BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14949
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C,
Nmr, Minimized Average Structure
Length = 104
Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 79/98 (80%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
VE GKKIF + CAQCHT +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW
Sbjct: 2 DVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKE 61
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
TL YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 62 ETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLK 99
>pdb|1CRC|A Chain A, Cytochrome C At Low Ionic Strength
pdb|1CRC|B Chain B, Cytochrome C At Low Ionic Strength
pdb|1HRC|A Chain A, High-Resolution Three-Dimensional Structure Of Horse Heart
Cytochrome C
pdb|3O1Y|A Chain A, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O1Y|B Chain B, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O1Y|C Chain C, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|A Chain A, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|B Chain B, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|C Chain C, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|1WEJ|F Chain F, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
Length = 105
Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 79/98 (80%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
VE GKKIF + CAQCHT +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW
Sbjct: 3 DVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKE 62
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
TL YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 63 ETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLK 100
>pdb|2PCB|B Chain B, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U75|B Chain B, Electron Transfer Complex Between Horse Heart Cytochrome
C And Zinc- Porphyrin Substituted Cytochrome C
Peroxidase
pdb|1AKK|A Chain A, Solution Structure Of Oxidized Horse Heart Cytochrome C,
Nmr, Minimized Average Structure
pdb|1FI7|A Chain A, Solution Structure Of The Imidazole Complex Of
Cytochrome C
pdb|1FI9|A Chain A, Solution Structure Of The Imidazole Complex Of
Cytochrome C
pdb|1I5T|A Chain A, Solution Structure Of Cyanoferricytochrome C
pdb|1LC1|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C
In 30% Acetonitrile Solution, Nmr Minimized Average
Structure
pdb|1LC2|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C
In 30% Acetonitrile Solution, Nmr 30 Structures
pdb|1M60|A Chain A, Solution Structure Of Zinc-Substituted Cytochrome C
pdb|1OCD|A Chain A, Cytochrome C (Oxidized) From Equus Caballus, Nmr,
Minimized Average Structure
pdb|2FRC|A Chain A, Cytochrome C (Reduced) From Equus Caballus, Nmr,
Minimized Average Structure
pdb|2GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C,
Nmr, 40 Structures
pdb|3NBS|A Chain A, Crystal Structure Of Dimeric Cytochrome C From Horse
Heart
pdb|3NBS|B Chain B, Crystal Structure Of Dimeric Cytochrome C From Horse
Heart
pdb|3NBS|C Chain C, Crystal Structure Of Dimeric Cytochrome C From Horse
Heart
pdb|3NBS|D Chain D, Crystal Structure Of Dimeric Cytochrome C From Horse
Heart
pdb|3NBT|A Chain A, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|B Chain B, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|C Chain C, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|D Chain D, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|E Chain E, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|F Chain F, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
Length = 104
Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 79/98 (80%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
VE GKKIF + CAQCHT +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW
Sbjct: 2 DVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKE 61
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
TL YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 62 ETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLK 99
>pdb|2B4Z|A Chain A, Crystal Structure Of Cytochrome C From Bovine Heart At
1.5 A Resolution.
pdb|2YBB|Y Chain Y, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 104
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/96 (70%), Positives = 79/96 (82%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
VE GKKIF + CAQCHT +GG +K GPNL G+ GR+TGQAPGF YTDANKNKGITW
Sbjct: 3 VEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEE 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
TL YL+NPKKYIPGTKM+F G++K+ +REDLIAYL
Sbjct: 63 TLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYL 98
>pdb|2AIU|A Chain A, Crystal Structure Of Mouse Testicular Cytochrome C At
1.6 Angstrom
Length = 105
Score = 148 bits (373), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 65/96 (67%), Positives = 78/96 (81%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
E GKKIF + CAQCHT +GG +K GPNL+G+ GR+TGQAPGF YTDANKNKG+ WS
Sbjct: 4 AEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEE 63
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
TL YL+NPKKYIPGTKM+F G++K+ +REDLI YL
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYL 99
>pdb|1J3S|A Chain A, Solution Structure Of Reduced Recombinant Human
Cytochrome C
Length = 104
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/96 (65%), Positives = 76/96 (79%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
VE GKKIF C+QCHT +GG +K GPNL G+ GR+TGQAPG+ YT ANKNKGI W
Sbjct: 3 VEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGED 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
TL YL+NPKKYIPGTKM+F G++K+++R DLIAYL
