RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14949
(102 letters)
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET:
HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB:
1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A*
2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A*
1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Length = 103
Score = 182 bits (464), Expect = 7e-62
Identities = 61/99 (61%), Positives = 78/99 (78%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
V GKK F + CAQCHT GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+
Sbjct: 2 DVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNN 61
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
TL YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL +
Sbjct: 62 DTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKS 100
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM;
2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Length = 106
Score = 181 bits (463), Expect = 1e-61
Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
GK +F C CHT GANKVGP+L+GVVGR +G PG++Y++AN GI W+
Sbjct: 7 DPVEGKHLFHTICITCHTD-IKGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTP 65
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
L Y+++P+K +PGTKM +PG + R D+IAYL TL
Sbjct: 66 DVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLETL 105
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane
space, metal-binding, thioether bond, respiratory chain,
trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata}
PDB: 2yk3_A* 4dy9_A*
Length = 114
Score = 180 bits (460), Expect = 4e-61
Identities = 53/100 (53%), Positives = 72/100 (72%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
G+K+F AQCHTAN+GGAN VGPNL+G+VGR +G G+ Y+ AN G+ W+
Sbjct: 13 DAARGEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTP 72
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
LD+YL+NP K++PGTKM F G++K ++R D+IAYL TL
Sbjct: 73 DVLDVYLENPXKFMPGTKMSFAGMKKPQERADVIAYLETL 112
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET:
HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB:
1cry_A* 1io3_A*
Length = 107
Score = 180 bits (458), Expect = 7e-61
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+G+++F + C CH+ G NKVGP L G+ GR +G GF Y+DANKN GITW+
Sbjct: 3 AASGEQVFKQ-CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEE 61
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
Y+++PK IPGTKM+F G++ E+ DLIAY+
Sbjct: 62 VFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQF 100
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A
{Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W*
3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B*
2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A*
2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Length = 108
Score = 177 bits (451), Expect = 8e-60
Identities = 55/100 (55%), Positives = 66/100 (66%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ + YL NP KYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A
{Oryza sativa} SCOP: a.3.1.1
Length = 112
Score = 176 bits (448), Expect = 2e-59
Identities = 54/97 (55%), Positives = 70/97 (72%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
+ + G+KIF CAQCHT ++G +K GPNL G+ GRQ+G PG+ Y+ A+KN + W
Sbjct: 11 NPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEE 70
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+TL YL NP KYIPGTKMVFPGL K ++R DLI+YL
Sbjct: 71 NTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLISYL 107
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain
(cytochrome), electron transfer, P. denitrificans,
electron donor; HET: HEC; 1.33A {Paracoccus
denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A*
1ql4_A*
Length = 140
Score = 174 bits (443), Expect = 3e-58
Identities = 43/100 (43%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
G+K+F + C CH G + VGP+L GVVGR GF+Y+D K G W+
Sbjct: 43 DPAAGEKVFGK-CKACHKL--DGNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTP 99
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
L +L NPK + GTKM F GL K +DR +LIAYL
Sbjct: 100 EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQ 139
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A
{Methylobacterium extorquens} SCOP: a.3.1.1
Length = 100
Score = 162 bits (413), Expect = 5e-54
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQ-APGFDYTDANKNKGITWS 60
G+K F C CH + G VGP L GVVG + G+ A G+ ++DA K G+TW
Sbjct: 3 DAAAGEKAF-APCKACHNFEKNG---VGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWD 58
Query: 61 ASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ L +L +PKK +PGTKMVFPG+ K +D+IAYL T
