RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14945
(629 letters)
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 354 bits (912), Expect = e-116
Identities = 167/338 (49%), Positives = 219/338 (64%), Gaps = 42/338 (12%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK+ + A + +
Sbjct: 198 LIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKT-EVNSGFFYK----SAEERE--- 249
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRT- 285
+L+K +I + K+ +
Sbjct: 250 ---------------------------KLVKAERKFIEDRVKKIIELKKKVCGDSDKGFV 282
Query: 286 -----GIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSV 340
GIDP SLD A+EGIIALRRAKRRNMERL+LACGG A+NS++ L P L V
Sbjct: 283 VINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGV 342
Query: 341 FEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
+E+ LGEEKFTF+E+C NP+SVT+L+KGPNKHTL Q KDA+RDGLRA+KN IDDG VVPG
Sbjct: 343 YEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPG 402
Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEAC 460
AGA EVA AL YK +VKG+++LG+QA+A+ALLIIPK +A NSGFD Q+TLVK+Q
Sbjct: 403 AGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH 462
Query: 461 GEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
E+ G VGVD+N+GE + AGI+DN VK+Q+++S
Sbjct: 463 SES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHS 499
Score = 86.4 bits (215), Expect = 5e-18
Identities = 36/53 (67%), Positives = 48/53 (90%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
MVE+MEMKHK+ D+ L++G+VLDHGARHPDM K V++A+ILTCN+S+EYEK+
Sbjct: 182 MVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKT 234
Score = 77.2 bits (191), Expect = 4e-15
Identities = 37/58 (63%), Positives = 45/58 (77%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAE 560
GLHPR+ITEGF A+ KAL+ LE +K++ RE L+DVARTSLRTKV ELAD+L E
Sbjct: 105 GLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTE 162
Score = 76.0 bits (188), Expect = 1e-14
Identities = 37/51 (72%), Positives = 44/51 (86%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
QIQHPTASLIA+ +TA DD+TGDGTTS VL+IGELLKQAD+YI+E +H
Sbjct: 60 QIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISE---GLH 107
Score = 70.3 bits (173), Expect = 8e-13
Identities = 26/39 (66%), Positives = 37/39 (94%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L++G+VL+HGARHPDM K V++A+ILTCN+S+EYEK++V
Sbjct: 198 LIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEV 236
Score = 66.0 bits (162), Expect = 2e-11
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 11/67 (16%)
Query: 66 QVREERAHPD------MQHQHGIREE-----GVVLNHGARHPDMPKSVKNAHILTCNISM 114
++++ D M+ +H + G+VL+HGARHPDM K V++A+ILTCN+S+
Sbjct: 170 AIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSL 229
Query: 115 EYEKSDV 121
EYEK++V
Sbjct: 230 EYEKTEV 236
Score = 64.1 bits (157), Expect = 6e-11
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
NSGFD Q+TLVK+Q E+ G VGVD+N+GE + AGI+DN VK+Q+++S
Sbjct: 445 QNSGFDLQETLVKVQAEHSES-GQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHS 499
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 341 bits (878), Expect = e-110
Identities = 148/339 (43%), Positives = 199/339 (58%), Gaps = 35/339 (10%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
+KG+VL+HG RHPDMP VKNA++L N+S+EYEK+ + S A Q
Sbjct: 209 FIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKT-EVNSGFFYSSAD----QRD--- 260
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
L A +D LK+ I ++ ++ PD + G
Sbjct: 261 -KLAASERKFVDAK---------------LKK----IIDLKNEVCGMDPDKGFVIINQKG 300
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
IDP SLD+FA+ I+ALRRAKRRNMERL L GG A NSVE L P LG++G V++ +G
Sbjct: 301 IDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIG 360
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
EEKFT+V E +P+S TIL+KG + LAQTKDAVRDGLRA+ N + D ++PGAGAF +
Sbjct: 361 EEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYI 420
Query: 407 AAWHALQNY---KNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
A L++ K KGK++ GI+A+AEALL+IPKT+ NSGFD D L +++ +A
Sbjct: 421 ALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDA 480
Query: 464 ----PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
VGVD+N G+ +PT GI+D+ V R I
Sbjct: 481 QDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITG 519
Score = 85.7 bits (213), Expect = 9e-18
Identities = 32/53 (60%), Positives = 44/53 (83%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
MVE+M+M+H +P D+ +KG+VLDHG RHPDMP VKNA++L N+S+EYEK+
Sbjct: 193 MVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKT 245
Score = 75.3 bits (186), Expect = 2e-14
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
QIQ PTA LIARA+ A D++TGDGTT+ V ++GELL+QA +I E +H
Sbjct: 67 QIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQE---GVH 114
Score = 72.6 bits (179), Expect = 1e-13
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKVERELADLLA 559
G+HPR+IT+GF AR ++++ L+ KI+ RE LL VAR+SL TKV+ +L ++L
Sbjct: 112 GVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLT 171
Query: 560 E 560
Sbjct: 172 P 172
Score = 69.9 bits (172), Expect = 9e-13
Identities = 24/39 (61%), Positives = 33/39 (84%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+KG+VL+HG RHPDMP VKNA++L N+S+EYEK++V
Sbjct: 209 FIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEV 247
Score = 65.3 bits (160), Expect = 3e-11
Identities = 23/37 (62%), Positives = 32/37 (86%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
+G+VL+HG RHPDMP VKNA++L N+S+EYEK++V
Sbjct: 211 KGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEV 247
Score = 63.4 bits (155), Expect = 1e-10
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 573 VNSGFDAQDTLVKLQEACGEA----PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
NSGFD D L +++ +A VGVD+N G+ +PT GI+D+ V R I
Sbjct: 460 KNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITG 519
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 307 bits (789), Expect = 1e-97
Identities = 87/336 (25%), Positives = 155/336 (46%), Gaps = 45/336 (13%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
+++GV++N HP M + +KN I+ + S+EY+K + EI+
Sbjct: 202 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG-ESQTDIEITRE----------- 249
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD---CSTSDRY 283
+D T +L+ + YI ++ + + PD
Sbjct: 250 -----------EDFT------------RILQMEEEYIQQLCEDIIQLKPDVVIT------ 280
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE- 342
GI + R I A+RR ++ + R++ ACG ++ E L +G + E
Sbjct: 281 EKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEI 340
Query: 343 HVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
+G+E FTF+ ECK+P++ TILL+G +K L++ + ++D ++ +N + D +VPG G
Sbjct: 341 KKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGG 400
Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE 462
A E+A HAL + G + +A A+AL +IP+T+ N G L L+ +
Sbjct: 401 ASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ 460
Query: 463 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
GV+ +G +++ GI++ L VK Q +
Sbjct: 461 ENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKT 496
Score = 71.4 bits (176), Expect = 3e-13
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
+ ++ DSC+++GV+++ HP M + +KN I+ + S+EY+K
Sbjct: 186 YARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK 237
Score = 67.5 bits (166), Expect = 5e-12
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
Q+QHP A + S D+ GDGTTS +++ GE+L A+ ++ + +MH
Sbjct: 59 QVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQ---QMH 106
Score = 64.4 bits (158), Expect = 5e-11
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
+HP V+ + +A + L+ + I S R+ +L++ +S+ TKV + L
Sbjct: 104 QMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACN 162
Score = 62.1 bits (152), Expect = 2e-10
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+++GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 202 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 240
Score = 60.2 bits (147), Expect = 1e-09
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N G L L+ + GV+ +G +++ GI++ L VK Q +
Sbjct: 441 QNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKT 496
Score = 57.9 bits (141), Expect = 6e-09
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 204 RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 240
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 302 bits (777), Expect = 1e-95
Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 39/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
LV+GVV++ HP MPK V+NA I N ++E +K+ + + I
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKT-ETDAKINI-------------- 259
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
T+ D + L+Q + + ++ + + + + G
Sbjct: 260 --------TSPDQLM------------SFLEQEEKMLKDMVDHIAQTGANVVFV---QKG 296
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
ID + A+ GI+A+RR K+ +ME+L+ A G + +V+ L P LGYA V E L
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLA 356
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
E FVE CKNP++VTIL++G +H + + + A+ D ++ +K+ ++DGAV+P GA E+
Sbjct: 357 GENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEI 416
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
