Query psy14949
Match_columns 102
No_of_seqs 121 out of 1155
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 16:34:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ccr_A Cytochrome C; electron 100.0 8.6E-29 2.9E-33 145.5 9.6 102 1-102 10-111 (112)
2 1i54_A Cytochrome C; zinc-porp 100.0 1.8E-28 6.1E-33 142.1 10.0 102 1-102 1-102 (103)
3 2w9k_A Cytochrome C, cytochrom 100.0 2.1E-28 7.3E-33 144.3 10.3 102 1-102 12-113 (114)
4 3m97_X Cytochrome C-552, cytoc 100.0 1.1E-28 3.8E-33 150.3 9.0 99 1-102 42-140 (140)
5 1ycc_A Cytochrome C; electron 100.0 2.2E-28 7.6E-33 142.9 9.7 102 1-102 6-107 (108)
6 1co6_A Protein (cytochrome C2) 100.0 3.3E-28 1.1E-32 142.1 9.7 101 1-102 1-101 (107)
7 1hro_A Cytochrome C2; electron 100.0 4.8E-28 1.6E-32 141.1 8.8 101 1-102 6-106 (106)
8 1cxc_A Cytochrome C2; electron 99.9 7.2E-28 2.5E-32 144.3 6.4 100 1-102 3-121 (124)
9 3c2c_A Cytochrome C2; electron 99.9 1.7E-27 5.8E-32 140.1 7.1 100 1-102 2-112 (112)
10 1qn2_A Cytochrome CH; electron 99.9 4E-27 1.4E-31 136.0 8.4 98 1-102 2-100 (100)
11 1vyd_A Cytochrome C2; electron 99.9 9.7E-28 3.3E-32 142.3 5.2 98 1-102 1-115 (116)
12 2bh4_X Cytochrome C-550; C-typ 99.9 8.3E-28 2.8E-32 145.8 4.5 98 1-102 3-119 (134)
13 155c_A Cytochrome C550; electr 99.9 7.1E-27 2.4E-31 141.8 6.7 98 1-102 4-119 (135)
14 1jdl_A C552, cytochrome C2, IS 99.9 5E-26 1.7E-30 135.3 7.2 100 1-102 3-119 (121)
15 1c2n_A Cytochrome C2; electron 99.9 3.7E-26 1.3E-30 138.9 6.4 98 1-102 22-136 (137)
16 1i8o_A Cytochrome C2; electron 99.9 3.5E-25 1.2E-29 130.7 7.1 97 1-102 1-114 (114)
17 1w2l_A Cytochrome oxidase subu 99.8 7E-21 2.4E-25 109.0 8.3 91 1-102 4-99 (99)
18 2l4d_A SCO1/SENC family protei 99.8 5.1E-21 1.8E-25 111.4 3.4 80 1-101 1-96 (110)
19 2c1d_B SOXX; sulfur oxidation, 99.8 1.1E-19 3.9E-24 109.9 6.4 82 1-102 24-136 (137)
20 1cno_A Cytochrome C552; electr 99.8 3E-20 1E-24 104.4 3.2 81 1-102 2-83 (87)
21 1h32_B Cytochrome C, SOXX; ele 99.8 1E-19 3.5E-24 110.2 5.7 82 1-102 25-137 (138)
22 1c75_A Cytochrome C-553; heme, 99.8 9.6E-19 3.3E-23 94.8 6.6 71 4-102 1-71 (71)
23 3cu4_A Cytochrome C family pro 99.8 4.1E-19 1.4E-23 99.2 4.4 81 1-102 3-84 (85)
24 1c53_A Cytochrome C553; electr 99.8 4.8E-19 1.6E-23 97.9 4.6 77 4-101 1-79 (79)
25 1cch_A Cytochrome C551; electr 99.8 5.3E-19 1.8E-23 98.0 4.4 79 5-102 2-82 (82)
26 3o0r_C Nitric oxide reductase 99.8 1.3E-18 4.5E-23 106.0 6.2 83 2-101 48-132 (146)
27 2exv_A Cytochrome C-551; alpha 99.8 9.2E-19 3.2E-23 97.0 4.8 80 4-102 1-82 (82)
28 1wve_C 4-cresol dehydrogenase 99.8 2.9E-18 9.9E-23 95.0 6.7 72 1-102 2-74 (80)
29 3ph2_B Cytochrome C6; photosyn 99.7 1.7E-18 6E-23 96.5 5.7 80 1-101 2-81 (86)
30 1e29_A Cytochrome C549; electr 99.7 5E-19 1.7E-23 107.1 3.4 85 2-101 25-122 (135)
31 2zzs_A Cytochrome C554; C-type 99.7 4.1E-19 1.4E-23 102.5 2.9 81 1-102 22-103 (103)
32 3dmi_A Cytochrome C6; electron 99.7 2.1E-18 7.1E-23 96.6 5.0 82 1-101 1-82 (88)
33 1gdv_A Cytochrome C6; RED ALGA 99.7 1E-18 3.5E-23 97.3 3.5 79 1-101 1-80 (85)
34 1f1c_A Cytochrome C549; dimeri 99.7 6.6E-18 2.3E-22 100.8 6.6 85 2-101 23-120 (129)
35 2ce0_A Cytochrome C6; chloropl 99.7 1.9E-17 6.4E-22 95.5 8.2 84 1-101 3-94 (105)
36 1f1f_A Cytochrome C6; heme, pr 99.7 1.3E-17 4.5E-22 93.5 7.1 84 1-101 1-84 (89)
37 3cp5_A Cytochrome C; electron 99.7 1.2E-18 4.2E-23 103.4 2.7 76 2-101 33-120 (124)
38 2gc4_D Cytochrome C-L; electro 99.7 2.9E-17 9.9E-22 100.4 8.6 80 2-102 45-124 (147)
39 3dr0_A Cytochrome C6; photosyn 99.7 7.8E-18 2.7E-22 94.9 5.4 86 1-101 1-87 (93)
40 2d0s_A Cytochrome C, cytochrom 99.7 7.2E-18 2.5E-22 93.0 4.9 77 6-102 1-79 (79)
41 3oa8_B SOXX; cytochrome, sulfu 99.7 2.7E-17 9.3E-22 105.6 8.0 84 1-102 96-203 (208)
42 1cyi_A Cytochrome C6, cytochro 99.7 2.1E-17 7E-22 93.0 5.6 80 1-101 1-82 (90)
43 2c8s_A Cytochrome C-L; HAEM, h 99.7 9.5E-17 3.2E-21 100.6 9.1 79 2-102 53-132 (172)
44 1a56_A C-551, ferricytochrome 99.7 5.1E-18 1.8E-22 94.0 2.7 79 6-102 1-81 (81)
45 1c6r_A Cytochrome C6; electron 99.7 3.2E-17 1.1E-21 92.0 5.7 80 1-101 2-83 (89)
46 1ayg_A Cytochrome C-552; elect 99.7 1.1E-17 3.8E-22 92.5 3.2 76 8-102 3-80 (80)
47 2zxy_A Cytochrome C552, cytoch 99.7 2.3E-17 7.7E-22 92.0 4.0 78 4-102 1-87 (87)
48 1ls9_A Cytochrome C6; omega lo 99.7 1.1E-16 3.8E-21 90.2 6.6 80 2-101 5-85 (91)
49 3dp5_A OMCF, cytochrome C fami 99.7 5.4E-17 1.8E-21 93.3 5.1 80 2-102 18-98 (99)
50 2d0w_A Cytochrome CL; electron 99.7 2.1E-16 7.2E-21 98.8 8.2 79 2-102 47-126 (170)
51 2zon_G Cytochrome C551; nitrit 99.7 1.3E-17 4.4E-22 93.4 2.3 78 1-102 7-86 (87)
52 1kx2_A Mono-heme C-type cytoch 99.6 7.7E-17 2.6E-21 89.4 3.2 78 2-102 2-81 (81)
53 1c52_A Cytochrome-C552; electr 99.6 5.5E-17 1.9E-21 97.5 2.6 82 4-102 2-91 (131)
54 1w5c_T Cytochrome C-550; photo 99.6 4.5E-16 1.5E-20 96.5 4.4 83 2-101 51-148 (163)
55 2yev_B Cytochrome C oxidase su 99.4 5.1E-17 1.7E-21 111.1 0.0 87 4-102 237-325 (337)
56 1m70_A Cytochrome C4; electron 99.6 4.7E-16 1.6E-20 98.0 4.3 81 2-102 99-190 (190)
57 3mk7_C Cytochrome C oxidase, C 99.6 1.7E-15 5.9E-20 102.5 6.9 80 2-102 221-302 (311)
58 1cc5_A Cytochrome C5; electron 99.6 3.7E-16 1.3E-20 87.2 2.8 79 2-101 3-83 (83)
59 1gks_A Cytochrome C551; haloph 99.6 7.2E-16 2.5E-20 84.9 3.9 73 5-101 1-77 (78)
60 1mz4_A Cytochrome C550; PSII a 99.6 1.2E-15 4.1E-20 92.1 5.2 83 2-101 25-122 (137)
61 1kb0_A Quinohemoprotein alcoho 99.6 1.3E-15 4.4E-20 111.7 4.6 78 2-101 592-669 (677)
62 1h1o_A Cytochrome C-552; elect 99.6 1.5E-15 5.1E-20 95.2 3.2 76 2-101 99-183 (183)
63 2xts_B Cytochrome; oxidoreduct 99.6 6.9E-15 2.4E-19 94.5 6.3 86 2-102 34-121 (205)
64 2zoo_A Probable nitrite reduct 99.5 7E-15 2.4E-19 103.3 3.4 81 2-102 338-425 (442)
65 1yiq_A Quinohemoprotein alcoho 99.5 2.1E-14 7E-19 105.5 5.8 75 2-101 594-669 (689)
66 1kv9_A Type II quinohemoprotei 99.5 2E-14 6.9E-19 105.2 5.2 77 2-101 579-655 (668)
67 3mk7_B Cytochrome C oxidase, C 99.5 5.8E-14 2E-18 89.0 5.3 58 4-81 54-138 (203)
68 1nir_A Nitrite reductase; hemo 99.5 4.3E-14 1.5E-18 101.3 4.9 75 2-102 35-113 (543)
69 3vrd_A FCCA subunit, flavocyto 99.5 6.3E-15 2.2E-19 92.3 0.4 81 2-102 89-174 (174)
70 3mk7_C Cytochrome C oxidase, C 99.5 5.3E-14 1.8E-18 95.2 4.5 77 3-101 132-209 (311)
71 1qks_A Cytochrome CD1 nitrite 99.4 8.9E-14 3E-18 100.5 5.5 75 3-102 54-131 (567)
72 1h1o_A Cytochrome C-552; elect 99.4 2.8E-14 9.7E-19 89.3 1.3 81 1-102 4-87 (183)
73 1m70_A Cytochrome C4; electron 99.4 1.8E-13 6.3E-18 86.0 4.9 80 1-101 2-88 (190)
74 3vrd_A FCCA subunit, flavocyto 99.4 1.7E-13 5.7E-18 85.8 4.0 70 8-101 5-76 (174)
75 1zzh_A Cytochrome C peroxidase 99.1 5.1E-10 1.8E-14 76.3 7.7 91 3-102 188-303 (328)
76 1nml_A DI-HAEM cytochrome C pe 99.0 1.3E-09 4.4E-14 74.2 7.1 43 51-102 258-300 (326)
77 2vhd_A Cytochrome C551 peroxid 99.0 5.4E-10 1.8E-14 76.0 4.8 42 52-102 259-300 (323)
78 2c1v_A DI-HAEM cytochrome C pe 99.0 8.1E-10 2.8E-14 75.6 5.4 91 3-102 199-314 (338)
79 3o5c_A Cytochrome C551 peroxid 98.9 4.3E-10 1.5E-14 76.4 3.5 43 51-102 249-291 (320)
80 1iqc_A DI-heme peroxidase; pro 98.9 2.1E-09 7.1E-14 72.7 5.8 40 54-102 244-283 (308)
81 3oa8_A SOXA; cytochrome, sulfu 98.9 2.2E-10 7.4E-15 76.4 1.0 82 3-102 53-147 (275)
82 4aan_A Cytochrome C551 peroxid 98.9 2.2E-09 7.6E-14 73.4 5.5 51 42-101 266-316 (341)
83 3a9f_A Cytochrome C; alpha hel 98.8 1.7E-10 6E-15 65.2 -0.9 20 2-21 26-45 (92)
84 3hq9_A Cytochrome C551 peroxid 98.8 3.8E-09 1.3E-13 72.3 5.5 40 54-102 283-322 (345)
85 2c1d_A SOXA; sulfur oxidation, 98.8 5.3E-10 1.8E-14 74.1 0.0 21 82-102 232-252 (264)
86 2blf_B SORB, sulfite\:cytochro 98.8 3.7E-09 1.3E-13 58.4 3.5 18 4-21 19-36 (81)
87 1h32_A SOXA, diheme cytochrome 98.8 2.6E-09 8.8E-14 70.7 3.2 83 3-102 159-249 (261)
88 1jmx_A Amine dehydrogenase; ox 98.7 4.3E-09 1.5E-13 74.2 2.5 21 4-24 2-22 (494)
89 1e8e_A Cytochrome C''; oxidore 98.7 6.7E-09 2.3E-13 61.2 1.7 18 85-102 103-120 (124)
90 3cx5_D Cytochrome C1, heme pro 98.6 5.8E-08 2E-12 63.5 5.8 20 2-21 28-47 (248)
91 3oa8_A SOXA; cytochrome, sulfu 98.6 3.1E-09 1.1E-13 70.9 -0.8 32 3-34 165-204 (275)
92 3sjl_A Methylamine utilization 98.6 3.5E-07 1.2E-11 63.2 8.8 17 85-101 333-349 (373)
93 1dw0_A Cytochrome C; asparagin 98.6 7E-08 2.4E-12 56.1 4.5 81 2-101 21-112 (112)
94 1pp9_D Cytochrome C-1, cytochr 98.6 7E-07 2.4E-11 58.3 9.2 21 2-22 25-45 (241)
95 2yiu_B Cytochrome C1, heme pro 98.5 2.6E-07 8.9E-12 60.9 6.5 21 2-22 46-66 (263)
96 2c1d_A SOXA; sulfur oxidation, 98.4 3.4E-08 1.2E-12 65.4 0.4 17 85-101 128-144 (264)
97 1pby_A Quinohemoprotein amine 98.3 6.5E-07 2.2E-11 63.1 5.4 19 5-23 2-20 (489)
98 1h32_A SOXA, diheme cytochrome 98.2 2.3E-07 7.9E-12 61.3 0.9 17 85-101 125-141 (261)
99 2qjy_B Cytochrome C1; cytochro 98.2 4.7E-06 1.6E-10 55.1 6.5 20 2-21 24-43 (269)
100 1zrt_D Cytochrome C1; cytochro 97.6 3.1E-05 1.1E-09 51.0 2.2 20 2-21 22-41 (258)
101 2c1v_A DI-HAEM cytochrome C pe 97.5 2E-05 7E-10 53.9 1.0 14 88-101 164-177 (338)
102 2vhd_A Cytochrome C551 peroxid 97.4 2.8E-05 9.4E-10 52.9 0.7 19 3-21 31-58 (323)
103 1zzh_A Cytochrome C peroxidase 97.4 0.00066 2.2E-08 46.2 7.2 14 88-101 153-166 (328)
104 1iqc_A DI-heme peroxidase; pro 97.4 2.1E-05 7.3E-10 53.1 -0.3 15 87-101 135-149 (308)
105 3hq9_A Cytochrome C551 peroxid 97.3 0.0001 3.5E-09 50.5 2.2 19 3-21 53-80 (345)
106 1jmx_A Amine dehydrogenase; ox 97.0 4.9E-05 1.7E-09 53.9 -1.7 22 2-23 88-109 (494)
107 3o5c_A Cytochrome C551 peroxid 96.9 0.0042 1.4E-07 42.2 7.2 19 3-21 27-54 (320)
108 2fw5_A DHC, diheme cytochrome 96.7 0.0031 1.1E-07 37.9 4.5 16 6-21 16-31 (139)
109 2fwt_A DHC, diheme cytochrome 96.6 0.007 2.4E-07 35.7 5.7 16 6-21 5-20 (125)
110 1nml_A DI-HAEM cytochrome C pe 96.4 0.00067 2.3E-08 46.1 0.7 19 3-21 31-58 (326)
111 4aan_A Cytochrome C551 peroxid 95.8 0.0016 5.5E-08 44.6 0.1 19 3-21 48-75 (341)
112 3u99_A Diheme cytochrome C; cy 95.5 0.062 2.1E-06 32.5 6.2 12 8-19 13-24 (148)
113 1pby_A Quinohemoprotein amine 93.3 0.011 3.8E-07 42.0 -0.7 19 3-21 89-107 (489)
114 3sjl_A Methylamine utilization 89.0 0.08 2.7E-06 36.7 0.1 19 3-21 11-38 (373)
115 3ayf_A Nitric oxide reductase; 88.2 0.24 8.3E-06 37.5 2.2 33 2-35 68-101 (800)
116 2gc4_D Cytochrome C-L; electro 86.5 0.2 6.9E-06 29.6 0.8 25 77-101 10-35 (147)
117 3b42_A GSU0935, methyl-accepti 81.4 0.52 1.8E-05 27.6 1.1 9 12-20 104-112 (135)
118 3b47_A GSU0582, methyl-accepti 79.3 0.58 2E-05 27.5 0.8 9 12-20 103-111 (134)
119 1ogy_B Diheme cytochrome C NAP 71.8 3.7 0.00013 24.2 2.9 9 13-21 57-65 (130)
120 3oao_A Uncharacterized protein 66.3 3.8 0.00013 24.6 2.2 19 82-100 76-94 (147)
121 3h34_A Cytochrome C7, cytochro 66.2 1.5 5E-05 22.9 0.3 15 7-21 43-57 (70)
122 1ehj_A Cytochrome C7; multi-he 64.1 1.7 5.9E-05 22.4 0.4 15 7-21 41-56 (68)
123 2czs_A DHC2, cytochrome C, put 62.7 7.7 0.00026 20.6 2.7 9 11-19 34-42 (80)
124 3h4n_A Cytochrome C7, cytochro 59.5 2.3 7.8E-05 22.2 0.3 14 7-20 45-58 (72)
125 1wdd_S Ribulose bisphosphate c 57.4 22 0.00075 20.8 4.3 23 79-101 14-36 (128)
126 3ml1_B NAPB, diheme cytochrome 57.3 4.8 0.00016 23.8 1.5 10 13-22 98-107 (135)
127 1oqe_K Tumor necrosis factor r 55.6 2.1 7.2E-05 18.5 -0.2 10 12-21 15-24 (31)
128 4g1a_A AQ-C16C19 peptide; heli 54.1 9.9 0.00034 16.0 1.8 11 9-19 11-21 (32)
129 1m0f_B GPB, scaffolding protei 53.2 7.3 0.00025 19.9 1.5 18 2-19 14-33 (68)
130 1rwj_A Cytochrome C family pro 50.4 7.3 0.00025 20.8 1.4 8 12-19 58-65 (82)
131 1al0_B Scaffolding protein GPB 49.6 4 0.00014 23.2 0.2 18 2-19 66-85 (120)
132 1gk8_I Ribulose bisphosphate c 49.5 35 0.0012 20.3 4.3 23 79-101 14-36 (140)
133 2lky_A Uncharacterized protein 49.4 13 0.00044 21.3 2.3 17 84-100 39-55 (112)
134 2kvc_A Putative uncharacterize 49.2 13 0.00044 21.0 2.3 17 84-100 37-53 (103)
135 2es6_A VTS1P; SAM domain, prot 48.9 10 0.00034 21.3 1.8 26 77-102 17-42 (101)
136 2j7a_C Cytochrome C quinol deh 48.7 4.5 0.00015 24.2 0.4 14 8-21 110-123 (159)
137 1rbl_M Ribulose 1,5 bisphospha 47.5 28 0.00096 19.7 3.6 23 79-101 13-35 (109)
138 1ci3_M Protein (cytochrome F); 46.9 4.8 0.00016 26.0 0.3 9 13-21 20-28 (249)
139 1hcz_A Cytochrome F; electron 46.7 4.8 0.00016 26.1 0.3 9 13-21 20-28 (252)
140 1e2w_A Cytochrome F; electron 46.6 4.8 0.00017 26.0 0.3 9 13-21 20-28 (251)
141 3cao_A Cytochrome C3; tetrahem 45.4 5.2 0.00018 22.2 0.3 14 8-21 76-89 (103)
142 3bxu_A Cytochrome C3; multihem 45.1 5.6 0.00019 20.5 0.4 14 7-20 43-57 (71)
143 1svd_M Ribulose bisphosphate c 44.5 27 0.00093 19.8 3.2 23 79-101 15-37 (110)
144 3zxw_B Ribulose bisphosphate c 44.5 21 0.0007 20.6 2.7 22 80-101 13-34 (118)
145 2k3v_A Tetraheme cytochrome C- 43.8 7.5 0.00026 20.7 0.8 11 11-21 32-42 (86)
146 3h33_A Cytochrome C7, cytochro 43.8 3.3 0.00011 21.9 -0.7 15 7-21 43-58 (75)
147 1vf5_C Cytochrome F; photosynt 43.1 5.9 0.0002 26.1 0.3 9 13-21 21-29 (289)
148 2je2_A Cytochrome P460; heme P 42.9 4.1 0.00014 25.4 -0.4 9 12-20 135-143 (186)
149 3r1f_A ESX-1 secretion-associa 40.0 20 0.00067 20.8 2.3 17 86-102 112-128 (135)
150 1jni_A NAPB;, diheme cytochrom 39.8 8.2 0.00028 22.5 0.5 6 14-19 97-102 (123)
151 2jxm_B Cytochrome F; copper, e 39.1 4.8 0.00016 26.0 -0.6 8 14-21 21-28 (249)
152 3ol3_A Putative uncharacterize 36.0 28 0.00095 19.7 2.3 17 84-100 42-58 (107)
153 4fs3_A Enoyl-[acyl-carrier-pro 35.5 30 0.001 21.9 2.8 16 85-100 220-235 (256)
154 1xv3_A Penaeidin-4D, PEN-4D; a 35.2 12 0.00042 17.8 0.6 8 14-21 23-30 (47)
155 1h21_A Split-soret cytochrome 34.7 12 0.00042 24.3 0.8 9 12-20 207-216 (247)
156 2hfg_R Tumor necrosis factor r 34.5 6.4 0.00022 18.9 -0.4 10 12-21 27-36 (51)
157 1p0t_A Tumor necrosis factor r 33.8 7.8 0.00027 19.5 -0.2 10 12-21 30-39 (63)
158 2bq4_A Cytochrome C3, basic cy 33.8 4.6 0.00016 23.1 -1.2 8 13-20 89-96 (116)
159 2b6g_A VTS1P; alpha-helix, pen 33.4 6.1 0.00021 22.9 -0.7 27 76-102 34-60 (119)
160 2ozy_A Cytochrome C-type prote 33.3 16 0.00054 21.7 1.1 9 11-19 85-93 (163)
161 3r8n_M 30S ribosomal protein S 33.2 35 0.0012 19.4 2.5 17 84-100 45-61 (114)
162 3g27_A 82 prophage-derived unc 32.5 7.4 0.00025 21.7 -0.4 9 13-21 53-61 (96)
163 3j20_O 30S ribosomal protein S 32.4 30 0.001 20.7 2.2 17 84-100 52-68 (148)
164 2cy3_A Cytochrome C3; electron 31.7 4.2 0.00014 23.4 -1.6 9 13-21 91-99 (118)
165 2npt_A Dual specificity mitoge 31.7 31 0.0011 19.1 2.0 14 86-99 71-84 (106)
166 1q90_A Apocytochrome F; membra 31.4 7.6 0.00026 25.7 -0.6 8 14-21 21-28 (292)
167 4fgs_A Probable dehydrogenase 31.0 35 0.0012 22.3 2.6 16 85-100 238-253 (273)
168 2m0n_A Putative uncharacterize 30.7 70 0.0024 18.2 3.4 15 86-100 83-97 (112)
169 1m1q_A Small tetraheme cytochr 30.6 12 0.00043 19.9 0.3 9 13-21 14-22 (91)
170 1b0n_A Protein (SINR protein); 30.2 33 0.0011 18.3 2.1 17 85-101 89-105 (111)
171 3ubr_A Cytochrome C-552; DECA- 29.9 13 0.00043 26.4 0.3 8 13-20 167-174 (439)
172 4b79_A PA4098, probable short- 29.5 38 0.0013 21.7 2.5 16 85-100 207-222 (242)
173 3go5_A Multidomain protein wit 29.3 51 0.0017 21.7 3.1 31 60-95 225-255 (285)
174 4h15_A Short chain alcohol deh 29.2 39 0.0013 21.7 2.6 18 83-100 223-240 (261)
175 3pgb_A Putative uncharacterize 29.1 42 0.0014 25.7 2.9 19 82-101 68-86 (797)
176 3iz6_M 40S ribosomal protein S 28.5 43 0.0015 20.1 2.4 17 84-100 57-73 (152)
177 2xzm_M RPS18E; ribosome, trans 28.0 44 0.0015 20.1 2.4 17 84-100 59-75 (155)
178 1d4d_A Flavocytochrome C fumar 27.9 16 0.00055 26.2 0.6 9 13-21 15-23 (572)
179 1oah_A Cytochrome C nitrite re 27.9 18 0.00062 26.1 0.8 9 13-21 187-195 (519)
180 3u5c_S 40S ribosomal protein S 27.5 43 0.0015 20.0 2.3 17 84-100 59-75 (146)
181 1ft5_A Cytochrome C554; heme-s 27.3 18 0.00062 22.8 0.7 10 12-21 58-67 (211)
182 1sd4_A Penicillinase repressor 27.0 42 0.0015 18.4 2.2 16 86-101 108-123 (126)
183 3ged_A Short-chain dehydrogena 26.7 53 0.0018 21.0 2.8 17 84-100 198-214 (247)
184 3mab_A Uncharacterized protein 26.6 47 0.0016 18.1 2.2 18 85-102 69-86 (93)
185 1b4u_A LIGA, LIGB, protocatech 26.4 22 0.00075 21.1 0.9 31 60-96 46-76 (139)
186 2rdz_A Cytochrome C-552; decah 26.4 14 0.00049 26.1 0.0 9 13-21 182-190 (452)
187 3v2d_4 50S ribosomal protein L 26.2 17 0.00057 19.0 0.3 7 13-19 35-41 (71)
188 1qo8_A Flavocytochrome C3 fuma 26.2 18 0.00062 25.8 0.6 8 13-20 14-21 (566)
189 1gyo_A Cytochrome C3, A dimeri 25.8 18 0.00062 20.2 0.4 9 13-21 51-59 (109)
190 2vqe_M 30S ribosomal protein S 25.1 52 0.0018 19.1 2.3 17 84-100 46-62 (126)
191 1vs6_Z 50S ribosomal protein L 25.1 18 0.00061 18.8 0.3 8 12-19 35-42 (70)
192 1w7c_A Lysyl oxidase; AMNE oxi 24.9 54 0.0018 24.9 2.9 19 81-100 20-38 (747)
193 4hp8_A 2-deoxy-D-gluconate 3-d 24.8 39 0.0013 21.7 1.9 16 85-100 212-227 (247)
194 1y0p_A Fumarate reductase flav 24.3 20 0.0007 25.6 0.5 9 13-21 13-21 (571)
195 1nkw_Y 50S ribosomal protein L 23.8 19 0.00067 18.9 0.3 8 12-19 34-41 (73)
196 2l5b_A Activator of apoptosis 23.4 55 0.0019 13.8 2.2 13 88-100 15-27 (32)
197 3lqv_P Splicing factor 3B subu 22.3 36 0.0012 15.6 1.0 9 86-94 23-31 (39)
198 4fjo_A DNA repair protein REV1 22.2 55 0.0019 17.9 2.0 29 61-101 15-43 (97)
199 4fn4_A Short chain dehydrogena 21.6 70 0.0024 20.5 2.7 16 85-100 219-234 (254)
200 3vu7_H DNA repair protein REV1 21.3 57 0.0019 18.8 2.0 29 61-101 42-70 (124)
201 4dvc_A Thiol:disulfide interch 21.2 63 0.0022 18.7 2.3 18 85-102 167-184 (184)
202 1tu5_A Copper amine oxidase, l 20.9 71 0.0024 24.3 2.8 19 81-100 42-60 (746)
203 3n9z_C Adrenodoxin; cytochrome 20.8 25 0.00085 20.1 0.3 7 13-19 50-56 (123)
204 2b4n_A Gastric inhibitory poly 20.8 79 0.0027 14.7 2.2 19 82-100 10-28 (42)
205 3fbl_A Putative uncharacterize 20.5 36 0.0012 17.3 0.9 17 83-100 64-80 (82)
206 3pmq_A Decaheme cytochrome C M 20.4 30 0.001 25.9 0.8 10 12-21 493-502 (669)
207 1fex_A TRF2-interacting telome 20.2 88 0.003 15.3 2.3 15 86-100 5-19 (59)
208 2bt6_A Adrenodoxin 1; rutheniu 20.2 24 0.00083 19.3 0.2 7 13-19 51-57 (108)
209 2g9w_A Conserved hypothetical 20.0 64 0.0022 18.2 2.1 16 86-101 107-122 (138)
No 1
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=99.96 E-value=8.6e-29 Score=145.54 Aligned_cols=102 Identities=53% Similarity=0.981 Sum_probs=92.1
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+++++|+++|+++|++||++++.+....||+|.++..+..+..++|.|++.+...+..|+.++|.++|++|+...++++|
T Consensus 10 ~~~~~G~~lf~~~C~~CHg~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~m 89 (112)
T 1ccr_A 10 GNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPXKYIPGTKM 89 (112)
T ss_dssp CCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHSTTCCC
T ss_pred ccHHHHHHHHHhhcHHhCCCCCCCCCCCCCCccccccccccccCCccccHHHHhcCCccCHHHHHHHHhCccccCCCCCC
Confidence 57889999999999999999986656789999999888888888899999888888999999999999999877788999
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+|.++||++|+++|++||++|+
T Consensus 90 ~~~~~ls~~ei~~l~aYl~~l~ 111 (112)
T 1ccr_A 90 VFPGLXKPQERADLISYLKEAT 111 (112)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHcC
Confidence 9988889999999999999874
No 2
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=99.96 E-value=1.8e-28 Score=142.06 Aligned_cols=102 Identities=60% Similarity=1.100 Sum_probs=91.0
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
||+++|++||.++|++||++++.+....||+|.++..+..+..++|.+++.++..+..|+.++|..+|++|....+++.|
T Consensus 1 gd~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~M 80 (103)
T 1i54_A 1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKM 80 (103)
T ss_dssp CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHSCCBCSHHHHHHHHHCHHHHSTTCSC
T ss_pred CcHHHHHHHHHHhhHHhCCCCCCCCCCCCCCcccccCccccccCCccccHHHHhCCceECHHHHHHHHhCccccCCCCcC
Confidence 68999999999899999999987667789999998888877778888888888889999999999999999877788899
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
||.++++++|+++|++||++++
T Consensus 81 p~~~l~~~~ei~~l~aYl~sl~ 102 (103)
T 1i54_A 81 IFAGIKKKGERQDLVAYLKSAT 102 (103)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHC
T ss_pred CccCCCCHHHHHHHHHHHHHhc
Confidence 9877756999999999999874
No 3
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=99.96 E-value=2.1e-28 Score=144.31 Aligned_cols=102 Identities=52% Similarity=1.036 Sum_probs=92.2
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+++++|++||.++|++||++++.|....+|+|.++..+..+..++|.|++.++..++.|+.++|..+|++|+...+++.|
T Consensus 12 ~~~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~l~~~i~~p~~~~~g~~M 91 (114)
T 2w9k_A 12 GDAARGEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENPXKFMPGTKM 91 (114)
T ss_dssp CCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHCCCBCCHHHHHHHHHCHHHHSTTCCC
T ss_pred ccHHHHHHHHHhhchhhCCCCCCCCCCCCCCcccccCccccccccccccHhHHhcCCccCHHHHHHHHHchhhhcCCCcc
Confidence 57889999999899999999976666789999999888888888899999998889999999999999999877788899
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
||.+++|++|+++|++||++|+
T Consensus 92 p~~~~ls~~ei~~l~aYl~sl~ 113 (114)
T 2w9k_A 92 SFAGMKKPQERADVIAYLETLK 113 (114)
T ss_dssp CCCCCCCHHHHHHHHHHHHTCC
T ss_pred cccccCCHHHHHHHHHHHHHcc