Sbjct: 59 QADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLKTK 99
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM;
1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Length = 112
Score = 159 bits (403), Expect = 2e-52
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 13/111 (11%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDAN---KNKGIT 58
G+K+ + C CHT ++GGANKVGPNLFGV + Y+++ K KG+T
Sbjct: 3 DAAAGEKVSKK-CLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLT 61
Query: 59 WSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
W+ + L Y++NPK ++ +KM F L K+ + E++IAYL TL
Sbjct: 62 WTEANLAAYVKNPKAFVLEKSGDPKAKSKMTF-KLTKDDEIENVIAYLKTL 111
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET:
HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Length = 121
Score = 156 bits (395), Expect = 4e-51
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGIT 58
G+ +F + C CH N VGP L GV+ RQ G APGF+Y+ N G+
Sbjct: 4 DPAKGEAVFKK-CMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLH 62
Query: 59 WSASTLDIYLQNPKKYIP--------------GTKMVFPGLRKEKDREDLIAYLSTL 101
W+ + YL +P ++ TKMVF L E++R+D++AYL
Sbjct: 63 WTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQF 118
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus
denitrificans} SCOP: a.3.1.1
Length = 135
Score = 149 bits (379), Expect = 2e-48
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 2 SVENGKKIFTRACAQCHTANEGGA-----NKVGPNLFGVVGRQTGQAPGFDYTDA----- 51
G+K F + C CH K GPNL+GVVGR+ GF Y +
Sbjct: 5 DAAKGEKEFNK-CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVA 63
Query: 52 NKNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
KN +TW+ + L Y+ +PK + TKM F + K++ D++A+L+
Sbjct: 64 EKNPDLTWTEANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQD 118
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET:
HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1
PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Length = 114
Score = 148 bits (376), Expect = 2e-48
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 22/116 (18%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK---GITW 59
+ G+ +F + C CH N VGP L GVVGR+ G A GF Y+ N N G+ W
Sbjct: 3 AKAGEAVFKQ-CMTCHR---ADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVW 58
Query: 60 SASTLDIYLQNPKKYIPG--------------TKMVFPGLRKEKDREDLIAYLSTL 101
+A + YL +P ++ TKM F L E+ R+D++AYL+TL
Sbjct: 59 TADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLATL 113
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial
ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A
{Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Length = 134
Score = 147 bits (372), Expect = 2e-47
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 2 SVENGKKIFTRACAQCHTANEGGA------NKVGPNLFGVVGRQTGQAPGFDYTDA---- 51
G+K F + C CH K GPNL+GVVGR+ GF Y D
Sbjct: 4 DAAKGEKEFNK-CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEV 62
Query: 52 -NKNKGITWSASTLDIYLQNPKKYIP-GTKMVFPGLRKE----KDREDLIAYLSTL 101
KN + WS + L Y+ +PK ++ T +K K++ D++A+L+
Sbjct: 63 AEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKKTFKLGKNQADVVAFLAQH 118
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A
{Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Length = 116
Score = 145 bits (368), Expect = 4e-47
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 2 SVENGKKIFTRACAQCHT------ANEGGANKVGPNLFGVVGRQTGQAPGFDYTD---AN 52
G+K F + C CH+ K GPNL+GVVGR G P F Y D A
Sbjct: 2 DAAKGEKEFNK-CKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVAL 60
Query: 53 KNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
G W+ + Y+++P ++ T+M F + +D +A +
Sbjct: 61 GASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGEDVAAYLASVV 115
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter
capsulatus} SCOP: a.3.1.1
Length = 137
Score = 144 bits (365), Expect = 2e-46
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 18/115 (15%)
Query: 2 SVENGKKIFTRACAQCHT------ANEGGANKVGPNLFGVVGRQTGQAPGFDYTD---AN 52
G+K F + C CH+ K GPNL+GVVGR G P F Y D A
Sbjct: 23 DAAKGEKEFNK-CKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVAL 81
Query: 53 KNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLS 99
G W+ + Y+++P ++ T M F + +D +A +
Sbjct: 82 GASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLASVV 136
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A
{Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A*
1l9b_C* 1l9j_C* 2cxb_A*
Length = 124
Score = 141 bits (358), Expect = 2e-45
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 2 SVENGKKIFTRACAQCHTANE-------GGANKVGPNLFGVVGRQTGQAPGFD-YTDANK 53
E G K F + C CH + G K GPNL+GVVGR G F Y + K
Sbjct: 4 DPEAGAKAFNQ-CQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMK 62