Sbjct: 63 TLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYL 98
>pdb|1CYC|A Chain A, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C
At 2.3 Angstroms Resolution. Ii. Structure And Function
pdb|1CYC|B Chain B, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C
At 2.3 Angstroms Resolution. Ii. Structure And Function
Length = 103
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 79/98 (80%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
V GKK F + CAQCHT GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+ +
Sbjct: 3 VAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNEN 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
TL YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL +
Sbjct: 63 TLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKS 100
>pdb|3CYT|O Chain O, Redox Conformation Changes In Refined Tuna Cytochrome C
pdb|3CYT|I Chain I, Redox Conformation Changes In Refined Tuna Cytochrome C
pdb|5CYT|R Chain R, Refinement Of Myoglobin And Cytochrome C
Length = 104
Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 78/98 (79%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
V GKK F + CAQCHT GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+
Sbjct: 4 VAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNND 63
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
TL YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL +
Sbjct: 64 TLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKS 101
>pdb|1I54|A Chain A, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins
pdb|1I54|B Chain B, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins
pdb|1I55|A Chain A, Cytochrome C (Tuna) With 2zn:1fe Mixed-Metal Porphyrins
pdb|1I55|B Chain B, Cytochrome C (Tuna) With 2zn:1fe Mixed-Metal Porphyrins
pdb|1LFM|A Chain A, Crystal Structure Of Cobalt(Iii)-Substituted Cytochrome C
(Tuna)
pdb|1LFM|B Chain B, Crystal Structure Of Cobalt(Iii)-Substituted Cytochrome C
(Tuna)
Length = 103
Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 78/98 (79%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
V GKK F + CAQCHT GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+
Sbjct: 3 VAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNND 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
TL YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL +
Sbjct: 63 TLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKS 100
>pdb|3NWV|A Chain A, Human Cytochrome C G41s
pdb|3NWV|B Chain B, Human Cytochrome C G41s
pdb|3NWV|C Chain C, Human Cytochrome C G41s
pdb|3NWV|D Chain D, Human Cytochrome C G41s
Length = 104
Score = 138 bits (347), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 75/96 (78%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
VE GKKIF C+QCHT +GG +K GPNL G+ GR+T QAPG+ YT ANKNKGI W
Sbjct: 3 VEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTSQAPGYSYTAANKNKGIIWGED 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
TL YL+NPKKYIPGTKM+F G++K+++R DLIAYL
Sbjct: 63 TLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYL 98
>pdb|4DY9|A Chain A, Leishmania Major Peroxidase Is A Cytochrome C Peroxidase
pdb|4GED|B Chain B, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 113
Score = 128 bits (322), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 74/99 (74%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
VE G+K+F AQCHTA +GG+N VGPNLFG+V R +G+ GF Y+ AN G+ W+
Sbjct: 14 VERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRPSGKVEGFTYSKANAESGVIWTPE 73
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
LD+YL+NPKK++PGTKM F G++K ++R D+IAYL TL
Sbjct: 74 VLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETL 112
>pdb|1RAQ|A Chain A, The Structure And Function Of Omega Loop A Replacements In
Cytochrome C
Length = 108
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT ++GGANKVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|3CXH|W Chain W, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|1YEA|A Chain A, Structure Determination And Analysis Of Yeast Iso-2-
Cytochrome C And A Composite Mutant Protein
Length = 112
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 67/98 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT EGG NKVGPNL G+ GR +GQ G+ YTDAN NK + W
Sbjct: 11 SAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDE 70
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
++ YL NP KYIPGTKM F GL+KEKDR DLI Y++
Sbjct: 71 DSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYMT 108
>pdb|1YEB|A Chain A, Structure Determination And Analysis Of Yeast Iso-2-
Cytochrome C And A Composite Mutant Protein
Length = 108
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT EGG NKVGPNL G+ GR +GQ G+ YTDAN NK + W
Sbjct: 7 SAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
++ YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 DSMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1RAP|A Chain A, The Structure And Function Of Omega Loop A Replacements In
Cytochrome C
Length = 108
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 68/97 (70%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT ++GGANKVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTFDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|2YK3|A Chain A, Crithidia Fasciculata Cytochrome C
pdb|2YK3|B Chain B, Crithidia Fasciculata Cytochrome C
pdb|2YK3|C Chain C, Crithidia Fasciculata Cytochrome C
Length = 114
Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 72/96 (75%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
G+K+F AQCHTAN+GGAN VGPNL+G+VGR +G G+ Y+ AN G+ W+ LD
Sbjct: 17 GEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLD 76