Confidence 9888889999999999999974
No 4
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=99.96 E-value=1.1e-28 Score=150.34 Aligned_cols=99 Identities=43% Similarity=0.817 Sum_probs=91.7
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+|+++|+++| ++|++||+++ +...+||+|.++.++..+..++|.|++.++..++.|+.++|.+||++|+...|++.|
T Consensus 42 ~d~~~G~~lf-~~C~~CH~~~--~~~~~gP~L~gv~~r~~~~~~g~~Ys~al~~~g~~w~~e~L~~~I~~P~~~~pgt~M 118 (140)
T 3m97_X 42 ADPAAGEKVF-GKCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKM 118 (140)
T ss_dssp CCHHHHHHHG-GGTTTTCCSS--SCCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred cCHHHHHHHH-HhhhhhcCCC--CCCCcCCCccccccccccccccccccHhhhhccccCCHHHHHHHHhcccccCCCCCC
Confidence 5788999999 7999999994 356789999999999999999999999999999999999999999999988899999
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
||.++++++|+++|++||++|+
T Consensus 119 p~~gllsdedi~aLiAYL~sLk 140 (140)
T 3m97_X 119 AFAGLPKIEDRANLIAYLEGQQ 140 (140)
T ss_dssp CCCCCCSHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHcC
Confidence 9999989999999999999986
No 5
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=99.96 E-value=2.2e-28 Score=142.87 Aligned_cols=102 Identities=54% Similarity=1.004 Sum_probs=91.1
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+++++|++||+++|++||++++.+....||+|.++..+..+..++|.++..+...+..|+.++|..+|++|+...+++.|
T Consensus 6 ~~~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~M 85 (108)
T 1ycc_A 6 GSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPXKYIPGTKM 85 (108)
T ss_dssp CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCC
T ss_pred ccHHHHHHHHHhhCcccCCCCCCCCCCCCCChhhhccccccccccccccHHHHhcCcccCHHHHHHHHHChhhhcCCccc
Confidence 57889999999899999999987667789999999888887778888888888888899999999999999877788899
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
||.+++|++|+++|++||++|+
T Consensus 86 p~~~l~s~~ei~~l~aYl~sl~ 107 (108)
T 1ycc_A 86 AFGGLKKEKDRNDLITYLKKAC 107 (108)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHhc
Confidence 9888778999999999999874
No 6
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=99.95 E-value=3.3e-28 Score=142.08 Aligned_cols=101 Identities=45% Similarity=0.925 Sum_probs=91.4
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
||+++|++||.+ |++||++++.+....||+|.++..+..+..++|.|+..++..++.|+.++|..+|++|+...+++.|
T Consensus 1 gd~~~G~~lf~~-C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~M 79 (107)
T 1co6_A 1 QDAASGEQVFKQ-CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKM 79 (107)
T ss_dssp CCHHHHHHHHHH-HHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred CCHHHHHHHHHH-hHhhCCCCCCCCCCCCCCcccccCccccccCcccchHHHHhcCceecHHHHHHHHHCccccCCCCCC
Confidence 689999999998 9999999976667789999999888888888899999888889999999999999999877788899
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
||.+++|++|+++|++||++++
T Consensus 80 p~~~l~s~~ei~~l~aYl~sl~ 101 (107)
T 1co6_A 80 IFAGVKDEQKVSDLIAYIKQFN 101 (107)
T ss_dssp CCCCCCCHHHHHHHHHHHHTBC
T ss_pred CCCCCCCHHHHHHHHHHHHHcc
Confidence 9888889999999999999874
No 7
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=99.95 E-value=4.8e-28 Score=141.11 Aligned_cols=101 Identities=48% Similarity=0.944 Sum_probs=89.8
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+++++|++||.++|++||+.++. +...||+|.++..+..+..++|.|++.++..+..|+.++|..+|++|+...+++.|
T Consensus 6 ~~~~~G~~lf~~~C~~CH~~~g~-~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~M 84 (106)
T 1hro_A 6 GDPVEGKHLFHTICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTKM 84 (106)
T ss_dssp CCHHHHHHHHTTTGGGTCCSSTT-CBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCC
T ss_pred ccHHHHHHHHHcchhhhCCCCCC-CCCCCCCCCCccccccccCCCccccHHHHhcCcccCHHHHHHHHhCccccCCCCCC
Confidence 57899999999999999999864 45679999998888877778888898888888999999999999999877888899
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
||.++++++|+++|++||++|+
T Consensus 85 p~~~~~~~~ei~~l~aYl~sl~ 106 (106)
T 1hro_A 85 GYPGQPDPQKRADIIAYLETLK 106 (106)
T ss_dssp CCCCCCCHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHhcC
Confidence 9888878999999999999985
No 8
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=99.94 E-value=7.2e-28 Score=144.33 Aligned_cols=100 Identities=38% Similarity=0.765 Sum_probs=88.1
Q ss_pred CcHHhHHHHHHHhcccccCCCC-------CCCCCCCCCccCCcCCcCCCCCCC-ccchhh---hhcCccccHHHHHHHHh
Q psy14949 1 MSVENGKKIFTRACAQCHTANE-------GGANKVGPNLFGVVGRQTGQAPGF-DYTDAN---KNKGITWSASTLDIYLQ 69 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~-------~g~~~~gp~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~~~~ 69 (102)
||+++|+++|+ +|++||++++ ++.+.+||+|.++.++..+..++| .|++.+ ...++.|+.++|..||.
T Consensus 3 gd~~~G~~~F~-~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l~~~~~~g~~w~~~~l~~~l~ 81 (124)
T 1cxc_A 3 GDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYVQ 81 (124)
T ss_dssp SCHHHHHHHGG-GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHHHhhhhcCccCCHHHHHHHHh
Confidence 68999999994 8999999875 245678999999999998888888 888887 45789999999999999
Q ss_pred CCCCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 70 NPKKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 70 ~~~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+|+..+|+ +.|+|. +++++|+.+|++||++++
T Consensus 82 ~P~~~~pg~~~d~~a~t~M~~~-l~~~~d~~dliaYL~sl~ 121 (124)
T 1cxc_A 82 DPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQVA 121 (124)
T ss_dssp CHHHHHHHHHSCTTCCCSCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ChHhhCCCcccCcccCCCCCCc-cCCHHHHHHHHHHHHHcC
Confidence 99988888 899988 778999999999999874
No 9
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=99.94 E-value=1.7e-27 Score=140.11 Aligned_cols=100 Identities=41% Similarity=0.822 Sum_probs=86.7
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCCCCCCCC
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNPKKYIPG 77 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 77 (102)
||+++|++||+ +|++||++++.+....+|+|.++.++..+..++|.|++.++ ..++.|+.++|..+|++|+...++
T Consensus 2 gd~~~G~~lf~-~Ca~CH~~~g~g~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~i~~p~~~~~g 80 (112)
T 3c2c_A 2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLE 80 (112)
T ss_dssp CCHHHHHHHGG-GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred ccHHHHHHHHH-hHHhhCCCCCCCCCCCCCCcccccCCcccccccccccHHHHhccccCcccCHHHHHHHHhChhhhcCC
Confidence 68999999997 99999999976667789999999999988889999998874 678899999999999998754443
Q ss_pred --------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 78 --------TKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 78 --------~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+.|||. +++++||++|++||++|+
T Consensus 81 ~~~~~~~~~~Mp~~-l~~~~di~~l~aYl~sl~ 112 (112)
T 3c2c_A 81 KSGDPKAKSKMTFK-LTKDDEIENVIAYLKTLK 112 (112)
T ss_dssp HHCCTTCCCSCCCC-CCCHHHHHHHHHHHTTCC
T ss_pred CcCCccccCCCCCc-CCCHHHHHHHHHHHHHcC
Confidence 788977 766899999999999985
No 10
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.94 E-value=4e-27 Score=135.96 Aligned_cols=98 Identities=46% Similarity=0.878 Sum_probs=86.4
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCC-CCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQ-APGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTK 79 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 79 (102)
||+++|+++|+ +|++||+++ +...||+|.++..+..+. .++|.+++.++..++.|+.++|..+|++|+...+++.
T Consensus 2 gd~~~G~~l~~-~C~~CH~~~---~~~~gP~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~ 77 (100)
T 1qn2_A 2 GDAAAGEKAFA-PCKACHNFE---KNGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTK 77 (100)
T ss_dssp CCHHHHHHHTG-GGGGTCCSS---SCSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCS
T ss_pred ccHHHHHHHHH-HHHHhcCCC---CCCCCCCcccccCccccccCCCccccHHHHhcCcccCHHHHHHHHhCcccccCCCC
Confidence 68999999996 599999988 345799999988887766 6788889999888999999999999999987778889
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 80 MVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 80 m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
|||.+++|++|+++|++||++|+
T Consensus 78 Mp~~~~~s~~di~~l~aYl~sl~ 100 (100)
T 1qn2_A 78 MVFPGISDPKKVDDIIAYLKTKS 100 (100)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC
Confidence 99888889999999999999985
No 11
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=99.94 E-value=9.7e-28 Score=142.29 Aligned_cols=98 Identities=34% Similarity=0.726 Sum_probs=86.2
Q ss_pred CcHHhHHHHHHHhcccccCCCCC------CCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCC
Q psy14949 1 MSVENGKKIFTRACAQCHTANEG------GANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNP 71 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~------g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 71 (102)
||+++|+++|. +|++||++++. +.+.+||+|.++.++..++.++|.|++.+. ..++.|+.++|..||++|
T Consensus 1 gd~~~G~~~F~-~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~P 79 (116)
T 1vyd_A 1 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP 79 (116)
T ss_dssp CCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCH
T ss_pred CCHHHHHHHHH-cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHHHhhcccCccCCHHHHHHHHHCH
Confidence 78999999997 89999999854 456789999999999999999999999884 788999999999999999
Q ss_pred CCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 72 KKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 72 ~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+...|+ +.|||. + +++|. +|++||++|+
T Consensus 80 ~~~~pg~~~d~~~~t~Mpf~-l-~~~~~-dliaYL~sl~ 115 (116)
T 1vyd_A 80 GAFLKEKLDDKKAKTEMAFK-L-AKGGE-DVAAYLASVV 115 (116)
T ss_dssp HHHHHHHHTCTTCCCSCCCC-C-SSCHH-HHHHHHHHTC
T ss_pred HHhCCCcccCccccCCCCCC-C-CCHHH-HHHHHHHHhc
Confidence 988888 999977 5 54444 9999999985
No 12
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=99.94 E-value=8.3e-28 Score=145.76 Aligned_cols=98 Identities=35% Similarity=0.690 Sum_probs=88.2
Q ss_pred CcHHhHHHHHHHhcccccCCCCC------CCCCCCCCccCCcCCcCCCCCCCccchhh-----hhcCccccHHHHHHHHh
Q psy14949 1 MSVENGKKIFTRACAQCHTANEG------GANKVGPNLFGVVGRQTGQAPGFDYTDAN-----KNKGITWSASTLDIYLQ 69 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~------g~~~~gp~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~ 69 (102)
||+++|++||.+ |++||++++. +...+||+|.++.++..++.++|.|++.+ ...++.|+.++|..||+
T Consensus 3 gd~~~G~~lF~~-C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l~ 81 (134)
T 2bh4_X 3 GDAAKGEKEFNK-CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYVT 81 (134)
T ss_dssp CCHHHHHHHGGG-TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHHH
T ss_pred CcHHHHHHHHHH-hHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHHhhhhccccCccCCHHHHHHHHh
Confidence 689999999986 9999999864 45788999999999999999999999988 77899999999999999
Q ss_pred CCCCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 70 NPKKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 70 ~~~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+|+...++ +.|||. |+++|+ +|++||++++
T Consensus 82 ~P~~~~pg~~~d~~a~t~Mpf~--Ls~~e~-dliaYL~sl~ 119 (134)
T 2bh4_X 82 DPKPWLVEKTGDSAAKTKKTFK--LGKNQA-DVVAFLAQHS 119 (134)
T ss_dssp CHHHHHHHHHCCTTCCCSCCCC--CCSCHH-HHHHHHHHTC
T ss_pred CHHhcCCCcccCccccCCCCCC--CChHHH-HHHHHHHHcC
Confidence 99988787 899987 688999 9999999874
No 13
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=99.94 E-value=7.1e-27 Score=141.80 Aligned_cols=98 Identities=35% Similarity=0.694 Sum_probs=87.1
Q ss_pred CcHHhHHHHHHHhcccccCCCCC-----CCCCCCCCccCCcCCcCCCCCCCccchhh-----hhcCccccHHHHHHHHhC
Q psy14949 1 MSVENGKKIFTRACAQCHTANEG-----GANKVGPNLFGVVGRQTGQAPGFDYTDAN-----KNKGITWSASTLDIYLQN 70 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~-----g~~~~gp~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~ 70 (102)
||+++|++||.+ |++||++++. +...+||+|.++.++..++.++|.|++.+ ...++.|+.++|..||++
T Consensus 4 gd~~~G~~lF~~-CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~~ 82 (135)
T 155c_A 4 GDAAKGEKEFNK-CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEANLIEYVTD 82 (135)
T ss_dssp CCSHHHHHHHTT-TTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHHHHHHHHCSCCCCCSHHHHHHHHS
T ss_pred cCHHHHHHHHHH-HHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHHhhhhhccccccCCHHHHHHHHhC
Confidence 688999999986 9999999864 45678999999999999999999999988 778899999999999999
Q ss_pred CCCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 71 PKKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 71 ~~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
|+...|+ +.|||. |+++|+ +|++||++++
T Consensus 83 P~~~~pg~~~~~~~~t~Mpf~--L~~~e~-dliAYL~sl~ 119 (135)
T 155c_A 83 PKPLVKKMTDDKGAKTKMTFK--MGKNQA-DVVAFLAQDD 119 (135)
T ss_dssp STTTTTTTSCCSCCCCSCCCC--CCSCHH-HHHHHHHHHS
T ss_pred HHhhCCCccccccccCCCCCC--CCCHHH-HHHHHHHhcC
Confidence 9999998 899977 467777 9999999874
No 14
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=99.93 E-value=5e-26 Score=135.27 Aligned_cols=100 Identities=38% Similarity=0.819 Sum_probs=85.2
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCCCCCCCC
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNPKKYIPG 77 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 77 (102)
||+++|++|| ++|++||++++.+...+||+|.++..+..+..++|.|++.+. ..++.|+.++|..||++|....|+
T Consensus 3 gd~~~G~~lf-~~C~~CH~~~~~~~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~g~~~~~~~l~~~i~~p~~~~~g 81 (121)
T 1jdl_A 3 GDPAKGEAVF-KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRK 81 (121)
T ss_dssp CCHHHHHHHG-GGTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHH-hhhhhhCCCCCCCCCCCCCCchhhcCCccccccCccccHHHHhhhhcCCccCHHHHHHHHhCcccccCC
Confidence 6889999999 799999999976567789999999998888888888888763 567889999999999998765554
Q ss_pred --------------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 78 --------------TKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 78 --------------~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+.|||. +++++|+++|++||++|+
T Consensus 82 ~~~~~~~~~~~~~~~~Mp~~-l~~~~ei~~l~aYL~sl~ 119 (121)
T 1jdl_A 82 FLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQFS 119 (121)
T ss_dssp HHHHTTCGGGGSSCCSCCCC-CCCHHHHHHHHHHHGGGC
T ss_pred cccccchhhcccccccCCcc-CCCHHHHHHHHHHHHHcc
Confidence 788977 655599999999999974
No 15
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=99.93 E-value=3.7e-26 Score=138.91 Aligned_cols=98 Identities=33% Similarity=0.697 Sum_probs=85.9
Q ss_pred CcHHhHHHHHHHhcccccCCCCC------CCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCC
Q psy14949 1 MSVENGKKIFTRACAQCHTANEG------GANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNP 71 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~------g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 71 (102)
+|+++|+++|. +|++||++++. +....||+|.++.++..+..++|.|++.++ ..++.|+.++|..||++|
T Consensus 22 ~~~~~G~~lf~-~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l~~~~~~g~~w~~~~l~~~i~~p 100 (137)
T 1c2n_A 22 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP 100 (137)
T ss_dssp CCHHHHHHHHH-HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHHHHHHHTTCCCCHHHHHHHTTST
T ss_pred cChHHHHHHHH-hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHHHhhhhcCccCCHHHHHHHHhCH
Confidence 57889999998 99999999854 245689999999999999999999998874 688999999999999999
Q ss_pred CCCCCC--------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 72 KKYIPG--------TKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 72 ~~~~~~--------~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+...|+ +.|||. |+++|+ +|++||++++
T Consensus 101 ~~~~~g~~~~~~~~~~Mp~~--Lsd~e~-~liaYL~sl~ 136 (137)
T 1c2n_A 101 GAFLKEKLDDKKAKTGMAFK--LAKGGE-DVAAYLASVV 136 (137)
T ss_dssp THHHHHHHTCSCCCCSCCCC--CSSSHH-HHHHHHHHHC
T ss_pred HhhCCCcccccCcCCCCCCC--CCcHHH-HHHHHHHHcc
Confidence 877776 889975 689999 9999999874
No 16
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=99.92 E-value=3.5e-25 Score=130.74 Aligned_cols=97 Identities=42% Similarity=0.855 Sum_probs=83.2
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhh---hcCccccHHHHHHHHhCCCCCCCC
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITWSASTLDIYLQNPKKYIPG 77 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 77 (102)
||+++|+++|+ +|++||+. +...+||+|.++.++..+..++|.|++.+. ..++.|+.++|.+||++|+...++
T Consensus 1 gd~~~G~~lf~-~C~~CH~~---~~~~~GP~l~gi~~r~~~~~~~~~y~~~~~~~~~~g~~w~~~~L~~~l~~p~~~~~g 76 (114)
T 1i8o_A 1 EDAKAGEAVFK-QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKK 76 (114)
T ss_dssp CCHHHHHHHHH-HHTTTCCS---SSCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred CcHHHHHHHHH-hHHhhCCC---cccCcCcccccccccccccccchhhhHHHhhccccCccccHHHHHHHHHCHHhhCCC
Confidence 68999999996 99999993 356679999999999998888998888774 678899999999999999876666
Q ss_pred --------------CccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 78 --------------TKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 78 --------------~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+.|||. +.+++|+++|++||++|+
T Consensus 77 ~~~d~~~~~~~~~~~~Mp~~-l~~~~d~~~liaYL~sl~ 114 (114)
T 1i8o_A 77 FLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYLATLK 114 (114)
T ss_dssp HHHHTTCGGGCCSCCSSCCC-CCCHHHHHHHHHHHHTTC
T ss_pred CcccccccccccccCcCCCC-CCCHHHHHHHHHHHHhcC
Confidence 889977 544499999999999985
No 17
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=99.84 E-value=7e-21 Score=108.95 Aligned_cols=91 Identities=19% Similarity=0.322 Sum_probs=69.2
Q ss_pred CcHHhHHHHHHHh-cccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC--
Q psy14949 1 MSVENGKKIFTRA-CAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG-- 77 (102)
Q Consensus 1 ~d~~~G~~lf~~~-C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 77 (102)
+++++|++||.++ |++||+.++ ....+|+|.++..+......+ .+..|+.++|..+|+++....+.
T Consensus 4 ~~~~~G~~l~~~~~C~~CHg~~g--~~~~gp~l~~~~~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~g~ 72 (99)
T 1w2l_A 4 PLAELGARLYREKACFSCHSIDG--SRLVGPSFKGLYGSTRTFEDG---------TTAVADENYLRESILQPGAKVVQGY 72 (99)
T ss_dssp CHHHHHHHHHHHTSGGGTCCSSS--CCSSSCCSTTCTTCEEEBTTS---------CEEECCHHHHHHHHHSTTSSCBTTS
T ss_pred ccHHHHHHHHhhCChhhcCCCCC--CCCCCCCcccccccccccCCC---------CcccCCHHHHHHHHHccCccccccc
Confidence 4678999999998 999999885 345689998876554322211 22467899999999999865432
Q ss_pred -CccC-CCCCCCHHHHHHHHHHHhhcC
Q psy14949 78 -TKMV-FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 78 -~~m~-~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+.|| |...||++|+++|++||++|+
T Consensus 73 ~~~Mp~~~~~ls~~ei~~l~~yl~sl~ 99 (99)
T 1w2l_A 73 PNVMPASYASLSEREVAALIEFIKQQQ 99 (99)
T ss_dssp CSCCCGGGGGCCHHHHHHHHHHHHTCC
T ss_pred cccCccccccCCHHHHHHHHHHHHHcC
Confidence 4675 766789999999999999985
No 18
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=99.82 E-value=5.1e-21 Score=111.41 Aligned_cols=80 Identities=29% Similarity=0.517 Sum_probs=55.8
Q ss_pred CcHHhHHHHHHHhcccccCCCCC--CCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC--
Q psy14949 1 MSVENGKKIFTRACAQCHTANEG--GANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP-- 76 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~--g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 76 (102)
||+++|++||.++|++||+.++. +....+|+|.++..+. +.++|..++.+|....+
T Consensus 1 gd~~~G~~lf~~~C~~CH~~~g~~~g~~~~gP~L~~~~~~~--------------------~~~~l~~~i~~p~~~~~g~ 60 (110)
T 2l4d_A 1 GSFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGVTRQR--------------------DANWLVRWLKVPDQMLAEK 60 (110)
T ss_dssp ----CHHHHHHHHTTTTCCSSCSBTTBCTTSCCCTTGGGTS--------------------CTTHHHHHTTSHHHHHHTT
T ss_pred CCHHHHHHHHHHhhHHhcCCCCCCCCCCCCCCChhhhhccc--------------------CHHHHHHHHhChhhhccCc
Confidence 68899999999999999999876 4467789998765433 23456666665543221
Q ss_pred ------------CCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 77 ------------GTKMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 77 ------------~~~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
.+.||... ||++|+++|++||+++
T Consensus 61 ~~~~~~~~~g~~~~~Mp~~~-Ls~~ei~~l~~yl~~~ 96 (110)
T 2l4d_A 61 DPLAMLLFEQYNRLAMPNMR-LGDAEVSALISYLEEE 96 (110)
T ss_dssp CHHHHHHHHHHTSCCCCCCC-CCHHHHHHHHHHHHHH
T ss_pred chHHHHHHhccCcCcCCCCC-CCHHHHHHHHHHHHHc
Confidence 34676445 6999999999999986
No 19
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=99.80 E-value=1.1e-19 Score=109.92 Aligned_cols=82 Identities=29% Similarity=0.466 Sum_probs=62.6
Q ss_pred CcHHhHHHHHH----HhcccccCCCCCCC----CCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949 1 MSVENGKKIFT----RACAQCHTANEGGA----NKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPK 72 (102)
Q Consensus 1 ~d~~~G~~lf~----~~C~~CH~~~~~g~----~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 72 (102)
+++++|++||. .+|++||+.++.+. ...+|+|.++.. .|+.++|..+|.+|.