L Y V GK L I+ +A+AL IIPKT+A N+G D + LVK+ G+
Sbjct: 417 ELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNR-GL 475
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
+G+DV G+ + GI + L VK+Q I S
Sbjct: 476 GIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507
Score = 71.1 bits (175), Expect = 4e-13
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
++ + + +S LV+GVV+D HP MPK V+NA I N ++E +K
Sbjct: 199 NIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKK 250
Score = 65.7 bits (161), Expect = 2e-11
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+QHP A ++ + D GDGTT+ V++ GELL++A+ + + +H
Sbjct: 73 DLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQ---NIH 120
Score = 63.4 bits (155), Expect = 1e-10
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
+HP +IT+G+ A KA E+L+ + I P E LL +A TS+ K +LLA+
Sbjct: 118 NIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAK 176
Score = 60.7 bits (148), Expect = 7e-10
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
LV+GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 215 LVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 253
Score = 56.8 bits (138), Expect = 1e-08
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D + LVK+ G+ +G+DV G+ + GI + L VK+Q I S
Sbjct: 453 ENAGLDTVEMLVKVISEHKNR-GLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 507
Score = 56.4 bits (137), Expect = 2e-08
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 217 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 253
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 255 bits (655), Expect = 1e-77
Identities = 99/332 (29%), Positives = 170/332 (51%), Gaps = 39/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
+ G+V++ H MP VKNA I + ++E +K+ + + +I
Sbjct: 212 FISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT-EIEAKVQI-------------- 256
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+ + + L Q ++ K+ K + + G
Sbjct: 257 --------SDPSKIQ------------DFLNQETNTFKQMVEKIKKSGANVVLC---QKG 293
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
ID + A+EGI A+RR K+ +ME+L+ A G + ++ L P+ LG A +V E +G
Sbjct: 294 IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIG 353
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
+++ TFV CKNP++V+IL++G H +++ + A+ D +R + T +DG + G GA E
Sbjct: 354 DDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEA 413
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
L Y N+V G+ +L I+A+A+AL IIP+T+A N+G D +TL+KL+ A E +
Sbjct: 414 ELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLK-ADDEKGRI 472
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
+VGVD+++ V + + G+ D L VK + S
Sbjct: 473 SVGVDLDNNGVGDMKAKGVVDPLRVKTHALES 504
Score = 57.6 bits (140), Expect = 8e-09
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G D+ + G+V+D H MP VKNA I + ++E +K
Sbjct: 201 KKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKK 247
Score = 54.9 bits (133), Expect = 5e-08
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTKVERELADLLAE 560
G+HP VI+ G+ A +A ++++ + L +A T+L K D LA+
Sbjct: 117 GVHPTVISNGYRLAVNEARKIIDEIAE-KSTDDATLRKIALTALSGKNTGLSNDFLAD 173
Score = 53.7 bits (130), Expect = 1e-07
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
++HPTA +I S A D GDGTT+ V++ GELLKQA+ + + +H
Sbjct: 72 DVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQ---GVH 119
Score = 51.8 bits (125), Expect = 4e-07
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+ G+V++ H MP VKNA I + ++E +K+++
Sbjct: 212 FISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 250
Score = 47.9 bits (115), Expect = 7e-06
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
G+V++ H MP VKNA I + ++E +K+++
Sbjct: 214 SGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 250
Score = 47.9 bits (115), Expect = 8e-06
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D +TL+KL+ A E ++VGVD+++ V + + G+ D L VK + S
Sbjct: 450 ENAGIDPINTLIKLK-ADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALES 504
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 254 bits (651), Expect = 1e-77
Identities = 92/332 (27%), Positives = 159/332 (47%), Gaps = 39/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L+ G+V++ HP+MP+ V+NA IL + +E+ K+ + + +I
Sbjct: 166 LIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKT-EVDSEIKI-------------- 210
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
T+ M L Q + + E+ K+ + + G
Sbjct: 211 --------TSPGQMQ------------LFLDQEEKMMREMAEKVIASGANVVFC---QKG 247
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
ID + + GI A+RR K+ +++RLS G T + ++ + +G AG V E +
Sbjct: 248 IDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVR 307
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
K T+V C+N ++VT+LL G +H + A+ D L + I+DG VV G G+ EV
Sbjct: 308 GGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEV 367
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
L Y +T+KG+ +L + +AEAL +IP +A N+G D D +V+L+ +
Sbjct: 368 ELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVELRSQHEKG-NK 426
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +GEV++ + + L +K Q IN+
Sbjct: 427 NAGLNVYTGEVVDMWENDVIEPLRIKTQAINA 458
Score = 57.2 bits (139), Expect = 9e-09
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G DS L+ G+V+D HP+MP+ V+NA IL + +E+ K
Sbjct: 155 KRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRK 201
Score = 56.8 bits (138), Expect = 1e-08
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
G+H +I+EG+ A K E+LE++ I P L+ +A T++ K + L+
Sbjct: 68 GVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSA 126
Score = 53.3 bits (129), Expect = 2e-07
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
IQHP A +I S D GDGTT+ ++ GELL +A+ I + +H
Sbjct: 23 DIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMK---GVH 70
Score = 51.8 bits (125), Expect = 5e-07
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L+ G+V++ HP+MP+ V+NA IL + +E+ K++V
Sbjct: 166 LIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV 204
Score = 47.9 bits (115), Expect = 7e-06
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
+G+V++ HP+MP+ V+NA IL + +E+ K++V
Sbjct: 168 DGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEV 204
Score = 47.9 bits (115), Expect = 7e-06
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D D +V+L+ + G++V +GEV++ + + L +K Q IN+
Sbjct: 404 ENAGLDPIDIMVELRSQHEKG-NKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINA 458
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 243 bits (623), Expect = 5e-73
Identities = 94/332 (28%), Positives = 164/332 (49%), Gaps = 38/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L+KGV+++ MPK V +A I N ++E +++ + + I
Sbjct: 208 LIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKET-ETDAEIRI-------------- 252
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
T + E ++Q + + ++ ++ + + G
Sbjct: 253 --------TDPAKLM------------EFIEQEEKMLKDMVAEIKASGANVLFC---QKG 289
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
ID + A+EGI+A RR K+ +ME+L+ A G + ++ L LG AG V E +
Sbjct: 290 IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKIS 349
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
+ FVEECK+P++VT+L++G +H + + AV D + + TI+DG +V G G+ EV
Sbjct: 350 GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEV 409
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
L+ Y + G+ +L ++A+A+AL +IP+T+A N+G DA + LVK++ A
Sbjct: 410 ELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNK 469
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +G V + G+ + L VK Q I S
Sbjct: 470 CAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501
Score = 54.1 bits (131), Expect = 8e-08
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
+HP ++ +G+ A KA E+L+++ +EIL +A TS+ K + + LAE
Sbjct: 114 NVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAE 172
Score = 53.7 bits (130), Expect = 1e-07
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G D+ L+KGV++D MPK V +A I N ++E ++
Sbjct: 197 KKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKE 243
Score = 49.9 bits (120), Expect = 2e-06
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
++HP A ++ + + GDGTT+ V+V GELL++A+ + + +H
Sbjct: 69 SVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQ---NVH 116
Score = 48.3 bits (116), Expect = 5e-06
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L+KGV+++ MPK V +A I N ++E ++++
Sbjct: 208 LIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 246
Score = 48.3 bits (116), Expect = 5e-06
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G DA + LVK++ A G++V +G V + G+ + L VK Q I S
Sbjct: 446 ENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQS 501
Score = 44.9 bits (107), Expect = 7e-05
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
+GV+++ MPK V +A I N ++E ++++
Sbjct: 210 KGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETET 246
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 243 bits (622), Expect = 9e-73
Identities = 93/332 (28%), Positives = 160/332 (48%), Gaps = 38/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
LV G+V++ HP MPK ++NA I + S+E EK + + I
Sbjct: 222 LVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKP-ELDAEIRI-------------- 266
