RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14945
(629 letters)
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 118 bits (296), Expect = 1e-31
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 38/191 (19%)
Query: 169 KGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTAS 228
+GVV++ HP MPK V+NA I N ++E +K+ + + I+ + +
Sbjct: 1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKT-ETDAKINITSPDQLMS-------- 51
Query: 229 LIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGID 288
L+Q + + ++ + + + + GID
Sbjct: 52 --------------------------FLEQEEKMLKDMVDHIAQTGANVVFVQK---GID 82
Query: 289 PQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEE 348
+ A+ GI+A+RR K+ +ME+L+ A G + +V+ L P LGYA V E L E
Sbjct: 83 DLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGE 142
Query: 349 KFTFVEECKNP 359
FVE CKNP
Sbjct: 143 NMIFVEGCKNP 153
Score = 52.3 bits (125), Expect = 1e-08
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 19 KGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
+GVV+D HP MPK V+NA I N ++E +K
Sbjct: 1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKK 34
Score = 51.9 bits (124), Expect = 1e-08
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 127 KGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 37
Score = 49.6 bits (118), Expect = 9e-08
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 86 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
GVV++ HP MPK V+NA I N ++E +K++
Sbjct: 2 GVVIDKEVVHPRMPKRVENAKIALINEALEVKKTET 37
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 114 bits (287), Expect = 2e-30
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 39/203 (19%)
Query: 167 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPT 226
+++GV++N HP M + +KN I+ + S+EY+K
Sbjct: 4 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK------------------------ 39
Query: 227 ASLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTG 286
+ D + +L+ + YI ++ + + PD + G
Sbjct: 40 -----------GESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVIT---EKG 85
Query: 287 IDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFE-HVL 345
I + R + A+RR ++ + R++ ACG ++ E L +G + E +
Sbjct: 86 ISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKI 145
Query: 346 GEEKFTFVEECKNPQSVTILLKG 368
G+E FTF+ +CK+P++ TILL+G
Sbjct: 146 GDEYFTFITDCKDPKACTILLRG 168
Score = 59.7 bits (144), Expect = 4e-11
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 14 DSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSG 56
DSC+++GV+++ HP M + +KN I+ + S+EY+K S
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 43
Score = 53.5 bits (128), Expect = 5e-09
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 125 LVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+++GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 4 VLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 42
Score = 49.7 bits (118), Expect = 1e-07
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 85 EGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
GV++N HP M + +KN I+ + S+EY+K +
Sbjct: 6 RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGES 42
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 111 bits (278), Expect = 3e-29
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 38/190 (20%)
Query: 168 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTA 227
+ G+V++ H MP VKNA I + ++E +K+ + +IS I + +
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIE-AKVQISDPSKIQDFLNQ--- 56
Query: 228 SLIARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGI 287
+ + + V K+ K + + GI
Sbjct: 57 ------------------------------ETNTFKQMVE-KIKKSGANVVLC---QKGI 82
Query: 288 DPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGE 347
D + A+EGI A+RR K+ +ME+L+ A G + ++ L P+ LG A +V E +G+
Sbjct: 83 DDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD 142
Query: 348 EKFTFVEECK 357
++ TFV CK
Sbjct: 143 DRMTFVMGCK 152
Score = 52.7 bits (126), Expect = 7e-09
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 126 VKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