T Consensus 24 ~~~~~G~~lf~~~~~~~C~~CH~~~g~g~~~~~g~~gP~L~~~~~--------------------~~~~~~l~~~i~~p~ 83 (137)
T 2c1d_B 24 GNPEEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGD--------------------RWTEAQLRGIVANAK 83 (137)
T ss_dssp CCHHHHHHHHTCTTTTCGGGTBCCTTCTTCCSCCCSBCCSTTHHH--------------------HSCHHHHHHHHHHGG
T ss_pred CCHHHHHHHHhcccccChhhhcCCCCCCCccccccCCCCHhHhhh--------------------ccCHHHHHHHHcCcc
Confidence 47889999998 78999999986532 345677765432 246789999999988
Q ss_pred CCCCCCccC-CC----------------------CCCCHHHHHHHHHHHhhcC
Q psy14949 73 KYIPGTKMV-FP----------------------GLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 73 ~~~~~~~m~-~~----------------------~~ls~~e~~~l~~yl~sl~ 102 (102)
...+++.|| |. ..||++|+++|++||++|+
T Consensus 84 ~~~~~~~Mp~~~~~~~~~~~g~~~~~~~~Mp~~~~~Ls~~ei~~l~aYl~sl~ 136 (137)
T 2c1d_B 84 MTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVTLK 136 (137)
T ss_dssp GTSTTCSSCCSSCCSCCSSBBSTTSSSBCCSSCCCSSCHHHHHHHHHHHHTCC
T ss_pred ccCCCcccCccccccccccccccccccccChhhhcCCCHHHHHHHHHHHHHcc
Confidence 666666665 42 2679999999999999985
No 20
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=99.79 E-value=3e-20 Score=104.45 Aligned_cols=81 Identities=23% Similarity=0.298 Sum_probs=56.9
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+|+++|+++|. +|++||+.++.+....+|+|.+... .+..+.|..++...+...++..|
T Consensus 2 ~~~~~G~~ly~-~C~~CHg~~g~g~~~~~P~L~~~~~--------------------~~~~~~l~~~~~g~~~~~~~~~M 60 (87)
T 1cno_A 2 GDIEAGKAKAA-VCAACHGQNGISQVPIYPNLAGQKE--------------------QYLVAALKAYKAGQRQGGQAPVM 60 (87)
T ss_dssp CCHHHHHHHGG-GTHHHHCTTSCCSSTTSCCCTTCCH--------------------HHHHHHHHHHHTTCBCSTTHHHH
T ss_pred ccHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHHcCCcCCCccccc
Confidence 68899999999 9999999987665556787765310 11234555555444332223367
Q ss_pred C-CCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 V-FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~-~~~~ls~~e~~~l~~yl~sl~ 102 (102)
| |...||++||++|++||++++
T Consensus 61 p~~~~~ls~~ei~~l~~yl~~l~ 83 (87)
T 1cno_A 61 QGQATALSDADIANLAAYYASNP 83 (87)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSC
T ss_pred HHHHhhCCHHHHHHHHHHHHhCC
Confidence 4 656789999999999999874
No 21
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=99.79 E-value=1e-19 Score=110.17 Aligned_cols=82 Identities=32% Similarity=0.523 Sum_probs=62.2
Q ss_pred CcHHhHHHHHHH----hcccccCCCCCC----CCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949 1 MSVENGKKIFTR----ACAQCHTANEGG----ANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPK 72 (102)
Q Consensus 1 ~d~~~G~~lf~~----~C~~CH~~~~~g----~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 72 (102)
+++++|++||.+ +|++||+.++.+ +...+|+|.++.. .|+.++|..+|.+|+
T Consensus 25 ~~~~~G~~lf~~~~~~~C~~CH~~~g~~~~~~~~~~gP~L~~~~~--------------------~~~~~~l~~~i~~~~ 84 (138)
T 1h32_B 25 GDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAA--------------------RYPEAMIRGILVNSK 84 (138)
T ss_dssp CCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHH--------------------HSCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHhhccCCChhhccCCCCcCccccCCcCCCChhHhcc--------------------cCCHHHHHHHHhCcc
Confidence 578899999996 799999998631 3456788876532 346889999999987
Q ss_pred CCCCCCccC-C----------------------CCCCCHHHHHHHHHHHhhcC
Q psy14949 73 KYIPGTKMV-F----------------------PGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 73 ~~~~~~~m~-~----------------------~~~ls~~e~~~l~~yl~sl~ 102 (102)
...+++.|| | ...||++|+++|++||++++
T Consensus 85 ~~~~~~~Mp~~~~~~~~~~~~~~~~g~~~M~~~~~~Ls~~ei~~l~aYl~sl~ 137 (138)
T 1h32_B 85 NVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLT 137 (138)
T ss_dssp HHSTTCSSCCTTCCSCCSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC
T ss_pred cCCCCCccCccccccccccccccccCcccCcccccCCCHHHHHHHHHHHHhcC
Confidence 655555554 2 23679999999999999975
No 22
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=99.77 E-value=9.6e-19 Score=94.83 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=54.7
Q ss_pred HhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCCC
Q psy14949 4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFP 83 (102)
Q Consensus 4 ~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~ 83 (102)
++|+++|..+|++||+.++.+ ..+|+|.+... .++.+.|..+++++.. .||.
T Consensus 1 ~~G~~l~~~~C~~CHg~~g~g--~~gP~L~~~~~--------------------~~~~~~l~~~i~~g~~-----~Mp~- 52 (71)
T 1c75_A 1 VDAEAVVQQKCISCHGGDLTG--ASAPAIDKAGA--------------------NYSEEEILDIILNGQG-----GMPG- 52 (71)
T ss_dssp CCHHHHHHHHTHHHHCTTSSC--SSSCCCTTGGG--------------------TSCHHHHHHHHHHCBT-----TBCS-
T ss_pred CcHHHHHHHHHHHHcCCCCCC--CCCCCCccccc--------------------cCCHHHHHHHHHhCCC-----CCCC-
Confidence 369999999999999998653 34788865421 2357889999988763 3544
Q ss_pred CCCCHHHHHHHHHHHhhcC
Q psy14949 84 GLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~sl~ 102 (102)
..||++|+++|++||++++
T Consensus 53 ~~ls~~ei~~l~~yl~~~~ 71 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAEKK 71 (71)
T ss_dssp CSSCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 5579999999999999875
No 23
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=99.76 E-value=4.1e-19 Score=99.23 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=52.3
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
|++++|++||.++|++||+.++.+... ++.+ ..+.+.... .++.+.+..+++++... |.
T Consensus 3 g~~~~G~~ly~~~Ca~CHg~~g~g~~~-~~~l---------------~~p~l~~~~-~~~~~~l~~~i~~g~~~----Mp 61 (85)
T 3cu4_A 3 GSGAGGGELFATHCAGCHPQGGNTVHP-EKTL---------------ARARREANG-IRTVRDVAAYIRNPGPG----MP 61 (85)
T ss_dssp ----CHHHHHHHHTTTTSGGGCCSSST-TCCC---------------CHHHHHHTT-CCSHHHHHHHTTSCCTT----SC
T ss_pred ccHHHHHHHHHHHhHHhCCCCCCCCCC-CCCC---------------CchhhhhcC-CCCHHHHHHHHHcCCCC----CC
Confidence 578899999999999999987543211 1111 012222211 34678899999887632 22
Q ss_pred CCCC-CCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPG-LRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~-~ls~~e~~~l~~yl~sl~ 102 (102)
+|.. .||++|+++|++||+++.
T Consensus 62 ~~~~~~ls~~ei~~l~~yi~~~~ 84 (85)
T 3cu4_A 62 AFGEAMIPPADALKIGEYVVASF 84 (85)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Confidence 5666 789999999999999863
No 24
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=99.76 E-value=4.8e-19 Score=97.86 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=51.1
Q ss_pred HhHHHHHHHhcccccCCCCCCCC-CCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC-
Q psy14949 4 ENGKKIFTRACAQCHTANEGGAN-KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV- 81 (102)
Q Consensus 4 ~~G~~lf~~~C~~CH~~~~~g~~-~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~- 81 (102)
++|+++|.. |++||+.++.+.. ..+|+|.+.. . .+....|..|....+...+++.||
T Consensus 1 a~G~~ly~~-Ca~CHg~~g~g~~~~~~P~L~g~~-------~-------------~~~~~~l~~~~~g~~~~~~~~~Mp~ 59 (79)
T 1c53_A 1 ADGAALYKS-CVGCHGADGSKQAMGVGHAVKGQK-------A-------------DELFKKLKGYADGSYGGEKKAVMTN 59 (79)
T ss_pred CcHHHHHHH-HHhccCCCCCCCCCCCCCcCCCCC-------H-------------HHHHHHHHHHHcCCCCCCcccchHH
Confidence 369999998 9999999876544 4577776521 0 011233444443333333345675
Q ss_pred CCCCCCHHHHHHHHHHHhhc
Q psy14949 82 FPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~sl 101 (102)
|...||++|+++|++||++|
T Consensus 60 ~~~~Ls~~ei~~l~~Yl~sl 79 (79)
T 1c53_A 60 LVKRYSDEEMKAMADYMSKL 79 (79)
T ss_pred HHhhCCHHHHHHHHHHHHhC
Confidence 66678999999999999986
No 25
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=99.76 E-value=5.3e-19 Score=97.95 Aligned_cols=79 Identities=27% Similarity=0.446 Sum_probs=58.3
Q ss_pred hHHHHHHH-hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC-CccCC
Q psy14949 5 NGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG-TKMVF 82 (102)
Q Consensus 5 ~G~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~m~~ 82 (102)
+|++||.+ +|++||+.++.+ .+|+|.++..+..+. ..+.++|..+|+++.....+ ..||.
T Consensus 2 ~G~~l~~~~~C~~CHg~~g~g---~gP~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~ 63 (82)
T 1cch_A 2 DGEALFKSKPCAACHSVDTKM---VGPALKEVAAKNAGV---------------EGAADTLALHIKNGSQGVWGPIPMPP 63 (82)
T ss_dssp CSHHHHHHSTHHHHSCSSSCS---SSCCHHHHHHHSSSC---------------GGGHHHHHHHHHTCCCSSSSSCCCCC
T ss_pred cHHHHHHhCCChhhcCCCCCC---CCcChHHHHHHcCCC---------------chHHHHHHHHhhcCCCCCCCCCCCCC
Confidence 68999996 799999988543 588887765443211 11367899999998754332 45764
Q ss_pred CCCCCHHHHHHHHHHHhhcC
Q psy14949 83 PGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 83 ~~~ls~~e~~~l~~yl~sl~ 102 (102)
. .||++|+++|++||++|+
T Consensus 64 ~-~ls~~ei~~l~~yl~~l~ 82 (82)
T 1cch_A 64 N-PVTEEEAKILAEWVLSLK 82 (82)
T ss_dssp C-SCCHHHHHHHHHHHHHCC
T ss_pred C-CCCHHHHHHHHHHHHhcC
Confidence 4 679999999999999985
No 26
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=99.75 E-value=1.3e-18 Score=106.03 Aligned_cols=83 Identities=28% Similarity=0.400 Sum_probs=63.8
Q ss_pred cHHhHHHHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCC-c
Q psy14949 2 SVENGKKIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGT-K 79 (102)
Q Consensus 2 d~~~G~~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 79 (102)
++++|+++|+ .+|++||+.++.| ...+|+|.++..+... ...+.++|..++++|....+++ .
T Consensus 48 ~~~~G~~l~~~~~C~~CH~~~g~g-~~~gP~L~~~~~~~~~---------------~~~~~~~l~~~i~~~~~~~~g~~~ 111 (146)
T 3o0r_C 48 AVVRGKLVWEQNNCVGCHTLLGEG-AYFAPELGNVVGRRGG---------------EEGFNTFLQAWMKIQPLNVPGRRA 111 (146)
T ss_dssp HHHHHHHHHHHHTGGGTSEETTEE-CSSSCBCSSGGGGTTH---------------HHHHHHHHHHHHHHCCCCCTTSCC
T ss_pred HHHHHHHHHHhCCCcccCCCcCCC-CCCCCCchhhhhhccc---------------ccchHHHHHHHHhCcccCCCCCCC
Confidence 4678999999 5699999998654 4678999887644321 0123578999999988777775 6
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc
Q psy14949 80 MVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 80 m~~~~~ls~~e~~~l~~yl~sl 101 (102)
||... ||++|+++|++||+++
T Consensus 112 Mp~~~-Ls~~ei~~l~ayl~~l 132 (146)
T 3o0r_C 112 MPQFH-LSEGQVDDLAEFLKWS 132 (146)
T ss_dssp CCCCC-CCHHHHHHHHHHHHHH
T ss_pred CCCCC-cCHHHHHHHHHHHHHh
Confidence 87555 6999999999999875
No 27
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=99.75 E-value=9.2e-19 Score=97.05 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=57.7
Q ss_pred HhHHHHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC-CCccC
Q psy14949 4 ENGKKIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP-GTKMV 81 (102)
Q Consensus 4 ~~G~~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~m~ 81 (102)
++|++||. .+|++||+.++.+ .+|.|..+..+..+. .++.++|..+|+++..... .+.||
T Consensus 1 ~~G~~l~~~~~C~~CHg~~g~g---~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp 62 (82)
T 2exv_A 1 EDPEVLAKNKGCVACHAIDTKM---VGPAYKDVAAKFAGQ---------------AGAEAELAQRIKNGSQGVWGPIPMP 62 (82)
T ss_dssp CCHHHHHHHTTGGGTCCSSSCC---SSCCHHHHHHHHTTC---------------TTHHHHHHHHHHHCBSSSSSSSCBC
T ss_pred CcHHHHHHhCCchhhcCCCCCC---CCcCHHHHHHHhcCC---------------cchHHHHHHHHHcCCCCCCCCCCCC
Confidence 36999998 5799999988643 578777654332211 1247889999998875332 34576
Q ss_pred CCCCCCHHHHHHHHHHHhhcC
Q psy14949 82 FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~sl~ 102 (102)
.. .||++|+++|++||++|+
T Consensus 63 ~~-~ls~~ei~~l~~yl~~lk 82 (82)
T 2exv_A 63 PN-AVSDDEAQTLAKWVLSQK 82 (82)
T ss_dssp CC-CCCHHHHHHHHHHHHTCC
T ss_pred CC-CCCHHHHHHHHHHHHhCC
Confidence 44 569999999999999985
No 28
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=99.75 E-value=2.9e-18 Score=95.04 Aligned_cols=72 Identities=24% Similarity=0.456 Sum_probs=54.9
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+++++|+.||..+|++||+.++ ..+|+|.+. .++.++|..+|+++... |+
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~g----g~~P~L~~~----------------------~~~~~~l~~~i~~g~~~----Mp 51 (80)
T 1wve_C 2 SQWGSGKNLYDKVCGHCHKPEV----GVGPVLEGR----------------------GLPEAYIKDIVRNGFRA----MP 51 (80)
T ss_dssp CCSSSHHHHHHHTTHHHHSTTT----CSSCCCTTS----------------------CCCHHHHHHHHHHCBTT----BC
T ss_pred ccHHHHHHHHHHHHHHhCCCCC----CCCCCCCCC----------------------CCCHHHHHHHHHhCcCC----CC
Confidence 5788999999999999999762 257877641 12577899999887632 22
Q ss_pred CCC-CCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFP-GLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~-~~ls~~e~~~l~~yl~sl~ 102 (102)
+|. ..||++|+++|++||++++
T Consensus 52 ~~~~~~ls~~ei~~l~~yl~~~~ 74 (80)
T 1wve_C 52 AFPASYVDDESLTQVAEYLSSLP 74 (80)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHSC
T ss_pred CCcccCCCHHHHHHHHHHHHHCc
Confidence 553 5679999999999999874
No 29
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=99.75 E-value=1.7e-18 Score=96.49 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=55.8
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+++++|++||+++|++||+.++.+ ...+|.|.... +... ...+.+.+...++++... |+
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~~~~-~~~~p~l~~~~---------------~~~~-~~~~~~~~~~~i~~g~~~----Mp 60 (86)
T 3ph2_B 2 ADLATGAKVFSANCAACHAGGINL-VNAEKTLKKEA---------------LEKF-GMNSIVAITTVVTNGKAG----MP 60 (86)
T ss_dssp CCHHHHHHHHHHHTHHHHCSSSCT-TCSSSSCCHHH---------------HHHT-TCCSHHHHHHHHHHCBTT----BC
T ss_pred ccHHHHHHHHHHHhHHhCCCCCCC-CCCCCccChhh---------------HHhc-cCCCHHHHHHHHHhCCCC----CC
Confidence 588999999999999999976532 33355554311 0000 123577888889887632 22
Q ss_pred CCCCCCCHHHHHHHHHHHhhc
Q psy14949 81 VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl 101 (102)
+|...||++|+++|++||+++
T Consensus 61 ~~~~~ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 61 AFKGRLTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp CCTTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHh
Confidence 566678999999999999986
No 30
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=99.75 E-value=5e-19 Score=107.13 Aligned_cols=85 Identities=27% Similarity=0.347 Sum_probs=60.4
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC----
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG---- 77 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---- 77 (102)
|+++|++||.++|++||+ . +...+||+|. + + .+.|.++ ....|+.+.|..||++|+...++
T Consensus 25 d~~~G~~lf~~~Ca~CH~-~--g~~~~gP~L~-l-g-----~~~~~~s-----~~~~~~~~~L~~~l~~p~~~~~~~~~~ 89 (135)
T 1e29_A 25 QFTNGQKIFVDTCTQCHL-Q--GKTKTNNNVS-L-G-----LADLAGA-----EPRRDNVLALVEFLKNPKSYDGEDDYS 89 (135)
T ss_dssp HHHHHHHHHHHHTHHHHG-G--GCBSSSSSCS-S-S-----HHHHHTS-----SSCCSSHHHHHHHHHSCBCTTSCSBCT
T ss_pred cHHHHHHHHHhHHHHhcC-C--CCCCCCCCce-e-c-----ccccccc-----ccccCCHHHHHHHHhChhhccCccccc
Confidence 578999999999999999 3 3566789887 3 2 1222111 12248999999999998764332
Q ss_pred ---------CccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 78 ---------TKMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 78 ---------~~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
.+||....||++|+++|++||.++
T Consensus 90 ~~~p~~~~~~~mp~~~~Lsd~ei~~laaYl~~~ 122 (135)
T 1e29_A 90 ELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIA 122 (135)
T ss_dssp TTSCCTTCTTTCGGGTTCCHHHHHHHHHHHHHH
T ss_pred cccccccchhcccccccCCHHHHHHHHHHHHhc
Confidence 235433457999999999999875
No 31
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=99.75 E-value=4.1e-19 Score=102.48 Aligned_cols=81 Identities=25% Similarity=0.326 Sum_probs=54.7
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+++++|+++|+ +|++||+.++.+....+|+|.+.. . .+..+.|..+...++.......|
T Consensus 22 ~~~~~G~~l~~-~C~~CHg~~g~g~~~~~p~L~g~~-------~-------------~~~~~~l~~~~~g~~~~~~~~~M 80 (103)
T 2zzs_A 22 GDAAAGQAKAA-VCAACHGADGNATIPGYPNLKGQN-------E-------------QYIVSSIKAYKNKERSGGLAAVM 80 (103)
T ss_dssp CCHHHHHHHTT-TTHHHHCTTSCCCSTTCCCCTTCC-------H-------------HHHHHHHHHHHTTCBCSTTHHHH
T ss_pred CCHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCCC-------H-------------HHHHHHHHHHHcCCCCCCcccch
Confidence 47889999999 999999998876556678876521 0 11233444444433321111267
Q ss_pred C-CCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 V-FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~-~~~~ls~~e~~~l~~yl~sl~ 102 (102)
| |...||++|+++|++||++++
T Consensus 81 p~~~~~ls~~ei~~l~~yl~~l~ 103 (103)
T 2zzs_A 81 QAQASLLSDDDIANLAAYYSSLK 103 (103)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHC-
T ss_pred HHHHhhCCHHHHHHHHHHHHhCC
Confidence 5 656779999999999999975
No 32
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=99.74 E-value=2.1e-18 Score=96.63 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=54.7
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
||+++|++||+++|++||+.++ ...+|.+........ .|. .-..+.+.|...++++...||
T Consensus 1 gd~~~G~~l~~~~C~~CHg~~g---~~~~p~~~~~~~~~~----~~l--------~~~~~~~~l~~~i~~g~~~Mp---- 61 (88)
T 3dmi_A 1 GDVGAGEQIFNANCAACHAGGQ---NVIMPEKTLEKEALD----QYL--------AGGRTEKSIISQVTGGKNAMP---- 61 (88)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGC---CSSSTTSCSSHHHHH----HHS--------TTCSSHHHHHHHHHHCBTTBC----
T ss_pred CcHHHHHHHHHHHHHHhCCCCC---CCcCCCCCCCHHHHH----HHH--------hcCCCHHHHHHHHHcCcCCCC----
Confidence 6899999999999999999553 334555442211000 000 001256788888888763222
Q ss_pred CCCCCCCHHHHHHHHHHHhhc
Q psy14949 81 VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl 101 (102)
++...||++|+++|++||+++
T Consensus 62 ~~~~~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 62 AFGGRLSDEEIANVAAYVLAS 82 (88)
T ss_dssp CCTTTSCHHHHHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHH
Confidence 566678999999999999986
No 33
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=99.74 E-value=1e-18 Score=97.26 Aligned_cols=79 Identities=25% Similarity=0.419 Sum_probs=54.6
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
+++++|++||..+|++||+.++.+. +|.+... .+.+... ..++.+.|..+++++. ..|
T Consensus 1 ~~~~~G~~l~~~~C~~CHg~~g~g~---~~~~~~~-------------~~~l~~~-~~~~~~~l~~~i~~g~-----~~M 58 (85)
T 1gdv_A 1 ADLDNGEKVFSANCAACHAGGNNAI---MPDKTLK-------------KDVLEAN-SMNTIDAITYQVQNGK-----NAM 58 (85)
T ss_dssp CHHHHHHHHHHHHTHHHHGGGCCSS---STTSCCC-------------HHHHHHT-TCCSHHHHHHHHHHCB-----TTB
T ss_pred CcHHHHHHHHHHhhHhhCCCCcCCC---CCCCCCC-------------cHHHHHc-cCCCHHHHHHHHHhCc-----CCC
Confidence 5789999999999999999885432 2322111 1122111 1345788889998875 334
Q ss_pred -CCCCCCCHHHHHHHHHHHhhc
Q psy14949 81 -VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 81 -~~~~~ls~~e~~~l~~yl~sl 101 (102)
+|...||++|+++|++||+++
T Consensus 59 p~~~~~ls~~ei~~l~~yl~~~ 80 (85)
T 1gdv_A 59 PAFGGRLVDEDIEDAANYVLSQ 80 (85)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
Confidence 566678999999999999986
No 34
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=99.73 E-value=6.6e-18 Score=100.75 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=59.1
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC--------
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK-------- 73 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 73 (102)
++++|++||+++|++||+.++ ...+|+|.... .......+..|+.+.|..+|+++..
T Consensus 23 ~~~~G~~lf~~~Ca~CHg~~g---~~~gP~l~~~~------------~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 87 (129)
T 1f1c_A 23 EIKKGQQVFNAACAQCHALGV---TRTNPDVNLSP------------EALALATPPRDNIAALVDYIKNPTTYDGFVEIS 87 (129)
T ss_dssp HHHHHHHHHHHHTHHHHGGGC---CTTCSSSCSSH------------HHHHTSSSCCCSHHHHHHHHHSCBCTTSCSBCT
T ss_pred cHHHHHHHHHhhhHHhcCCCC---CCCCCCcccCH------------HHHHhcCCccchHHHHHHHHhCCcccccchhHh
Confidence 567999999999999999753 34577765311 0000111235678899999999864
Q ss_pred -----CCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 74 -----YIPGTKMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 74 -----~~~~~~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
..+...||....||++|+++|++||+++
T Consensus 88 ~~~~~~~~~~~Mp~~~~Ls~~ei~~l~~Yl~~l 120 (129)
T 1f1c_A 88 ELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQ 120 (129)
T ss_dssp TTSCSTTCTTTCGGGSSCCHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 2344567532567999999999999886
No 35
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=99.73 E-value=1.9e-17 Score=95.53 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=57.8
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCC--
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGT-- 78 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-- 78 (102)
+++++|++||..+|++||+.++.+. ..++.+ +.+.+...+ .++.+.|..+|+++...+|..
T Consensus 3 ~~~~~G~~l~~~~Ca~CHg~~g~g~-~~g~~~---------------~~p~l~~~~-~~~~~~l~~~i~~g~~~Mp~~~~ 65 (105)
T 2ce0_A 3 LDIQRGATLFNRACAACHDTGGNII-QPGATL---------------FTKDLERNG-VDTEEEIYRVTYFGKGRMPGFGE 65 (105)
T ss_dssp CCHHHHHHHHHHHTTTTSGGGCCSS-STTCCS---------------SHHHHHHTT-CCSHHHHHHHHHHCBTTBCBCBT
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCcC-CCCccc---------------CCcchhhcC-CCCHHHHHHHHHhCcCCCCcccc
Confidence 4788999999999999999886532 123221 112222111 146778999998876555532
Q ss_pred -----cc-CCCCCCCHHHHHHHHHHHhhc
Q psy14949 79 -----KM-VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 79 -----~m-~~~~~ls~~e~~~l~~yl~sl 101 (102)
.| +|...||++|+++|++||+++
T Consensus 66 ~~~~~~M~~~~~~ls~~ei~~l~~yl~~~ 94 (105)
T 2ce0_A 66 KCTPRGQCTFGPRLQDEEIKLLAEFVKFQ 94 (105)
T ss_dssp TCCSGGGBCSSCCBCHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHh
Confidence 23 455678999999999999986
No 36
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=99.73 E-value=1.3e-17 Score=93.50 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=55.8
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
||+++|++||..+|++||+.++.+. ..+|+|....... ....+. ..+.+.+..++.++...||
T Consensus 1 g~~~~G~~l~~~~C~~CHg~~g~g~-~~~P~L~~~~~~~--~l~~~~----------~~~~~~l~~~i~~g~~~Mp---- 63 (89)
T 1f1f_A 1 GDVAAGASVFSANCAACHMGGRNVI-VANKTLSKSDLAK--YLKGFD----------DDAVAAVAYQVTNGKNAMP---- 63 (89)
T ss_dssp -CHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHHHHHH--HSTTTT----------TCHHHHHHHHHHHCBTTBC----
T ss_pred CcHHHHHHHHHHHhHHhCCCCCCCC-cCCCCCCHHHHHH--HhhccC----------ccCHHHHHHHHHcCCCCCC----
Confidence 6899999999999999999986543 3577774311000 000000 1126678888887653222
Q ss_pred CCCCCCCHHHHHHHHHHHhhc
Q psy14949 81 VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl 101 (102)
+|...||++|+++|++||+++
T Consensus 64 ~~~~~ls~~ei~~l~~yl~~~ 84 (89)
T 1f1f_A 64 GFNGRLSPLQIEDVAAYVVDQ 84 (89)
T ss_dssp CCTTTSCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHH
Confidence 566678999999999999986
No 37
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=99.72 E-value=1.2e-18 Score=103.38 Aligned_cols=76 Identities=26% Similarity=0.485 Sum_probs=56.8
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC-----
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP----- 76 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----- 76 (102)
++++|++||.++|++||+.++ ...||+|.++..+. +.++|..+|++|+...+
T Consensus 33 ~~~~G~~l~~~~C~~CH~~~g---~~~gP~l~~~~~~~--------------------~~~~l~~~i~~~~~~~~~~~~~ 89 (124)
T 3cp5_A 33 LAQQGEQLFNTYCTACHRLDE---RFIGPALRDVTKRR--------------------GPVYIMNVMLNPNGMIQRHPVM 89 (124)
T ss_dssp HHHHHHHHHHHHTTTTCCSSS---CSSSCCCTTHHHHS--------------------CHHHHHHHHHCHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhhHHhCCCCC---CCCCCCcccccccc--------------------CHHHHHHHHhChHhhcccchhH
Confidence 467899999999999999874 34578887654322 36788888888764211
Q ss_pred -------CCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 77 -------GTKMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 77 -------~~~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
++.||.. .||++|+++|++||+++
T Consensus 90 ~~~~~~~~~~Mp~~-~Ls~~ei~~l~~Yl~~l 120 (124)
T 3cp5_A 90 KQLVQEYGTMMTDM-ALSEEQARAILEYLRQV 120 (124)
T ss_dssp HHHHHHHCSCCCCC-CCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCC-CCCHHHHHHHHHHHHHh
Confidence 2567754 46999999999999986
No 38
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=99.72 E-value=2.9e-17 Score=100.41 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=58.2
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV 81 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~ 81 (102)
++++|+.||..+|++||+.++.| ..+|+|.+.... +. ..++.+.|..+|++++ ++.|.+
T Consensus 45 ~~~~G~~l~~~~Ca~CHg~~g~g--~~gP~L~~~~~~---------~~-------~~~~~~~l~~~i~~G~---~~~Mp~ 103 (147)
T 2gc4_D 45 ILPEAEELYAGMCSGCHGHYAEG--KIGPGLNDAYWT---------YP-------GNETDVGLFSTLYGGA---TGQMGP 103 (147)
T ss_dssp THHHHHHHHHHHTHHHHCTTSSC--SSSCCCSSSCCS---------SG-------GGGSHHHHHHHHHHCC---STTCCC
T ss_pred HHHHHHHHHHhhcHHhCCCCCCC--CCCCCCCccccc---------cc-------CcCCHHHHHHHHHcCC---CCCCCC
Confidence 56799999999999999998654 236888653211 10 0235778999998875 233336
Q ss_pred CCCCCCHHHHHHHHHHHhhcC
Q psy14949 82 FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~sl~ 102 (102)
|...||++|+++|++||++++
T Consensus 104 ~~~~ls~~ei~~l~~Yl~~l~ 124 (147)
T 2gc4_D 104 MWGSLTLDEMLRTMAWVRHLY 124 (147)
T ss_dssp CTTTSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 766789999999999999873
No 39
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=99.72 E-value=7.8e-18 Score=94.91 Aligned_cols=86 Identities=19% Similarity=0.304 Sum_probs=53.3
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccH-HHHHHHHhCCCCCCCCCc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA-STLDIYLQNPKKYIPGTK 79 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 79 (102)
+|+++|++||.++|++||+.++.+... .|++.... .. .|... ......+. +.|..+++++...||
T Consensus 1 ~d~~~G~~l~~~~C~~CHg~~g~g~~~-~~~~~~~~--~~----~~l~~----~~~~~~~~~~~~~~~i~~g~~~Mp--- 66 (93)
T 3dr0_A 1 ADAAAGAQVFAANCAACHAGGNNAVMP-TKTLKADA--LK----TYLAG----YKDGSKSLEEAVAYQVTNGQGAMP--- 66 (93)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSSST-TCCSSHHH--HH----HHSTT----TTTTSSCHHHHHHHHHHHCBTTBC---
T ss_pred CcHHHHHHHHHHHhHHhcCCCCCCCCC-CcccCcch--HH----HHHhh----cccccccHHHHHHHHHHcCCCCCC---
Confidence 689999999999999999987543211 22221100 00 00000 00001134 788888888763222
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc
Q psy14949 80 MVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 80 m~~~~~ls~~e~~~l~~yl~sl 101 (102)
+|...||++|+++|++||+++
T Consensus 67 -~~~~~ls~~ei~~l~~yl~~l 87 (93)
T 3dr0_A 67 -AFGGRLSDADIANVAAYIADQ 87 (93)
T ss_dssp -CCBTTBCHHHHHHHHHHHHHH
T ss_pred -CCCCCCCHHHHHHHHHHHHHH
Confidence 565678999999999999986
No 40
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=99.72 E-value=7.2e-18 Score=92.97 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=55.0
Q ss_pred HHHHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC-CCCCCccCCC
Q psy14949 6 GKKIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK-YIPGTKMVFP 83 (102)
Q Consensus 6 G~~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~m~~~ 83 (102)
|++||. .+|++||+.++. ..||+|.++..+... .+.++|..+|+++.. ..+.+.||..