Query: 66 IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+YL+NP K++PGTKM F G++K ++R D+IAYL TL
Sbjct: 77 VYLENPXKFMPGTKMSFAGMKKPQERADVIAYLETL 112
>pdb|1U74|B Chain B, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|D Chain D, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|2BCN|B Chain B, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
Length = 108
Score = 125 bits (313), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1NMI|A Chain A, Solution Structure Of The Imidazole Complex Of Iso-1
Cytochrome C
pdb|2HV4|A Chain A, Nmr Solution Structure Refinement Of Yeast Iso-1-
Ferrocytochrome C
pdb|2ORL|A Chain A, Solution Structure Of The Cytochrome C- Para-Aminophenol
Adduct
pdb|3TYI|A Chain A, Crystal Structure Of Cytochrome C -
P-Sulfonatocalix[4]arene Complexes
pdb|3TYI|B Chain B, Crystal Structure Of Cytochrome C -
P-Sulfonatocalix[4]arene Complexes
Length = 108
Score = 125 bits (313), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|2PCC|B Chain B, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|D Chain D, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2GB8|B Chain B, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
Length = 108
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1S6V|B Chain B, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|D Chain D, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 108
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMCFGGLKKEKDRNDLITYL 103
>pdb|2JTI|B Chain B, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 108
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 67/97 (69%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKARCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1YTC|A Chain A, Thermodynamic Cycles As Probes Of Structure-Function
Relationships In Unfolded Proteins
Length = 112
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 66/98 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT EGG NKVGPNL G+ GR +GQ G+ YTDA NK + W
Sbjct: 11 SAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDAIINKNVKWDE 70
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
++ YL NP KYIPGTKM F GL+KEKDR DLI Y++
Sbjct: 71 DSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYMT 108
>pdb|2B12|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 67/97 (69%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM + GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMAYGGLKKEKDRNDLITYL 103
>pdb|1YIC|A Chain A, The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochrome C,
Nmr, 20 Structures
Length = 108
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|2YCC|A Chain A, Oxidation State-Dependent Conformational Changes In
Cytochrome C
Length = 108
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|2JQR|A Chain A, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 108
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +K GPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKCGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1YFC|A Chain A, Solution Nmr Structure Of A Yeast Iso-1-Ferrocytochrome C
Length = 108
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1KYO|W Chain W, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|3CX5|W Chain W, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|1YCC|A Chain A, High-Resolution Refinement Of Yeast Iso-1-Cytochrome C And
Comparisons With Other Eukaryotic Cytochromes C
Length = 108
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|2B11|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|D Chain D, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 67/97 (69%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM + GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMAWGGLKKEKDRNDLITYL 103
>pdb|2B0Z|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMAIGGLKKEKDRNDLITYL 103
>pdb|1CSW|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F G++KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGMKKEKDRNDLITYL 103
>pdb|1FHB|A Chain A, Three-Dimensional Solution Structure Of The Cyanide Adduct
Of A Met80ala Variant Of Saccharomyces Cerevisiae Iso-1-
Cytochrome C. Identification Of Ligand-Residue
Interactions In The Distal Heme Cavity
Length = 108
Score = 122 bits (305), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GRQ+GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRQSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTK F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKAAFGGLKKEKDRNDLITYL 103
>pdb|1IRV|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75
Replaced By Met And Cys 102 Replaced By Thr
Length = 108
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KY+PGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYMPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1CHH|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM + GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAYGGLKKEKDRNDLITYL 103
>pdb|1CTY|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly
Alters The Local Heme Environment
pdb|1CTZ|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly
Alters The Local Heme Environment
Length = 108
Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + +L NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|2B10|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|D Chain D, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 66/97 (68%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NPKKYIPGTKM GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMASGGLKKEKDRNDLITYL 103
>pdb|1CSV|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 121 bits (304), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F G +KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGFKKEKDRNDLITYL 103
>pdb|1LMS|A Chain A, Structural Model For An Alkaline Form Of Ferricytochrome C
Length = 108
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGT M F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPAKYIPGTAMAFGGLKKEKDRNDLITYL 103
>pdb|1CCR|A Chain A, Structure Of Rice Ferricytochrome C At 2.0 Angstroms
Resolution
Length = 112
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 68/93 (73%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
G+KIF CAQCHT ++G +K GPNL G+ GRQ+G PG+ Y+ A+KN + W +TL
Sbjct: 15 GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLY 74
Query: 66 IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
YL NP KYIPGTKMVFPGL K ++R DLI+YL
Sbjct: 75 DYLLNPXKYIPGTKMVFPGLXKPQERADLISYL 107
>pdb|1CSU|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F G +KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGCKKEKDRNDLITYL 103
>pdb|1CHJ|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F G +KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGAKKEKDRNDLITYL 103
>pdb|1CSX|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR D I YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDSITYL 103
>pdb|1IRW|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52
Replaced By Ala And Cys 102 Replaced By Thr
Length = 108
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDA K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAAIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|2LIR|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant
P71h In Oxidized States
pdb|2LIT|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant
P71h In Reduced States
Length = 108
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL N KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNHAKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1CRG|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDA K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1CHI|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM + G +KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAYGGAKKEKDRNDLITYL 103
>pdb|1CRH|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDA K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1CRI|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
pdb|1CRJ|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 118 bits (295), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 65/97 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDA K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + +L NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1CIF|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 64/97 (65%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ G +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYL 103
>pdb|1CIG|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 116 bits (291), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 64/97 (65%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ G +GQA G+ YTDA K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYL 103
>pdb|1CIE|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 64/97 (65%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDA K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYL 103
>pdb|1CIH|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 63/97 (64%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ G +GQA G+ YTDA K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + YL NP KYIPGTKM GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYL 103
>pdb|1HRO|A Chain A, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
pdb|1HRO|B Chain B, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
Length = 106
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
GK +F C CHT + GANKVGP+L+GVVGR +G PG++Y++AN GI W+ L
Sbjct: 10 EGKHLFHTICITCHT-DIKGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVL 68
Query: 65 DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
Y+++P+K +PGTKM +PG + R D+IAYL TL
Sbjct: 69 FKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLETL 105
>pdb|1CO6|A Chain A, Crystal Structure Of Ferrocytochrome C2 From
Rhodopseudomonas Viridis
pdb|1IO3|A Chain A, Crystal Structure Of Ferricytochrome C2 From
Rhodopseudomonas Viridis
pdb|1CRY|A Chain A, Application Of An Automatic Molecular Replacement
Procedure To Crystal Structure Of Cytochrome C2 From
Rhodopseudomonas Viridis
Length = 107
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
+G+++F + C CH+ G NKVGP L G+ GR +G GF Y+DANKN GITW+
Sbjct: 5 SGEQVF-KQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVF 63
Query: 65 DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
Y+++PK IPGTKM+F G++ E+ DLIAY+ +
Sbjct: 64 REYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFN 101
>pdb|1QN2|A Chain A, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|B Chain B, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|C Chain C, Cytochrome Ch From Methylobacterium Extorquens
Length = 100
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQ-APGFDYTDANKNKGITWSASTL 64
G+K F C CH + G VGP L GVVG + G+ A G+ ++DA K G+TW + L
Sbjct: 7 GEKAFA-PCKACHNFEKNG---VGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADL 62
Query: 65 DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
+L +PKK +PGTKMVFPG+ K +D+IAYL T
Sbjct: 63 KQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLKT 98
>pdb|3M97|X Chain X, Structure Of The Soluble Domain Of Cytochrome C552 With
Its Flexible Linker Segment From Paracoccus
Denitrificans
Length = 140
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
G+K+F + C CH + G + VGP+L GVVGR GF+Y+D K G W+ L
