENK 104
Score = 29.1 bits (66), Expect = 6.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEK 160
+V GVV H MP +KN IL +EY++
Sbjct: 65 VVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQR 100
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 42.0 bits (99), Expect = 8e-04
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 364 ILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKS 423
I + + + + KD V D L A + +++G +VPG G + A AL T G
Sbjct: 379 IRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDK-LETANGDQ 436
Query: 424 RLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSA 483
R G++ AL + IA N+G + + KL+E G G + + E + +
Sbjct: 437 RTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKPG-----GYGFNAATNEYGDLYAQ 491
Query: 484 GIYDNLTVKR 493
G+ D + V R
Sbjct: 492 GVIDPVKVVR 501
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 40.5 bits (96), Expect = 0.002
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 378 KDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLII 437
KD V D L A + +++G +VPG G + A AL K G +LGI+ AL
Sbjct: 390 KDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKAL-NGDEKLGIEIVRRALEAP 447
Query: 438 PKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQ-II 496
+ IA N+G D + K+ E+ G D +GE ++ AGI D V R +
Sbjct: 448 LRQIAENAGVDGSVVVEKVLESPDG-----FGYDAATGEYVDMIEAGIIDPTKVVRSALQ 502
Query: 497 NSWIISGL 504
N+ ++ L
Sbjct: 503 NAASVASL 510
Score = 32.4 bits (75), Expect = 0.69
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 212 ISLAKGI--ANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIA 264
+++AK I + ++ A L+ ++ +D+ GDGTT+ ++ ++K+ +A
Sbjct: 51 VTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVA 105
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 37.0 bits (86), Expect = 0.030
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 374 LAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEA 433
+ + KD V D L A + +++G +VPG G + A AL+ K GI A
Sbjct: 389 VKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGLK-GANADETAGIDIVRRA 446
Query: 434 LLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKR 493
L + IA N+GF+ + K+ E G G + +GE + AGI D V R
Sbjct: 447 LEEPLRQIATNAGFEGSVVVGKVAELPGNF-----GFNAQTGEYGDMVEAGIIDPAKVTR 501
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 35.6 bits (82), Expect = 0.088
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 376 QTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALL 435
+ KD V D L A + + +G +VPG G + A A+ N + GI +AL
Sbjct: 391 EKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRI-NNDNADVQAGINIVLKALE 448
Query: 436 IIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKR 493
+ IA N+G + + K+ E E G D + E ++ + GI D V R
Sbjct: 449 APIRQIAENAGVEGSIVVGKILENKSE----TFGFDAQTEEYVDMVAKGIIDPAKVVR 502
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 33.2 bits (76), Expect = 0.43
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 383 DGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY-KNTVKGKSRLGIQAYAEALLIIPKTI 441
D + A K +++G +VPG GA V L+ + KN +K +G A A+L K I
Sbjct: 397 DAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRI 455
Query: 442 AVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKR 493
A N+G + + K+QE E +G + + + +N AGI D V R
Sbjct: 456 AENAGKNGSVIIEKVQEQDFE-----IGYNAANNKFVNMYEAGIIDPAKVTR 502
Score = 31.6 bits (72), Expect = 1.3
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 212 ISLAKGI--ANQIQHPTASLIARASTAMDDMTGDG-TTSTVL 250
+++AK I + I++ +LI +A++ +D+ GDG TT+TVL
Sbjct: 53 VTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVL 94
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 32.3 bits (74), Expect = 0.98
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 532 PPSRE-ILLDVART----------SLRTKVERELADLLAEPNSVPSL--RNSATVNSGF- 577
PP+R+ I L VA+ +L V + L +P+L ++ ++ G
Sbjct: 330 PPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSL 389
Query: 578 --DAQDTLVKLQEACGEAPGVAVGVDVN 603
D L Q GV VG D N
Sbjct: 390 EGGETDVLAPYQALKDTPTGVVVGPDSN 417
>gnl|CDD|236067 PRK07598, PRK07598, RNA polymerase sigma factor SigC; Validated.
Length = 415
Score = 31.4 bits (71), Expect = 1.7
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 522 EVLESLKITTPPSREILLDVART-SLRTKV----ERELADLL 558
++ + L++T RE+LL V R+ SL TKV + EL DLL
Sbjct: 283 DIAQELEMTPTQVREVLLRVPRSVSLETKVGKDKDTELGDLL 324
>gnl|CDD|151632 pfam11190, DUF2976, Protein of unknown function (DUF2976). This
family of proteins has no known function. Some members
are annotated as membrane proteins however this cannot
be confirmed.