T Consensus 1 ~~~l~~~~~C~~CHg~~g~---~~gP~l~~~~~~~~~-----------------~~~~~l~~~i~~g~~~~~~~~~Mp~~ 60 (79)
T 2d0s_A 1 DEALAKAKGCMACHAIDKK---LVGPSYKDVAKKYTE-----------------ADVPKLVEKVKKGGAGVWGPVPMPPH 60 (79)
T ss_dssp CHHHHHHTTGGGTCCSSSC---SSSCCHHHHHHHCCG-----------------GGHHHHHHHHHHCBCSSSCSSCBCCC
T ss_pred CHhHHhcCCChhhcCCCCC---CCCCCHHHHHHHHcc-----------------ccHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 588997 479999998863 357888765433210 035688889988864 2344557533
Q ss_pred CCCCHHHHHHHHHHHhhcC
Q psy14949 84 GLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~sl~ 102 (102)
..||++|+++|++||++++
T Consensus 61 ~~Ls~~ei~~l~~yl~~lk 79 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTLK 79 (79)
T ss_dssp TTSCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhCc
Confidence 4679999999999999985
No 41
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*
Probab=99.71 E-value=2.7e-17 Score=105.60 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=62.9
Q ss_pred CcHHhHHHHHHH----------------hcccccCCCCCCC--CCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHH
Q psy14949 1 MSVENGKKIFTR----------------ACAQCHTANEGGA--NKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62 (102)
Q Consensus 1 ~d~~~G~~lf~~----------------~C~~CH~~~~~g~--~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (102)
||.++|+.+|.. +|++||+.++.|. +.+||+|.+..... .++.+
T Consensus 96 gd~~~Ge~lf~~G~g~~~~d~g~~ly~~~CaaCHg~dG~G~~~G~~GP~Lag~~~~r------------------~~~~~ 157 (208)
T 3oa8_B 96 GSWKDGAKVAQNGRGGQFSDPPGTVSGGNCYACHQLDPKEVSYGTLGPSLVGYGRER------------------NFSAE 157 (208)
T ss_dssp CCHHHHHHHHHCCCSSSTTSCTTCCCCCCGGGTCCCSTTCCCCCSSSCCCTTHHHHT------------------TTCHH
T ss_pred cCHHHHHHHHhccccccccchhhhhhcccchhhCCCCCcCCCCCCcCCCcccccccc------------------cCCHH
Confidence 678899999986 7999999997653 45789998854211 12344
Q ss_pred HHH---HHHhCCCCCCCCCccC-CC--CCCCHHHHHHHHHHHhhcC
Q psy14949 63 TLD---IYLQNPKKYIPGTKMV-FP--GLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 63 ~l~---~~~~~~~~~~~~~~m~-~~--~~ls~~e~~~l~~yl~sl~ 102 (102)
.|. .+|.+++...+++.|| |. +.||++||++|++||+++.
T Consensus 158 ~L~~~~~~I~~~~~~~p~~~MP~fa~~g~LSdeEIaaLaaYL~s~~ 203 (208)
T 3oa8_B 158 DAKIAFAKVYDAQASLACSSMPRFGVNGVLTEQQIKDVVAYLFDPE 203 (208)
T ss_dssp HHHHHHHHHHCGGGTSTTCSSCCTTTTTSSCHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhhCccCCCCCCCCCcccccCCCCHHHHHHHHHHHHccC
Confidence 444 6778877777778885 65 4689999999999999863
No 42
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=99.70 E-value=2.1e-17 Score=93.01 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=53.6
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhh-cCccccHHHHHHHHhCCCCCCCCCc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKN-KGITWSASTLDIYLQNPKKYIPGTK 79 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 79 (102)
+|+++|++||..+|++||+.++.+. ..+|.+.. +.+.. ..-.++.+.|...++++. ..
T Consensus 1 ~~~~~G~~l~~~~C~~CHg~~g~g~-~~~~~l~~---------------~~~~~~~~~~~~~~~l~~~i~~g~-----~~ 59 (90)
T 1cyi_A 1 ADLALGAQVFNGNCAACHMGGRNSV-MPEKTLDK---------------AALEQYLDGGFKVESIIYQVENGK-----GA 59 (90)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSH---------------HHHHHHSTTCSSHHHHHHHHHHCB-----TT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCC-CCCCCCCh---------------HHHHHHhcCCCCHHHHHHHHhcCC-----CC
Confidence 6899999999999999999875432 11222210 01110 000235778888888764 33
Q ss_pred c-CCCCCCCHHHHHHHHHHHhhc
Q psy14949 80 M-VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 80 m-~~~~~ls~~e~~~l~~yl~sl 101 (102)
| +|...||++|+++|++||+++
T Consensus 60 Mp~~~~~ls~~ei~~l~~yl~~~ 82 (90)
T 1cyi_A 60 MPAWADRLSEEEIQAVAEYVFKQ 82 (90)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCcccccCCHHHHHHHHHHHHhc
Confidence 4 566678999999999999986
No 43
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.70 E-value=9.5e-17 Score=100.62 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=58.6
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM- 80 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m- 80 (102)
++++|+.||..+|++||+.++.|. .+|+|.+... .+ +..++.+.|..+|++++ ++ .|
T Consensus 53 ~~~~G~~lf~~~Ca~CHg~~g~G~--~gP~L~~~~~---------~~-------~~~~~~~~l~~~i~~G~---~g-~MP 110 (172)
T 2c8s_A 53 CLRNGESLFATSCSGCHGHLAEGK--LGPGLNDNYW---------TY-------PSNTTDVGLFATIFGGA---NG-MMG 110 (172)
T ss_dssp HHHHHHHHHHHHTHHHHCTTSSCS--SSCCSSSSCC---------SS-------GGGGSHHHHHHHHHTCT---TS-SSC
T ss_pred HHHHHHHHHHhhhHHhCCCCCCCC--CCCCCccccc---------cc-------cccCCHHHHHHHHHhCC---CC-CCC
Confidence 357899999999999999986543 4688875321 11 01246788999999876 23 45
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+|...||++|+++|++||++++
T Consensus 111 ~~~~~Lsd~ei~~laaYl~sl~ 132 (172)
T 2c8s_A 111 PHNENLTPDEMLQTIAWIRHLY 132 (172)
T ss_dssp SCCCCSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhc
Confidence 5766789999999999999874
No 44
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=99.70 E-value=5.1e-18 Score=93.99 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=55.6
Q ss_pred HHHHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC-CCCccCCC
Q psy14949 6 GKKIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI-PGTKMVFP 83 (102)
Q Consensus 6 G~~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~m~~~ 83 (102)
|++||. .+|++||+.++. ..+|.|.++..+..+. ..+.++|..+|+++.... +...||..
T Consensus 1 ~~~l~~~~~C~~CHg~~g~---~~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~~ 62 (81)
T 1a56_A 1 DADLAKKNNCIACHQVETK---VVGPALKDIAAKYADK---------------DDAATYLAGKIKGGSSGVWGQIPMPPN 62 (81)
T ss_dssp CHHHHHHHSHHHHBCSSCB---SSSCCHHHHHHHHTTS---------------SSHHHHHHHHHHHCBSSSSSSCCBCSC
T ss_pred CHhHHhccCchhhCCCCCC---cCCcCHHHHHHHhcCC---------------ccHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 578998 679999998853 3578777654332211 113678999998887543 23567533
Q ss_pred CCCCHHHHHHHHHHHhhcC
Q psy14949 84 GLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~sl~ 102 (102)
..||++|+++|++||++|+
T Consensus 63 ~~Ls~~ei~~l~~yl~~lk 81 (81)
T 1a56_A 63 VNVSDADAKALADWILTLK 81 (81)
T ss_dssp CSSSSHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 6679999999999999875
No 45
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=99.69 E-value=3.2e-17 Score=91.96 Aligned_cols=80 Identities=19% Similarity=0.310 Sum_probs=53.0
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhh-cCccccHHHHHHHHhCCCCCCCCCc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKN-KGITWSASTLDIYLQNPKKYIPGTK 79 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 79 (102)
+++++|++||..+|++||+.++.+.. ..|.+.. ..+.. ..-.++.+.|..+++++. ..
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~g~~~~-~~~~l~~---------------~~~~~~~~~~~~~~~l~~~i~~g~-----~~ 60 (89)
T 1c6r_A 2 ADLALGKQTFEANCAACHAGGNNSVI-PDHTLRK---------------AAMEQFLQGGFNLEAITYQVENGK-----GA 60 (89)
T ss_dssp CCHHHHHHHHHHHTHHHHGGGCCSSS-TTCCSSH---------------HHHHHHSTTCSSHHHHHHHHHHCB-----TT
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCC-CCcCcCc---------------hhHHHHhcCCCCHHHHHHHHHcCC-----CC
Confidence 57899999999999999998753221 1222211 00000 000135778888898765 23
Q ss_pred c-CCCCCCCHHHHHHHHHHHhhc
Q psy14949 80 M-VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 80 m-~~~~~ls~~e~~~l~~yl~sl 101 (102)
| +|...||++|+++|++||+++
T Consensus 61 Mp~~~~~ls~~ei~~l~~yl~~~ 83 (89)
T 1c6r_A 61 MPAWSGTLDDDEIAAVAAYVYDQ 83 (89)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHH
Confidence 4 566678999999999999986
No 46
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=99.69 E-value=1.1e-17 Score=92.48 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=54.7
Q ss_pred HHHH-HhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCC-CccCCCCC
Q psy14949 8 KIFT-RACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPG-TKMVFPGL 85 (102)
Q Consensus 8 ~lf~-~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~m~~~~~ 85 (102)
+||. .+|++||+.++. ..+|+|.++..+.... .++.++|..+|+++.....+ ..||.. .
T Consensus 3 ~l~~~~~C~~CHg~~g~---g~gP~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~ 63 (80)
T 1ayg_A 3 QLAKQKGCMACHDLKAK---KVGPAYADVAKKYAGR---------------KDAVDYLAGKIKKGGSGVWGSVPMPPQ-N 63 (80)
T ss_dssp TTTTSSSSGGGCCSSCC---SSSCCHHHHHHHCSSC---------------TTHHHHHHHHHHSCBCSSSCSCCBCCC-C
T ss_pred hhHhhCCchhhcCCCCC---CCCCChHHHHHHhcCC---------------ccHHHHHHHHHHcCCCCCCCCCCCCCC-C
Confidence 5776 469999999853 3688887755433211 23568899999998764433 347644 5
Q ss_pred CCHHHHHHHHHHHhhcC
Q psy14949 86 RKEKDREDLIAYLSTLH 102 (102)
Q Consensus 86 ls~~e~~~l~~yl~sl~ 102 (102)
||++|+++|++||++++
T Consensus 64 Lsd~ei~~l~~yl~~lk 80 (80)
T 1ayg_A 64 VTDAEAKQLAQWILSIK 80 (80)
T ss_dssp CCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 79999999999999985
No 47
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=99.68 E-value=2.3e-17 Score=92.03 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=54.7
Q ss_pred HhHHHHHHH-hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC----CC
Q psy14949 4 ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP----GT 78 (102)
Q Consensus 4 ~~G~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~ 78 (102)
++|++||.+ +|++||+.++. ..+|.+..+..+..+ ..+.|..|+..++.... ..
T Consensus 1 a~G~~l~~~~~C~~CHg~~g~---g~gp~l~~l~~~~~~------------------~~~~l~~~~~~~~~~~~~~~~~~ 59 (87)
T 2zxy_A 1 ADGKAIFQQKGCGSCHQANVD---TVGPSLKKIAQAYAG------------------KEDQLIKFLKGEAPAIVDPAKEA 59 (87)
T ss_dssp CCHHHHHHHTTGGGTCCSSSC---SSSCCHHHHHHHTTT------------------CHHHHHHHHTTCSCCSSCGGGHH
T ss_pred CChHHHHhcCCchhhcCCCCC---CCCCChHHHHHHhcC------------------CHHHHHHHHhcccccccCCCCCC
Confidence 369999998 79999998853 347777655433210 25678888887764322 23
Q ss_pred ccC-C---CCCCCHHHHHHHHHHHhhcC
Q psy14949 79 KMV-F---PGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 79 ~m~-~---~~~ls~~e~~~l~~yl~sl~ 102 (102)
.|| | ...||++|+++|++||++|+
T Consensus 60 ~Mp~~~~~~~~ls~~ei~~l~~yl~sl~ 87 (87)
T 2zxy_A 60 IMKPQLTMLKGLSDAELKALADFILSHK 87 (87)
T ss_dssp HHGGGGGGGGGCCHHHHHHHHHHHHTC-
T ss_pred CCCCccccccCCCHHHHHHHHHHHHhcC
Confidence 564 5 45679999999999999985
No 48
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=99.68 E-value=1.1e-16 Score=90.23 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=53.1
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhc-CccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK-GITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
++++|++||.++|++||+.++.+. ..+|.|... .+... .-.++.+.|..+++++.. .|.
T Consensus 5 ~~~~G~~l~~~~C~~CHg~~g~g~-~~~p~l~~~---------------~~~~~~~~~~~~~~l~~~i~~g~~----~Mp 64 (91)
T 1ls9_A 5 LLADGKKVFAGNCAACHLGGNNSV-LADKTLKKD---------------AIEKYLEGGLTLEAIKYQVNNGKG----AMP 64 (91)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSHH---------------HHHHHSTTCSCHHHHHHHHHHCBT----TBC
T ss_pred HHHHHHHHHHHHhHHhCCCCCCCC-CCCCCCCch---------------hHHHhccCCCCHHHHHHHHHcCcC----CCc
Confidence 467899999999999999875432 223444311 00000 001257788888987752 222
Q ss_pred CCCCCCCHHHHHHHHHHHhhc
Q psy14949 81 VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl 101 (102)
+|...||++|+++|++||+++
T Consensus 65 ~~~~~ls~~ei~~l~~yl~~~ 85 (91)
T 1ls9_A 65 AWADRLDEDDIEAVSNYVYDQ 85 (91)
T ss_dssp CCTTTSCHHHHHHHHHHHHHH
T ss_pred chhhhCCHHHHHHHHHHHHHh
Confidence 566678999999999999986
No 49
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=99.67 E-value=5.4e-17 Score=93.30 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=52.8
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV 81 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~ 81 (102)
++++|++||+.+|++||+.++. ..+|.... ..+.+...+. .+.+.|...++++... |.+
T Consensus 18 ~~~~G~~ly~~~Ca~CHg~~g~---~~~p~~~~-------------~~~~l~~~~~-~~~~~l~~~i~~G~~~----MP~ 76 (99)
T 3dp5_A 18 PNSGGGELFATHCAGCHPQGGN---TVHPEKTL-------------ARARREANGI-RTVRDVAAYIRNPGPG----MPA 76 (99)
T ss_dssp CCCCHHHHHHHHTTTTSGGGCC---SSSTTCCC-------------CHHHHHHTTC-CSHHHHHHHTTSCCTT----SCC
T ss_pred cHHHHHHHHHHHHHHhCCCCCC---CCCCCCcc-------------ChHHHHhcCc-cCHHHHHHHHHcCCCC----CCC
Confidence 3567999999999999998742 22331110 0112222221 4677899999987532 225
Q ss_pred CCC-CCCHHHHHHHHHHHhhcC
Q psy14949 82 FPG-LRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 82 ~~~-~ls~~e~~~l~~yl~sl~ 102 (102)
|.. .||++||++|++||++.+
T Consensus 77 ~~~~~Lsd~ei~~l~~Yi~~~~ 98 (99)
T 3dp5_A 77 FGEAMIPPADALKIGEYVVASF 98 (99)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHhC
Confidence 766 689999999999998753
No 50
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=99.67 E-value=2.1e-16 Score=98.82 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=58.9
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM- 80 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m- 80 (102)
++++|++||..+|++||+.++.| ..+|+|.+..... . ..++.+.|..+|++++. ..|
T Consensus 47 ~~~~G~~lf~~~Ca~CHg~~g~G--~~gP~L~~~~~~~---------~-------~~~~~~~l~~~i~~G~~----~~Mp 104 (170)
T 2d0w_A 47 CLPKGEEIYLESCSGCHGHIGEG--KVGPGLNDSYWTY---------P-------KNTTDKGLFETIFGGAN----GMMG 104 (170)
T ss_dssp GHHHHHHHHHHHTHHHHCTTSCC--SSSCCSSSSCCSS---------G-------GGGSHHHHHHHHHHCCS----TTCC
T ss_pred HHHHHHHHHHhhhHHhCCCCCCC--CCCCCCccchhhc---------c-------ccCCHHHHHHHHHcCCC----CCCC
Confidence 46789999999999999998654 3468887642111 0 13467889999998762 245
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+|...||++|+++|++||++++
T Consensus 105 ~~~~~Ls~~ei~~l~aYl~sl~ 126 (170)
T 2d0w_A 105 PHGQDLELDNMLKLIAWIRHIQ 126 (170)
T ss_dssp CCTTTSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHcc
Confidence 5766789999999999999874
No 51
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=99.67 E-value=1.3e-17 Score=93.43 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=51.4
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
++++.|++||.++|++||+.++.|.. ..|++.+. ...+ ..+.+.+...++++.. .|
T Consensus 7 ~~~~~G~~l~~~~C~~CHg~~~~g~~-~~~~l~~~-------------~~~~-----~~~~~~~~~~i~~G~~-----~M 62 (87)
T 2zon_G 7 QLDPAGEKLYRSACVVCHASGVANAP-KLGDKQAW-------------APFL-----AQGADALLATVLKGKG-----AM 62 (87)
T ss_dssp CCCHHHHHHHHHTTHHHHTTTGGGCC-CTTCHHHH-------------HHHH-----HHCHHHHHHHHHHCBT-----TB
T ss_pred hhhhHHHHHHHHHhHHHcCCCCCCCC-CCCCHHHH-------------HHHH-----hcCHHHHHHHHHcCcC-----CC
Confidence 46789999999999999998854321 12222210 0000 1135667777777653 34
Q ss_pred -CCCC-CCCHHHHHHHHHHHhhcC
Q psy14949 81 -VFPG-LRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 -~~~~-~ls~~e~~~l~~yl~sl~ 102 (102)
+|.. .||++|+++|++||++++
T Consensus 63 p~~~~~~ls~~ei~~l~~yl~~~~ 86 (87)
T 2zon_G 63 PPRGGTAADEATLRAAVAYMMDAA 86 (87)
T ss_dssp CGGGGCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhc
Confidence 5655 679999999999999864
No 52
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=99.64 E-value=7.7e-17 Score=89.42 Aligned_cols=78 Identities=15% Similarity=0.297 Sum_probs=49.5
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV 81 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~ 81 (102)
+++.|++||..+|++||+.++.| +|.+..... +.+.+. .+.+.|...++++...|| +
T Consensus 2 ~~~~G~~ly~~~Ca~CHg~~~~g----~p~~~~~~~----------~~~~l~-----~~~~~l~~~i~~G~~~Mp----~ 58 (81)
T 1kx2_A 2 DLQDAEAIYNKACTVCHSMGVAG----APKSHNTAD----------WEPRLA-----KGVDNLVKSVKTGLNAMP----P 58 (81)
T ss_dssp CCSCHHHHHHHSTTSSTTTTGGG----CCCTTCSTT----------THHHHT-----TCSTTHHHHHHHTCTTSC----G
T ss_pred ccccHHHHHHHHHHHHcCCCCCC----CCCCCChhh----------hhhhhh-----cCHHHHHHHHHhCcCCCC----C
Confidence 46789999999999999976432 344433211 011111 023456666776653222 4
Q ss_pred CCC--CCCHHHHHHHHHHHhhcC
Q psy14949 82 FPG--LRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 82 ~~~--~ls~~e~~~l~~yl~sl~ 102 (102)
|.. .||++|+++|++||++++
T Consensus 59 ~~~~~~Lsd~ei~~l~~Yi~~~~ 81 (81)
T 1kx2_A 59 GGMCTDCTDEDYKAAIEFMSKAK 81 (81)
T ss_dssp GGGCSSCCHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC
Confidence 533 679999999999999875
No 53
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=99.64 E-value=5.5e-17 Score=97.46 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=56.5
Q ss_pred HhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC-------CC
Q psy14949 4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY-------IP 76 (102)
Q Consensus 4 ~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~ 76 (102)
++|+.||.. |++||+.++.|....+|+|.+...... ....+.++|...|.++... ..
T Consensus 2 ~~G~~ly~~-Ca~CHg~~g~G~~~~~P~L~~~~~~~~---------------~~~~~~~~l~~~i~~g~~g~~~~~g~~~ 65 (131)
T 1c52_A 2 ADGAKIYAQ-CAGCHQQNGQGIPGAFPPLAGHVAEIL---------------AKEGGREYLILVLLYGLQGQIEVKGMKY 65 (131)
T ss_dssp CCHHHHTHH-HHHHHCTTSCCBTTTBCCCTTHHHHHH---------------TSTTHHHHHHHHHHHCEEEEEEETTEEE
T ss_pred CcHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCccccc---------------cccCCHHHHHHHHHhcccccccccCCcc
Confidence 369999999 999999997765456777766321000 0012467888888876521 11
Q ss_pred CCccC-CCCCCCHHHHHHHHHHHhhcC
Q psy14949 77 GTKMV-FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 77 ~~~m~-~~~~ls~~e~~~l~~yl~sl~ 102 (102)
...|| |. .||++||++|++||++++
T Consensus 66 ~~~MP~~~-~Lsd~ei~~l~~Yl~~~~ 91 (131)
T 1c52_A 66 NGVMSSFA-QLKDEEIAAVLNHIATAW 91 (131)
T ss_dssp EEEECCCT-TSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcc-cCCHHHHHHHHHHHHHHc
Confidence 34565 55 779999999999999874
No 54
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=99.61 E-value=4.5e-16 Score=96.55 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=52.6
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhc-CccccHHHHHHHHhCCCCC------
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK-GITWSASTLDIYLQNPKKY------ 74 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~------ 74 (102)
++++|++||..+|++||+.++.+ .+|..... .+.+... ....+.+.|..++++++.+
T Consensus 51 ~~~~G~~lf~~~Ca~CHg~~g~g---~~p~~~l~-------------~~~l~g~~p~~~~~~~l~~~l~~~~~~~g~~~~ 114 (163)
T 1w5c_T 51 QYLEGKRLFQYACASCHVGGITK---TNPSLDLR-------------TETLALATPPRDNIEGLVDYMKNPTTYDGEQEI 114 (163)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCS---SSTTSCCC-------------HHHHHTSSSCCSSHHHHHHHHHSCBCTTSSSBC
T ss_pred HHHHHHHHHHHhhHHhCCCCCCC---CCCCcCCC-------------chhhccCCCCcccHHHHHHHHhCccccccchhh
Confidence 46789999999999999977533 22321100 0011000 0022467899999987541
Q ss_pred -------CCCCccC-CCCCCCHHHHHHHHHHHhhc
Q psy14949 75 -------IPGTKMV-FPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 75 -------~~~~~m~-~~~~ls~~e~~~l~~yl~sl 101 (102)
.....|| | ..||++|+++|++||+++
T Consensus 115 ~~~~~~~~~~~~Mp~~-~~Lsd~ei~~laaYl~sl 148 (163)
T 1w5c_T 115 AEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVE 148 (163)
T ss_dssp TTTSCCSTTTTTSGGG-TTCCHHHHHHHHHHHHHH
T ss_pred hhccccccccCcCCCC-CCCCHHHHHHHHHHHHHc
Confidence 1124565 5 567999999999999886
No 55
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=99.40 E-value=5.1e-17 Score=111.11 Aligned_cols=87 Identities=29% Similarity=0.514 Sum_probs=66.7
Q ss_pred HhHHHHHHHhcccccCCCCCCC-CCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC-
Q psy14949 4 ENGKKIFTRACAQCHTANEGGA-NKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV- 81 (102)
Q Consensus 4 ~~G~~lf~~~C~~CH~~~~~g~-~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~- 81 (102)
++|+++|+++|++||+.++.|. ...+|+|.++..+.... .+ ...++.++|..++++|+...+++.||
T Consensus 237 ~~G~~lf~~~Ca~CHg~~g~G~~~~~gP~L~gi~~r~~~~-~G----------~~~~~~~~L~~~I~~g~~~~~~~~MP~ 305 (337)
T 2yev_B 237 ERGQQVFQQNCAACHGVARSMPPAVIGPELGLWGNRTSLG-AG----------IVENTPENLKAWIRDPAGMKPGVKMPG 305 (337)
Confidence 6899999999999999987643 35789998865443211 00 01346789999999998777788886
Q ss_pred CCCCCCHHHHHHHHHHHhhcC
Q psy14949 82 FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+ ..||++|+++|++||++|+
T Consensus 306 ~-~~LsdeEi~aL~aYL~sL~ 325 (337)
T 2yev_B 306 F-PQLSEEDLDALVRYLEGLK 325 (337)
Confidence 6 6679999999999999874
No 56
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=99.60 E-value=4.7e-16 Score=97.99 Aligned_cols=81 Identities=28% Similarity=0.411 Sum_probs=56.9
Q ss_pred cHHhHHHHHHH--------hcccccCCCCCCCCC-CCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCC
Q psy14949 2 SVENGKKIFTR--------ACAQCHTANEGGANK-VGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPK 72 (102)
Q Consensus 2 d~~~G~~lf~~--------~C~~CH~~~~~g~~~-~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 72 (102)
++++|++||.. +|++||+.++.|... .+|+|.+.. ..|..+.|..|....+
T Consensus 99 ~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g~~~~~~P~L~g~~--------------------~~~~~~~l~~~~~g~~ 158 (190)
T 1m70_A 99 LAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQH--------------------AAYTAKQLTDFREGNR 158 (190)
T ss_dssp HHHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGGGTBCCCTTCC--------------------HHHHHHHHHHHHHTSC
T ss_pred chhhHHHHHhCCCcccCCcchhhcCCCCCCCCCCCCCCCcCCCC--------------------HHHHHHHHHHHHhCCC
Confidence 35789999998 899999998765433 467776532 1223456666665444
Q ss_pred CCCCCC-ccC-CCCCCCHHHHHHHHHHHhhcC
Q psy14949 73 KYIPGT-KMV-FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 73 ~~~~~~-~m~-~~~~ls~~e~~~l~~yl~sl~ 102 (102)
...+.. .|| |...||++|+++|++||++|+
T Consensus 159 ~~~~~~~~Mp~~~~~Ls~~ei~~l~~Yl~sl~ 190 (190)
T 1m70_A 159 TNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH 190 (190)
T ss_dssp CTTTTTCHHHHHHTTCCHHHHHHHHHHHHTCC
T ss_pred CCCCccccHHHHHHhCCHHHHHHHHHHHHhCc
Confidence 333333 675 666789999999999999985
No 57
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.60 E-value=1.7e-15 Score=102.48 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=59.0
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCC-CCCccC-CcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCc
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKV-GPNLFG-VVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTK 79 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~-gp~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 79 (102)
++++|+++|..+|++||+.++.|.... +|+|.+ ..... ..+.+.|.+.+++++ ++.|
T Consensus 221 ~~~~G~~lf~~~Ca~CHg~~g~G~~~~~~P~L~~~~~~~~------------------~~~~~~l~~~i~~g~---~g~M 279 (311)
T 3mk7_C 221 DLSAGKNVYAQTCAVCHGQGGEGMAALGAPKLNSAAGWIY------------------GSSLGQLQQTIRHGR---NGQM 279 (311)
T ss_dssp CHHHHHHHHHHTTHHHHCTTSCCBTTTTBCCSSCGGGCSS------------------CCSHHHHHHHHHHCB---CCEE
T ss_pred cchhhHHHHhhhHHhcCCCCCCCCcccCCCCCCcchhhhc------------------cCCHHHHHHHHHhCc---cccC
Confidence 567899999999999999997665444 688876 21110 114678888888875 2333
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 80 MVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 80 m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+++...||++|+++|++||++|+
T Consensus 280 P~~~~~Ls~~ei~~laaYl~sl~ 302 (311)
T 3mk7_C 280 PAQQQYLGDDKVHLLAAYVYSLS 302 (311)
T ss_dssp CCCTTTTHHHHHHHHHHHHHHHC
T ss_pred cccccCCCHHHHHHHHHHHHHcC
Confidence 35767789999999999999874
No 58
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=99.59 E-value=3.7e-16 Score=87.19 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=47.5
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV 81 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~ 81 (102)
.+..|++||..+|++||+.++.| +|.+...... .+.+.. ....+.+...+.++... |++
T Consensus 3 ~~~~G~~ly~~~Ca~CHg~~~~G----~p~~~~~~~~----------~~~l~~---~~~~~~l~~~i~~G~~~----MP~ 61 (83)
T 1cc5_A 3 GARSGDDVVAKYCNACHGTGLLN----APKVGDSAAW----------KTRADA---KGGLDGLLAQSLSGLNA----MPP 61 (83)
T ss_dssp CSSCSHHHHHHTTHHHHTTTTTT----CCCTTCHHHH----------HHHHHH---HTSSTTTHHHHHHCBTT----BCS
T ss_pred hhHHHHHHHHHHHHHHCcCCCCC----CCCCCCHHHH----------HHHhhc---ccCHHHHHHHHHcCccC----CCC
Confidence 45689999999999999876432 3444321100 000000 00123455666666532 225
Q ss_pred CCC--CCCHHHHHHHHHHHhhc
Q psy14949 82 FPG--LRKEKDREDLIAYLSTL 101 (102)
Q Consensus 82 ~~~--~ls~~e~~~l~~yl~sl 101 (102)
|.. .||++|+++|++||+++
T Consensus 62 ~~~~~~Lsd~ei~~v~~yi~~~ 83 (83)
T 1cc5_A 62 KGTCADCSDDELKAAIGKMSGL 83 (83)
T ss_dssp SSSCSSCCHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhC
Confidence 655 57999999999999875
No 59
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=99.59 E-value=7.2e-16 Score=84.90 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=49.9
Q ss_pred hHHHHHHH----hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 5 NGKKIFTR----ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 5 ~G~~lf~~----~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
.|++||.+ +|++||+.++.+ +|.|....... .. ..+.+.+...++++.. .|+
T Consensus 1 ~G~~ly~~g~~~~C~~CHg~~g~g----~P~l~~~~~~~--------------~~--~~~~~~l~~~i~~G~~----~Mp 56 (78)
T 1gks_A 1 DGESIYINGTAPTCSSCHDRGVAG----APELNAPEDWA--------------DR--PSSVDELVESTLAGKG----AMP 56 (78)
T ss_dssp CHHHHHHTSSSSCSHHHHTTTGGG----CCCTTCHHHHH--------------TS--CCCHHHHHHHHHHCBT----TBC
T ss_pred CHHHHHhhccccchhhhCCCCCCC----CCCCCCHHHhh--------------hc--cCCHHHHHHHHHcCCC----CCC
Confidence 48999997 899999987542 46654321000 00 0146678888887652 233
Q ss_pred CCCCCCCHHHHHHHHHHHhhc
Q psy14949 81 VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl 101 (102)
+|...||++||++|++||+++
T Consensus 57 ~~~~~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 57 AYDGRADREDLVKAIEYMLST 77 (78)
T ss_dssp CCBTTBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhh
Confidence 566678999999999999985
No 60
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=99.59 E-value=1.2e-15 Score=92.05 Aligned_cols=83 Identities=23% Similarity=0.267 Sum_probs=52.5
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCc-cccHHHHHHHHhCCCCCC-----
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGI-TWSASTLDIYLQNPKKYI----- 75 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~----- 75 (102)
++++|++||..+|++||+.++.+... .|.+. .+.+..... .++.+.|..+|++|....