+ G+V++ H MP VKNA I + ++E +K+++
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 38
Score = 52.3 bits (125), Expect = 9e-09
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 18 VKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
+ G+V+D H MP VKNA I + ++E +K
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKK 35
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 110 bits (277), Expect = 3e-29
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 38/190 (20%)
Query: 170 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSSQGGHQPEISLAKGIANQIQHPTASL 229
G++++ HP MP VK+A I + +E +K + +I+ P+
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNL-----------RIEDPS--- 46
Query: 230 IARASTAMDDMTGDGTTSTVLVIGELLKQADIYIAEVNLKMHKFAPDCSTSDRYRTGIDP 289
+I + L Q + + E+ K+ + + + GID
Sbjct: 47 ---------------------MIQKFLAQEENMLREMVDKIKSVGANVVIT---QKGIDD 82
Query: 290 QSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAGSVFEHVLGEEK 349
+ +R GI A+RR K+ +M++L+ A G + +++++ + + LG A V + +GE+
Sbjct: 83 MAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDY 142
Query: 350 FTFVEECKNP 359
TFV CKNP
Sbjct: 143 MTFVTGCKNP 152
Score = 47.7 bits (113), Expect = 4e-07
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 20 GVVLDHGARHPDMPKSVKNAHILTCNISMEYEKSGSG 56
G+++D HP MP VK+A I + +E +K
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFD 37
Score = 47.7 bits (113), Expect = 4e-07
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 86 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 121
G++++ HP MP VK+A I + +E +K +
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 36
Score = 47.7 bits (113), Expect = 4e-07
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 128 GVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDV 163
G++++ HP MP VK+A I + +E +K +
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 36
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 75.5 bits (185), Expect = 6e-16
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 1/139 (0%)
Query: 360 QSVTILLKGPNKHTLAQTKDAVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTV 419
Q+ T+L +G + ++ + R I + I + + + G GA E L Y N+V
Sbjct: 93 QAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSV 152
Query: 420 KGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLN 479
G+ +L I+A+A+AL IIP+T+A N+G D +TL+K +A E ++VGVD+++ V +
Sbjct: 153 GGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIK-LKADDEKGRISVGVDLDNNGVGD 211
Query: 480 PTSAGIYDNLTVKRQIINS 498
+ G+ D L VK + S
Sbjct: 212 MKAKGVVDPLRVKTHALES 230
Score = 47.4 bits (112), Expect = 2e-06
Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 500 IISGLHPRVITEGFTQARLKALEVLES------LKITTPPSREILLDVARTSLRTKVERE 553
+ G+HP VI+ G+ A +A ++++ L E+ + +A+ + +
Sbjct: 98 LDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQ 157
Query: 554 LADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSA 613
LA ++ + + N+G D +TL+K +A E ++VGVD+++ V + +
Sbjct: 158 LAIEAFA-KALEIIPRTLAENAGIDPINTLIK-LKADDEKGRISVGVDLDNNGVGDMKAK 215
Query: 614 GIYDNLTVKRQIINS 628
G+ D L VK + S
Sbjct: 216 GVVDPLRVKTHALES 230
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 73.6 bits (180), Expect = 3e-15
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 380 AVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPK 439
A + R I A G GA L++Y + G+ +L I+ +A+A+ IP+
Sbjct: 110 ASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPR 169
Query: 440 TIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
+A N+G D D L+KL+ + G++V +GE+ + G+ + + V +Q I S
Sbjct: 170 ALAENAGLDPIDILLKLRAEHAKGN-KTYGINVFTGEIEDMVKNGVIEPIRVGKQAIES 227
Score = 45.1 bits (106), Expect = 9e-06
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 496 INSWIISGLHPRVITEGFTQARLKALEVLESLKITTPPSREILLDVARTSLRTK------ 549
I +HP VI+EG+ A +A V++ + + A + R +
Sbjct: 90 AQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKI 149
Query: 550 --VERELADLLAEPNSVPSLRNSATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEV 607
++ + A+ + N+G D D L+KL+ + G++V +GE+
Sbjct: 150 GGRQQLAIEKFADAIEEIPRALA--ENAGLDPIDILLKLRAEHAKGN-KTYGINVFTGEI 206