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
M + L + + I E K+ + + G
Sbjct: 267 --------NDPTQMQ------------KFLDEEENLIKEKVDKILATGANVIIC---QKG 303
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
ID + A++G++A+RRAK+ ++E+L+ A GG +++++ + LGYA + E +G
Sbjct: 304 IDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVG 363
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
E+K FVE KNP+S++IL++G + + +T+ A+RD L + + I DG + G GA E+
Sbjct: 364 EDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEI 423
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
L+ Y V GK +L ++AYA AL + + N+GFD D L+KL+
Sbjct: 424 EIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNK 483
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+D+ +G+ ++ G+ + VK I +
Sbjct: 484 WYGIDLYAGQPVDMWQKGVIEPALVKMNAIKA 515
Score = 54.5 bits (132), Expect = 7e-08
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
+HP +I G+ +A AL+ ++ L T + ++L +A TSL +K + +A+
Sbjct: 125 DVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIAD 183
Score = 54.5 bits (132), Expect = 7e-08
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G D+ LV G+V+D HP MPK ++NA I + S+E EK
Sbjct: 211 KKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEK 257
Score = 49.5 bits (119), Expect = 2e-06
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+QHP A L+ + + D+ T DGT + V+ GEL+K+A+ + + +H
Sbjct: 80 DLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYK---DVH 127
Score = 49.1 bits (118), Expect = 3e-06
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
LV G+V++ HP MPK ++NA I + S+E EK ++
Sbjct: 222 LVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPEL 260
Score = 47.9 bits (115), Expect = 8e-06
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+GFD D L+KL+ G+D+ +G+ ++ G+ + VK I +
Sbjct: 460 ENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKA 515
Score = 45.2 bits (108), Expect = 5e-05
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
G+V++ HP MPK ++NA I + S+E EK ++
Sbjct: 224 YGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPEL 260
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 240 bits (615), Expect = 8e-72
Identities = 84/332 (25%), Positives = 160/332 (48%), Gaps = 39/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L+ G++++ HP MP VK+A I + +E +K + I
Sbjct: 213 LINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKP-EFDTNLRI-------------- 257
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+ + L Q + + E+ K+ + + + G
Sbjct: 258 --------EDPSMIQ------------KFLAQEENMLREMVDKIKSVGANVVIT---QKG 294
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
ID + +R GI A+RR K+ +M++L+ A G + +++++ + + LG A V + +G
Sbjct: 295 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVG 354
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
E+ TFV CKNP++V+IL++G +H + + + ++ D L + + ++DGA G GA
Sbjct: 355 EDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAA 414
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
L++Y + G+ +L I+ +A+A+ IP+ +A N+G D D L+KL+ A
Sbjct: 415 EIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLR-AEHAKGNK 473
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V +GE+ + G+ + + V +Q I S
Sbjct: 474 TYGINVFTGEIEDMVKNGVIEPIRVGKQAIES 505
Score = 54.5 bits (132), Expect = 7e-08
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G D+ L+ G+++D HP MP VK+A I + +E +K
Sbjct: 202 KKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKK 248
Score = 54.1 bits (131), Expect = 1e-07
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
+HP VI+EG+ A +A V++ + + +LL +A+TSL +K D LAE
Sbjct: 116 NVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAE 174
Score = 49.5 bits (119), Expect = 2e-06
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
++HP A ++ S D GDGTT+ V++ G LL+QA I + +H
Sbjct: 71 DVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQ---NVH 118
Score = 48.7 bits (117), Expect = 4e-06
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L+ G++++ HP MP VK+A I + +E +K +
Sbjct: 213 LINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 251
Score = 44.8 bits (107), Expect = 7e-05
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
G++++ HP MP VK+A I + +E +K +
Sbjct: 215 NGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 251
Score = 44.8 bits (107), Expect = 7e-05
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D D L+KL+ A G++V +GE+ + G+ + + V +Q I S
Sbjct: 451 ENAGLDPIDILLKLR-AEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIES 505
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 238 bits (610), Expect = 2e-71
Identities = 80/334 (23%), Positives = 148/334 (44%), Gaps = 40/334 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L+KGV+++ HP MPK V++A I E K + H+ ++
Sbjct: 202 LIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKP-KTKHKLDV-------------- 246
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
T+++D L K E+ ++ + + + + G
Sbjct: 247 --------TSVEDFK------------ALQKYEKEKFEEMIRQIKETGANLAVC---QWG 283
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
D ++ L + + A+R +E +++A GG + L LG+AG V E G
Sbjct: 284 FDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFG 343
Query: 347 --EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAF 404
++K +E+CKN ++VTI ++G NK + + K ++ D L I+N I D VV G GA
Sbjct: 344 TTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA 403
Query: 405 EVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAP 464
E++ A+ + + ++A+A+AL +IP +A NSG + T+ +++ +
Sbjct: 404 EISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEV 463
Query: 465 GVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
A+G+D + + + L K+Q I+
Sbjct: 464 NPALGIDCLHKGTNDMKHQHVIETLIGKKQQISL 497
Score = 54.1 bits (131), Expect = 8e-08
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
G D+ L+KGV++D HP MPK V++A I E K
Sbjct: 191 GKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPK 237
Score = 53.7 bits (130), Expect = 1e-07
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKVERELADLLA 559
G+HP I +G+ QA A+E L+ + + E L+ A+T+L +KV +A
Sbjct: 105 GIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMA 164
Query: 560 E 560
E
Sbjct: 165 E 165
Score = 49.5 bits (119), Expect = 2e-06
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+ H A L+ S + DD GDGTT V++ G LL++A+ + +H
Sbjct: 60 DVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDR---GIH 107
Score = 49.1 bits (118), Expect = 3e-06
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
NSG + T+ +++ + A+G+D + + + L K+Q I+
Sbjct: 442 ENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISL 497
Score = 48.7 bits (117), Expect = 4e-06
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L+KGV+++ HP MPK V++A I E K
Sbjct: 202 LIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 240
Score = 44.8 bits (107), Expect = 6e-05
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
+GV+++ HP MPK V++A I E K
Sbjct: 204 KGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 240
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 239 bits (611), Expect = 6e-71
Identities = 73/392 (18%), Positives = 144/392 (36%), Gaps = 102/392 (26%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
++KGV+LN HP M + ++N ++ + +EY K + EI
Sbjct: 219 VLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEY-KKGESQTNIEI-------------- 263
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPD---CSTSDRY 283
+D +L+ + + + ++ P
Sbjct: 264 --------EKEEDWN------------RILQIEEEQVQLMCEQILAVRPTLVIT------ 297
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY-AGSVFE 342
G+ + + G LRR K+ + R++ G T +N VE L+ + +G G
Sbjct: 298 EKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKV 357
Query: 343 HVLGEEKFTFVEECKNPQSVT--------------------ILLKGPNKHTLAQTKDA-- 380
++G+E F+F++ CK P S + I + N+ + A
Sbjct: 358 EMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALG 417
Query: 381 ----------------------------------VRDGLRAIKNTIDDGAVVPGAGAFEV 406
++D + +N + ++ PG GA E+
Sbjct: 418 SGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEM 477
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
A L ++G + QA A+A+ IP+T+ N+G D L +L+ +
Sbjct: 478 AVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQG-NF 536
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+D + G++++ S GI++ +K+Q + +
Sbjct: 537 TTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKT 568
Score = 74.4 bits (183), Expect = 5e-14
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
V + ++ DS ++KGV+L+ HP M + ++N ++ + +EY+K
Sbjct: 203 YVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKK 254
Score = 64.7 bits (158), Expect = 5e-11
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
+HP +I + +A ALEV++ + + + + S+ TK ++ + E
Sbjct: 115 NIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCE 173
Score = 64.0 bits (156), Expect = 9e-11
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQA 259
+ HP A + S D+ GDGTT+ +++ GE+L Q
Sbjct: 69 DVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQC 107
Score = 63.6 bits (155), Expect = 1e-10
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
++KGV+LN HP M + ++N ++ + +EY+K +
Sbjct: 219 VLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGES 257
Score = 58.9 bits (143), Expect = 3e-09