Query: 54 N---KGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
KG+ W Y+Q+P K++ KM F L+KE D ++ AYL +
Sbjct: 63 EAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQV 120
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase;
HET: HEM; 1.3A {Rhodothermus marinus}
Length = 99
Score = 80.3 bits (198), Expect = 2e-21
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 3 VENGKKIF-TRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
E G +++ +AC CH+ + G+ VGP+ G+ G G
Sbjct: 6 AELGARLYREKACFSCHSID--GSRLVGPSFKGLYGSTRTFEDGTTAV---------ADE 54
Query: 62 STLDIYLQNPKKYI----PGTKMVFPGLRKEKDREDLIAYLSTLH 102
+ L + P + P E++ LI ++
Sbjct: 55 NYLRESILQPGAKVVQGYPNVMPASYASLSEREVAALIEFIKQQQ 99
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer,
electron transport; HET: HEC; NMR {Pseudomonas putida}
Length = 110
Score = 63.5 bits (154), Expect = 7e-15
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANK--VGPNLFGVVGRQTGQAPGFDYTDANKNKGITW 59
S +G++IF C+ CHT + +GP+L GV + +
Sbjct: 2 SFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGV---------TRQRDANWLVRWLKV 52
Query: 60 SASTL---DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
L D + M L + + LI+YL
Sbjct: 53 PDQMLAEKDPLAMLLFEQYNRLAMPNMRL-GDAEVSALISYL 93
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL
HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Length = 337
Score = 62.1 bits (151), Expect = 5e-13
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 4 ENGKKIFTRACAQCHTAN-EGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
E G+++F + CA CH +GP L R + A + T N
Sbjct: 237 ERGQQVFQQNCAACHGVARSMPPAVIGPELGLWGNRTSLGAGIVENTPEN---------- 286
Query: 63 TLDIYLQNPKKYIPGTKM-VFPGLRKEKDREDLIAYLSTL 101
L ++++P PG KM FP L E+D + L+ YL L
Sbjct: 287 -LKAWIRDPAGMKPGVKMPGFPQL-SEEDLDALVRYLEGL 324
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET:
HEC; 1.24A {Rhodothermus marinus}
Length = 124
Score = 59.3 bits (143), Expect = 6e-13
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+ G+++F C CH +E +GP L V R +
Sbjct: 34 AQQGEQLFNTYCTACHRLDERF---IGPALRDVTKR---------RGPVYIMNVMLNPNG 81
Query: 63 TLD---IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ + Q ++Y GT M L E+ ++ YL +
Sbjct: 82 MIQRHPVMKQLVQEY--GTMMTDMAL-SEEQARAILEYLRQV 120
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome,
low potential, BIS_histidinyl, PSII modulator; HET: HEC;
1.21A {Synechocystis SP} SCOP: a.3.1.1
Length = 135
Score = 54.7 bits (131), Expect = 4e-11
Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 28/109 (25%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
NG+KIF C QCH G K N+ D + +
Sbjct: 26 FTNGQKIFVDTCTQCHL---QGKTKTNNNV------------SLGLADLAGAEPRRDNVL 70
Query: 63 TLDIYLQNPKKY-----------IPGTKMVFPGLRK--EKDREDLIAYL 98
L +L+NPK Y ++P +R E D D+ Y
Sbjct: 71 ALVEFLKNPKSYDGEDDYSELHPNISRPDIYPEMRNYTEDDIFDVAGYT 119
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron
transport, heme, iron, membrane, CY membrane; HET: HEM
HEC; 2.70A {Pseudomonas aeruginosa}
Length = 146
Score = 54.3 bits (130), Expect = 7e-11
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 2 SVENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWS 60
+V GK ++ + C CHT GA P L VVGR+ G+
Sbjct: 48 AVVRGKLVWEQNNCVGCHTLLGEGA-YFAPELGNVVGRRGGEE---------------GF 91
Query: 61 ASTLDIYLQNPKKYIPG-TKMVFPGLRKEKDREDLIAYL 98
+ L +++ +PG M L E +DL +L
Sbjct: 92 NTFLQAWMKIQPLNVPGRRAMPQFHL-SEGQVDDLAEFL 129
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport;
HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP:
a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V*
3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Length = 137
Score = 53.6 bits (128), Expect = 1e-10
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 17/99 (17%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
GK++F ACA CH GG K P+L +
Sbjct: 26 YLEGKRLFQYACASCHV---GGITKTNPSL------------DLRTETLALATPPRDNIE 70
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
L Y++NP Y G + + + D+ + L
Sbjct: 71 GLVDYMKNPTTY-DGEQEIA-EVHPSLRSADIFPKMRNL 107
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem,
membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A
{Thermosynechococcus elongatus} SCOP: i.5.1.1
Length = 163
Score = 52.9 bits (126), Expect = 3e-10
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 28/109 (25%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
GK++F ACA CH GG K P+L +
Sbjct: 52 YLEGKRLFQYACASCHV---GGITKTNPSL------------DLRTETLALATPPRDNIE 96
Query: 63 TLDIYLQNPKKY-----------IPGTKMVFPGLRK--EKDREDLIAYL 98
L Y++NP Y + +FP +R EKD + ++
Sbjct: 97 GLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHI 145