Length = 87
Score = 28.8 bits (65), Expect = 1.8
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 388 IKNTIDDGAVVPG----AGAFEVAAWHALQNYKNTVKGKSRLG 426
IKN + DG ++ G A AF A AL Y GK G
Sbjct: 19 IKNYLKDGFILLGLLLAAAAFLGVAKAALGTYNEIRDGKKTWG 61
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 31.2 bits (70), Expect = 2.1
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 499 WIISGLHPRVITEGFTQA-RLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADL 557
W +SG +++ + ++KA+ + L+I P I++D+ + S+ + +L
Sbjct: 665 WGLSGQMEKLMKINVNNSDQIKAMSGQKILEIN--PDHPIMIDLLKRSVSNPKDSQLT-- 720
Query: 558 LAEPNSVPSLRNSATVNSGFDAQDT 582
S+ + SA + SGFD +DT
Sbjct: 721 ----ESIKIIYQSAKLASGFDLEDT 741
>gnl|CDD|222645 pfam14280, DUF4365, Domain of unknown function (DUF4365). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, eukaryotes and
viruses. Proteins in this family are typically between
182 and 530 amino acids in length. There is a single
completely conserved residue D that may be functionally
important.
Length = 139
Score = 28.9 bits (65), Expect = 4.3
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 423 SRLGIQAYAEALL-----IIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEV 477
R+G A +A+L I + + G D + +++ + GEA G + V + SGE
Sbjct: 1 ERIGE-AAVQAVLAKTGWIFRELTRNDYGIDGE---IEIVDDDGEATGRLIAVQLKSGES 56
Query: 478 LNPTSAGIYDNLTVKRQIINSWIISGL 504
G + ++R+ +N W+ L
Sbjct: 57 YFYEETGGGFSFRLEREHLNYWLNHPL 83
>gnl|CDD|185583 PTZ00375, PTZ00375, dihydroxyacetone kinase-like protein;
Provisional.
Length = 584
Score = 29.8 bits (67), Expect = 5.3
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 310 NMERLSLACGGTAMNSVEGLEPAHLGY----------AGSVFEHVLGEEKFTFVEECKNP 359
+ ++ L GG + G EPAH G+ GSVF + +E N
Sbjct: 44 DKTKVLLISGGGS-----GHEPAHAGFVGKGWLTAAVCGSVFASPSTKHVLAAIEYVPNG 98
Query: 360 QSVTILLK 367
+++K
Sbjct: 99 PGCLLIVK 106
>gnl|CDD|133394 cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR
transcription regulator. Helix-turn-helix (HTH)
transcription regulator HspR, N-terminal domain. Heat
shock protein regulators (HspR) have been shown to
regulate expression of specific regulons in response to
high temperature or high osmolarity in Streptomyces and
Helicobacter, respectively. These proteins share the
N-terminal DNA binding domain with other transcription
regulators of the MerR superfamily that promote
transcription by reconfiguring the spacer between the
-35 and -10 promoter elements. A typical MerR regulator
is comprised of distinct domains that harbor the
regulatory (effector-binding) site and the active
(DNA-binding) site. Their conserved N-terminal domains
contain predicted winged HTH motifs that mediate DNA
binding, while the dissimilar C-terminal domains bind
specific coactivator molecules.
Length = 91
Score = 27.2 bits (61), Expect = 7.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 285 TGIDPQSLDLFAREGIIA-------LRRAKRRNMERL 314
+G+ PQ+L L+ R G+++ RR R++ERL
Sbjct: 11 SGMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERL 47
>gnl|CDD|215219 PLN02389, PLN02389, biotin synthase.
Length = 379
Score = 29.0 bits (65), Expect = 8.4
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 277 CSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY 336
C S RY TG+ Q L + + + A +RAK R C G A G
Sbjct: 100 CPQSSRYDTGVKAQKL-MSKDDVLEAAKRAKEAGSTRF---CMGAAWRDTVG-------- 147
Query: 337 AGSVFEHVLG 346
+ F +L
Sbjct: 148 RKTNFNQILE 157
>gnl|CDD|173170 PRK14707, PRK14707, hypothetical protein; Provisional.
Length = 2710
Score = 29.4 bits (65), Expect = 8.8
Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 5/186 (2%)
Query: 59 CATPGHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKSVKNAHILTCNISMEYEK 118
CA + + PD++ RE LN ++ PD P A L ++ +
Sbjct: 769 CAAAANTLAERQLREPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRL 828
Query: 119 SDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGAR 178
+ + VLN ++ PD A + ++ E E +VLN ++
Sbjct: 829 REAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSK 888
Query: 179 HPDMPKSVKNAHILTCNISMEYE-KSSQGGHQPEISLAKGIANQIQHPTASLIARASTAM 237
P++P A L ++ E E + + H+ +A + + P + A A++A+
Sbjct: 889 WPNVPVCAAAASALAERLADEPELRKALSAHR----VATALNALSKWPDIPVCATAASAL 944
Query: 238 DDMTGD 243
+ D
Sbjct: 945 AERLSD 950
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.384
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,528,691
Number of extensions: 3085924
Number of successful extensions: 2721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2663
Number of HSP's successfully gapped: 165
Length of query: 629
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 526
Effective length of database: 6,369,140
Effective search space: 3350167640
Effective search space used: 3350167640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)