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
+GV+LN HP M + ++N ++ + +EY+K +
Sbjct: 221 KGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGES 257
Score = 54.7 bits (132), Expect = 6e-08
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 574 NSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G D L +L+ + G+D + G++++ S GI++ +K+Q + +
Sbjct: 515 NAGGDPIRLLSQLRAKHAQG-NFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKT 568
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 237 bits (607), Expect = 8e-71
Identities = 77/332 (23%), Positives = 142/332 (42%), Gaps = 39/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L +G +L + PK ++NA IL N +++ +K G + ++
Sbjct: 208 LDEGFILAKKFGNN-QPKRIENAKILIANTTLDTDKVKIFGTKFKV-------------- 252
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+ + +L K + K+ KF + + R
Sbjct: 253 --------DSTAKLA------------QLEKAEREKMKNKIAKISKFGINTFIN---RQL 289
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
I LF GI ++ A +ERL+L GG +++ + LG + E +LG
Sbjct: 290 IYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLG 349
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
E+ F CK ++ TI+L+G TL + + ++ D L + T + V G G E+
Sbjct: 350 EQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEM 409
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
A+ + GK L ++A+A AL +P +A N+GFD+ + + KL+ +
Sbjct: 410 VMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLR-SSIYNGIS 468
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+D+N+G + + GI ++ +KR +++S
Sbjct: 469 TSGLDLNNGTIADMRQLGIVESYKLKRAVVSS 500
Score = 51.0 bits (123), Expect = 8e-07
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 504 LHPRVITEGFTQARLKALEVLESLKITTPPS----REILLDVARTSLRTKVERELADLLA 559
+HP+ I EG+ A AL+ L + RE L+ +A+T+L +K+ + D A
Sbjct: 115 IHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFA 174
Query: 560 E 560
E
Sbjct: 175 E 175
Score = 49.8 bits (120), Expect = 2e-06
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAE 265
+ +P A ++ S DD GDGTTS ++ ELL++A+ I +
Sbjct: 68 PLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQ 112
Score = 49.0 bits (118), Expect = 3e-06
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G DS L +G +L + PK ++NA IL N +++ +K
Sbjct: 197 KILGGKLSDSFLDEGFILAKKFGNN-QPKRIENAKILIANTTLDTDK 242
Score = 44.4 bits (106), Expect = 9e-05
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+GFD+ + + KL+ + G+D+N+G + + GI ++ +KR +++S
Sbjct: 446 DNAGFDSSELVSKLR-SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSS 500
Score = 44.0 bits (105), Expect = 1e-04
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L +G +L + PK ++NA IL N +++ +K +
Sbjct: 208 LDEGFILAKKFGNN-QPKRIENAKILIANTTLDTDKVKI 245
Score = 40.2 bits (95), Expect = 0.002
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
EG +L + PK ++NA IL N +++ +K +
Sbjct: 210 EGFILAKKFGNN-QPKRIENAKILIANTTLDTDKVKI 245
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 236 bits (605), Expect = 1e-70
Identities = 77/332 (23%), Positives = 143/332 (43%), Gaps = 39/332 (11%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L +G +L+ + PK ++NA IL N M+ +K G + +
Sbjct: 201 LDEGFLLDKKI-GVNQPKRIENAKILIANTGMDTDKIKIFGSRVRV-------------- 245
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+ + E+ + E ++ K +C + R
Sbjct: 246 --------DSTAKVA------------EIEHAEKEKMKEKVERILKHGINCFIN---RQL 282
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLG 346
I LF G++A+ A +ERL+L GG ++ + E LG + E ++G
Sbjct: 283 IYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIG 342
Query: 347 EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEV 406
E+K ++ TI+L+G + L + + ++ D L + T+ D V G G E+
Sbjct: 343 EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEM 402
Query: 407 AAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGV 466
HA+ + GK + +++YA+AL ++P IA N+G+D+ D + +L+ A
Sbjct: 403 LMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLR-AAHSEGKT 461
Query: 467 AVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+D+ G + + + GI ++ VKRQ++ S
Sbjct: 462 TAGLDMKEGTIGDMSVLGITESFQVKRQVLLS 493
Score = 52.9 bits (128), Expect = 2e-07
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS----REILLDVARTSLRTKVERELADLL 558
+HP+ I G+ +A A + L + + R+ L+++A T+L +K+ D
Sbjct: 107 KIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHF 166
Query: 559 AE 560
+
Sbjct: 167 TK 168
Score = 49.4 bits (119), Expect = 2e-06
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+ +P A ++ S DD GDGTTS ++ ELL++A+ IA+ K+H
Sbjct: 62 GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAK---KIH 109
Score = 48.3 bits (116), Expect = 6e-06
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G DS L +G +LD + PK ++NA IL N M+ +K
Sbjct: 190 KKLGGSLADSYLDEGFLLDKKI-GVNQPKRIENAKILIANTGMDTDK 235
Score = 44.4 bits (106), Expect = 9e-05
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G+D+ D + +L+ A G+D+ G + + + GI ++ VKRQ++ S
Sbjct: 439 DNAGYDSADLVAQLR-AAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLS 493
Score = 43.3 bits (103), Expect = 2e-04
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L +G +L+ + PK ++NA IL N M+ +K +
Sbjct: 201 LDEGFLLDKKI-GVNQPKRIENAKILIANTGMDTDKIKI 238
Score = 39.4 bits (93), Expect = 0.003
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
EG +L+ + PK ++NA IL N M+ +K +
Sbjct: 203 EGFLLDKKI-GVNQPKRIENAKILIANTGMDTDKIKI 238
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 234 bits (599), Expect = 1e-69
Identities = 80/345 (23%), Positives = 149/345 (43%), Gaps = 51/345 (14%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
L+ G LN MPK + NA I + S++ K + G Q I
Sbjct: 204 LINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKM-KLGVQVVI-------------- 248
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
T + + ++ ++ E K+ + + G
Sbjct: 249 --------TDPEKLD------------QIRQRESDITKERIQKILATGANVILT---TGG 285
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAH------LGYAGSV 340
ID L F G +A+RR +R+++R++ A G T ++++ LE LG A V
Sbjct: 286 IDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEV 345
Query: 341 FEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
+ + +++ ++ K S +++L+G N + + ++ D L +K ++ +VVPG
Sbjct: 346 VQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPG 405
Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL---- 456
GA E A L+NY ++ + +L I +A +LL+IP T+AVN+ D+ D + KL
Sbjct: 406 GGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFH 465
Query: 457 ---QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
Q +G+D+ +G+ + AG+++ VK + +
Sbjct: 466 NEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKF 510
Score = 55.6 bits (135), Expect = 3e-08
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G +S L+ G L+ MPK + NA I + S++ K
Sbjct: 193 KAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTK 239
Score = 50.2 bits (121), Expect = 1e-06
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 503 GLHPRVITEGFTQARLKALEVL-ESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
+HP + G+ A +A+ + E+L I T R+ L++ A+TS+ +KV D A
Sbjct: 105 KIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFAN 164
Score = 49.9 bits (120), Expect = 2e-06
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+++HP A ++ + D GDGTTS V++ ELLK AD + + K+H
Sbjct: 60 EVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQ---KIH 107
Score = 49.9 bits (120), Expect = 2e-06
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
L+ G LN MPK + NA I + S++ K +
Sbjct: 204 LINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 242
Score = 46.4 bits (111), Expect = 2e-05
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
G LN MPK + NA I + S++ K +
Sbjct: 206 NGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 242
Score = 46.4 bits (111), Expect = 2e-05
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 573 VNSGFDAQDTLVKL-------QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQI 625
VN+ D+ D + KL Q +G+D+ +G+ + AG+++ VK +
Sbjct: 448 VNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKS 507
Query: 626 INS 628
+
Sbjct: 508 LKF 510
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 233 bits (596), Expect = 5e-69
Identities = 69/335 (20%), Positives = 136/335 (40%), Gaps = 42/335 (12%)
Query: 167 LVKGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQ 223
+ GV + PK N IL+ N+ +E + + + +
Sbjct: 214 FINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAE-KDNAEVRV----------- 261
Query: 224 HPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY 283
++D ++ I E ++ + + S
Sbjct: 262 -----------EHVEDYQ------------AIVDAEWQLIFEKLRQVEETGANIVLS--- 295
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ I + FA I R +M R+ A GG+ ++ ++P HLG E
Sbjct: 296 KLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEM 355
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+G E++ + C ++ T+LL+G + +A+ + ++ D + +K + + +V G GA
Sbjct: 356 QIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGA 415
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E+ L++Y T+ GK ++ I A+A+AL +IP+ + N+GFDA + L KL+
Sbjct: 416 TEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLR-LAHSK 474
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
GV + + + + +++ VK +NS