Sbjct: 47 GEKVFGK-CKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQ 103
Query: 66 IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
+L NPK + GTKM F GL K +DR +LIAYL
Sbjct: 104 EFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 137
>pdb|1C7M|A Chain A, Solution Structure Of The Functional Domain Of
Paracoccus Denitrificans Cytochrome C552 In The Reduced
State
pdb|1I6D|A Chain A, Solution Structure Of The Functional Domain Of
Paracoccus Denitrificans Cytochrome C552 In The Reduced
State
pdb|1I6E|A Chain A, Solution Structure Of The Functional Domain Of
Paracoccus Denitrificans Cytochrome C552 In The
Oxidized State
Length = 100
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
G+K+F + C CH + G + VGP+L GVVGR GF+Y+D K G W+ L
Sbjct: 7 GEKVFGK-CKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQ 63
Query: 66 IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
+L NPK + GTKM F GL K +DR +LIAYL
Sbjct: 64 EFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 97
>pdb|1QL3|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL4|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
Length = 99
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
G+K+F + C CH + G + VGP+L GVVGR GF+Y+D K G W+ L
Sbjct: 6 GEKVFGK-CKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQ 62
Query: 66 IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
+L NPK + GTKM F GL K +DR +LIAYL
Sbjct: 63 EFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 96
>pdb|2C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized
Rhodospirillum Rubrum Cytochrome C2
pdb|3C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized
Rhodospirillum Rubrum Cytochrome C2
Length = 112
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 13/107 (12%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDA---NKNKGITWSAS 62
G+K+ ++ C CHT ++GGANKVGPNLFGV + Y+++ K KG+TW+ +
Sbjct: 7 GEKV-SKKCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEA 65
Query: 63 TLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
L Y++NPK ++ +KM F L K+ + E++IAYL TL
Sbjct: 66 NLAAYVKNPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYLKTL 111
>pdb|1HH7|A Chain A, Refined Crystal Structure Of Cytochrome C2 From
Rhodopseudomonas Palustris At 1.4 Angstrom Resolution
pdb|1I8O|A Chain A, Rhodopseudomonas Palustris Cyt C2 Ammonia Complex At 1.15
Angstrom Resolution
pdb|1I8P|A Chain A, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|B Chain B, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|C Chain C, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|D Chain D, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|A Chain A, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|B Chain B, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|C Chain C, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|D Chain D, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
Length = 114
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 22/113 (19%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK---GITWSAS 62
G+ +F + C CH A++ N VGP L GVVGR+ G A GF Y+ N N G+ W+A
Sbjct: 6 GEAVF-KQCMTCHRADK---NMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTAD 61
Query: 63 TLDIYLQNPKKYIPG--------------TKMVFPGLRKEKDREDLIAYLSTL 101
+ YL +P ++ TKM F L E+ R+D++AYL+TL
Sbjct: 62 NIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYLATL 113
>pdb|1JDL|A Chain A, Structure Of Cytochrome C2 From Rhodospirillum Centenum
Length = 121
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSAS 62
G+ +F + C CH N VGP L GV+ RQ G APGF+Y+ N G+ W+
Sbjct: 8 GEAVFKK-CMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPE 66
Query: 63 TLDIYLQNPKKYIP--------------GTKMVFPGLRKEKDREDLIAYLSTL 101
+ YL +P ++ TKMVF L E++R+D++AYL
Sbjct: 67 NIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQF 118
>pdb|2BGV|X Chain X, X-Ray Structure Of Ferric Cytochrome C-550 From Paracoccus
Versutus
Length = 134
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 27/115 (23%)
Query: 6 GKKIFTRACAQCHTAN--------EGGANKVGPNLFGVVGRQTGQAPGFDYTD-----AN 52
G+K F + C CH +GG K GPNL+GVVGR+ GF Y D A
Sbjct: 8 GEKEFNK-CKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGILEVAE 64
Query: 53 KNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
KN + WS + L Y+ +PK ++ TKM F + K++ D++A+L+
Sbjct: 65 KNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKMTF---KLGKNQADVVAFLA 116
>pdb|155C|A Chain A, The Structure Of Paracoccus Denitrificans Cytochrome C550
Length = 135
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 26/114 (22%)
Query: 6 GKKIFTRACAQCH-------TANEGGANKVGPNLFGVVGRQTGQAPGFDYTD-----ANK 53
G+K F + C CH T +GG K GPNL+GVVGR+ GF Y + A K
Sbjct: 9 GEKEFNK-CKACHMIQAPDGTDIKGG--KTGPNLYGVVGRKIASEEGFKYGEGILEVAEK 65
Query: 54 NKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
N +TW+ + L Y+ +PK + TKM F + K++ D++A+L+
Sbjct: 66 NPDLTWTEANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLA 116
>pdb|1COT|A Chain A, X-Ray Structure Of The Cytochrome C2 Isolated From
Paracoccus Denitrificans Refined To 1.7 Angstroms
Resolution
Length = 129
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 23/113 (20%)
Query: 6 GKKIFTRACAQCHT--ANEG----GANKVGPNLFGVVGRQTGQAPGFDYTD-----ANKN 54
G+K F + C CH A +G K GPNL+GVVGR+ GF Y + A KN
Sbjct: 8 GEKEFNK-CKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKN 66
Query: 55 KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
+TW+ + L Y+ +PK ++ TKM F + K++ D++A+L+
Sbjct: 67 PDLTWTEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLA 116
>pdb|2BH4|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550
From Paracoccus Versutus Determined At 100 K.