T Consensus 25 ~~~~G~~ly~~~Ca~CHg~~g~g~~~-~~~l~---------------~~~l~~~~p~~~~~~~l~~~l~~p~~~~~~~~~ 88 (137)
T 1mz4_A 25 QYLEGKRLFQYACASCHVGGITKTNP-SLDLR---------------TETLALATPPRDNIEGLVDYMKNPTTYDGEQEI 88 (137)
T ss_dssp HHHHHHHHHHHHTHHHHGGGCCTTCG-GGCCC---------------HHHHHTSSSCCSSHHHHHHHHHSCBCTTSSSBC
T ss_pred HHHHHHHHHHhhhHHhcCCCCCCCCC-Ccccc---------------ccccccCCCchhHHHHHHHHHhCchhhcccchh
Confidence 46789999999999999987543211 11110 001111001 234778999999864321
Q ss_pred --------CCCccC-CCCCCCHHHHHHHHHHHhhc
Q psy14949 76 --------PGTKMV-FPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 76 --------~~~~m~-~~~~ls~~e~~~l~~yl~sl 101 (102)
+...|| | ..||++||++|++||+++
T Consensus 89 ~~~~~~~~~~~~MP~~-~~Lsd~ei~alaaYl~~~ 122 (137)
T 1mz4_A 89 AEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVE 122 (137)
T ss_dssp TTTSCCGGGTTTSGGG-TTCCHHHHHHHHHHHHHH
T ss_pred hhcccccccCCCCCCC-CCCCHHHHHHHHHHHHHc
Confidence 234574 6 447999999999999875
No 61
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.57 E-value=1.3e-15 Score=111.71 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=61.1
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV 81 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~ 81 (102)
++++|+++|+++|++||+.++.+....+|+|.++.. ++.+.|..+|+++....+ .|++
T Consensus 592 ~~~~G~~l~~~~C~~CHg~~g~g~~~~~P~L~~~~~---------------------~~~~~l~~~i~~g~~~~~-~Mp~ 649 (677)
T 1kb0_A 592 KVEAGTMLYVANCVFCHGVPGVDRGGNIPNLGYMDA---------------------SYIENLPNFVFKGPAMVR-GMPD 649 (677)
T ss_dssp GHHHHHHHHHHHTHHHHCSTTTSCCSSSCCGGGSCH---------------------HHHHTHHHHHSSCTTGGG-TCCC
T ss_pred hHHHHHHHHhhhhhhhCCCCCcCCCCCCCCccccCc---------------------ccHHHHHHHHHcCCCCCC-CCCc
Confidence 467899999999999999998765567888876431 246789999998875432 2335
Q ss_pred CCCCCCHHHHHHHHHHHhhc
Q psy14949 82 FPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~sl 101 (102)
|...||++||++|++||++|
T Consensus 650 ~~~~ls~~ei~~l~~Yl~~l 669 (677)
T 1kb0_A 650 FTGKLSGDDVESLKAFIQGT 669 (677)
T ss_dssp CTTTSCTTHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHhc
Confidence 77768999999999999986
No 62
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=99.55 E-value=1.5e-15 Score=95.21 Aligned_cols=76 Identities=28% Similarity=0.431 Sum_probs=51.6
Q ss_pred cHHhHHHHHHH--------hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC
Q psy14949 2 SVENGKKIFTR--------ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK 73 (102)
Q Consensus 2 d~~~G~~lf~~--------~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (102)
++++|++||.. +|++||+.++.+ ...+|+|.+... .+....|..+....+
T Consensus 99 ~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g-~~~~P~L~~~~~--------------------~~~~~~l~~~~~g~~- 156 (183)
T 1h1o_A 99 GAKEGKAIFNQGVTNEQIPACMECHGSDGQG-AGPFPRLAGQRY--------------------GYIIQQLTYFHNGTR- 156 (183)
T ss_dssp THHHHHHHHHHCBGGGTBCCTHHHHCTTSCC-BTTBCCCTTCCH--------------------HHHHHHHHHHHHTSS-
T ss_pred hHHhHHHHHHcCCcccCCCcchhhCCCCCCC-CCCCCCCCCCCH--------------------HHHHHHHHHHHcCCC-
Confidence 46789999998 899999998765 445677765310 112334444433222
Q ss_pred CCCCCcc-CCCCCCCHHHHHHHHHHHhhc
Q psy14949 74 YIPGTKM-VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 74 ~~~~~~m-~~~~~ls~~e~~~l~~yl~sl 101 (102)
++..| +|...||++|+++|++||++|
T Consensus 157 --~~~~Mp~~~~~Ls~~ei~~l~~yl~sl 183 (183)
T 1h1o_A 157 --VNTLMNQIAKNITVAQMKDVAAYLSSL 183 (183)
T ss_dssp --CCHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred --CCcchHHHHHhCCHHHHHHHHHHHHhC
Confidence 22456 466667999999999999986
No 63
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=99.55 E-value=6.9e-15 Score=94.46 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=53.4
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHH-HHHHHHhCCCCCCCCCcc
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS-TLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~m 80 (102)
++++|++||.++|++||+.++.| ...+|+|.+........ ......+..|... .+..+++ ..|+
T Consensus 34 ~~~~G~~Ly~~~Ca~CHG~~G~G-~~~~P~L~g~~~~l~~~-------~~~~~~g~~~~~~~~l~~~~~-------~~MP 98 (205)
T 2xts_B 34 DVATGDALFADNCASCHGDFAEG-LDSWPVLAGGDGSLTDP-------RPVKTIGSYWPYLSTVYDYVH-------RSMP 98 (205)
T ss_dssp EHHHHHHHHHHHTHHHHCTTSSC-STTSCCCSCCTTCTTSS-------SCCCCTTTTCCCHHHHHHHHH-------HHCS
T ss_pred hHHHHHHHHHhhhHHhCCCCCCC-CCCCCCccCCccccccc-------chhhhhccccchhHHHhccCc-------CCCC
Confidence 56899999999999999998754 33468887643221110 0011123334332 3444433 1233
Q ss_pred -CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 81 -VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 -~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+|...||++|+++|++||++++
T Consensus 99 ~~~~~~LsdeEi~aL~aYl~sl~ 121 (205)
T 2xts_B 99 FGSAQTLSVDDTYAITAFLLYSN 121 (205)
T ss_dssp TTSCSCCCHHHHHHHHHHHHHHT
T ss_pred cccccCCCHHHHHHHHHHHHhcc
Confidence 4556789999999999999864
No 64
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.50 E-value=7e-15 Score=103.27 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=56.4
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC---CC--
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY---IP-- 76 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~-- 76 (102)
++++|+++|.++|++||+.++.|....+|+|.+.. +. ..+.+.+...++++... ..
T Consensus 338 ~~~~G~~ly~~~Ca~CHg~~g~g~~~~~P~L~~~~---------~~----------~~~~~~~~~~i~~G~~~~~~~~g~ 398 (442)
T 2zoo_A 338 QIRFGQRVYEANCMACHQANGEGIPGAFPPLAKSD---------YL----------NNNPLLGVNAIIKGLSGPIKVNNV 398 (442)
T ss_dssp HHHHHHHHHHHHTHHHHCTTSCCBTTTBCCCTTCH---------HH----------HHCHHHHHHHHHHCEESCEEETTE
T ss_pred hhHHHHHHHHhhhHHhCCCCCCCCCCCCCCCCCcc---------cc----------cCCHHHHHHHHHcCccccccccCC
Confidence 35789999999999999999876555678887521 00 01345666777766531 11
Q ss_pred --CCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 77 --GTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 77 --~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
...||... ||++|+++|++||++++
T Consensus 399 ~~~~~MP~~~-Lsd~ei~~l~~Yl~~~~ 425 (442)
T 2zoo_A 399 NYNGVMPAMN-LNDEDIANVITFVLNNW 425 (442)
T ss_dssp EECCEECCCC-CCHHHHHHHHHHHHTST
T ss_pred ccCCCCCCCC-CCHHHHHHHHHHHHHhc
Confidence 25675444 79999999999999875
No 65
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.50 E-value=2.1e-14 Score=105.52 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=58.0
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc-
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM- 80 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m- 80 (102)
++++|+++|+++|+.||+.++.+ ...+|+|.+... ++.+.+...++++... ..|
T Consensus 594 ~~~~G~~ly~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~---~~Mp 648 (689)
T 1yiq_A 594 SIEAGAKLYDGYCSQCHGIHAVS-GGVLPDLRKLTP---------------------EKHQMFLGILFGGRVP---DGMP 648 (689)
T ss_dssp HHHHHHHHHHHHTHHHHCGGGCC-CSSSCCTTSCCH---------------------HHHHTHHHHHTTTTGG---GTCC
T ss_pred HHHHHHHHHhhhhhhhCCCCCcC-CCCCCCcccCCc---------------------CCHHHHHHHHHcCCCC---CCCC
Confidence 35789999999999999998765 556788765321 2466788888887643 345
Q ss_pred CCCCCCCHHHHHHHHHHHhhc
Q psy14949 81 VFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~sl 101 (102)
+|...||++||++|++||+++
T Consensus 649 ~~~~~ls~~ei~~l~~Yl~~~ 669 (689)
T 1yiq_A 649 SFADAFTPEQVDQIHQYLIKR 669 (689)
T ss_dssp CCTTTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhc
Confidence 577778999999999999986
No 66
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.49 E-value=2e-14 Score=105.20 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=57.6
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV 81 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~ 81 (102)
++++|+++|.++|++||+.++.+ ...+|+|.+... .+.+.+...++++....+ .|.+
T Consensus 579 ~~~~G~~l~~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~~~-~Mp~ 635 (668)
T 1kv9_A 579 QVQAGKQLYGQFCSVCHGMGTIS-GGLIPDLRQSSD---------------------ATREHFQQIVLQGALKPL-GMPS 635 (668)
T ss_dssp HHHHHHHHHHHHTHHHHCGGGCC-CSSSCCGGGCCH---------------------HHHHTHHHHHHHCTTGGG-TCCC
T ss_pred HHHHHHHHHhhhhHhhCcCCCcC-CCCCCCCcCCCC---------------------CCHHHHHHHHHhCCCCCC-CCCc
Confidence 35789999999999999999765 566788876321 135667777887764221 2335
Q ss_pred CCCCCCHHHHHHHHHHHhhc
Q psy14949 82 FPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~sl 101 (102)
|...||++||++|++||+++
T Consensus 636 ~~~~ls~~ei~~l~~yl~~~ 655 (668)
T 1kv9_A 636 FDDSLKPEEVEQIKLYVMSR 655 (668)
T ss_dssp CTTTCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHhc
Confidence 77778999999999999986
No 67
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.47 E-value=5.8e-14 Score=88.99 Aligned_cols=58 Identities=31% Similarity=0.623 Sum_probs=42.5
Q ss_pred HhHHHHHHH-hcccccC--CCCC------------------------CCCCCCCCccCCcCCcCCCCCCCccchhhhhcC
Q psy14949 4 ENGKKIFTR-ACAQCHT--ANEG------------------------GANKVGPNLFGVVGRQTGQAPGFDYTDANKNKG 56 (102)
Q Consensus 4 ~~G~~lf~~-~C~~CH~--~~~~------------------------g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~ 56 (102)
.+|+.+|.+ .|..||+ +.+. |...+||+|+.+ +
T Consensus 54 ~~Gr~iy~~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~p~l~Gsgr~GPDLt~v--------------------G 113 (203)
T 3mk7_B 54 LEGRDLYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARV--------------------G 113 (203)
T ss_dssp HHHHHHHHHHTGGGTCCCCCCSSHHHHHHHSSCCCGGGGTTCSSCCCCSBCSSCCCTTC--------------------T
T ss_pred HHHHHHHHHCChhhccCCCCCCCchhhhcccccccchhhhhccccccCCCCCCcChhhh--------------------h
Confidence 579999975 5999999 4432 123345555444 4
Q ss_pred ccccHHHHHHHHhCCCCCCCCCccC
Q psy14949 57 ITWSASTLDIYLQNPKKYIPGTKMV 81 (102)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~~~~m~ 81 (102)
..++.+++..+|.+|+...|++.||
T Consensus 114 ~R~s~~wl~~~I~dPq~v~PGS~MP 138 (203)
T 3mk7_B 114 GRYSDDWHRAHLYNPRNVVPESKMP 138 (203)
T ss_dssp TTSCHHHHHHHHHCHHHHSTTCCCC
T ss_pred ccCCHHHHHHHHhCccccCCCCCCC
Confidence 4456889999999999999999886
No 68
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.46 E-value=4.3e-14 Score=101.29 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=55.1
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCCCCCCCccC-CcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCcc
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFG-VVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKM 80 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m 80 (102)
++++|+++|+++|++||+.++.| ..+|+|.. ... ..+.++|..+|++++ ++ .|
T Consensus 35 ~~~~G~~l~~~~Ca~CHg~~g~g--~~~p~l~~~~~~--------------------~~~~~~l~~~i~~G~---~~-~M 88 (543)
T 1nir_A 35 EFNEAKQIYFQRCAGCHGVLRKG--ATGKPLTPDITQ--------------------QRGQQYLEALITYGT---PL-GM 88 (543)
T ss_dssp HHHHHHHHHHHHTHHHHTTTTCC--SSSSCCSHHHHH--------------------HHCHHHHHHHHHHCC---SS-SC
T ss_pred HHHHHHHHHhhhhHhhCCCCCCC--CCCCCCcchhcc--------------------cCCHHHHHHHHHcCC---CC-CC
Confidence 35789999999999999988643 33676641 110 124678999998875 23 56
Q ss_pred -CCC--CCCCHHHHHHHHHHHhhcC
Q psy14949 81 -VFP--GLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 81 -~~~--~~ls~~e~~~l~~yl~sl~ 102 (102)
+|. ..||++|+++|++||++++
T Consensus 89 p~~~~~~~ls~~ei~~l~~yl~~~~ 113 (543)
T 1nir_A 89 PNWGSSGELSKEQITLMAKYIQHTP 113 (543)
T ss_dssp CCSTTTTSSCHHHHHHHHHHTTSCC
T ss_pred CCcccccCCCHHHHHHHHHHHHhcc
Confidence 465 6789999999999999864
No 69
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=99.46 E-value=6.3e-15 Score=92.32 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=52.7
Q ss_pred cHHhHHHHHHHhcccccCCCCCCCC--CCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCC--C
Q psy14949 2 SVENGKKIFTRACAQCHTANEGGAN--KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIP--G 77 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~g~~--~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~ 77 (102)
.+..|+.+|...|++||+.+|.|.. ...|.|.+... .+....|..|....+...+ .
T Consensus 89 ~~~~g~~~~~~~Ca~CHg~~G~G~~~~~~~P~L~gq~~--------------------~yl~~~L~~~~~g~r~~~~~~~ 148 (174)
T 3vrd_A 89 LVAKGTKLHDKYCEKCHVESGKPLADQDEYHILAGQWT--------------------PYLRYAIEDFRAERRPMEKKMA 148 (174)
T ss_dssp GHHHHHHHHHHHTTTTSGGGGCCCTTCSSCCCCTTSCH--------------------HHHHHHHHHHHTTSSCCCHHHH
T ss_pred hhccchhhhcchhHhhcCcCCCCCCCCCCCCccCCCCH--------------------HHHHHHHHHHHcCCcCCCCccc
Confidence 3568999999999999999876532 22455544321 1123455555443332221 1
Q ss_pred Ccc-CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 78 TKM-VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 78 ~~m-~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
..| .+...|||+||++|++||.|++
T Consensus 149 ~~M~~~a~~Lsd~eI~alaaY~~S~k 174 (174)
T 3vrd_A 149 SKLKELLKAEGEDGLDALFAFYASQQ 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHhhCCHHHHHHHHHHHHHcC
Confidence 245 4666789999999999999986
No 70
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.45 E-value=5.3e-14 Score=95.21 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=55.6
Q ss_pred HHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCC
Q psy14949 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVF 82 (102)
Q Consensus 3 ~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~ 82 (102)
+++|+++|.++|++||+.++.|.. .+|+|.+..... ..+.+.|...+.+++ ++.|+++
T Consensus 132 ~~~G~~lf~~~Ca~CHg~~g~g~~-g~P~L~~~~~~~------------------g~~~~~l~~~i~~G~---~~~Mp~~ 189 (311)
T 3mk7_C 132 VKMGARLFANYCSICHGSDAKGSL-GFPNLADQDWRW------------------GGDAASIKTSILNGR---IAAMPAW 189 (311)
T ss_dssp HHHHHHHHHHHTHHHHCTTSCCBT-TBCCSSSSCCSS------------------CCSHHHHHHHHHHCE---ECCBCCC
T ss_pred HHHHHHHHhhhHHHhCCCCCCCCC-CCCCCCCccccc------------------CCCHHHHHHHHHhCC---cCCCccc
Confidence 468999999999999999876433 257777532111 014678889998875 2333356
Q ss_pred CCCCCHHHHHHHHHHHhh-c
Q psy14949 83 PGLRKEKDREDLIAYLST-L 101 (102)
Q Consensus 83 ~~~ls~~e~~~l~~yl~s-l 101 (102)
...||++|+++|++||++ +
T Consensus 190 ~~~Ls~~ei~~laaYl~s~l 209 (311)
T 3mk7_C 190 GQAIGEEGVKNVAAFVRKDL 209 (311)
T ss_dssp HHHHCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHhhc
Confidence 555799999999999998 5
No 71
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.44 E-value=8.9e-14 Score=100.45 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=54.9
Q ss_pred HHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccC-
Q psy14949 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMV- 81 (102)
Q Consensus 3 ~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~- 81 (102)
+++|++||.++|++||+.++.| ..+|+|.... + ...+.++|..+|+++. ++ .||
T Consensus 54 ~~~G~~ly~~~Ca~CHg~~g~G--~~gp~L~~~~---------------~----~~~~~~~l~~~i~~G~---~~-~Mp~ 108 (567)
T 1qks_A 54 YNEANKIYFERCAGCHGVLRKG--ATGKALTPDL---------------T----RDLGFDYLQSFITYAS---PA-GMPN 108 (567)
T ss_dssp HHHHHHHHHHHTHHHHCTTSSC--SSSCCCCHHH---------------H----HHHCHHHHHHHHTTCC---CC-CCTT
T ss_pred HHHHHHHHhhhhHhhCCCCCCC--CCCCCCCchh---------------h----ccCCHHHHHHHHHhCC---CC-CCCC
Confidence 5689999999999999988643 3466664210 0 0124678999998875 33 564
Q ss_pred CC--CCCCHHHHHHHHHHHhhcC
Q psy14949 82 FP--GLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 82 ~~--~~ls~~e~~~l~~yl~sl~ 102 (102)
|. ..||++|+++|++||++++
T Consensus 109 ~~~~~~Lsd~ei~~l~~yi~~~~ 131 (567)
T 1qks_A 109 WGTSGELSAEQVDLMANYLLLDP 131 (567)
T ss_dssp TSCCCCCCHHHHHHHHHHHHSCC
T ss_pred ccccCCCCHHHHHHHHHHHhhcc
Confidence 65 6789999999999999864
No 72
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=99.42 E-value=2.8e-14 Score=89.31 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=46.2
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCC-CCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCCC-CCC
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGAN-KVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKYI-PGT 78 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~-~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 78 (102)
+++++|+.+| .+|++||+.++.+.. ..+|+|.+.. ..|..+.|..++...+... ...
T Consensus 4 ~~~~~G~~l~-~~Ca~CHg~~g~g~~~~~~P~L~~~~--------------------~~~~~~~l~~~~~g~r~~~~~~~ 62 (183)
T 1h1o_A 4 ADAPAPYRVS-SDCMVCHGMTGRDTLYPIVPRLAGQH--------------------KSYMEAQLKAYKDHSRADQNGEI 62 (183)
T ss_dssp --------CG-GGTHHHHCBTTBCCSSTTSCCCTTCC--------------------HHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ccHHHHHHHH-hHHHHhcCCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCCCCCCcch
Confidence 4678999999 899999999876543 4566665421 1233445555544333210 023
Q ss_pred ccC-CCCCCCHHHHHHHHHHHhhcC
Q psy14949 79 KMV-FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 79 ~m~-~~~~ls~~e~~~l~~yl~sl~ 102 (102)
.|+ +...|+++|+++|++||+++.
T Consensus 63 ~Mp~~~~~ls~~e~~al~~yl~~~~ 87 (183)
T 1h1o_A 63 YMWPVAQALDSAKITALADYFNAQK 87 (183)
T ss_dssp HTHHHHHTCCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 564 545679999999999999863
No 73
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=99.41 E-value=1.8e-13 Score=86.05 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=55.0
Q ss_pred CcHHhHHHHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC------C
Q psy14949 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK------Y 74 (102)
Q Consensus 1 ~d~~~G~~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 74 (102)
+|+++|++| ..+|++||+.++.+....+|+|.+.. ..|..+.|..++..... .
T Consensus 2 ~~~~~G~~l-~~~C~~CHg~~g~g~~~~~P~L~~~~--------------------~~~~~~~l~~~~~G~~~~~~~~~~ 60 (190)
T 1m70_A 2 GDAEAGQGK-VAVCGACHGVDGNSPAPNFPKLAGQG--------------------ERYLLKQLQDIKAGSTPGAPEGVG 60 (190)
T ss_dssp CCHHHHHTT-CGGGHHHHCTTSCCCCTTSCCCTTCC--------------------HHHHHHHHHHHHHHHSTTCCTTSS
T ss_pred cchhHHHHH-HhHHHhhcCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCccccccccC
Confidence 588999999 67899999998765545677776531 12345556555432210 1
Q ss_pred CCCCccC-CCCCCCHHHHHHHHHHHhhc
Q psy14949 75 IPGTKMV-FPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 75 ~~~~~m~-~~~~ls~~e~~~l~~yl~sl 101 (102)
.+...|+ +...|+++|+++|++||+++
T Consensus 61 ~~~~~Mp~~~~~ls~~e~~~l~~yl~~~ 88 (190)
T 1m70_A 61 RKVLEMTGMLDPLSDQDLEDIAAYFSSQ 88 (190)
T ss_dssp CCCGGGTTTTTTCCHHHHHHHHHHHHHS
T ss_pred CCCcchHHHHHHCCHHHHHHHHHHHHhC
Confidence 2345565 66678999999999999986
No 74
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=99.40 E-value=1.7e-13 Score=85.83 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=46.5
Q ss_pred HHHHHhcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCC-CCCCCcc-CCCCC
Q psy14949 8 KIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK-YIPGTKM-VFPGL 85 (102)
Q Consensus 8 ~lf~~~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~m-~~~~~ 85 (102)
++|..+|++||+.+|.+.....|+|.+. +.++|...|++.+. ......| ++...