Sbjct: 475 GEKWYGVVFETENIGDNFAKFVWEPALVKINALNS 509
Score = 52.9 bits (128), Expect = 2e-07
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS----REILLDVARTSLRTKVERELADLL 558
G+ +I +G+ +A A+E + L + RE+L ART++ +K+ AD
Sbjct: 119 GISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFF 178
Query: 559 AE 560
+
Sbjct: 179 VK 180
Score = 49.8 bits (120), Expect = 2e-06
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+ HP A + S A D GDGTTS ++ GEL+K+A ++ E +
Sbjct: 74 DVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEE---GIS 121
Score = 48.7 bits (117), Expect = 5e-06
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 10 KTPG----DSCLVKGVVLDHGARHP---DMPKSVKNAHILTCNISMEYEK 52
K PG +S + GV + PK N IL+ N+ +E +
Sbjct: 203 KIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKA 252
Score = 44.8 bits (107), Expect = 7e-05
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+GFDA + L KL+ GV + + + + +++ VK +NS
Sbjct: 455 ENAGFDAIEILNKLR-LAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINALNS 509
Score = 42.5 bits (101), Expect = 3e-04
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 125 LVKGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSDV 163
+ GV + PK N IL+ N+ +E +
Sbjct: 214 FINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKD 255
Score = 39.1 bits (92), Expect = 0.005
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 85 EGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSDV 121
GV + PK N IL+ N+ +E +
Sbjct: 216 NGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKD 255
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 232 bits (593), Expect = 5e-69
Identities = 77/335 (22%), Positives = 140/335 (41%), Gaps = 42/335 (12%)
Query: 167 LVKGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQ 223
LV GV + PK N I N+ +E + + + +
Sbjct: 201 LVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE-KDNAEIRV----------- 248
Query: 224 HPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY 283
++D ++ + + K+H S
Sbjct: 249 -----------HTVEDYQ------------AIVDAEWNILYDKLEKIHHSGAKVVLS--- 282
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
+ I + FA + R +++R +ACGG+ SV L LG E
Sbjct: 283 KLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEET 342
Query: 344 VLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+G E++ F C ++ TI+L+G + + +T+ ++ D + ++ I + +VV G GA
Sbjct: 343 QIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGA 402
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E+ L++Y T+ GK +L I AYA+AL IIP+ + N+GFDA + L KL+ A
Sbjct: 403 IEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLR-ARHAQ 461
Query: 464 PGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G+ GVD+N+ ++ + A +++ V+ + +
Sbjct: 462 GGMWYGVDINTEDIADNFEAFVWEPAMVRINALTA 496
Score = 52.9 bits (128), Expect = 2e-07
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-----REILLDVARTSLRTKVERELADL 557
GLHP++I F A A+ ++ + +T R++L A T+L +K+ +
Sbjct: 106 GLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAF 165
Query: 558 LAE 560
A+
Sbjct: 166 FAK 168
Score = 49.8 bits (120), Expect = 2e-06
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+ HP A + + + D GDGTTS L+ E LKQ Y+ E +H
Sbjct: 61 DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEE---GLH 108
Score = 47.9 bits (115), Expect = 8e-06
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 10 KTPG----DSCLVKGVVLDHGARHP---DMPKSVKNAHILTCNISMEYEK 52
K G +S LV GV + PK N I N+ +E +
Sbjct: 190 KVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKA 239
Score = 44.8 bits (107), Expect = 7e-05
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+GFDA + L KL+ A G+ GVD+N+ ++ + A +++ V+ + +
Sbjct: 442 DNAGFDATNILNKLR-ARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTA 496
Score = 41.7 bits (99), Expect = 6e-04
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 125 LVKGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSDV 163
LV GV + PK N I N+ +E +
Sbjct: 201 LVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKD 242
Score = 37.9 bits (89), Expect = 0.008
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 85 EGVVLNHGARHP---DMPKSVKNAHILTCNISMEYEKSDV 121
GV + PK N I N+ +E +
Sbjct: 203 AGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKD 242
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 228 bits (583), Expect = 4e-67
Identities = 72/340 (21%), Positives = 133/340 (39%), Gaps = 46/340 (13%)
Query: 167 LVKGVVLNHGARHPDMPKSV------KNAHILTCNISMEYEKSSQGGHQPEISLAKGIAN 220
L+ GV+L+ HP MPK V + E K + H+ +I
Sbjct: 239 LINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKP-KTKHKLDI-------- 289
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTS 280
+++++ +L E+ + K D
Sbjct: 290 --------------SSVEEYQ------------KLQTYEQDKFKEMIDDVKKAGADVVIC 323
Query: 281 DRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSV 340
+ G D ++ L + + A+R + +E ++++ G + + L LG +
Sbjct: 324 ---QWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRI 380
Query: 341 FEHVLG--EEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVV 398
+E G +++ +E+ K ++VT ++G NK + + + A+ D L ++N + D VV
Sbjct: 381 YEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVV 440
Query: 399 PGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQE 458
G GA EV A+ + +G + + +A+AL IP T+A NSG D TL L+
Sbjct: 441 YGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKS 500
Query: 459 ACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
+ +GVD + + D K+Q I
Sbjct: 501 KQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILL 540
Score = 52.2 bits (126), Expect = 4e-07
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-----REILLDVARTSLRTKVERELADL 557
G+HP I GF +A A+ LE S R+ LL A+TSL +K+ + D
Sbjct: 140 GIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDR 199
Query: 558 LAE 560
AE
Sbjct: 200 FAE 202
Score = 49.5 bits (119), Expect = 2e-06
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
++ + A L+ + S + DD GDGTT V++ LL QA I + +H
Sbjct: 95 ELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQK---GIH 142
Score = 46.8 bits (112), Expect = 2e-05
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
NSG D TL L+ + +GVD + + D K+Q I
Sbjct: 485 ENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILL 540
Score = 46.0 bits (110), Expect = 3e-05
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 10/53 (18%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSV------KNAHILTCNISMEYEK 52
G DS L+ GV+LD HP MPK V + E K
Sbjct: 228 GRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPK 280
Score = 40.6 bits (96), Expect = 0.001
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 125 LVKGVVLNHGARHPDMPKSV------KNAHILTCNISMEYEKSDV 163
L+ GV+L+ HP MPK V + E K
Sbjct: 239 LINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKT 283
Score = 36.8 bits (86), Expect = 0.022
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 85 EGVVLNHGARHPDMPKSV------KNAHILTCNISMEYEKSDV 121
GV+L+ HP MPK V + E K
Sbjct: 241 NGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKT 283
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 225 bits (577), Expect = 1e-66
Identities = 66/336 (19%), Positives = 131/336 (38%), Gaps = 41/336 (12%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
LV+G+VL + + + V+ A I + K+ +Q +
Sbjct: 202 LVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKT-DMDNQIVV-------------- 245
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDC--STSDRYR 284
+ M +L++ YI + ++ K + R
Sbjct: 246 --------SDYVQMD------------RVLREERAYILNLVKQIKKTGCNVLLIQKSILR 285
Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE-H 343
+ +L + I+ ++ +R ++E + G + V+ LG A E
Sbjct: 286 DALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVS 345
Query: 344 VLGEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAG 402
+ G K + C +P ++VTI+++G NK + + + ++ D L I+ + A++ G G
Sbjct: 346 LNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGG 405
Query: 403 AFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGE 462
A E+ L Y T+ G I+A+A+A+ +IP T+A N+G + T+ +L+
Sbjct: 406 APEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELR-NRHA 464
Query: 463 APGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
G++V G + N + L V +
Sbjct: 465 QGEKTTGINVRKGGISNILEELVVQPLLVSVSALTL 500
Score = 54.5 bits (132), Expect = 6e-08
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
G+HP +I+E F +A K +E+L + S RE LL+ A TSL +KV + + LL+
Sbjct: 106 GIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSP 164
Score = 49.4 bits (119), Expect = 2e-06
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
Q+ HP A ++ S A D GDGTTS V++ G LL + + +H
Sbjct: 61 QVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQK---GIH 108
Score = 46.8 bits (112), Expect = 2e-05
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G D LV+G+VL + + + V+ A I + K
Sbjct: 191 KKLGGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPK 236
Score = 44.8 bits (107), Expect = 7e-05
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G + T+ +L+ G++V G + N + L V +
Sbjct: 446 ENAGLNPISTVTELR-NRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTL 500
Score = 41.7 bits (99), Expect = 6e-04
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