pdb|2BH5|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550
From Paracoccus Versutus Determined At 295 K
Length = 134
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 27/115 (23%)
Query: 6 GKKIFTRACAQCHTAN--------EGGANKVGPNLFGVVGRQTGQAPGFDYTD-----AN 52
G+K F + C CH +GG K GPNL+GVVGR+ GF Y D A
Sbjct: 8 GEKEFNK-CKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGILEVAE 64
Query: 53 KNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
KN + WS + L Y+ +PK ++ TK F + K++ D++A+L+
Sbjct: 65 KNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKKTF---KLGKNQADVVAFLA 116
>pdb|2CXB|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|2CXB|B Chain B, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|1L9B|C Chain C, X-ray Structure Of The Cytochrome-c(2)-photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type Ii Co- Crystals
pdb|1L9J|C Chain C, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1L9J|D Chain D, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1CXA|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|1CXC|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
Length = 124
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 4 ENGKKIFTRACAQCH-------TANEGGANKVGPNLFGVVGRQTGQAPGFD-YTDANKN- 54
E G K F + C CH T G K GPNL+GVVGR G F Y + K
Sbjct: 6 EAGAKAFNQ-CQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEA 64
Query: 55 --KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
KG+ W Y+Q+P K++ KM F L+KE D ++ AYL +
Sbjct: 65 GAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQV 120
>pdb|1VYD|A Chain A, Crystal Structure Of Cytochrome C2 Mutant G95e
pdb|1VYD|B Chain B, Crystal Structure Of Cytochrome C2 Mutant G95e
Length = 116
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 23/115 (20%)
Query: 5 NGKKIFTRACAQCHT--ANEG-----GANKVGPNLFGVVGRQTGQAPGFDYTD---ANKN 54
G+K F + C CH+ A +G GA K GPNL+GVVGR G P F Y D A
Sbjct: 5 KGEKEFNK-CKTCHSIIAPDGTEIVKGA-KTGPNLYGVVGRTAGTYPEFKYKDSIVALGA 62
Query: 55 KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
G W+ + Y+++P ++ T+M F + K ED+ AYL+++
Sbjct: 63 SGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAF---KLAKGGEDVAAYLASV 114
>pdb|1C2N|A Chain A, Cytochrome C2, Nmr, 20 Structures
Length = 137
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 5 NGKKIFTRACAQCHT--ANEGG----ANKVGPNLFGVVGRQTGQAPGFDYTD---ANKNK 55
G+K F + C CH+ A +G K GPNL+GVVGR G P F Y D A
Sbjct: 26 KGEKEFNK-CKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGAS 84
Query: 56 GITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
G W+ + Y+++P ++ T M F + K ED+ AYL+++
Sbjct: 85 GFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAF---KLAKGGEDVAAYLASV 135
>pdb|1C2R|A Chain A, Molecular Structure Of Cytochrome C2 Isolated From
Rhodobacter Capsulatus Determined At 2.5 Angstroms
Resolution
pdb|1C2R|B Chain B, Molecular Structure Of Cytochrome C2 Isolated From
Rhodobacter Capsulatus Determined At 2.5 Angstroms
Resolution
Length = 116
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 23/115 (20%)
Query: 5 NGKKIFTRACAQCHT--ANEG-----GANKVGPNLFGVVGRQTGQAPGFDYTD---ANKN 54
G+K F + C CH+ A +G GA K GPNL+GVVGR G P F Y D A
Sbjct: 5 KGEKEFNK-CKTCHSIIAPDGTEIVKGA-KTGPNLYGVVGRTAGTYPEFKYKDSIVALGA 62
Query: 55 KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
G W+ + Y+++P ++ T M F + K ED+ AYL+++
Sbjct: 63 SGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAF---KLAKGGEDVAAYLASV 114
>pdb|2YEV|B Chain B, Structure Of Caa3-Type Cytochrome Oxidase
pdb|2YEV|E Chain E, Structure Of Caa3-Type Cytochrome Oxidase
Length = 337
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 4 ENGKKIFTRACAQCH-TANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
E G+++F + CA CH A +GP L G+ G +T G + +
Sbjct: 237 ERGQQVFQQNCAACHGVARSMPPAVIGPEL-GLWGNRTSLGAGI----------VENTPE 285
Query: 63 TLDIYLQNPKKYIPGTKMV-FPGLRKEKDREDLIAYLSTL 101
L ++++P PG KM FP L E+D + L+ YL L
Sbjct: 286 NLKAWIRDPAGMKPGVKMPGFPQL-SEEDLDALVRYLEGL 324