Query: 608 LNPTSAGIYDNLTVKRQIINS 628
+ G+ + + V +Q I S
Sbjct: 207 EDMVKNGVIEPIRVGKQAIES 227
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 46.7 bits (110), Expect = 3e-06
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 380 AVRDGLRAIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPK 439
A + AV+P GA E+ L Y V GK L I+ +A+AL IIPK
Sbjct: 123 AAEKAQEILDEIAIR-AVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPK 181
Query: 440 TIAVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
T+A N+G D + LVK+ G+ +G+DV G+ + GI + L VK+Q I S
Sbjct: 182 TLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKS 239
Score = 39.0 bits (90), Expect = 0.001
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 494 QIINSWIISGLHPRVITEGFTQARLKALEVLE--SLKITTPPSREILLDVARTSLRTKVE 551
+ + +HP +IT+G+ A KA E+L+ +++ P +++A +
Sbjct: 101 RKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQ 160
Query: 552 RELADLLAEPNSVPSLRN---SATVNSGFDAQDTLVKLQEACGEAPGVAVGVDVNSGEVL 608
+ LA N +L+ + N+G D + LVK+ G+ +G+DV G+
Sbjct: 161 VGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPA 219
Query: 609 NPTSAGIYDNLTVKRQIINS 628
+ GI + L VK+Q I S
Sbjct: 220 DMLEKGIIEPLRVKKQAIKS 239
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 41.4 bits (97), Expect = 2e-05
Identities = 5/53 (9%), Positives = 14/53 (26%), Gaps = 3/53 (5%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEKS 53
++ + + +S LVK V + + + +
Sbjct: 54 NIKFEKKAGEGVEESELVKAVTIL---IRGGTEHVIDEVERALEDAVKVVKDV 103
Score = 32.2 bits (73), Expect = 0.038
Identities = 9/89 (10%), Positives = 22/89 (24%), Gaps = 11/89 (12%)
Query: 119 SDVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGAR 178
+ + + VK V ++ ++K + LVK V +
Sbjct: 30 AKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESE--------LVKAVTIL---I 78
Query: 179 HPDMPKSVKNAHILTCNISMEYEKSSQGG 207
+ + + + G
Sbjct: 79 RGGTEHVIDEVERALEDAVKVVKDVMEDG 107
Score = 31.4 bits (71), Expect = 0.077
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 535 REILLDVARTSLRTKVERELADLLAE 560
E LL +A TS+ K +LLA+
Sbjct: 6 EETLLKIAATSITGKNAESHKELLAK 31
Score = 27.2 bits (60), Expect = 2.5
Identities = 0/26 (0%), Positives = 3/26 (11%)
Query: 94 RHPDMPKSVKNAHILTCNISMEYEKS 119
+ + +
Sbjct: 78 IRGGTEHVIDEVERALEDAVKVVKDV 103
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
thermophilus [TaxId: 274]}
Length = 255
Score = 43.0 bits (100), Expect = 4e-05
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 387 AIKNTIDDGAVVPGAGAFEVAAWHALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSG 446
IK +VPG G + A A++ ++G G + AL + IA N+G
Sbjct: 128 KIKALAIPVGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAG 187
Query: 447 FDAQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYDNLTVKRQIINS 498
++ + ++ G + +GE ++ AGI D V R + +
Sbjct: 188 YEGSVIVQQILAETKNP---RYGFNAATGEFVDMVEAGIVDPAKVTRSALQN 236
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 36.4 bits (84), Expect = 0.001
Identities = 3/52 (5%), Positives = 12/52 (23%), Gaps = 3/52 (5%)
Query: 1 MVELMEMKHKTPGDSCLVKGVVLDHGARHPDMPKSVKNAHILTCNISMEYEK 52
+++ + + D+ + V + V +
Sbjct: 51 NIKVDKKNGGSVNDTQFISAVSIL---IRGGTDHVVSEVERALNDAIRVVAI 99
Score = 31.8 bits (72), Expect = 0.059
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 535 REILLDVARTSLRTKVERELADLLAE 560
L +A T+L K D LA+
Sbjct: 3 DATLRKIALTALSGKNTGLSNDFLAD 28
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 35.6 bits (82), Expect = 0.003
Identities = 6/54 (11%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 1 MVELMEMKHKTPGDSCLVKG---VVLDHGARH--PDMPKSVKNAHILTCNISME 49
+++++ + D+ L+ +++ H +M +S+ ++ + ++E
Sbjct: 53 NIQVVKKQGGAIDDTQLINKAVSILVRGETEHVVDEMERSITDS-LHVVASALE 105
Score = 32.9 bits (75), Expect = 0.023
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 535 REILLDVARTSLRTKVERELADLLAE 560
+ +LL +A+TSL +K D LAE
Sbjct: 5 KALLLKMAQTSLNSKSASVAKDKLAE 30
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 33.6 bits (76), Expect = 0.031
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 410 HALQNYKNTVKGKSRLGIQAYAEALLIIPKTIAVNSGFDAQDTLVKLQEACGEAPGVAVG 469