LV+G+VL + + + V+ A I + K+D+
Sbjct: 202 LVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDM 239
Score = 37.9 bits (89), Expect = 0.010
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
EG+VL + + + V+ A I + K+D+
Sbjct: 204 EGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDM 239
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 225 bits (576), Expect = 2e-66
Identities = 62/338 (18%), Positives = 121/338 (35%), Gaps = 42/338 (12%)
Query: 167 LVKGVVLNHGARH-PDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHP 225
++ GVVL A P + A I + K + +
Sbjct: 209 MIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKP-DTENNIIV------------- 254
Query: 226 TASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDC--STSDRY 283
M ++LK+ Y+ + K+ K +
Sbjct: 255 ---------NDYRQMD------------KILKEERAYLLNICKKIKKAKCNVLLIQKSIL 293
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
R ++ +L ++ I+ ++ +R +E LS G + +E L A V E
Sbjct: 294 RDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEI 353
Query: 344 VLGEEKFTFVEECKNP---QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPG 400
K V +N +V+++++G N + +T+ ++ D L I+ + + ++ G
Sbjct: 354 DSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAG 413
Query: 401 AGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEAC 460
GA E+ L +++G Q +A AL +IP T+A N+G ++ + +L+ +
Sbjct: 414 GGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELR-SK 472
Query: 461 GEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
E + G+ V N I + V I
Sbjct: 473 HENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITL 510
Score = 54.1 bits (131), Expect = 8e-08
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
G+HP +I + F A +++++L + S RE L+ A TSL +K+ + + LA
Sbjct: 114 GIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAP 172
Score = 49.5 bits (119), Expect = 2e-06
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
I HP A ++ S A D GDGTTS V++ G LL A+ + + +H
Sbjct: 69 AILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNK---GIH 116
Score = 49.5 bits (119), Expect = 3e-06
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 10 KTPG----DSCLVKGVVLDHGARH-PDMPKSVKNAHILTCNISMEYEK 52
K G D+ ++ GVVL A P + A I + K
Sbjct: 198 KKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPK 245
Score = 44.8 bits (107), Expect = 7e-05
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 628
N+G ++ + +L+ + E + G+ V N I + V I
Sbjct: 456 ENAGLNSIKVVTELR-SKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITL 510
Score = 44.1 bits (105), Expect = 1e-04
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 125 LVKGVVLNHGARH-PDMPKSVKNAHILTCNISMEYEKSDV 163
++ GVVL A P + A I + K D
Sbjct: 209 MIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDT 248
Score = 40.2 bits (95), Expect = 0.002
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 85 EGVVLNHGARH-PDMPKSVKNAHILTCNISMEYEKSDV 121
+GVVL A P + A I + K D
Sbjct: 211 DGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDT 248
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 220 bits (564), Expect = 2e-64
Identities = 82/351 (23%), Positives = 146/351 (41%), Gaps = 57/351 (16%)
Query: 167 LVKGVVLNHGARHPDMPKSVK--NAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQH 224
LV G LN MPK + N I +++++ + G Q I
Sbjct: 218 LVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARM-AMGVQINI------------ 264
Query: 225 PTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYR 284
+ + ++ K+ + E K+ +
Sbjct: 265 ----------DDPEQLE------------QIRKREAGIVLERVKKIIDAGAQVVLT---T 299
Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEP------AHLGYAG 338
GID L F I+ +RR K+ ++ R++ A G T ++S+ LE ++LG
Sbjct: 300 KGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCD 359
Query: 339 SVFEHVLGEEKFTFVEECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVV 398
V + +++ ++ S +I+L+G N ++L + + ++ D L +K T++ G VV
Sbjct: 360 EVVQAKFSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVV 419
Query: 399 PGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL-- 456
PG G E A L N+ TV + +L I +A ALLIIPKT+AVN+ D+ + + KL
Sbjct: 420 PGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRS 479
Query: 457 ---------QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
E G+D+ G++++ AG+ + K + + S
Sbjct: 480 YHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKS 530
Score = 50.3 bits (121), Expect = 1e-06
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 503 GLHPRVITEGFTQARLKALEVL-ESLKITTPPS-REILLDVARTSLRTKVERELADLLAE 560
+HP I GF A +A+ + E L + +E L+++A+TS+ +K+ +D +
Sbjct: 119 KIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSN 178
Score = 49.5 bits (119), Expect = 2e-06
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMH 271
+QHP ++ + D GDGTTS V++ ELLK+A+ + K+H
Sbjct: 74 DVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKN---KIH 121
Score = 45.7 bits (109), Expect = 4e-05
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVK--NAHILTCNISMEYEK 52
K G +S LV G L+ MPK + N I +++++ +
Sbjct: 207 KAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKAR 255
Score = 42.6 bits (101), Expect = 3e-04
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 573 VNSGFDAQDTLVKL-----------QEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTV 621
VN+ D+ + + KL E G+D+ G++++ AG+ +
Sbjct: 464 VNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTIS 523
Query: 622 KRQIINS 628
K + + S
Sbjct: 524 KVKSLKS 530
Score = 39.9 bits (94), Expect = 0.003
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 125 LVKGVVLNHGARHPDMPKSVK--NAHILTCNISMEYEKSDV 163
LV G LN MPK + N I +++++ + +
Sbjct: 218 LVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAM 258
Score = 36.0 bits (84), Expect = 0.037
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 85 EGVVLNHGARHPDMPKSVK--NAHILTCNISMEYEKSDV 121
G LN MPK + N I +++++ + +
Sbjct: 220 PGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAM 258
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 211 bits (540), Expect = 2e-61
Identities = 66/337 (19%), Positives = 121/337 (35%), Gaps = 48/337 (14%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHI--LTCNISMEYEKSSQGGHQPEISLAKGIANQIQH 224
++ G+V SVK+A I +C ++ I A
Sbjct: 201 VLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITET---KGTVLIKSA--------- 246
Query: 225 PTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYR 284
+++ K + + + + +
Sbjct: 247 -------------EELM------------NFSKGEENLMDAQVKAIADTGANVVVT---G 278
Query: 285 TGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHV 344
+ +L + I+ +R + ++ RL G TA+ + +G+ SV+
Sbjct: 279 GRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSE 338
Query: 345 LGEEKFTFVEECKNP-QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGA 403
+G+ + + K TI+L+G + + + AV DG+ K D +VPG GA
Sbjct: 339 VGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGA 398
Query: 404 FEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEA 463
E+ + +Y T G + I+ +AEA IP+ +A NSG A + + KL A +
Sbjct: 399 TEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLY-AVHQE 457
Query: 464 PGVAVGVDVNSG--EVLNPTSAGIYDNLTVKRQIINS 498
VG+D+ + V + AG+ D K I
Sbjct: 458 GNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKL 494
Score = 55.2 bits (134), Expect = 4e-08
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKV---ERELAD 556
GL + EG+ A KA E+L L + + + + + TS+ +K E LA
Sbjct: 106 GLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYGNEVFLAK 165
Query: 557 LLAE 560
L+A+
Sbjct: 166 LIAQ 169
Score = 51.0 bits (123), Expect = 7e-07
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI 263
++QHP A +I AS + GDGT ++ G LL+ A+ +
Sbjct: 61 EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELL 103
Score = 42.1 bits (100), Expect = 4e-04
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 10 KTPG----DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
K G S ++ G+V SVK+A I + +
Sbjct: 190 KILGSGVHSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMI 234
Score = 41.0 bits (97), Expect = 0.001
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 573 VNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSG--EVLNPTSAGIYDNLTVKRQIINS 628
NSG A + + KL A + VG+D+ + V + AG+ D K I
Sbjct: 438 ENSGVKANEVISKLY-AVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKL 494
Score = 37.1 bits (87), Expect = 0.017
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHI--LTCNISMEYEKSDVCIIL 167
++ G+V SVK+A I +C ++ +++
Sbjct: 201 VLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGTVLI 243
Score = 32.5 bits (75), Expect = 0.45
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHI--LTCNISMEYEKSDVCIIL 125
G+V SVK+A I +C ++ +++
Sbjct: 203 HGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGTVLI 243
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 212 bits (541), Expect = 4e-61
Identities = 72/349 (20%), Positives = 134/349 (38%), Gaps = 57/349 (16%)
Query: 167 LVKGVVLNHG-ARHPDMPKSVKNAHI--LTCNISMEYEKSSQGGHQPEISLAKGIANQIQ 223
++KG+V N H K + TC + + ++ + A
Sbjct: 222 VIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTET---KGTVLLHNA-------- 270
Query: 224 HPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRY 283
+M + K + I + ++ +C +
Sbjct: 271 --------------QEML------------DFSKGEEKQIDAMMKEIADMGVECIVA--- 301