>pdb|2L4D|A Chain A, Cytochrome C Domain Of Pp3183 Protein From Pseudomonas
Putida
Length = 110
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 2 SVENGKKIFTRACAQCHTA--NEGGANKVGPNLFGV 35
S +G++IF C+ CHT E G +GP+L GV
Sbjct: 2 SFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGV 37
>pdb|1GDV|A Chain A, Crystal Structure Of Cytochrome C6 From Red Alga
Porphyra Yezoensis At 1.57 A Resolution
Length = 85
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
++NG+K+F+ CA CH GG N + P+ + + +A + DA IT+
Sbjct: 3 LDNGEKVFSANCAACHA---GGNNAIMPD--KTLKKDVLEANSMNTIDA-----ITYQ-- 50
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+QN K +P F G ++D ED Y+
Sbjct: 51 -----VQNGKNAMPA----FGGRLVDEDIEDAANYV 77
>pdb|1IZL|V Chain V, Crystal Structure Of Photosystem Ii
pdb|1IZL|0 Chain 0, Crystal Structure Of Photosystem Ii
pdb|1MZ4|A Chain A, Crystal Structure Of Cytochrome C550 From
Thermosynechococcus Elongatus
pdb|1S5L|V Chain V, Architecture Of The Photosynthetic Oxygen Evolving
Center
pdb|1S5L|VV Chain v, Architecture Of The Photosynthetic Oxygen Evolving
Center
pdb|2AXT|V Chain V, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|VV Chain v, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|V Chain V, Crystal Structure Of Cyanobacterial Photosystem Ii (Part
1 Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|V Chain V, Crystal Structure Of Cyanobacterial Photosystem Ii (Part
2 Of 2). This File Contains Second Monomer Of Psii
Dimer
pdb|3A0B|V Chain V, Crystal Structure Of Br-Substituted Photosystem Ii
Complex
pdb|3A0B|VV Chain v, Crystal Structure Of Br-Substituted Photosystem Ii
Complex
pdb|3A0H|V Chain V, Crystal Structure Of I-Substituted Photosystem Ii
Complex
pdb|3A0H|VV Chain v, Crystal Structure Of I-Substituted Photosystem Ii
Complex
pdb|3KZI|V Chain V, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|V Chain V, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File
Contains First Monomer Of Psii Dimer
pdb|3PRR|V Chain V, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File
Contains Second Monomer Of Psii Dimer
pdb|3ARC|V Chain V, Crystal Structure Of Oxygen-Evolving Photosystem Ii At
1.9 Angstrom Resolution
pdb|3ARC|VV Chain v, Crystal Structure Of Oxygen-Evolving Photosystem Ii At
1.9 Angstrom Resolution
pdb|4FBY|V Chain V, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|II Chain i, Fs X-Ray Diffraction Of Photosystem Ii
Length = 137
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNL 32
GK++F ACA CH GG K P+L
Sbjct: 28 EGKRLFQYACASCHV---GGITKTNPSL 52
>pdb|1W5C|T Chain T, Photosystem Ii From Thermosynechococcus Elongatus
pdb|1W5C|V Chain V, Photosystem Ii From Thermosynechococcus Elongatus
pdb|4IXQ|V Chain V, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|VV Chain v, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|V Chain V, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|VV Chain v, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 163
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNL 32
GK++F ACA CH GG K P+L
Sbjct: 54 EGKRLFQYACASCHV---GGITKTNPSL 78
>pdb|1E29|A Chain A, Psii Associated Cytochrome C549 From Synechocystis Sp
Length = 135
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
NG+KIF C QCH G K N+ + G P D + L
Sbjct: 28 NGQKIFVDTCTQCHLQ---GKTKTNNNVSLGLADLAGAEPRRD------------NVLAL 72
Query: 65 DIYLQNPKKY 74
+L+NPK Y
Sbjct: 73 VEFLKNPKSY 82
>pdb|2ZBO|A Chain A, Crystal Structure Of Low-Redox-Potential Cytochrom C6
From Brown Alga Hizikia Fusiformis At 1.6 A Resolution
pdb|2ZBO|C Chain C, Crystal Structure Of Low-Redox-Potential Cytochrom C6
From Brown Alga Hizikia Fusiformis At 1.6 A Resolution
pdb|2ZBO|E Chain E, Crystal Structure Of Low-Redox-Potential Cytochrom C6
From Brown Alga Hizikia Fusiformis At 1.6 A Resolution
pdb|2ZBO|G Chain G, Crystal Structure Of Low-Redox-Potential Cytochrom C6
From Brown Alga Hizikia Fusiformis At 1.6 A Resolution