A + ++G G AL K IA NSG + K++ G
Sbjct: 85 AAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAG-----HG 139
Query: 470 VDVNSGEVLNPTSAGIYDNLTVKRQ-IINSWIISGL 504
++ +G + +AG+ D + V R + N+ I+GL
Sbjct: 140 LNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGL 175
Score = 32.5 bits (73), Expect = 0.083
Identities = 24/155 (15%), Positives = 42/155 (27%), Gaps = 7/155 (4%)
Query: 220 NQIQHPTASLIARASTAMDDMTGDGTTS-TVLVI-----GELLKQADIYIAEVNLKMHKF 273
+ + A L+ + DD+ GDGTT+ TVL G A + + K
Sbjct: 1 DPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKA 60
Query: 274 APDCSTSDRYRTGIDPQSLDLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAH 333
+ + I + + L K E A+ + +
Sbjct: 61 VEKVTETLLKGAKIVAGG-GVTLLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFN 119
Query: 334 LGYAGSVFEHVLGEEKFTFVEECKNPQSVTILLKG 368
G V + + +L G
Sbjct: 120 SGLEPGVVAEKVRNLPAGHGLNAQTGVYEDLLAAG 154
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 29.1 bits (64), Expect = 1.1
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 16/128 (12%)
Query: 120 DVCIILVKGVVLNHGARHPDMPKSVKNAHILTCNISMEYEKSDVCIILVKGVVLNHGARH 179
+ I + P +++N+ + + + DV + R
Sbjct: 26 EAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYDLVRE 85
Query: 180 PDMPKSVKNAHILTCNISMEYEKSSQGGHQP----------------EISLAKGIANQIQ 223
K + + Y + EI A+ + N
Sbjct: 86 LKGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIKNAQVVGNPGL 145
Query: 224 HPTASLIA 231
AS A
Sbjct: 146 VKGASGQA 153
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
{Escherichia coli [TaxId: 562]}
Length = 347
Score = 29.1 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 293 DLFAREGIIALRRAKRRNMERLSLACGGTAMNSVEGLEPAHLGYAG 338
L + + + RA +++L GG + G EP H GY G
Sbjct: 16 SLTLHQDPVYVTRADAPVAGKVALLSGGGS-----GHEPMHCGYIG 56
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 29.0 bits (64), Expect = 1.6
Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 9/138 (6%)
Query: 25 HGARHPDMPKSVKNAHILTCNISMEYEKSGSGPWCATPGHA----QVREERAHPDMQHQH 80
+ + ++T NI ++++GS G+ VR E+ +
Sbjct: 79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIK 138
Query: 81 GIREEGVVLNHGARHPDMPKSVKNAHIL----TCNISMEYEKSDVCIILVKGVVLNHGAR 136
+ V L P V L ++ + I+L +V+ A
Sbjct: 139 KLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAE 198
Query: 137 HPDMPKSVKNAHILTCNI 154
P + ++ N+
Sbjct: 199 LPLITVR-SGGKLVIVNL 215
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domains 2 and 5 {Streptomyces
antibioticus [TaxId: 1890]}
Length = 96
Score = 26.6 bits (59), Expect = 3.1
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 501 ISGLHPRVITEGFTQARLKALEVLESLKITTPPSREI 537
+ G+ V+ QAR L +L+ + E+
Sbjct: 57 LDGIPASVLAAALKQARDARLHILDVMMEAIDTPDEM 93
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 26.9 bits (58), Expect = 7.4
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 530 TTPPSREILLDVARTSLRTKVERELADLLAEPNSVPSLRNSATVNSGFDAQD 581
+ R + + A + +VER L L E + A +
Sbjct: 10 GSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADE 61
>d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x),
transpeptidase domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 368
Score = 27.0 bits (58), Expect = 7.9
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 449 AQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYD 487
+ + QE A V +GE+L T +D
Sbjct: 10 METQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFD 48
Score = 27.0 bits (58), Expect = 7.9
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 579 AQDTLVKLQEACGEAPGVAVGVDVNSGEVLNPTSAGIYD 617
+ + QE A V +GE+L T +D
Sbjct: 10 METQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFD 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.384
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,263,314
Number of extensions: 102520
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 53
Length of query: 629
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 538
Effective length of database: 1,158,166
Effective search space: 623093308
Effective search space used: 623093308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)