T Consensus 5 ~~~a~~C~~CHg~~G~~~~~~~P~LaG~------------------------~~~~i~~~l~~~~~g~~~~~~M~~~~~~ 60 (174)
T 3vrd_A 5 EMLANNCAGCHGTRGNSAGPASPSIAQM------------------------DPAVFVEVMEQFKSGEIQSTIMGRIAKG 60 (174)
T ss_dssp HHHHGGGHHHHCGGGCCCCSSSCCCTTC------------------------CHHHHHHHHHHHHHTSSCCSSHHHHHTT
T ss_pred HHHHhhHHHhCCCcCCCCCCCCCCcCCC------------------------CHHHHHHHHHHhhcCCccccccchhhcc
Confidence 4566799999999876655566777553 23444444432221 1234456 56566
Q ss_pred CCHHHHHHHHHHHhhc
Q psy14949 86 RKEKDREDLIAYLSTL 101 (102)
Q Consensus 86 ls~~e~~~l~~yl~sl 101 (102)
||++||++|++||.++
T Consensus 61 Ls~~di~~la~Y~~s~ 76 (174)
T 3vrd_A 61 YSTADFQKMAEYFKQQ 76 (174)
T ss_dssp SCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHhhhhcc
Confidence 7999999999999886
No 75
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=99.07 E-value=5.1e-10 Score=76.27 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=51.7
Q ss_pred HHhHHHHHHH-hcccccCCCCCCCCC---CC-CCc--------cCCc------------CCcCCCCCCCccchhhhhcCc
Q psy14949 3 VENGKKIFTR-ACAQCHTANEGGANK---VG-PNL--------FGVV------------GRQTGQAPGFDYTDANKNKGI 57 (102)
Q Consensus 3 ~~~G~~lf~~-~C~~CH~~~~~g~~~---~g-p~l--------~~~~------------~~~~~~~~~~~~~~~~~~~~~ 57 (102)
..+|++||.. +|++||+....+... +| |.. .+.. ...+.+..+...+..+.+.|.
T Consensus 188 ~~~G~~lF~~~~Ca~CH~~~~~~~~~~~~~G~~~~~~~~~~~~~d~G~~~~t~~~~d~~~fktPsLrnV~~taPY~HdG~ 267 (328)
T 1zzh_A 188 EKAGLKLFIDTGCAACHNGINIGGNGYYPFGVVEKPGAEVLPAGDKGRFAVTATADDEYVFRAGPLRNIALTAPYFHSGK 267 (328)
T ss_dssp HHHHHHHHHHHTGGGTSCBTTTSCSCEESEEEEECCC----------CEEEEECSSTTEEEECCCCTTGGGSCSBTTTTC
T ss_pred HHHHHHHHhcCCccccCCCcccCcchhhhcCCCCcccccccccccccchhcccchhhcCCccCcchhchhccCccccCCc
Confidence 4679999997 799999865432211 11 000 0000 011111222222333445666
Q ss_pred cccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 58 TWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
.++.+.+..+..... +...||++|+.+|++||++|.
T Consensus 268 ~~tL~evv~~y~~~~---------~~~~Ls~~E~~~LvaFL~tLt 303 (328)
T 1zzh_A 268 VWDLREAVSVMANSQ---------LGATLDDTQVDQITAFLGTLT 303 (328)
T ss_dssp BCCHHHHHHHHHSST---------TSCCCCHHHHHHHHHHHGGGC
T ss_pred cCCHHHHHHHhhccc---------cCCCCCHHHHHHHHHHHHHcC
Confidence 777777777765421 123469999999999999974
No 76
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=98.99 E-value=1.3e-09 Score=74.23 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=29.2
Q ss_pred hhhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 51 ANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 51 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
++.+.|..++.+.+..+.... .+ ...||++|+.+|++||++|.
T Consensus 258 PY~HdG~~~tL~evv~~~~~~-------~~--~~~Ls~~e~~~LvAFL~sLt 300 (326)
T 1nml_A 258 PYFHSGAVWSLEEAVAVMGTA-------QL--GTELNNDEVKSIVAFLKTLT 300 (326)
T ss_dssp SBTTTCCBCCHHHHHHHTCCT-------TT--TCCCCHHHHHHHHHHHGGGC
T ss_pred ccccCCCcCCHHHHHHHhhhh-------cc--CCCCCHHHHHHHHHHHHHcC
Confidence 344666777777777664321 11 13469999999999999973
No 77
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=98.97 E-value=5.4e-10 Score=76.02 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=27.6
Q ss_pred hhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 52 NKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 52 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+.+.|..++.+....+..... +...||++|+.+|++||++|.
T Consensus 259 Y~HdG~~~tL~evv~~y~~~~---------~~~~Ls~~E~~~LvaFL~tLt 300 (323)
T 2vhd_A 259 YFHSGQVWELKDAVAIMGNAQ---------LGKQLAPDDVENIVAFLHSLS 300 (323)
T ss_dssp BTTTTCBCCHHHHHHHHHHHH---------HCCCCCHHHHHHHHHHHHTTC
T ss_pred cccCCccCCHHHHHHHHhhcc---------cCCCCCHHHHHHHHHHHHHcC
Confidence 334555666666666553211 123469999999999999984
No 78
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=98.96 E-value=8.1e-10 Score=75.56 Aligned_cols=91 Identities=18% Similarity=0.286 Sum_probs=50.7
Q ss_pred HHhHHHHHHH-hcccccCCCCCCCCC---CCCC---------ccCCc------------CCcCCCCCCCccchhhhhcCc
Q psy14949 3 VENGKKIFTR-ACAQCHTANEGGANK---VGPN---------LFGVV------------GRQTGQAPGFDYTDANKNKGI 57 (102)
Q Consensus 3 ~~~G~~lf~~-~C~~CH~~~~~g~~~---~gp~---------l~~~~------------~~~~~~~~~~~~~~~~~~~~~ 57 (102)
..+|++||.. +|++||+....++.. +|-. ..+.. ..++.+..+...+.++.+.|.
T Consensus 199 ~~~G~~lF~~~~Ca~CH~~~~~t~~~f~~~G~~~~~~~~~~~~~D~Gr~~~t~~~~d~~~fktPsLRnV~~taPY~HdG~ 278 (338)
T 2c1v_A 199 EKRGLQAFMETGCTACHYGVNFGGQDYHPFGLIAKPGAEVLPAGDTGRFEVTRTTDDEYVFRAAPLRNVALTAPYFHSGV 278 (338)
T ss_dssp HHHHHHHHHHHTGGGTSCBTTTSCSSEEETTSSSCCCTTTSCTTCCBTHHHHCCGGGTTEEECCCCTTGGGSCSBTTTTC
T ss_pred HHHHHHHHhCCCccccCCCcccCcchhhhcCCCCCcccccccccccchhhcCccccccccccCCcccchhcCCccccCCc
Confidence 3579999997 799999854322111 1100 00000 011112222223333446666
Q ss_pred cccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 58 TWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
.++.+.+..+.... .+ ...||++|+.+|++||++|.
T Consensus 279 ~~tL~evv~~y~~~-------~~--~~~Ls~~E~~~LvaFL~sLt 314 (338)
T 2c1v_A 279 VWELAEAVKIMSSA-------QI--GTELTDQQAEDITAFLGTLT 314 (338)
T ss_dssp BCCHHHHHHHHHHH-------HT--CCCCCHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHhh-------cc--cCCCCHHHHHHHHHHHHHcC
Confidence 77777776665421 11 12469999999999999973
No 79
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=98.94 E-value=4.3e-10 Score=76.35 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=29.5
Q ss_pred hhhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 51 ANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 51 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
.+.+.|..++.+....+...+. +...||++|+.+|++||++|.
T Consensus 249 PY~HdG~~~tL~evv~~~~~~~---------~~~~Ls~~E~~~LvaFL~sLt 291 (320)
T 3o5c_A 249 PYFHDGSVWTLEEAVNTMADIQ---------LGQKLTEKETKEMVAFLNSLT 291 (320)
T ss_dssp SBTTTTCBCSHHHHHHHHHHHH---------HSCCCCHHHHHHHHHHHHTTC
T ss_pred HHHcCCCcCcHHHHHHHhcccc---------cccCCCHHHHHHHHHHHHHcC
Confidence 3345666777777776664311 123469999999999999973
No 80
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=98.91 E-value=2.1e-09 Score=72.72 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=25.6
Q ss_pred hcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 54 NKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 54 ~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+.|..++.+....+.... .+...||++|+.+|++||++|.
T Consensus 244 HdG~~~tL~e~v~~~~~~---------~~~~~Ls~~e~~~LvaFL~sLt 283 (308)
T 1iqc_A 244 HDGGAATLEQAVETMGRI---------QLNREFNKDEVSKIVAFLKTLT 283 (308)
T ss_dssp TTCCBCSHHHHHHHHHHH---------HHCCCCCHHHHHHHHHHHHTTC
T ss_pred cCCccccHHHHHHhhhcc---------ccccCCCHHHHHHHHHHHHHcC
Confidence 445555555555543311 1123469999999999999974
No 81
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=98.91 E-value=2.2e-10 Score=76.42 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=47.7
Q ss_pred HHhHHHHHHH-------hcccccCCCCCCC-CCC---CCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCC
Q psy14949 3 VENGKKIFTR-------ACAQCHTANEGGA-NKV---GPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNP 71 (102)
Q Consensus 3 ~~~G~~lf~~-------~C~~CH~~~~~g~-~~~---gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 71 (102)
++.|+.||.. +|++||+.++.+. ... .|.|....++. ....+.|...++..
T Consensus 53 v~~G~~lf~~~~g~n~~~Ca~CHg~~G~g~~~G~~a~yP~l~~~~g~v------------------~~L~~~I~~c~~~~ 114 (275)
T 3oa8_A 53 VDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFADTGKV------------------MDLEQRLLWCMETI 114 (275)
T ss_dssp HHHHHHHHTCCBTTTTBCSTTCBSSSSBTCCTTTGGGCSEEETTTTEE------------------ECHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcCCCCCCcccccCCccCCCcccChhhhCcCccccCCCH------------------HHHHHHHHHHHHcc
Confidence 5789999986 6999998765321 111 34443321110 11233455555543
Q ss_pred CCCCC-CCcc-CCCCCCCHHHHHHHHHHHhhcC
Q psy14949 72 KKYIP-GTKM-VFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 72 ~~~~~-~~~m-~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+.... ...| ++...|+++|+.+|++|+.+|.
T Consensus 115 ~g~~~~~~~M~p~~~~Ls~~di~~laaY~asls 147 (275)
T 3oa8_A 115 QGRDTKPLVAKPFSGPGRTSDMEDLVAFIANKS 147 (275)
T ss_dssp TCCCCHHHHHSCSCBTTBCCHHHHHHHHHHHTT
T ss_pred ccccccccccccccccCCHHHHHHHHHHHHHcC
Confidence 32111 1124 6666679999999999998863
No 82
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=98.89 E-value=2.2e-09 Score=73.43 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=34.7
Q ss_pred CCCCCccchhhhhcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 42 QAPGFDYTDANKNKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
+..+...+.++.+.|..++.+++.++...... . --||++|+.+|++||++|
T Consensus 266 sLRNVa~TaPYmHdG~~~tLeevv~~y~~~~~-------~--~~Lt~~E~~~LvAFL~tL 316 (341)
T 4aan_A 266 SLRNVAITMPYFHSGKVWKLKDAVKIMGSAQL-------G--ISITDADADKIVTFLNTL 316 (341)
T ss_dssp CCTTGGGSCSBSTTCCBCCHHHHHHHHHHHHH-------S--CCCCHHHHHHHHHHHHTT
T ss_pred ccccccccCCCccCCCcCCHHHHHHHHhccCc-------C--CCCCHHHHHHHHHHHHcc
Confidence 34444445555577888888877776643221 1 126999999999999997
No 83
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=98.85 E-value=1.7e-10 Score=65.23 Aligned_cols=20 Identities=30% Similarity=0.732 Sum_probs=17.8
Q ss_pred cHHhHHHHHHHhcccccCCC
Q psy14949 2 SVENGKKIFTRACAQCHTAN 21 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~ 21 (102)
++..|++||+++|.+||+.+
T Consensus 26 ~~~~g~~l~~~kC~~CHs~d 45 (92)
T 3a9f_A 26 DFDAAKKLVDVRCNKCHTLD 45 (92)
T ss_dssp CHHHHHHHHHHHSSSSSCSG
T ss_pred ChHhHHHHHHhHHHHhcCCc
Confidence 45789999999999999876
No 84
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=98.85 E-value=3.8e-09 Score=72.33 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=26.3
Q ss_pred hcCccccHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 54 NKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 54 ~~~~~~~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+.|..++.+....+...+ .+...||++|+.+|++||++|.
T Consensus 283 H~G~~~tL~~~v~~~~~~---------~~~~~Ls~~E~~~LvaFL~sLt 322 (345)
T 3hq9_A 283 HSGVVWSLKEAVAVMGSA---------QFGIKLSDDESEAIAAFLGSLT 322 (345)
T ss_dssp TTTCBCCHHHHHHHHSCG---------GGTCCCCHHHHHHHHHHHHTTC
T ss_pred cCCccccHHHHHHHcccc---------ccccCCCHHHHHHHHHHHHHhC
Confidence 445555666655555322 1234579999999999999973
No 85
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=98.80 E-value=5.3e-10 Score=74.13 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcC
Q psy14949 82 FPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~sl~ 102 (102)
....||++|+++|++||.+|.
T Consensus 232 ~~~~Ls~~ei~aLaaYv~sL~ 252 (264)
T 2c1d_A 232 ETFKAGSDDFKALELYVASRG 252 (264)
T ss_dssp CCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcc
Confidence 345579999999999998863
No 86
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=98.80 E-value=3.7e-09 Score=58.37 Aligned_cols=18 Identities=28% Similarity=0.689 Sum_probs=15.9
Q ss_pred HhHHHHHHHhcccccCCC
Q psy14949 4 ENGKKIFTRACAQCHTAN 21 (102)
Q Consensus 4 ~~G~~lf~~~C~~CH~~~ 21 (102)
..|+++|+++|++||+.+
T Consensus 19 ~~G~~l~~~~C~~CH~~~ 36 (81)
T 2blf_B 19 QPGFEAAQNNCAACHSVD 36 (81)
T ss_dssp STHHHHHHHHTTSSSCTH
T ss_pred cchHHHHHHHHHHhcCCc
Confidence 479999999999999864
No 87
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=98.79 E-value=2.6e-09 Score=70.71 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=43.3
Q ss_pred HHhHHHHHHH-------hcccccCCCCCCCCCCCCCcc-CCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhCCCCC
Q psy14949 3 VENGKKIFTR-------ACAQCHTANEGGANKVGPNLF-GVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKKY 74 (102)
Q Consensus 3 ~~~G~~lf~~-------~C~~CH~~~~~g~~~~gp~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 74 (102)
+++|++||.. .|++||+.+ .|....+|.|. ++.... +.|. ...+..++.... +++....
T Consensus 159 ~~~G~~lF~~~~g~~~~~Ca~CHg~~-~G~~~g~~~l~~~~~~~~----p~Yr-----~~~g~~~tl~~r---i~~~~~~ 225 (261)
T 1h32_A 159 WEKGREIYYTRYGQLDLSCASCHEQY-FDHYIRADHLSQGQINGF----PSYR-----LKNARLNAVHDR---FRGCIRD 225 (261)
T ss_dssp HHHHHHHHTCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCTTC----SEEE-----TTTTEEECHHHH---HHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCcccccCCCC-CCCCCCCCcCCCCcccCC----ccee-----ccCcchhhHHHH---HHHHHhc
Confidence 5689999987 599999875 22222233343 222111 1111 112223333332 2221111
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 75 IPGTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 75 ~~~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+. .....||++|+++|++||.+|.
T Consensus 226 m~----~~~~~Ls~~ei~aLaaYl~sL~ 249 (261)
T 1h32_A 226 TR----GVPFAVGSPEFVALELYVASRG 249 (261)
T ss_dssp TT----BCCCCTTCHHHHHHHHHHHHHT
T ss_pred cC----CCCCCCChHHHHHHHHHHHHhc
Confidence 11 2233468999999999999873
No 88
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=98.72 E-value=4.3e-09 Score=74.18 Aligned_cols=21 Identities=24% Similarity=0.678 Sum_probs=17.9
Q ss_pred HhHHHHHHHhcccccCCCCCC
Q psy14949 4 ENGKKIFTRACAQCHTANEGG 24 (102)
Q Consensus 4 ~~G~~lf~~~C~~CH~~~~~g 24 (102)
+.|+.||..+|++||+.++.|
T Consensus 2 a~Gk~LF~~NCAaCHGagaqG 22 (494)
T 1jmx_A 2 EQGPSLLQNKCMGCHIPEGND 22 (494)
T ss_dssp CCHHHHHHHHHBTTBCEEETT
T ss_pred chhhHHHhhhhhhhcCCCccC
Confidence 469999999999999987543
No 89
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=98.66 E-value=6.7e-09 Score=61.19 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHhhcC
Q psy14949 85 LRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~sl~ 102 (102)
-+|++|..+|++||.+++
T Consensus 103 ~cTa~EK~D~~ayL~s~~ 120 (124)
T 1e8e_A 103 DCSPSEKANFIAYLLTET 120 (124)
T ss_dssp CCCHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 358999999999999975
No 90
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=98.64 E-value=5.8e-08 Score=63.54 Aligned_cols=20 Identities=30% Similarity=0.903 Sum_probs=18.0
Q ss_pred cHHhHHHHHHHhcccccCCC
Q psy14949 2 SVENGKKIFTRACAQCHTAN 21 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~ 21 (102)
.+.+|.++|.+.|++||+.+
T Consensus 28 slqRG~qvy~~~CaaCHsl~ 47 (248)
T 3cx5_D 28 SIRRGYQVYREVCAACHSLD 47 (248)
T ss_dssp HHHHHHHHHHHTGGGTCCCT
T ss_pred hHhhhHHHHHHhhhhccCcc
Confidence 36789999999999999987
No 91
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=98.61 E-value=3.1e-09 Score=70.87 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=22.7
Q ss_pred HHhHHHHHH-------HhcccccCCCCCCCCC-CCCCccC
Q psy14949 3 VENGKKIFT-------RACAQCHTANEGGANK-VGPNLFG 34 (102)
Q Consensus 3 ~~~G~~lf~-------~~C~~CH~~~~~g~~~-~gp~l~~ 34 (102)
+++|++||. ..|++||+.+|.+... ..|.|.+
T Consensus 165 ~~~G~~lf~~r~G~~~~~Ca~CHg~~G~g~~~~~~P~L~g 204 (275)
T 3oa8_A 165 YAIGEALFFRRSSINDFSCSTCHGAAGKRIRLQALPQLDV 204 (275)
T ss_dssp HHHHHHHHHCCBTTTTBCHHHHHSSSSCEETTEECCCCSS
T ss_pred HHHHHHHHHhccCCCCCchHhhCCCcCCCCCccCCCcccc
Confidence 468999993 4699999988654322 3577764
No 92
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=98.58 E-value=3.5e-07 Score=63.24 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHhhc
Q psy14949 85 LRKEKDREDLIAYLSTL 101 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~sl 101 (102)
.||++|+.+|++||++|
T Consensus 333 ~Lt~~E~~dLVAFLkTL 349 (373)
T 3sjl_A 333 MLDDGRVDALVAFLETL 349 (373)
T ss_dssp CCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 36999999999999997
No 93
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=98.58 E-value=7e-08 Score=56.08 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=43.2
Q ss_pred cHHhHHHHHHH----------hcccccCCCCCCCCCCCCCccCCcCCcCCCCCCCccchhhhhcCccccHHHHHHHHhC-
Q psy14949 2 SVENGKKIFTR----------ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQN- 70 (102)
Q Consensus 2 d~~~G~~lf~~----------~C~~CH~~~~~g~~~~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 70 (102)
++++|+++|.+ .|++||+.+... .|-..++. .-.+..+.. +....-+...+.+|+++
T Consensus 21 ~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p~~---~g~~~tgk--~I~p~Ap~~-------np~RftD~akvekwf~rn 88 (112)
T 1dw0_A 21 DAERGRALFLSTQTGGKPDTPSCTTCHGADVTR---AGQTRTGK--EIAPLAPSA-------TPDRFTDSARVEKWLGRN 88 (112)
T ss_dssp CHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTTS---CEECTTSC--EECCSSTTT-------STTTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhcccCCCCCCcccccCCCCccc---CcccccCC--cccCcCCcc-------CccccCCHHHHHHHHHhh
Confidence 57899999932 499999876421 11111110 000011111 01112245566666653
Q ss_pred CCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 71 PKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 71 ~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
-..+ +...-|.+|..++++||.++
T Consensus 89 c~~v-------~gr~cta~EK~d~l~~l~~~ 112 (112)
T 1dw0_A 89 CNSV-------IGRDCTPGEKADLLAWLAAQ 112 (112)
T ss_dssp HHHH-------HSSCCCHHHHHHHHHHHHTC
T ss_pred hhHH-------HcccCCHHHHHHHHHHHHhC
Confidence 1111 12335899999999999875
No 94
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=98.56 E-value=7e-07 Score=58.28 Aligned_cols=21 Identities=24% Similarity=0.814 Sum_probs=18.4
Q ss_pred cHHhHHHHHHHhcccccCCCC
Q psy14949 2 SVENGKKIFTRACAQCHTANE 22 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~ 22 (102)
.+.+|.++|.+.|++||+.+.
T Consensus 25 slqRG~qvy~~~CaaCHSl~y 45 (241)
T 1pp9_D 25 SIRRGFQVYKQVCSSCHSMDY 45 (241)
T ss_dssp HHHHHHHHHHHTGGGTCCCTT
T ss_pred HHhhhHHHHHHhhhhccCccc
Confidence 367899999999999999864
No 95
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=98.52 E-value=2.6e-07 Score=60.89 Aligned_cols=21 Identities=24% Similarity=0.737 Sum_probs=18.2
Q ss_pred cHHhHHHHHHHhcccccCCCC
Q psy14949 2 SVENGKKIFTRACAQCHTANE 22 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~ 22 (102)
.+.+|.++|.+.|++||+.+.
T Consensus 46 slqRG~qVy~evCaaCHsl~~ 66 (263)
T 2yiu_B 46 QLQRGLQVYTEVCSACHGLRY 66 (263)
T ss_dssp HHHHHHHHHHHTGGGTCCCTT
T ss_pred HHHHHHHHHHHHhhccCCccc
Confidence 357899999999999999763
No 96
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=98.42 E-value=3.4e-08 Score=65.42 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHhhc
Q psy14949 85 LRKEKDREDLIAYLSTL 101 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~sl 101 (102)
.++++|+++|++|++++
T Consensus 128 ~l~~~~~~alaaY~~sl 144 (264)
T 2c1d_A 128 GVTSDNMKDMLSLISLQ 144 (264)
T ss_dssp CTTSHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHH
Confidence 35789999999999986
No 97
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=98.35 E-value=6.5e-07 Score=63.09 Aligned_cols=19 Identities=37% Similarity=0.933 Sum_probs=16.8
Q ss_pred hHHHHHHHhcccccCCCCC
Q psy14949 5 NGKKIFTRACAQCHTANEG 23 (102)
Q Consensus 5 ~G~~lf~~~C~~CH~~~~~ 23 (102)
.|++||+++|++||+.+.+
T Consensus 2 ~GkeLv~anCasCHsad~~ 20 (489)
T 1pby_A 2 TGEEVLQNACAACHVQHED 20 (489)
T ss_dssp CHHHHHHHTGGGTSCBCTT
T ss_pred ChHHHHHhhhHhhcCCCcc
Confidence 5999999999999998754
No 98
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=98.22 E-value=2.3e-07 Score=61.31 Aligned_cols=17 Identities=12% Similarity=0.174 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHhhc
Q psy14949 85 LRKEKDREDLIAYLSTL 101 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~sl 101 (102)
.++++|+++|++|+++|
T Consensus 125 ~l~~~~i~alaaY~~sl 141 (261)
T 1h32_A 125 DYIGPDMTAMVALIASV 141 (261)
T ss_dssp CTTSHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 35789999999999986
No 99
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=98.19 E-value=4.7e-06 Score=55.10 Aligned_cols=20 Identities=30% Similarity=0.856 Sum_probs=17.8
Q ss_pred cHHhHHHHHHHhcccccCCC
Q psy14949 2 SVENGKKIFTRACAQCHTAN 21 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~ 21 (102)
.+.+|.++|.+.|++||+.+
T Consensus 24 sLqRG~qVy~evCaaCHsl~ 43 (269)
T 2qjy_B 24 QLQRGLQVYTEVCAACHGMK 43 (269)
T ss_dssp HHHHHHHHHHHTGGGTCCCT
T ss_pred HHHHHHHHHHHHHhhcCCch
Confidence 36789999999999999976
No 100
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=97.56 E-value=3.1e-05 Score=50.96 Aligned_cols=20 Identities=20% Similarity=0.760 Sum_probs=17.8
Q ss_pred cHHhHHHHHHHhcccccCCC
Q psy14949 2 SVENGKKIFTRACAQCHTAN 21 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~ 21 (102)
.+.+|.++|.+.|++||+.+
T Consensus 22 sLqRG~qvy~evCa~CHsl~ 41 (258)
T 1zrt_D 22 QLRRGFQVYNEVCSACHGMK 41 (258)
T ss_dssp HHHHHHHHHHHTTTTTCCCT
T ss_pred HHHHHHHHHHHHHhhcCCch
Confidence 36789999999999999975
No 101
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=97.52 E-value=2e-05 Score=53.86 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhc
Q psy14949 88 EKDREDLIAYLSTL 101 (102)
Q Consensus 88 ~~e~~~l~~yl~sl 101 (102)
++++.+|++|++++
T Consensus 164 ~~~~~Aia~y~~sL 177 (338)
T 2c1v_A 164 DNFAAAIEQFEATL 177 (338)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 77899999999986
No 102
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=97.44 E-value=2.8e-05 Score=52.88 Aligned_cols=19 Identities=42% Similarity=0.857 Sum_probs=15.6
Q ss_pred HHhHHHHHHHh---------cccccCCC
Q psy14949 3 VENGKKIFTRA---------CAQCHTAN 21 (102)
Q Consensus 3 ~~~G~~lf~~~---------C~~CH~~~ 21 (102)
++.|+.||... |++||..+
T Consensus 31 v~lGk~LF~d~~LS~~~~~sCasCH~~~ 58 (323)
T 2vhd_A 31 RELGKKLFFDPRLSRSHVLSCNTCHNVG 58 (323)
T ss_dssp HHHHHHHHTCGGGSSSSCCCHHHHSCGG
T ss_pred HHHHHHHhcCccccCCCCcchhhcCCCc
Confidence 56899999754 99999864
No 103
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=97.40 E-value=0.00066 Score=46.22 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhc
Q psy14949 88 EKDREDLIAYLSTL 101 (102)
Q Consensus 88 ~~e~~~l~~yl~sl 101 (102)
++++.+|++|++++
T Consensus 153 ~~~~~Aiaay~~sl 166 (328)
T 1zzh_A 153 DNFALAVEAFEATL 166 (328)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHc
Confidence 67899999999986
No 104
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=97.38 E-value=2.1e-05 Score=53.10 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHhhc
Q psy14949 87 KEKDREDLIAYLSTL 101 (102)
Q Consensus 87 s~~e~~~l~~yl~sl 101 (102)
.++++.+|++|++++
T Consensus 135 ~~~~~~Aia~y~~tl 149 (308)
T 1iqc_A 135 IDRITTAIAQFEETL 149 (308)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhh
Confidence 388999999999986
No 105
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=97.29 E-value=0.0001 Score=50.51 Aligned_cols=19 Identities=37% Similarity=0.852 Sum_probs=15.9
Q ss_pred HHhHHHHHHH---------hcccccCCC
Q psy14949 3 VENGKKIFTR---------ACAQCHTAN 21 (102)
Q Consensus 3 ~~~G~~lf~~---------~C~~CH~~~ 21 (102)
++.|+.||.. .|++||..+
T Consensus 53 v~lG~~LF~d~rLS~~~~~sCasCH~~~ 80 (345)
T 3hq9_A 53 VELGKMLYFDPRLSASHLISCNTCHNVG 80 (345)
T ss_dssp HHHHHHHHHCGGGSTTSCCCHHHHSBTT
T ss_pred HHHHHHHhCCcccCCCCCCchhhcCChh
Confidence 5689999975 599999875
No 106
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=97.00 E-value=4.9e-05 Score=53.88 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=18.1
Q ss_pred cHHhHHHHHHHhcccccCCCCC
Q psy14949 2 SVENGKKIFTRACAQCHTANEG 23 (102)
Q Consensus 2 d~~~G~~lf~~~C~~CH~~~~~ 23 (102)
++++|++||..+|++||+.++.