Query: 284 RTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEH 343
G+ +L R GI+ L+ + + RL CG T + + P LG +V
Sbjct: 302 GAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTM 361
Query: 344 VLGEEKFTFV--EECKNPQSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDD--GAVVP 399
+G ++ T E+ + ++ TI+L+G ++ L + A+ DG+ A+K + G ++P
Sbjct: 362 EIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLP 421
Query: 400 GAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKL--- 456
GAGA E+ + Y G +L I+ +A A ++P+T+A +G D + L L
Sbjct: 422 GAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAA 481
Query: 457 ----QEACGEAPGVAVGVDVN---SGEVLNPTSAGIYDNLTVKRQIINS 498
+ + + GVD++ V + IYD L K+ IN
Sbjct: 482 HNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINV 530
Score = 53.7 bits (130), Expect = 1e-07
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 503 GLHPRVITEGFTQARLKALEVLESLKITTPPS---REILLDVARTSLRTKV---ERELAD 556
GL I +G+ AR L+ L+ + + + LL + + + +K E L++
Sbjct: 121 GLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSE 180
Query: 557 LLAE 560
L++E
Sbjct: 181 LVSE 184
Score = 51.0 bits (123), Expect = 7e-07
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 221 QIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYI 263
I HP ++ A+ GDGT +++ GELL ++ I
Sbjct: 76 DIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLI 118
Score = 46.0 bits (110), Expect = 3e-05
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 10 KTPG----DSCLVKGVVLDHG-ARHPDMPKSVKNAHILTCNISMEYEK 52
K G +S ++KG+V + H K + ++
Sbjct: 211 KIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIAN 258
Score = 42.6 bits (101), Expect = 4e-04
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 574 NSGFDAQDTLVKL-------QEACGEAPGVAVGVDVN---SGEVLNPTSAGIYDNLTVKR 623
+G D + L L + + + GVD++ V + IYD L K+
Sbjct: 466 TAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKK 525
Query: 624 QIINS 628
IN
Sbjct: 526 FAINV 530
Score = 41.4 bits (98), Expect = 9e-04
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 125 LVKGVVLNHG-ARHPDMPKSVKNAHI--LTCNISMEYEKSDVCIIL 167
++KG+V N H K + TC + + ++ ++L
Sbjct: 222 VIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLL 267
Score = 36.8 bits (86), Expect = 0.024
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 85 EGVVLNHG-ARHPDMPKSVKNAHI--LTCNISMEYEKSDVCIIL 125
+G+V N H K + TC + + ++ ++L
Sbjct: 224 KGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLL 267
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 179 bits (456), Expect = 3e-53
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 39/211 (18%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
+++GV++N HP M + +KN I+ + S+EY+K + EI+
Sbjct: 6 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG-ESQTDIEIT----REEDFT--- 57
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+L+ + YI ++ + + PD +++ G
Sbjct: 58 ---------------------------RILQMEEEYIHQLCEDIIQLKPDVVITEK---G 87
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGY-AGSVFEHVL 345
I + R + A+RR ++ + R++ ACG ++ E L +G AG + +
Sbjct: 88 ISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKI 147
Query: 346 GEEKFTFVEECKNPQSVTILLKGPNKHTLAQ 376
G+E FTF+ +CK+P++ TILL+G + H
Sbjct: 148 GDEYFTFITDCKDPKACTILLRGASHHHHHH 178
Score = 71.5 bits (176), Expect = 1e-14
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
DSC+++GV+++ HP M + +KN I+ + S+EY+K
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG 42
Score = 66.1 bits (162), Expect = 8e-13
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+++GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 6 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 44
Score = 61.4 bits (150), Expect = 3e-11
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 8 RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 44
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 154 bits (392), Expect = 2e-44
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 38/193 (19%)
Query: 168 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTA 227
+ G+V++ H MP VKNA I + ++E +K+ + + +IS ++IQ
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT-EIEAKVQIS----DPSKIQ---- 51
Query: 228 SLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGI 287
+ L Q ++ K+ K + + GI
Sbjct: 52 --------------------------DFLNQETNTFKQMVEKIKKSGANVVLCQK---GI 82
Query: 288 DPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE 347
D + A+EGI A+RR K+ +ME+L+ A G + ++ L P+ LG A +V E +G+
Sbjct: 83 DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD 142
Query: 348 EKFTFVEECKNPQ 360
++ TFV CKN
Sbjct: 143 DRMTFVMGCKNHH 155
Score = 64.1 bits (157), Expect = 3e-12
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 126 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+ G+V++ H MP VKNA I + ++E +K+++
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 38
Score = 63.8 bits (156), Expect = 4e-12
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 18 VKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
+ G+V+D H MP VKNA I + ++E +K+
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKT 36
Score = 61.4 bits (150), Expect = 2e-11
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
G+V++ H MP VKNA I + ++E +K+++
Sbjct: 2 SGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 7e-08
Identities = 51/282 (18%), Positives = 82/282 (29%), Gaps = 96/282 (34%)
Query: 217 GIANQIQHPTASLIARASTAMDDMT-GDGTTSTVL-VIGELLKQADIYIAEVNLKMHKFA 274
G+ +P SL S D + +G S +L + +Q Y+ + N
Sbjct: 307 GVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN----SHL 360
Query: 275 PDCST-------SDRYR--TGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNS 325
P + +G PQSL LR+AK A G +
Sbjct: 361 PAGKQVEISLVNGAKNLVVSG-PPQSLYGLNL----TLRKAK---------APSGLDQSR 406
Query: 326 VEGLE--------------PAH---LGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKG 368
+ E P H L A + L + +F N + ++
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF-----NAKD----IQI 457
Query: 369 PNKHTLAQTKDAVRDG--LRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNT-------- 418
P T DG LR + +I + +V W +K T
Sbjct: 458 PVYDT--------FDGSDLRVLSGSISE-RIVD-CIIRLPVKWETTTQFKATHILDFGPG 507
Query: 419 -VKGKSRL--------GIQAYAEALLIIPKTIAVNS----GF 447
G L G++ +I+ T+ +N GF
Sbjct: 508 GASGLGVLTHRNKDGTGVR------VIVAGTLDINPDDDYGF 543
Score = 53.9 bits (129), Expect = 1e-07
Identities = 53/315 (16%), Positives = 97/315 (30%), Gaps = 133/315 (42%)
Query: 323 MNSVEGLEPAHLGYAGS-----VFE----HVLGEEKFTFVEECK-NPQSVTILLKGPNKH 372
M G++ L Y S V+ H F+ ++ NP ++TI G
Sbjct: 1631 M----GMD---L-YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 373 TLAQ-----TKDAVRDGLRAIKNTIDDG------------------------AVVPGAGA 403
+ + + + DG + + A+
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT----L 1738
Query: 404 FEVAAWHALQNYKNTVK-----GKSRLG----IQAYAEAL-------LI----------I 437
E AA+ L++ G S LG + + A+ + ++ +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHS-LGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 438 PKT---------IAVNSG----FDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAG 484
P+ IA+N G +Q+ L + E G+ G V + VN N
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-VN----YN--VEN 1850
Query: 485 IYDNLTVKRQIINSWIISGLHPRVITEGFTQARLKALE----VLESLKITTPPSREILLD 540
+Q + +G L+AL+ VL +K+ ++I +
Sbjct: 1851 --------QQY----VAAG-------------DLRALDTVTNVLNFIKL-----QKIDII 1880
Query: 541 VARTSLRT-KVEREL 554
+ SL +VE L
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
Score = 48.5 bits (115), Expect = 6e-06
Identities = 69/397 (17%), Positives = 111/397 (27%), Gaps = 156/397 (39%)
Query: 314 LSLACGGTAMNSVEG--LEPAHLGYAGSV----FEHVLGE--EKFTFVEECKNPQSVTIL 365
L+L+ G S+E L P + S F +L E E F +E P + L
Sbjct: 9 LTLSHG-----SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE---PTTPAEL 60
Query: 366 L--------KGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHA----LQ 413
+ + Q + L +N +G ++ HA L
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN--------DI---HALAAKLL 109
Query: 414 NYKNTVKGKSRLGIQAYAEALLIIPKTI----------AVNSG-------FDAQ------ 450
+T K++ I+ Y A ++ + AV G F Q
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 451 -DTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIIN--SWI------- 500
+ L L + V + S E L+ D V Q +N W+
Sbjct: 170 FEELRDLYQT--YHVLVGDLIKF-SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 501 ---------IS-------------------GLHPR---------------VIT------- 510
IS G P ++T
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 511 ---EGFTQARLKALEVL--------ESLKITTPPSREI-------------LLDVARTSL 546
E F + KA+ VL E+ T+ P + +L ++ +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT- 345
Query: 547 RTKVERELADL---LAEPNSVP-SLRNSAT--VNSGF 577
+ +V+ + L V SL N A V SG
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 2e-06
Identities = 60/504 (11%), Positives = 133/504 (26%), Gaps = 178/504 (35%)
Query: 3 ELMEMKHKTPGD--SCLVKGVVLDHGARH-PDMPKSV-KNA---HILTC--NISMEY--- 50
E E +++ D S V + + DMPKS+ HI+ +S
Sbjct: 10 ETGEHQYQY-KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 51 ----EKSGSG-------------PWCATPGHAQVREERAHPDMQHQHGIREEGVVLNHGA 93
K + +P ++ E+ P M + I + + N