pdb|2ZBO|I Chain I, Crystal Structure Of Low-Redox-Potential Cytochrom C6
From Brown Alga Hizikia Fusiformis At 1.6 A Resolution
pdb|2ZBO|K Chain K, Crystal Structure Of Low-Redox-Potential Cytochrom C6
From Brown Alga Hizikia Fusiformis At 1.6 A Resolution
Length = 86
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+ +G+ +FT C+ CH GG N + P +T Q N IT+ +
Sbjct: 3 INHGENVFTANCSACHA---GGNNVIMP-------EKTLQKDALSTNQMNSVGAITYQVT 52
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
N K +P F G + D ED+ +++
Sbjct: 53 -------NGKNAMPA----FGGRLSDDDIEDVASFV 77
>pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549
pdb|1F1C|B Chain B, Crystal Structure Of Cytochrome C549
Length = 129
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNL 32
++ G+++F ACAQCH G + P++
Sbjct: 24 IKKGQQVFNAACAQCHAL---GVTRTNPDV 50
>pdb|2CE0|A Chain A, Structure Of Oxidized Arabidopsis Thaliana Cytochrome 6a
pdb|2CE1|A Chain A, Structure Of Reduced Arabidopsis Thaliana Cytochrome 6a
Length = 105
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 1 MSVENGKKIFTRACAQCHTANEGGANKVGP 30
+ ++ G +F RACA CH + G N + P
Sbjct: 3 LDIQRGATLFNRACAACH---DTGGNIIQP 29
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
VE+G + F R + A+ G + ++ G+ T PGFD D K G +
Sbjct: 150 VEDGYE-FRREFEKLGGADNWGKVFMVKDMDGL--NMTMPKPGFDLEDVVKIMGSDYEVD 206
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
T+D+Y N Y R K+R L +LS
Sbjct: 207 TIDVY--NQSTYSMKLDTFRKLFRDTKNRPLLYNFLS 241
>pdb|1C6S|A Chain A, The Solution Structure Of Cytochrome C6 From The
Thermophilic Cyanobacterium Synechococcus Elongatus,
Nmr, 20 Structures
Length = 87
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPN 31
+ NG K+F+ CA CH GG N V N
Sbjct: 3 LANGAKVFSGNCAACHM---GGGNVVMAN 28
>pdb|1LS9|A Chain A, Structure Of The Cytochrome C6 From The Green Alga
Cladophora Glomerata
Length = 91
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 5 NGKKIFTRACAQCHTANEGGANKV 28
+GKK+F CA CH GG N V
Sbjct: 8 DGKKVFAGNCAACHL---GGNNSV 28
>pdb|2V07|A Chain A, Structure Of The Arabidopsis Thaliana Cytochrome C6a
V52q Variant
Length = 105
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1 MSVENGKKIFTRACAQCHTANEGGANKVGP 30
+ ++ G +F RAC CH + G N + P
Sbjct: 3 LDIQRGATLFNRACIACH---DTGGNIIQP 29
>pdb|2FWL|A Chain A, The Cytochrome C552CUA COMPLEX FROM THERMUS THERMOPHILUS
Length = 133
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDY 48
M+ +G KI+ + CA CH N G P L G V + G +Y
Sbjct: 1 MAQADGAKIYAQ-CAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREY 47
>pdb|1CED|A Chain A, The Structure Of Cytochrome C6 From Monoraphidium
Braunii, Nmr, Minimized Average Structure
pdb|1CTJ|A Chain A, Crystal Structure Of Cytochrome C6
Length = 89
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPN 31
GK +F CA CH GG N V P+
Sbjct: 7 GKAVFDGNCAACHA---GGGNNVIPD 29
>pdb|1A2S|A Chain A, The Solution Nmr Structure Of Oxidized Cytochrome C6
From The Green Alga Monoraphidium Braunii, Minimized
Average Structure
Length = 89
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 6 GKKIFTRACAQCHTANEGGANKVGPN 31
GK +F CA CH GG N V P+
Sbjct: 7 GKAVFDGNCAACHA---GGGNNVIPD 29
>pdb|2DGE|A Chain A, Crystal Structure Of Oxidized Cytochrome C6a From
Arabidopsis Thaliana
pdb|2DGE|B Chain B, Crystal Structure Of Oxidized Cytochrome C6a From
Arabidopsis Thaliana
pdb|2DGE|C Chain C, Crystal Structure Of Oxidized Cytochrome C6a From
Arabidopsis Thaliana
pdb|2DGE|D Chain D, Crystal Structure Of Oxidized Cytochrome C6a From
Arabidopsis Thaliana
Length = 105
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1 MSVENGKKIFTRACAQCHTANEGGANKVGP 30
+ ++ G +F RAC CH + G N + P
Sbjct: 3 LDIQRGATLFNRACIGCH---DTGGNIIQP 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,448,943
Number of Sequences: 62578
Number of extensions: 142568
Number of successful extensions: 424
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 98
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)