T Consensus 88 ~va~G~eLF~~NCAaCHG~dGk 109 (494)
T 1jmx_A 88 TVEQFDTQLSETCGRCHSGARV 109 (494)
T ss_dssp CCCCCCHHHHHHHSSSSCSHHH
T ss_pred hhhhHHHHHhhhhhhcCCcccC
Confidence 3457999999999999998753
No 107
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=96.91 E-value=0.0042 Score=42.18 Aligned_cols=19 Identities=42% Similarity=0.887 Sum_probs=15.1
Q ss_pred HHhHHHHHHH---------hcccccCCC
Q psy14949 3 VENGKKIFTR---------ACAQCHTAN 21 (102)
Q Consensus 3 ~~~G~~lf~~---------~C~~CH~~~ 21 (102)
++.|+.||-. .|++||...
T Consensus 27 v~LGk~LFfD~rLS~~~~~SCasCH~p~ 54 (320)
T 3o5c_A 27 VELGKMLFFEPRLSKSGFISCNSCHNLS 54 (320)
T ss_dssp HHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred HHHHHHHhCCcccCCCCCCCccccCCcc
Confidence 4679999963 399999765
No 108
>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}
Probab=96.65 E-value=0.0031 Score=37.88 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=13.1
Q ss_pred HHHHHHHhcccccCCC
Q psy14949 6 GKKIFTRACAQCHTAN 21 (102)
Q Consensus 6 G~~lf~~~C~~CH~~~ 21 (102)
++++|.+.|++||.+-
T Consensus 16 ~~~~y~~~C~~CH~a~ 31 (139)
T 2fw5_A 16 TDPLTRTECSACHMAY 31 (139)
T ss_dssp CCHHHHHHTTSSSCCC
T ss_pred cHHHHHHHHHhccCCC
Confidence 4679999999999643
No 109
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=96.59 E-value=0.007 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=13.0
Q ss_pred HHHHHHHhcccccCCC
Q psy14949 6 GKKIFTRACAQCHTAN 21 (102)
Q Consensus 6 G~~lf~~~C~~CH~~~ 21 (102)
.+++|.+.|++||..-
T Consensus 5 ~~~~y~~~C~~CH~a~ 20 (125)
T 2fwt_A 5 TDPLTRTECSACHMAY 20 (125)
T ss_dssp CCHHHHHHTSSSSCCC
T ss_pred cHHHHHHHHHhccCCC
Confidence 4678999999999643
No 110
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=96.45 E-value=0.00067 Score=46.14 Aligned_cols=19 Identities=42% Similarity=0.801 Sum_probs=15.4
Q ss_pred HHhHHHHHHH---------hcccccCCC
Q psy14949 3 VENGKKIFTR---------ACAQCHTAN 21 (102)
Q Consensus 3 ~~~G~~lf~~---------~C~~CH~~~ 21 (102)
++.|+.||.. .|++||...
T Consensus 31 v~lGk~LF~D~~LS~~~~~sCasCH~~~ 58 (326)
T 1nml_A 31 VELGKMEFFEPRLSSSHLISCNTCHNVG 58 (326)
T ss_dssp HHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred HHHHHHHhcCcccccCCCccchhcCCcc
Confidence 5689999974 499999864
No 111
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=95.79 E-value=0.0016 Score=44.56 Aligned_cols=19 Identities=37% Similarity=0.877 Sum_probs=14.4
Q ss_pred HHhHHHHHHH---------hcccccCCC
Q psy14949 3 VENGKKIFTR---------ACAQCHTAN 21 (102)
Q Consensus 3 ~~~G~~lf~~---------~C~~CH~~~ 21 (102)
++-|+.||-. .|++||...
T Consensus 48 v~LGr~LFfD~~LS~~~~~SCASCH~~~ 75 (341)
T 4aan_A 48 VELGRMLFFDPRLSASHLISCNTCHNVG 75 (341)
T ss_dssp HHHHHHHHHCGGGSTTSCCCHHHHSBGG
T ss_pred HHHHHHHhcCcccCCCcCCCccccCCcc
Confidence 4579999962 399999643
No 112
>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}
Probab=95.45 E-value=0.062 Score=32.53 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=10.1
Q ss_pred HHHHHhcccccC
Q psy14949 8 KIFTRACAQCHT 19 (102)
Q Consensus 8 ~lf~~~C~~CH~ 19 (102)
..|.+.|++||-
T Consensus 13 ~~Y~~eCgsCH~ 24 (148)
T 3u99_A 13 AEYTAECGSCHM 24 (148)
T ss_dssp HHHHHHHSSSSC
T ss_pred HHHHHHHHhCCc
Confidence 468889999995
No 113
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=93.26 E-value=0.011 Score=41.99 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=14.9
Q ss_pred HHhHHHHHHHhcccccCCC
Q psy14949 3 VENGKKIFTRACAQCHTAN 21 (102)
Q Consensus 3 ~~~G~~lf~~~C~~CH~~~ 21 (102)
++.|..+|..+|+.||+..
T Consensus 89 ~~~ggelfr~nCA~CHn~A 107 (489)
T 1pby_A 89 DEGPDTSMTQTCGRCHSYA 107 (489)
T ss_dssp CCCSSHHHHHHHSSSSCTH
T ss_pred ccCchhhHHhhHhhhCCch
Confidence 3456789999999999743
No 114
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=88.98 E-value=0.08 Score=36.67 Aligned_cols=19 Identities=32% Similarity=0.821 Sum_probs=14.8
Q ss_pred HHhHHHHHHH---------hcccccCCC
Q psy14949 3 VENGKKIFTR---------ACAQCHTAN 21 (102)
Q Consensus 3 ~~~G~~lf~~---------~C~~CH~~~ 21 (102)
++-|+.||-. .|++||...
T Consensus 11 v~LGk~LFfD~rLS~~~~iSCaSCH~p~ 38 (373)
T 3sjl_A 11 AALGAQLFVDPALSRNATQSCATCHDPA 38 (373)
T ss_dssp HHHHHHHHTCGGGSTTSCCCHHHHSBGG
T ss_pred HHHHHHHhCCCccCCCCCcCchhhCCcc
Confidence 4679999952 499999865
No 115
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=88.23 E-value=0.24 Score=37.53 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=27.6
Q ss_pred cHHhHHHHHHH-hcccccCCCCCCCCCCCCCccCC
Q psy14949 2 SVENGKKIFTR-ACAQCHTANEGGANKVGPNLFGV 35 (102)
Q Consensus 2 d~~~G~~lf~~-~C~~CH~~~~~g~~~~gp~l~~~ 35 (102)
|+.+||++|++ .|..||++=|. +.-.||+++..
T Consensus 68 dI~~Gq~~~q~~g~m~~GSi~Gh-GaY~aPD~TAd 101 (800)
T 3ayf_A 68 TIIGGQAVFQKYGLMDYGTVLGH-GSYMGPDYTAE 101 (800)
T ss_dssp HHHHHHHHHHHTTGGGTSEETTE-ECSSSCBHHHH
T ss_pred HHHHhHHHHHHcCCcccCccccC-CcccCcchHHH
Confidence 57899999997 59999999876 46779998753
No 116
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=86.48 E-value=0.2 Score=29.63 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=19.0
Q ss_pred CCccCCC-CCCCHHHHHHHHHHHhhc
Q psy14949 77 GTKMVFP-GLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 77 ~~~m~~~-~~ls~~e~~~l~~yl~sl 101 (102)
+.|.+|. ..++++|+.+|++|+.++
T Consensus 10 g~M~~~~~~~l~~~~~~~~a~y~~~~ 35 (147)
T 2gc4_D 10 GSPLNFDDAMEEGRDTEAVKHFLETG 35 (147)
T ss_dssp CCBCCGGGSCSTTSSSHHHHHHHHHS
T ss_pred CCccccccccCCHHHHHHHHHHHHhc
Confidence 4444666 567899999999999865
No 117
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=81.38 E-value=0.52 Score=27.59 Aligned_cols=9 Identities=44% Similarity=1.195 Sum_probs=7.2
Q ss_pred HhcccccCC
Q psy14949 12 RACAQCHTA 20 (102)
Q Consensus 12 ~~C~~CH~~ 20 (102)
..|.+||..
T Consensus 104 ~~Cl~CH~~ 112 (135)
T 3b42_A 104 QRCQSCHDA 112 (135)
T ss_dssp GGGGGTSCT
T ss_pred cChHhhcCC
Confidence 479999964
No 118
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=79.34 E-value=0.58 Score=27.46 Aligned_cols=9 Identities=33% Similarity=0.966 Sum_probs=7.4
Q ss_pred HhcccccCC
Q psy14949 12 RACAQCHTA 20 (102)
Q Consensus 12 ~~C~~CH~~ 20 (102)
..|.+||..
T Consensus 103 ~~C~~CH~~ 111 (134)
T 3b47_A 103 VRCQSCHEQ 111 (134)
T ss_dssp TTGGGTSCT
T ss_pred CCchhhhCC
Confidence 369999976
No 119
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=71.80 E-value=3.7 Score=24.16 Aligned_cols=9 Identities=33% Similarity=1.065 Sum_probs=5.0
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
.|.+||...
T Consensus 57 ~ClsCH~~~ 65 (130)
T 1ogy_B 57 RCLECHRRQ 65 (130)
T ss_dssp GGGGTSCCC
T ss_pred cCcccCCcc
Confidence 566666543
No 120
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=66.28 E-value=3.8 Score=24.58 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q psy14949 82 FPGLRKEKDREDLIAYLST 100 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~s 100 (102)
|...+|++|+++|++|.+|
T Consensus 76 Y~~~fT~~El~~l~~FY~s 94 (147)
T 3oao_A 76 YTTNFTESELKDLNAFYQS 94 (147)
T ss_dssp HHHHSCHHHHHHHHHHHHS
T ss_pred HHHHCCHHHHHHHHHHHCC
Confidence 4445689999999999976
No 121
>3h34_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.60A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=66.20 E-value=1.5 Score=22.94 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=11.3
Q ss_pred HHHHHHhcccccCCC
Q psy14949 7 KKIFTRACAQCHTAN 21 (102)
Q Consensus 7 ~~lf~~~C~~CH~~~ 21 (102)
+.++.+.|.+||...
T Consensus 43 k~~~~~~C~~CH~~~ 57 (70)
T 3h34_A 43 KDYAHKTCKGCHEVR 57 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhcChhHHHhhhh
Confidence 566777899999643
No 122
>1ehj_A Cytochrome C7; multi-heme, electron transport; HET: HEC; NMR {Desulfuromonas acetoxidans} SCOP: a.138.1.1 PDB: 1f22_A* 1hh5_A* 1lm2_A* 1new_A* 2new_A* 1kwj_A* 1l3o_A*
Probab=64.15 E-value=1.7 Score=22.44 Aligned_cols=15 Identities=47% Similarity=0.837 Sum_probs=11.4
Q ss_pred HHHHH-HhcccccCCC
Q psy14949 7 KKIFT-RACAQCHTAN 21 (102)
Q Consensus 7 ~~lf~-~~C~~CH~~~ 21 (102)
+..|. ..|.+||...
T Consensus 41 ~~~~h~~~C~~CH~~~ 56 (68)
T 1ehj_A 41 KKSAHKDACKTCHKSN 56 (68)
T ss_dssp HHHHHHHSHHHHGGGT
T ss_pred HHHHhccHHHHHhccC
Confidence 56777 7899999643
No 123
>2czs_A DHC2, cytochrome C, putative; diheme, C-type cytochrome, electron transport; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=62.66 E-value=7.7 Score=20.65 Aligned_cols=9 Identities=44% Similarity=1.294 Sum_probs=7.0
Q ss_pred HHhcccccC
Q psy14949 11 TRACAQCHT 19 (102)
Q Consensus 11 ~~~C~~CH~ 19 (102)
.+.|.+||-
T Consensus 34 E~~C~~CH~ 42 (80)
T 2czs_A 34 DRQCVECHH 42 (80)
T ss_dssp HHHHTTTSC
T ss_pred Hhcchhhcc
Confidence 346999994
No 124
>3h4n_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=59.53 E-value=2.3 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.745 Sum_probs=10.4
Q ss_pred HHHHHHhcccccCC
Q psy14949 7 KKIFTRACAQCHTA 20 (102)
Q Consensus 7 ~~lf~~~C~~CH~~ 20 (102)
+.++.+.|.+||..
T Consensus 45 ~~~~~~~C~~CH~~ 58 (72)
T 3h4n_A 45 KDWAHKTCTGCHKE 58 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhcChHHHHhCc
Confidence 45566789999963
No 125
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=57.39 E-value=22 Score=20.80 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=18.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 79 KMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 79 ~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
.++|-.-||++||.+=|.||.++
T Consensus 14 tfSyLP~lt~eqI~kQI~Yll~q 36 (128)
T 1wdd_S 14 TLSYLPPLTVEDLLKQIEYLLRS 36 (128)
T ss_dssp TTTTSSCCCHHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHC
Confidence 45666667999999999998764
No 126
>3ml1_B NAPB, diheme cytochrome C NAPB; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_B*
Probab=57.28 E-value=4.8 Score=23.82 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=6.7
Q ss_pred hcccccCCCC
Q psy14949 13 ACAQCHTANE 22 (102)
Q Consensus 13 ~C~~CH~~~~ 22 (102)
.|..||-...
T Consensus 98 fCtQCHVPQa 107 (135)
T 3ml1_B 98 FCTQCHVPQA 107 (135)
T ss_dssp SGGGTCCBCB
T ss_pred eeccccCccc
Confidence 4888886543
No 127
>1oqe_K Tumor necrosis factor receptor superfamily member 13C; ligand receptor complex, immune system; 2.50A {Homo sapiens} SCOP: g.24.1.2
Probab=55.63 E-value=2.1 Score=18.51 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=7.8
Q ss_pred HhcccccCCC
Q psy14949 12 RACAQCHTAN 21 (102)
Q Consensus 12 ~~C~~CH~~~ 21 (102)
++|.+||-..
T Consensus 15 R~CVaC~Ll~ 24 (31)
T 1oqe_K 15 RHCVACGLLR 24 (31)
T ss_dssp TEEEEGGGSC
T ss_pred hcceEEEEEe
Confidence 5799999654
No 128
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=54.07 E-value=9.9 Score=16.05 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=7.9
Q ss_pred HHHHhcccccC
Q psy14949 9 IFTRACAQCHT 19 (102)
Q Consensus 9 lf~~~C~~CH~ 19 (102)
...+.|++|..
T Consensus 11 aleqkcaaceq 21 (32)
T 4g1a_A 11 ALEQKCAACEQ 21 (32)
T ss_dssp HHHHHTSSHHH
T ss_pred HHHHHHHHHHH
Confidence 34568999974
No 129
>1m0f_B GPB, scaffolding protein B; bacteriophage, cryo electron microscopy, procapsid, morphogenesis, microviridae, assembly; 16.00A {Enterobacteria phage ALPHA3} SCOP: i.6.1.1
Probab=53.22 E-value=7.3 Score=19.86 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=14.3
Q ss_pred cHHhHHHHHHHh--cccccC
Q psy14949 2 SVENGKKIFTRA--CAQCHT 19 (102)
Q Consensus 2 d~~~G~~lf~~~--C~~CH~ 19 (102)
+++.|+..|.++ |+.|--
T Consensus 14 eie~~ks~~~R~fG~A~~dd 33 (68)
T 1m0f_B 14 EIEAGKSYCSRRFGGATCDD 33 (68)
T ss_pred HHHHHHHHHHHHcCCCCcch
Confidence 467899999874 999973
No 130
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter metallireducens, heme coordination in C-type cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=50.42 E-value=7.3 Score=20.80 Aligned_cols=8 Identities=38% Similarity=1.398 Sum_probs=5.7
Q ss_pred HhcccccC
Q psy14949 12 RACAQCHT 19 (102)
Q Consensus 12 ~~C~~CH~ 19 (102)
..|.+||.
T Consensus 58 ~~C~~CH~ 65 (82)
T 1rwj_A 58 KSCGACHN 65 (82)
T ss_dssp CGGGGTTT
T ss_pred ChhHHHhC
Confidence 35888884
No 131
>1al0_B Scaffolding protein GPB; complex (virus capsid proteins), bacteriophage, procapsid, chaperone, icosahedral virus; 3.50A {Enterobacteria phage PHIX174} PDB: 1cd3_B
Probab=49.62 E-value=4 Score=23.24 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=4.9
Q ss_pred cHHhHHHHHHHh--cccccC
Q psy14949 2 SVENGKKIFTRA--CAQCHT 19 (102)
Q Consensus 2 d~~~G~~lf~~~--C~~CH~ 19 (102)
+++.|+.+|.++ |+.|--
T Consensus 66 ~iE~~k~~~~R~FG~A~~~d 85 (120)
T 1al0_B 66 EIEAGKSYCSRRFGGATCDD 85 (120)
T ss_dssp --------------CCCCST
T ss_pred HHHHHHHHHHHHcCCCCcch
Confidence 578899999874 999973
No 132
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=49.54 E-value=35 Score=20.25 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=18.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 79 KMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 79 ~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
.++|-.-||++||..=|.||.++
T Consensus 14 tfSyLP~lt~eqI~kQI~YlL~q 36 (140)
T 1gk8_I 14 TFSYLPPLTDEQIAAQVDYIVAN 36 (140)
T ss_dssp TTTTSSCCCHHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHC
Confidence 35666667999999999998764
No 133
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=49.44 E-value=13 Score=21.30 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
..||++|+.+|++.|..
T Consensus 39 r~Ltdeev~~Va~~L~~ 55 (112)
T 2lky_A 39 RRLTNDEIKAIAEDLEK 55 (112)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 45799999999998853
No 134
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=49.18 E-value=13 Score=20.97 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
..||++|+.+|++.|..
T Consensus 37 r~Ltdeev~~Va~~L~~ 53 (103)
T 2kvc_A 37 RRLSHDEVKAVANELMR 53 (103)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 45799999999998853
No 135
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=48.88 E-value=10 Score=21.33 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=14.3
Q ss_pred CCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 77 GTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 77 ~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
++.+++....+..-..+|-+||++|+
T Consensus 17 ~~~~~p~~~~~~~~~~dV~~WLksLr 42 (101)
T 2es6_A 17 RGSHMPKSLTDPKLLKNIPMWLKSLR 42 (101)
T ss_dssp ----CCTTTSCHHHHTCHHHHHHTTT
T ss_pred CCCCCccccCCcccccCHHHHHHHcc
Confidence 33333344446667778888887763
No 136
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=48.70 E-value=4.5 Score=24.21 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=9.8
Q ss_pred HHHHHhcccccCCC
Q psy14949 8 KIFTRACAQCHTAN 21 (102)
Q Consensus 8 ~lf~~~C~~CH~~~ 21 (102)
.+.+..|..||+..
T Consensus 110 ~~~~~~C~~CH~~~ 123 (159)
T 2j7a_C 110 EVVNANCKACHTMT 123 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCcccccccCccc
Confidence 44556799999753
No 137
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=47.47 E-value=28 Score=19.74 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=17.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 79 KMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 79 ~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
.++|-.-||++||..=|.||.++
T Consensus 13 tfSyLP~lt~eqI~kQI~Yll~q 35 (109)
T 1rbl_M 13 TFSYLPPLSDRQIAAQIEYMIEQ 35 (109)
T ss_dssp TTTTSSCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHC
Confidence 35666667999999999998753
No 138
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=46.88 E-value=4.8 Score=26.04 Aligned_cols=9 Identities=56% Similarity=1.221 Sum_probs=7.0
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
-|+.||-..
T Consensus 20 VCANCHLa~ 28 (249)
T 1ci3_M 20 VCANCHLAA 28 (249)
T ss_dssp GGGGTCCSB
T ss_pred Eeecccccc
Confidence 399999754
No 139
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=46.68 E-value=4.8 Score=26.06 Aligned_cols=9 Identities=56% Similarity=1.265 Sum_probs=7.0
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
-|+.||-..
T Consensus 20 VCANCHLA~ 28 (252)
T 1hcz_A 20 VCANCHLAS 28 (252)
T ss_dssp GGGGTCCSB
T ss_pred Eeecccccc
Confidence 399999754
No 140
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=46.63 E-value=4.8 Score=26.04 Aligned_cols=9 Identities=56% Similarity=1.257 Sum_probs=7.0
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
-|+.||-..
T Consensus 20 VCANCHLA~ 28 (251)
T 1e2w_A 20 VCANCHLAQ 28 (251)
T ss_dssp GGGGTCCSB
T ss_pred Eeecccccc
Confidence 399999754
No 141
>3cao_A Cytochrome C3; tetraheme, oxidised form, electron transport; HET: HEM; 1.60A {Desulfovibrio africanus} SCOP: a.138.1.1 PDB: 3car_A*
Probab=45.43 E-value=5.2 Score=22.16 Aligned_cols=14 Identities=21% Similarity=0.724 Sum_probs=9.9
Q ss_pred HHHHHhcccccCCC
Q psy14949 8 KIFTRACAQCHTAN 21 (102)
Q Consensus 8 ~lf~~~C~~CH~~~ 21 (102)
..|...|..||...
T Consensus 76 ~a~H~~C~~CH~~~ 89 (103)
T 3cao_A 76 DAYHQQCWGCHEKQ 89 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhccChHHHHhHHh
Confidence 34556799999744
No 142
>3bxu_A Cytochrome C3; multiheme cytochromes, electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} PDB: 1os6_A* 2ldo_A*
Probab=45.06 E-value=5.6 Score=20.52 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=10.2
Q ss_pred HHHHH-HhcccccCC
Q psy14949 7 KKIFT-RACAQCHTA 20 (102)
Q Consensus 7 ~~lf~-~~C~~CH~~ 20 (102)
+..|. ..|..||..
T Consensus 43 ~~~~~~~~C~~CH~~ 57 (71)
T 3bxu_A 43 KEMAHGKSCKGCHEE 57 (71)
T ss_dssp HHHHHTTTTHHHHHH
T ss_pred hhccccCHHHHHhcc
Confidence 45665 679999963
No 143
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=44.55 E-value=27 Score=19.83 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=18.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 79 KMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 79 ~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
.++|-.-||++||..=+.||.++
T Consensus 15 tfSyLP~lt~eqI~kQV~Yll~q 37 (110)
T 1svd_M 15 TFSYLPPMNAERIRAQIKYAIAQ 37 (110)
T ss_dssp TTTTSCCCCHHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHC
Confidence 35666667999999999998764
No 144
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=44.48 E-value=21 Score=20.61 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=16.4
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc
Q psy14949 80 MVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 80 m~~~~~ls~~e~~~l~~yl~sl 101 (102)
++|-.-||++||.+=|.||.++
T Consensus 13 fSyLP~Lt~eqI~kQV~yll~q 34 (118)
T 3zxw_B 13 FSYLPPLSDAQIARQIQYAIDQ 34 (118)
T ss_dssp -CCSCCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHhC
Confidence 4555567999999999998653
No 145
>2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins, electron transport, iron, metal-binding, periplasm, transport; HET: HEM; NMR {Shewanella frigidimarina}
Probab=43.83 E-value=7.5 Score=20.71 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=8.1
Q ss_pred HHhcccccCCC
Q psy14949 11 TRACAQCHTAN 21 (102)
Q Consensus 11 ~~~C~~CH~~~ 21 (102)
...|.+||+..
T Consensus 32 ~~~C~~CH~~~ 42 (86)
T 2k3v_A 32 FEQCQSCHGSL 42 (86)
T ss_dssp HHHTSSSSCCG
T ss_pred cchHhHhccCH
Confidence 35799999743
No 146
>3h33_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 2.25A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=43.80 E-value=3.3 Score=21.93 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=10.4
Q ss_pred HHHHHHh-cccccCCC
Q psy14949 7 KKIFTRA-CAQCHTAN 21 (102)
Q Consensus 7 ~~lf~~~-C~~CH~~~ 21 (102)
+..+... |..||...
T Consensus 43 ~~~~h~~~C~~CH~~~ 58 (75)
T 3h33_A 43 KVMAHGKGCKGCHEEM 58 (75)
T ss_dssp HHHHTTTTTHHHHHHH
T ss_pred HhHHhcChhHHHhhhh
Confidence 4556666 99999633
No 147
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=43.06 E-value=5.9 Score=26.12 Aligned_cols=9 Identities=56% Similarity=1.221 Sum_probs=6.8
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
-|+.||-..
T Consensus 21 VCANCHLa~ 29 (289)
T 1vf5_C 21 VCANCHLAA 29 (289)
T ss_dssp GGGGTCCCB
T ss_pred Eeecccccc
Confidence 399999654
No 148
>2je2_A Cytochrome P460; heme P460, cross-linked heme, metal binding protein; HET: HEC; 1.8A {Nitrosomonas europaea} PDB: 2je3_A*
Probab=42.86 E-value=4.1 Score=25.39 Aligned_cols=9 Identities=44% Similarity=1.136 Sum_probs=7.1
Q ss_pred HhcccccCC
Q psy14949 12 RACAQCHTA 20 (102)
Q Consensus 12 ~~C~~CH~~ 20 (102)
..|.+||..
T Consensus 135 ~~C~~CH~~ 143 (186)
T 2je2_A 135 AECAACHKE 143 (186)
T ss_dssp TTTHHHHHH
T ss_pred ccchhhCCc
Confidence 459999964
No 149
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=39.99 E-value=20 Score=20.80 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHhhcC
Q psy14949 86 RKEKDREDLIAYLSTLH 102 (102)
Q Consensus 86 ls~~e~~~l~~yl~sl~ 102 (102)
||++++..|..+|+.++
T Consensus 112 Ls~e~~~~l~~ii~~l~ 128 (135)
T 3r1f_A 112 LPSAAQQKVLDRIDELR 128 (135)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 58999999999998753
No 150
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=39.76 E-value=8.2 Score=22.48 Aligned_cols=6 Identities=67% Similarity=1.691 Sum_probs=3.2
Q ss_pred cccccC
Q psy14949 14 CAQCHT 19 (102)
Q Consensus 14 C~~CH~ 19 (102)
|..||-
T Consensus 97 CtqCHV 102 (123)
T 1jni_A 97 CLQCHV 102 (123)
T ss_dssp GGGTCC
T ss_pred cccccC
Confidence 555554
No 151
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=39.14 E-value=4.8 Score=26.00 Aligned_cols=8 Identities=63% Similarity=1.414 Sum_probs=6.7
Q ss_pred cccccCCC
Q psy14949 14 CAQCHTAN 21 (102)
Q Consensus 14 C~~CH~~~ 21 (102)
|+.||-..
T Consensus 21 CANCHLa~ 28 (249)
T 2jxm_B 21 CANCHLAK 28 (249)
T ss_dssp HHHHCCSB
T ss_pred eecccccc
Confidence 99999754
No 152
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=35.96 E-value=28 Score=19.71 Aligned_cols=17 Identities=6% Similarity=-0.124 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
..||++|+.+|+.-|..
T Consensus 42 R~Ltddev~~Va~~L~~ 58 (107)
T 3ol3_A 42 RSLTEDEVVRAAQAILR 58 (107)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 34799999999988754
No 153
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=35.47 E-value=30 Score=21.87 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHhh
Q psy14949 85 LRKEKDREDLIAYLST 100 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~s 100 (102)
+.+++|+..++.||.|
T Consensus 220 ~g~peevA~~v~fL~S 235 (256)
T 4fs3_A 220 NVDQVEVGKTAAYLLS 235 (256)
T ss_dssp CCCHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC
Confidence 4479999999999976
No 154
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=35.17 E-value=12 Score=17.81 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=6.6
Q ss_pred cccccCCC
Q psy14949 14 CAQCHTAN 21 (102)
Q Consensus 14 C~~CH~~~ 21 (102)
|.+||++.