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSP----IKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 94 RHPDM----PKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARHPDMP---KSV-- 144
+ + K V++ G + K+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPA-----------KNVLI-DG-----VLGSGKTWVA 167
Query: 145 ----KNAHILTCN------ISMEYEKSDVCIILVKGVVLNHGARHPDMPKSVKNAHILTC 194
+ + ++++ S ++ +M + + + +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--------------EMLQKL--LYQIDP 211
Query: 195 NISMEYEKSSQGGHQPEISLAKGIANQI---QHPTASLIARASTAMDDMTGDGTT----- 246
N + + SS + S+ + + + L+ + ++ +
Sbjct: 212 NWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLV------LLNVQ-NAKAWNAFN 263
Query: 247 --STVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDP-QSLDLFA------- 296
+L+ + + + D + + P + L
Sbjct: 264 LSCKILLT-----TRFKQVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 297 ----RE---------GIIA--LRRAKRR-------NMERLSLACGGTAM-NSVEGLEPA- 332
RE IIA +R N ++L+ T + +S+ LEPA
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-----TIIESSLNVLEPAE 370
Query: 333 --HLGYAGSVF-------EHVLG--------EEKFTFVEEC-------KNPQSVTILLKG 368
+ SVF +L + V + K P+ TI +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-- 428
Query: 369 PNKHTLAQTKDAVRDGLRAIKNTI 392
++ + A+ +I
Sbjct: 429 ---PSIYLELKVKLENEYALHRSI 449
Score = 48.7 bits (115), Expect = 6e-06
Identities = 66/448 (14%), Positives = 133/448 (29%), Gaps = 133/448 (29%)
Query: 156 MEYEKSDVCIILVKGVVLNHGARH-PDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISL 214
+Y+ D+ + V N + DMPKS+ L+ E + I
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-----LS---KEEID---------HI-- 54
Query: 215 AKGIANQIQHPTASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFA 274
I A ++ + + E+L+ ++ +K +
Sbjct: 55 -------IMSKDA--VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQ 104
Query: 275 PDCST----SDRYRTGIDPQSLDLF--AR-EGIIALRRA--KRRNMERLSL----ACGGT 321
P T R R D Q + +R + + LR+A + R + + + G T
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 322 AMNSVEGLEPAHLGYAGSVFEHVLGEEKFTF------VEECKNPQSVTILLKGPNK--HT 373
+ A V + K F ++ C +P++V +L K +
Sbjct: 165 WV-------------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQ 208
Query: 374 LAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEA 433
+ + D IK I +Q + L + Y
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHS-----------------IQAELRRL-----LKSKPYENC 246
Query: 434 LLII-----PKTIAVNSGFDAQ-DTLVKLQEACGEAPGVA--VGVDVNSGEVLNPTSAGI 485
LL++ K F+ L+ + V + + L+ S +
Sbjct: 247 LLVLLNVQNAKAWNA---FNLSCKILLTTRFK-----QVTDFLSAATTTHISLDHHSMTL 298
Query: 486 YDNLTVKRQIINSWI----------ISGLHPRVITEGFTQARLKALEVLESLKITTPPSR 535
+ + ++ ++ + +PR + ++ + ES++ +
Sbjct: 299 TPDEV--KSLLLKYLDCRPQDLPREVLTTNPRRL----------SI-IAESIRD--GLAT 343
Query: 536 -EILLDVARTSLRTKVERELADLLAEPN 562
+ V L T +E L L EP
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVL--EPA 369
Score = 47.5 bits (112), Expect = 1e-05
Identities = 76/499 (15%), Positives = 145/499 (29%), Gaps = 143/499 (28%)
Query: 13 GDSCLVKGVVLDHGARHPDMPKSVKNAHILT---CNIS---MEYEKS----GSGPWCATP 62
G + + V L + M + L CN +E + W +
Sbjct: 162 GKTWVALDVCLSYK-VQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-- 215
Query: 63 GHAQVREERAHPDMQHQHGIREEGVVLNHGARHPDMPKS------VKNAHILTCNISMEY 116
R + + H I+ E L + V+NA
Sbjct: 216 -----RSDHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQNAKAW-------- 259
Query: 117 EKSDV-CIILV----KGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGV 171
++ C IL+ K V D + HI + SM +V +L+K
Sbjct: 260 NAFNLSCKILLTTRFKQVT--------DFLSAATTTHISLDHHSMTLTPDEVKSLLLK-- 309
Query: 172 VLNHGARHPDMPKSVKNAHILTCNISM---------------EYEKSSQGGHQPEISLAK 216
L+ R D+P+ V + +S+ ++ + E SL
Sbjct: 310 YLDC--RPQDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 217 GIANQIQH--------PTASLIARASTAMDDMTGDGTTSTVLVI--GELLKQADIYIAEV 266
+ + P ++ I + +L + +++K + +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI---------------PTILLSLIWFDVIKSDVMVVVN- 409
Query: 267 NLKMHKFAPDCSTSDRYRTGIDPQSLDLFA-REGIIALRRA--KRRNMERLSLACGGTAM 323
K+HK++ I L+L E AL R+ N+ + +
Sbjct: 410 --KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIP 466
Query: 324 NSVEGLEPAHLGYAGSVFEHVLGEEK-------------FTFVEECKNPQSVTILLKGPN 370
++ +H+G+ H+ E F F+E+ K I
Sbjct: 467 PYLDQYFYSHIGH------HLKNIEHPERMTLFRMVFLDFRFLEQ-K------IRHDSTA 513
Query: 371 KHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNY-KNTVKGKS----RL 425
+ + ++ L+ K I D P A L +N + K R+
Sbjct: 514 WNASGSILNTLQQ-LKFYKPYICDND--PKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 426 GIQA-----YAEALLIIPK 439
+ A + EA + +
Sbjct: 571 ALMAEDEAIFEEAHKQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.5 bits (96), Expect = 2e-04
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 543 RTSLRTKVERELADLLAEPNSVPSLRNSATV 573
+ +L+ K++ L L +S P+L AT+
Sbjct: 19 KQALK-KLQASLK--LYADDSAPALAIKATM 46
Score = 31.5 bits (70), Expect = 0.47
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 14/43 (32%)
Query: 560 EPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDV 602
E ++ L+ S +KL A AP +A+ +
Sbjct: 18 EKQALKKLQAS-------------LKLY-ADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 2.7
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 257 KQADIYIAEVNLKMHKFAPDCS 278
KQA + + +LK +A D +
Sbjct: 19 KQA-LKKLQASLK--LYADDSA 37
Score = 28.8 bits (63), Expect = 3.5
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 33/59 (55%)
Query: 416 KNTVKGK--SRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDV 472
K +K K + L + YA D+ AP +A+ +
Sbjct: 19 KQALK-KLQASL--KLYA------D------------DS----------APALAIKATM 46
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 43.3 bits (103), Expect = 2e-04
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 378 KDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLII 437
K D L A + +++G +VPG G + A A++ ++G G + AL
Sbjct: 391 KHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEP 449
Query: 438 PKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKR 493
+ IA N+G++ + ++ G + +GE ++ AGI D V R
Sbjct: 450 ARQIAENAGYEGSVIVQQILAETK---NPRYGFNAATGEFVDMVEAGIVDPAKVTR 502
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 40.6 bits (96), Expect = 0.001
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 378 KDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLII 437
KD V D L A + + +G +V G G V L+ GI AL
Sbjct: 393 KDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLS-GANSDQDAGIAIIRRALEAP 450
Query: 438 PKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKR 493
+ IA N+G D K++E+ A G + + E + G+ D V R
Sbjct: 451 MRQIAENAGVDGAVVAGKVRES----SDKAFGFNAQTEEYGDMFKFGVIDPAKVVR 502
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.9 bits (80), Expect = 0.11
Identities = 42/262 (16%), Positives = 71/262 (27%), Gaps = 65/262 (24%)
Query: 199 EYEKSSQGGHQPEISLAKGIANQI--QHPTASLIARASTAMDDMTGDGTTSTVLVIGELL 256
E G+ PE K + ++ + A TA G + I E
Sbjct: 906 LIEPELFNGYNPE---KKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETG 962
Query: 257 KQADIYIAEVNLK--MHKFAPDCSTSDRY-----RTGIDPQS----------LDLFAREG 299
+ V L + P DR TG + ++ +D
Sbjct: 963 E------YSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFV 1016
Query: 300 IIALRRA-------------KRRNMERLSLACGGTAMNSVEGLEPAHLGYA--GSVFEHV 344
++++ A K ++ + C G+ M V L V
Sbjct: 1017 LVSVVEAFIASGITDPYEMYKYVHVSEVG-NCSGSGMGGVSALRGMFKDRFKDEPVQ--- 1072
Query: 345 LGEEKFTFVEECKN---PQSVTILL--KGPNKHTL---AQTKDAVRDGLRAIKNTIDDGA 396
E N +L+ GP K + A + ++V G+ I +
Sbjct: 1073 ----NDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARIC 1128
Query: 397 VVPGAGAF------EVAAWHAL 412
+V G F E A
Sbjct: 1129 IVGGYDDFQEEGSFEFGNMKAT 1150
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 29.8 bits (67), Expect = 3.0
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 32/97 (32%)
Query: 280 SDRYRTGIDPQSLDLF-----AREGII--ALRRAK-----RR---NMERLSLACGGTAMN 324
+RTG+ P +LF REG++ A+R ++ RR + L GT +
Sbjct: 783 YSSFRTGLKPT--ELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRS 840
Query: 325 SV----------EGLEPAHLGYAGSV-----FEHVLG 346
+G+ P + + +V FE V+G
Sbjct: 841 LYGEVIQVAYGDDGVFPMYSAHGKTVDVNRIFERVVG 877
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics,
PSI-2, protein structure initiative; 2.10A {Silicibacter
pomeroyi dss-3}
Length = 154
Score = 28.7 bits (65), Expect = 3.6
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 381 VRDGLRAIKNTIDDGAVVPGAGAFEVAA 408
+R G + + G V GA A
Sbjct: 15 IRAGAKNLLEGAFSGMRVEGAETVSDAL 42
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 28.9 bits (65), Expect = 6.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 493 RQIINSWIISGLHPRVIT 510
+ ++ SWI GL R IT
Sbjct: 213 KNMVLSWIEEGLEERAIT 230
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.384
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,625,443
Number of extensions: 597386
Number of successful extensions: 1552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1451
Number of HSP's successfully gapped: 211
Length of query: 629
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 530
Effective length of database: 3,937,614
Effective search space: 2086935420
Effective search space used: 2086935420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)