T Consensus 23 C~sC~~is 30 (47)
T 1xv3_A 23 CDVCYGIP 30 (47)
T ss_dssp TTCTTTSC
T ss_pred CccccccC
Confidence 99999764
No 155
>1h21_A Split-soret cytochrome C; dimeric DI-heme cytochrome, stacked heme arrangement, novel fold, novel iron-sulfur centre; HET: HEC; 2.5A {Desulfovibrio desulfuricans} SCOP: a.138.1.3
Probab=34.66 E-value=12 Score=24.30 Aligned_cols=9 Identities=44% Similarity=1.265 Sum_probs=7.3
Q ss_pred Hhccccc-CC
Q psy14949 12 RACAQCH-TA 20 (102)
Q Consensus 12 ~~C~~CH-~~ 20 (102)
+.|.+|| +.
T Consensus 207 ~~c~~Ch~~~ 216 (247)
T 1h21_A 207 SSCGECHMTK 216 (247)
T ss_dssp HHHHHHHTST
T ss_pred hhhhhhcCCC
Confidence 5899999 53
No 156
>2hfg_R Tumor necrosis factor receptor superfamily member; FAB fragment, TNFRSF, antibody-receptor complex, CRD, immune; 2.61A {Homo sapiens}
Probab=34.49 E-value=6.4 Score=18.95 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=7.7
Q ss_pred HhcccccCCC
Q psy14949 12 RACAQCHTAN 21 (102)
Q Consensus 12 ~~C~~CH~~~ 21 (102)
++|.+||-+.
T Consensus 27 R~CVaC~Ll~ 36 (51)
T 2hfg_R 27 RHCVACGLLR 36 (51)
T ss_dssp TEEEECEECC
T ss_pred hcceeeEEEe
Confidence 5799999654
No 157
>1p0t_A Tumor necrosis factor receptor superfamily member 13C; BAFF, BLys, stall, BAFF-R, BR-3, protein binding; 3.30A {Homo sapiens} PDB: 1osx_A
Probab=33.81 E-value=7.8 Score=19.46 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=7.9
Q ss_pred HhcccccCCC
Q psy14949 12 RACAQCHTAN 21 (102)
Q Consensus 12 ~~C~~CH~~~ 21 (102)
++|.+||-..
T Consensus 30 R~CVaC~Ll~ 39 (63)
T 1p0t_A 30 RHCVACGLLR 39 (63)
T ss_dssp TEEECGGGSC
T ss_pred hcceeeEEee
Confidence 5799999654
No 158
>2bq4_A Cytochrome C3, basic cytochrome C3; electron transfer, sulfate reducing bacteria, SAD, heme, iron, electron transport; HET: HEC; 1.68A {Desulfovibrio africanus}
Probab=33.81 E-value=4.6 Score=23.14 Aligned_cols=8 Identities=38% Similarity=1.207 Sum_probs=5.6
Q ss_pred hcccccCC
Q psy14949 13 ACAQCHTA 20 (102)
Q Consensus 13 ~C~~CH~~ 20 (102)
.|.+||..
T Consensus 89 ~C~~CH~~ 96 (116)
T 2bq4_A 89 SCQGCHKE 96 (116)
T ss_dssp SHHHHHHH
T ss_pred chHHHHHH
Confidence 67788854
No 159
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.36 E-value=6.1 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=15.2
Q ss_pred CCCccCCCCCCCHHHHHHHHHHHhhcC
Q psy14949 76 PGTKMVFPGLRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 76 ~~~~m~~~~~ls~~e~~~l~~yl~sl~ 102 (102)
+++.|+.....+...+.+|.+||++|+
T Consensus 34 ~~s~~~p~~~~d~~~~~dV~~WL~sLr 60 (119)
T 2b6g_A 34 SNSSMNPKSLTDPKLLKNIPMWLKSLR 60 (119)
T ss_dssp -----CHHHHSCHHHHHCHHHHHHHHT
T ss_pred CCCCCCcccccCcccccCHHHHHHHCC
Confidence 345565444546677888888988763
No 160
>2ozy_A Cytochrome C-type protein NRFB; pentaheme C-type cytochrome, electron transport; HET: HEC; 1.74A {Escherichia coli} PDB: 2p0b_A*
Probab=33.26 E-value=16 Score=21.69 Aligned_cols=9 Identities=33% Similarity=1.021 Sum_probs=6.4
Q ss_pred HHhcccccC
Q psy14949 11 TRACAQCHT 19 (102)
Q Consensus 11 ~~~C~~CH~ 19 (102)
...|.+||+
T Consensus 85 ~~~C~~CH~ 93 (163)
T 2ozy_A 85 NSVCMSCHL 93 (163)
T ss_dssp HHHHTTTCC
T ss_pred cChhhhhCC
Confidence 346888886
No 161
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=33.24 E-value=35 Score=19.44 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
+.||++|+..|.++|..
T Consensus 45 ~~Lt~~ei~~l~~~i~~ 61 (114)
T 3r8n_M 45 SELSEGQIDTLRDEVAK 61 (114)
T ss_dssp TTCCHHHHHHHHHHHSS
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 45699999999999854
No 162
>3g27_A 82 prophage-derived uncharacterized protein YBCO; E.coli, prophage-associated, zinc-binding, structural genomi 2; 2.10A {Escherichia coli k-12}
Probab=32.48 E-value=7.4 Score=21.65 Aligned_cols=9 Identities=44% Similarity=1.091 Sum_probs=7.0
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
.|..||..=
T Consensus 53 ~Cs~CH~~i 61 (96)
T 3g27_A 53 ACSACHDEI 61 (96)
T ss_dssp ECHHHHHHH
T ss_pred hHHHHHHHH
Confidence 499999754
No 163
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.38 E-value=30 Score=20.69 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
+.||++|+..|.++|.+
T Consensus 52 g~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 52 GYLTDEQVKKIEEILAD 68 (148)
T ss_dssp TBCCHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHhc
Confidence 45699999999999864
No 164
>2cy3_A Cytochrome C3; electron transport (heme protein); HET: HEM; 1.70A {Desulfomicrobium norvegicum} SCOP: a.138.1.1 PDB: 1w7o_A*
Probab=31.74 E-value=4.2 Score=23.39 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=6.5
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
.|..||...
T Consensus 91 ~C~~CH~~~ 99 (118)
T 2cy3_A 91 QCIDCHKAL 99 (118)
T ss_dssp HHHHHHHHH
T ss_pred chHHHhhHH
Confidence 688888643
No 165
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=31.71 E-value=31 Score=19.12 Aligned_cols=14 Identities=14% Similarity=0.553 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHh
Q psy14949 86 RKEKDREDLIAYLS 99 (102)
Q Consensus 86 ls~~e~~~l~~yl~ 99 (102)
-||+|++++++|.-
T Consensus 71 RSDeE~kAMlsyy~ 84 (106)
T 2npt_A 71 RSDEEMKAMLSYYY 84 (106)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 37999999999964
No 166
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=31.40 E-value=7.6 Score=25.65 Aligned_cols=8 Identities=63% Similarity=1.410 Sum_probs=6.6
Q ss_pred cccccCCC
Q psy14949 14 CAQCHTAN 21 (102)
Q Consensus 14 C~~CH~~~ 21 (102)
|+.||-..
T Consensus 21 CANCHLA~ 28 (292)
T 1q90_A 21 CANCHLAQ 28 (292)
T ss_dssp HHHHCCCB
T ss_pred eecccccc
Confidence 99999654
No 167
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=31.01 E-value=35 Score=22.26 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHhh
Q psy14949 85 LRKEKDREDLIAYLST 100 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~s 100 (102)
+-+++|+..++.||.|
T Consensus 238 ~g~peeiA~~v~FLaS 253 (273)
T 4fgs_A 238 VGRAEEVAAAALFLAS 253 (273)
T ss_dssp CBCHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC
Confidence 3479999999999976
No 168
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=30.66 E-value=70 Score=18.22 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHhh
Q psy14949 86 RKEKDREDLIAYLST 100 (102)
Q Consensus 86 ls~~e~~~l~~yl~s 100 (102)
-+++||..|.+-|.+
T Consensus 83 P~peDI~RV~arLaA 97 (112)
T 2m0n_A 83 PTAQDISRVASRLAA 97 (112)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh
Confidence 379999999998865
No 169
>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized tetraheme cytochrome C, electron transport; HET: HEM; 0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB: 1m1p_A* 1m1r_A*
Probab=30.64 E-value=12 Score=19.95 Aligned_cols=9 Identities=33% Similarity=1.106 Sum_probs=7.1
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
.|..||+..
T Consensus 14 ~C~~CH~~~ 22 (91)
T 1m1q_A 14 GCESCHKDG 22 (91)
T ss_dssp CGGGTSGGG
T ss_pred chhHhCCCC
Confidence 699999743
No 170
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=30.22 E-value=33 Score=18.30 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHhhc
Q psy14949 85 LRKEKDREDLIAYLSTL 101 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~sl 101 (102)
.|+++++..|..|+..+
T Consensus 89 ~l~~e~~~~i~~~i~~l 105 (111)
T 1b0n_A 89 GVSKKQFREFLDYQKWR 105 (111)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 45899998888888654
No 171
>3ubr_A Cytochrome C-552; DECA-heme, electron transfer, redox, CYMA, oxidoreductase; HET: HEC; 2.59A {Shewanella oneidensis}
Probab=29.89 E-value=13 Score=26.42 Aligned_cols=8 Identities=63% Similarity=1.423 Sum_probs=6.6
Q ss_pred hcccccCC
Q psy14949 13 ACAQCHTA 20 (102)
Q Consensus 13 ~C~~CH~~ 20 (102)
.|+.||..
T Consensus 167 VCaQCHve 174 (439)
T 3ubr_A 167 VCAQCHVE 174 (439)
T ss_dssp TTTTTSSC
T ss_pred HHHhccce
Confidence 59999964
No 172
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=29.53 E-value=38 Score=21.72 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHhh
Q psy14949 85 LRKEKDREDLIAYLST 100 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~s 100 (102)
+-+++|+..++.||.|
T Consensus 207 ~g~peeiA~~v~fLaS 222 (242)
T 4b79_A 207 WGEAPEVASAAAFLCG 222 (242)
T ss_dssp CBCHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHhC
Confidence 4479999999999975
No 173
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=29.26 E-value=51 Score=21.75 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=22.9
Q ss_pred cHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHH
Q psy14949 60 SASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLI 95 (102)
Q Consensus 60 ~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~ 95 (102)
..+.+.++|+. .+..|||....++++|++..
T Consensus 225 ~a~~il~~L~~-----~~G~l~~~DkS~pe~I~~~f 255 (285)
T 3go5_A 225 DAQMILTYLES-----NGGFMTLNDKSSPDDIKATF 255 (285)
T ss_dssp HHHHHHHHHHH-----TTTEESCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHh-----cCCeeccCCCCCHHHHHHHh
Confidence 34567777764 24588999988999998764
No 174
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=29.20 E-value=39 Score=21.70 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHhh
Q psy14949 83 PGLRKEKDREDLIAYLST 100 (102)
Q Consensus 83 ~~~ls~~e~~~l~~yl~s 100 (102)
..+-+++|+..++.||.|
T Consensus 223 gR~g~peevA~~v~fLaS 240 (261)
T 4h15_A 223 GRPAKPEEVANLIAFLAS 240 (261)
T ss_dssp SSCBCHHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHhC
Confidence 344479999999999976
No 175
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=29.12 E-value=42 Score=25.70 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHHHhhc
Q psy14949 82 FPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~sl 101 (102)
|.++ |.+|+.+|.+||.+.
T Consensus 68 fadL-s~~E~~aV~~~L~~~ 86 (797)
T 3pgb_A 68 WYGL-TDDETADVAKWLFGR 86 (797)
T ss_dssp SSCC-CHHHHHHHHHHHHTC
T ss_pred cccc-CHHHHHHHHHHHhcC
Confidence 4554 899999999999874
No 176
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=28.46 E-value=43 Score=20.11 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
+.||++|+..|.++|.+
T Consensus 57 g~Lt~~ei~~l~~~i~~ 73 (152)
T 3iz6_M 57 GELSAEEMDRLMAVVHN 73 (152)
T ss_dssp TTSCHHHHHHHHHHHHS
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 45699999999999864
No 177
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=28.04 E-value=44 Score=20.13 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
+.||++|+..|.++|..
T Consensus 59 ~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 59 GLLTEDQCNKITDLIAD 75 (155)
T ss_dssp SCSCHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHhC
Confidence 45699999999999875
No 178
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=27.93 E-value=16 Score=26.22 Aligned_cols=9 Identities=33% Similarity=1.209 Sum_probs=7.0
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
.|..||+..
T Consensus 15 ~C~~CH~~~ 23 (572)
T 1d4d_A 15 GCDSCHVSD 23 (572)
T ss_dssp CSTTTSSSS
T ss_pred ChhhhCCCC
Confidence 599999764
No 179
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite ammonification; HET: HEM; 2.3A {Desulfovibrio desulfuricans} SCOP: a.138.1.3
Probab=27.87 E-value=18 Score=26.10 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=7.3
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
.|..||+..
T Consensus 187 gC~dCHgp~ 195 (519)
T 1oah_A 187 GCANCHDPA 195 (519)
T ss_dssp CGGGTBCTT
T ss_pred ChhhcCCcc
Confidence 399999765
No 180
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=27.50 E-value=43 Score=19.97 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
+.||++|+..|.++|.+
T Consensus 59 g~Lt~~ei~~l~~~i~~ 75 (146)
T 3u5c_S 59 GELTQEELERIVQIMQN 75 (146)
T ss_dssp SSCCHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 35699999999999864
No 181
>1ft5_A Cytochrome C554; heme-stacking, electron transport; HET: HEM; 1.60A {Nitrosomonas europaea} SCOP: a.138.1.3 PDB: 1bvb_A* 1ft6_A*
Probab=27.26 E-value=18 Score=22.76 Aligned_cols=10 Identities=30% Similarity=1.019 Sum_probs=7.8
Q ss_pred HhcccccCCC
Q psy14949 12 RACAQCHTAN 21 (102)
Q Consensus 12 ~~C~~CH~~~ 21 (102)
..|..||...
T Consensus 58 ~~C~~CH~~~ 67 (211)
T 1ft5_A 58 KDCVGCHVDG 67 (211)
T ss_dssp TTTGGGSBSS
T ss_pred ccccccCCCc
Confidence 3599999764
No 182
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=27.01 E-value=42 Score=18.38 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHhhc
Q psy14949 86 RKEKDREDLIAYLSTL 101 (102)
Q Consensus 86 ls~~e~~~l~~yl~sl 101 (102)
+|++|+..|..+|..+
T Consensus 108 ls~ee~~~l~~~L~~~ 123 (126)
T 1sd4_A 108 LNNKEIEELRDILNDI 123 (126)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5899999999998764
No 183
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=26.73 E-value=53 Score=21.00 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
.+.+++|+..++.||.+
T Consensus 198 R~g~pediA~~v~fL~s 214 (247)
T 3ged_A 198 KVGTPKDISNMVLFLCQ 214 (247)
T ss_dssp SCBCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 34579999999999976
No 184
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=26.56 E-value=47 Score=18.12 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHhhcC
Q psy14949 85 LRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~sl~ 102 (102)
.+++++..+|..|..+++
T Consensus 69 ~l~~~~K~~L~~~~~~lk 86 (93)
T 3mab_A 69 GLDEAKKIELKKFHQSLE 86 (93)
T ss_dssp GSCHHHHHHHHHHHHHHC
T ss_pred HCCHHHHHHHHHHHHHhh
Confidence 458999999999998874
No 185
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=26.44 E-value=22 Score=21.11 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=22.2
Q ss_pred cHHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHH
Q psy14949 60 SASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIA 96 (102)
Q Consensus 60 ~~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~ 96 (102)
..+...+|+.+|.++.. . .+ ||++|+.+|.+
T Consensus 46 ~~~~RerF~aDpeA~l~----~-~g-LTeEEr~AV~~ 76 (139)
T 1b4u_A 46 KAENRERFKADESAYLD----E-WN-LTPAAKAAVLA 76 (139)
T ss_dssp SHHHHHHHHHCHHHHHH----T-TT-CCHHHHHHHHH
T ss_pred CHHHHHHHHhCHHHHHH----H-cC-CCHHHHHHHHc
Confidence 57778888888776543 1 23 48999999875
No 186
>2rdz_A Cytochrome C-552; decaheme, reductase, calcium, electron transport, iron, metal-binding, oxidoreductase, periplasm, transport; HET: HEC; 1.74A {Escherichia coli} SCOP: a.138.1.3 PDB: 1gu6_A* 3l1t_A* 3tor_A* 2rf7_A*
Probab=26.38 E-value=14 Score=26.12 Aligned_cols=9 Identities=44% Similarity=1.143 Sum_probs=7.3
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
.|++||...
T Consensus 182 vCaqCH~~y 190 (452)
T 2rdz_A 182 VCGQCHVEY 190 (452)
T ss_dssp HHTTTSSCC
T ss_pred hhhhccccc
Confidence 599999753
No 187
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=26.22 E-value=17 Score=19.03 Aligned_cols=7 Identities=43% Similarity=1.512 Sum_probs=5.9
Q ss_pred hcccccC
Q psy14949 13 ACAQCHT 19 (102)
Q Consensus 13 ~C~~CH~ 19 (102)
.|+.||-
T Consensus 35 i~S~~HP 41 (71)
T 3v2d_4 35 VCSKCHP 41 (71)
T ss_dssp CCTTTSS
T ss_pred ecCCCCC
Confidence 5999994
No 188
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=26.16 E-value=18 Score=25.84 Aligned_cols=8 Identities=38% Similarity=1.261 Sum_probs=5.9
Q ss_pred hcccccCC
Q psy14949 13 ACAQCHTA 20 (102)
Q Consensus 13 ~C~~CH~~ 20 (102)
.|.+||+.
T Consensus 14 ~C~~CH~~ 21 (566)
T 1qo8_A 14 SCQSCHAK 21 (566)
T ss_dssp CGGGTSCS
T ss_pred ChhhhCCC
Confidence 58888864
No 189
>1gyo_A Cytochrome C3, A dimeric class III C-type cytochrome; electron transport, DI-tetraheme, AB initio, electron transfer; HET: HEC; 1.2A {Desulfovibrio gigas} SCOP: a.138.1.1
Probab=25.75 E-value=18 Score=20.22 Aligned_cols=9 Identities=44% Similarity=1.158 Sum_probs=7.1
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
.|..||+..
T Consensus 51 ~C~~CH~~~ 59 (109)
T 1gyo_A 51 KCADCHIDR 59 (109)
T ss_dssp CGGGTCCCC
T ss_pred chhhhcCCc
Confidence 599999744
No 190
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=25.07 E-value=52 Score=19.11 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy14949 84 GLRKEKDREDLIAYLST 100 (102)
Q Consensus 84 ~~ls~~e~~~l~~yl~s 100 (102)
+.||++|+..|.++|..
T Consensus 46 ~~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 46 KDLTEAEVVRLREYVEN 62 (126)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 34699999999999874
No 191
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=25.06 E-value=18 Score=18.82 Aligned_cols=8 Identities=38% Similarity=1.310 Sum_probs=6.3
Q ss_pred HhcccccC
Q psy14949 12 RACAQCHT 19 (102)
Q Consensus 12 ~~C~~CH~ 19 (102)
..|+.||-
T Consensus 35 di~s~~HP 42 (70)
T 1vs6_Z 35 DVCSKCHP 42 (70)
T ss_dssp BCCSSSCC
T ss_pred eecCCCCc
Confidence 45999994
No 192
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=24.86 E-value=54 Score=24.92 Aligned_cols=19 Identities=11% Similarity=0.490 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy14949 81 VFPGLRKEKDREDLIAYLST 100 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~s 100 (102)
+|..+ |.+|+.+|.+||.+
T Consensus 20 p~~~L-s~~E~~aV~~~L~~ 38 (747)
T 1w7c_A 20 IWTSL-AKEEVQEVLDLLHS 38 (747)
T ss_dssp TTCCC-CHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHh
Confidence 55555 89999999999965
No 193
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=24.78 E-value=39 Score=21.73 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHHhh
Q psy14949 85 LRKEKDREDLIAYLST 100 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~s 100 (102)
+-+++|+..++.||.|
T Consensus 212 ~g~peeiA~~v~fLaS 227 (247)
T 4hp8_A 212 WGHSEDIAGAAVFLSS 227 (247)
T ss_dssp CBCTHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHhC
Confidence 3478999999999976
No 194
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=24.35 E-value=20 Score=25.58 Aligned_cols=9 Identities=44% Similarity=1.254 Sum_probs=6.4
Q ss_pred hcccccCCC
Q psy14949 13 ACAQCHTAN 21 (102)
Q Consensus 13 ~C~~CH~~~ 21 (102)
.|..||+..
T Consensus 13 ~C~~CH~~~ 21 (571)
T 1y0p_A 13 ECDSCHTPD 21 (571)
T ss_dssp CGGGTSCTT
T ss_pred ChhhcCCCc
Confidence 588888654
No 195
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=23.84 E-value=19 Score=18.86 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=6.2
Q ss_pred HhcccccC
Q psy14949 12 RACAQCHT 19 (102)
Q Consensus 12 ~~C~~CH~ 19 (102)
..|+.||-
T Consensus 34 di~s~~HP 41 (73)
T 1nkw_Y 34 DVWSGVHP 41 (73)
T ss_pred EECCCCCc
Confidence 35999994
No 196
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=23.36 E-value=55 Score=13.83 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhh
Q psy14949 88 EKDREDLIAYLST 100 (102)
Q Consensus 88 ~~e~~~l~~yl~s 100 (102)
..++.+|++||..
T Consensus 15 aa~vaalaawll~ 27 (32)
T 2l5b_A 15 AAQVAALAAWLLG 27 (32)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 5788899999864
No 197
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=22.34 E-value=36 Score=15.56 Aligned_cols=9 Identities=0% Similarity=0.280 Sum_probs=7.2
Q ss_pred CCHHHHHHH
Q psy14949 86 RKEKDREDL 94 (102)
Q Consensus 86 ls~~e~~~l 94 (102)
+||+|+.+|
T Consensus 23 ltDEeLD~m 31 (39)
T 3lqv_P 23 LSDEELDAM 31 (39)
T ss_dssp CCHHHHHHT
T ss_pred CCHHHHHHh
Confidence 589998876
No 198
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=22.24 E-value=55 Score=17.87 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 61 ASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 61 ~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
.+.|..|+.... .| .++|+..|..||..+
T Consensus 15 r~~l~~Wv~~~~--~P----------~~~DV~~l~~yL~~l 43 (97)
T 4fjo_A 15 KTLLKEWITTIS--DP----------MEEDILQVVRYCTDL 43 (97)
T ss_dssp HHHHHHHHHHCS--SC----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CC----------CHHHHHHHHHHHHHH
Confidence 445777776421 23 689999999999764
No 199
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=21.60 E-value=70 Score=20.52 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHHhh
Q psy14949 85 LRKEKDREDLIAYLST 100 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~s 100 (102)
+-+++|+..++.||.|
T Consensus 219 ~g~pediA~~v~fLaS 234 (254)
T 4fn4_A 219 LAEPEDIANVIVFLAS 234 (254)
T ss_dssp CBCHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC
Confidence 3479999999999976
No 200
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=21.32 E-value=57 Score=18.83 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCCCCCCCccCCCCCCCHHHHHHHHHHHhhc
Q psy14949 61 ASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101 (102)
Q Consensus 61 ~~~l~~~~~~~~~~~~~~~m~~~~~ls~~e~~~l~~yl~sl 101 (102)
...|..|+.... .| .++|+..|+.||..+
T Consensus 42 K~lL~~Wv~s~~--~P----------~~~DV~~l~~yL~~l 70 (124)
T 3vu7_H 42 KTLLREWITTIS--DP----------MEEDILQVVKYCTDL 70 (124)
T ss_dssp HHHHHHHHHHHC--SC----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CC----------CHHHHHHHHHHHHHH
Confidence 445667776321 23 589999999999764
No 201
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=21.20 E-value=63 Score=18.67 Aligned_cols=18 Identities=33% Similarity=0.456 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHhhcC
Q psy14949 85 LRKEKDREDLIAYLSTLH 102 (102)
Q Consensus 85 ~ls~~e~~~l~~yl~sl~ 102 (102)
..+-+++.+|+.||.+++
T Consensus 167 ~~s~e~~~~~i~~Ll~kk 184 (184)
T 4dvc_A 167 AKSLDEYFDLVNYLLTLK 184 (184)
T ss_dssp CSSHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHhCc
Confidence 346799999999998864
No 202
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=20.92 E-value=71 Score=24.28 Aligned_cols=19 Identities=16% Similarity=0.550 Sum_probs=15.7
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy14949 81 VFPGLRKEKDREDLIAYLST 100 (102)
Q Consensus 81 ~~~~~ls~~e~~~l~~yl~s 100 (102)
+|..+ |.+|+.+|.+||.+
T Consensus 42 ~~~~L-s~~E~~~V~~~L~~ 60 (746)
T 1tu5_A 42 LFADL-SREELTTVMSFLTQ 60 (746)
T ss_dssp CSSCC-CHHHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHHHHHHHhc
Confidence 45555 89999999999975
No 203
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=20.85 E-value=25 Score=20.11 Aligned_cols=7 Identities=57% Similarity=1.483 Sum_probs=5.7
Q ss_pred hcccccC
Q psy14949 13 ACAQCHT 19 (102)
Q Consensus 13 ~C~~CH~ 19 (102)
.|+.||-
T Consensus 50 ~CgtC~v 56 (123)
T 3n9z_C 50 ACSTCHL 56 (123)
T ss_dssp SCSTTBC
T ss_pred EeCCCee
Confidence 4889996
No 204
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=20.79 E-value=79 Score=14.67 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q psy14949 82 FPGLRKEKDREDLIAYLST 100 (102)
Q Consensus 82 ~~~~ls~~e~~~l~~yl~s 100 (102)
+...|.....++-+.||.+
T Consensus 10 ySk~Ld~~~akdFv~WL~~ 28 (42)
T 2b4n_A 10 YSIAMDKIHQQDFVNWLLA 28 (42)
T ss_dssp CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555666677777777764
No 205
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=20.53 E-value=36 Score=17.33 Aligned_cols=17 Identities=6% Similarity=0.524 Sum_probs=13.5
Q ss_pred CCCCCHHHHHHHHHHHhh
Q psy14949 83 PGLRKEKDREDLIAYLST 100 (102)
Q Consensus 83 ~~~ls~~e~~~l~~yl~s 100 (102)
.++ |++....|+.|+-+
T Consensus 64 tgi-sqetaqkiadfits 80 (82)
T 3fbl_A 64 TGI-SQETAQKIADFITS 80 (82)
T ss_dssp TTC-CHHHHHHHHHHHHH
T ss_pred ccc-cHHHHHHHHHHHhc
Confidence 455 78999999999865
No 206
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=20.40 E-value=30 Score=25.89 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=8.1
Q ss_pred HhcccccCCC
Q psy14949 12 RACAQCHTAN 21 (102)
Q Consensus 12 ~~C~~CH~~~ 21 (102)
.+|..||..+
T Consensus 493 ~~C~~CHn~~ 502 (669)
T 3pmq_A 493 GQCQLCHNPN 502 (669)
T ss_dssp TTGGGTSSTT
T ss_pred CcccCcCCCC
Confidence 4699999865
No 207
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=20.23 E-value=88 Score=15.30 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHhh
Q psy14949 86 RKEKDREDLIAYLST 100 (102)
Q Consensus 86 ls~~e~~~l~~yl~s 100 (102)
.|++|=..|+.||+.
T Consensus 5 FT~edD~~L~~~v~~ 19 (59)
T 1fex_A 5 FTDADDVAILTYVKE 19 (59)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 478888899999865
No 208
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=20.16 E-value=24 Score=19.31 Aligned_cols=7 Identities=57% Similarity=1.483 Sum_probs=5.7
Q ss_pred hcccccC
Q psy14949 13 ACAQCHT 19 (102)
Q Consensus 13 ~C~~CH~ 19 (102)
.|+.||-
T Consensus 51 ~CgtC~v 57 (108)
T 2bt6_A 51 ACSTCHL 57 (108)
T ss_dssp SBSTTEE
T ss_pred CcCCCEE
Confidence 4889995
No 209
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=20.00 E-value=64 Score=18.24 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHhhc
Q psy14949 86 RKEKDREDLIAYLSTL 101 (102)
Q Consensus 86 ls~~e~~~l~~yl~sl 101 (102)
+|++|+..|..+|..+
T Consensus 107 ls~eE~~~L~~lL~~~ 122 (138)
T 2g9w_A 107 VGADEADALRRALAEL 122 (138)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5899999999888753
Done!