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM;
2.30A {Arthrospira maxima} SCOP: a.3.1.1
Length = 129
Score = 49.8 bits (118), Expect = 3e-09
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 28/109 (25%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
++ G+++F ACAQCH G + P++ + +
Sbjct: 24 IKKGQQVFNAACAQCHA---LGVTRTNPDV------------NLSPEALALATPPRDNIA 68
Query: 63 TLDIYLQNPKKYIPGTKM-----------VFPGLRK--EKDREDLIAYL 98
L Y++NP Y ++ +FP +R E D ++ Y+
Sbjct: 69 ALVDYIKNPTTYDGFVEISELHPSLKSSDIFPKMRNISEDDLYNVAGYI 117
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET:
HEC; 1.92A {Paracoccus pantotrophus}
Length = 137
Score = 49.3 bits (117), Expect = 4e-09
Identities = 23/129 (17%), Positives = 34/129 (26%), Gaps = 51/129 (39%)
Query: 4 ENGKKIFTRA----CAQCHTANEGGANK----VGPNLFGVVGRQTGQAPGFDYTDANKNK 55
E G +I T C CH + + P L G R
Sbjct: 27 EEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGDR----------------- 69
Query: 56 GITWSASTLDIYLQNPKKYIPGTK-----------------------MVFPGLRKEKDRE 92
W+ + L + N K GT + + E
Sbjct: 70 ---WTEAQLRGIVANAKMTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIE 126
Query: 93 DLIAYLSTL 101
D++A+L TL
Sbjct: 127 DVVAFLVTL 135
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex,
thiosulfate oxidation, cysteine persulfide heme ligand;
HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1
PDB: 1h31_B* 1h33_B* 2oz1_B*
Length = 138
Score = 46.7 bits (110), Expect = 4e-08
Identities = 26/130 (20%), Positives = 36/130 (27%), Gaps = 51/130 (39%)
Query: 3 VENGKKIFTR----ACAQCHTANEGGANK----VGPNLFGVVGRQTGQAPGFDYTDANKN 54
G+++ T C CH E + VGP+L GV R
Sbjct: 27 PVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAAR---------------- 70
Query: 55 KGITWSASTLDIYLQNPKKYIPGTK-----------------------MVFPGLRKEKDR 91
+ + + L N K P T L
Sbjct: 71 ----YPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQI 126
Query: 92 EDLIAYLSTL 101
ED++AYL TL
Sbjct: 127 EDVVAYLMTL 136
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H
binding protein complex; HET: CSS HEC; 1.77A {Starkeya
novella} PDB: 3ocd_B*
Length = 208
Score = 47.2 bits (111), Expect = 6e-08
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 20/93 (21%)
Query: 14 CAQCHT--ANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNP 71
C CH E +GP+L G G+ F DA + +
Sbjct: 125 CYACHQLDPKEVSYGTLGPSLVGY-----GRERNFSAEDAKIAFAKVY----------DA 169
Query: 72 KKYIPGTKM-VF--PGLRKEKDREDLIAYLSTL 101
+ + + M F G+ E+ +D++AYL
Sbjct: 170 QASLACSSMPRFGVNGVLTEQQIKDVVAYLFDP 202
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM
resolution, electron transport; HET: HEM; 0.97A
{Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A*
1k3g_A* 1k3h_A* 1n9c_A*
Length = 71
Score = 42.1 bits (99), Expect = 6e-07
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 28/97 (28%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
+ + + + C CH + GA P + +S +
Sbjct: 2 DAEAVVQQKCISCHGGDLTGA--SAPAIDKAGAN--------------------YSEEEI 39
Query: 65 DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ N + +P G+ K + E + A+L+
Sbjct: 40 LDIILNGQGGMP------GGIAKGAEAEAVAAWLAEK 70
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue
copper protein, oxidoreductase, electron transport; HET:
TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1
PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Length = 147
Score = 43.0 bits (101), Expect = 1e-06
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 21/101 (20%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
+ ++++ C+ CH G +GP L + Y + G+ +
Sbjct: 45 ILPEAEELYAGMCSGCHGHYAEGK--IGPGLND---------AYWTYPGNETDVGLFSTL 93
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
G G + +A++ L+
Sbjct: 94 ----------YGGATGQMGPMWGSLTLDEMLRTMAWVRHLY 124
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM;
1.50A {Phaeodactylum tricornutum}
Length = 88
Score = 37.9 bits (88), Expect = 4e-05
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
V G++IF CA CH GG N + P + ++ +
Sbjct: 3 VGAGEQIFNANCAACHA---GGQNVIMPE------------KTLEKEALDQYLAGGRTEK 47
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAY 97
++ + K +P F G +++ ++ AY
Sbjct: 48 SIISQVTGGKNAMPA----FGGRLSDEEIANVAAY 78
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM;
1.98A {Hyphomicrobium denitrificans}
Length = 170
Score = 38.0 bits (88), Expect = 1e-04
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 21/101 (20%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
+ G++I+ +C+ CH G VGP L + Y +KG+ +
Sbjct: 47 CLPKGEEIYLESCSGCHGHIGEGK--VGPGLND---------SYWTYPKNTTDKGLFET- 94
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
G + + LIA++ +
Sbjct: 95 ---------IFGGANGMMGPHGQDLELDNMLKLIAWIRHIQ 126
Score = 30.7 bits (69), Expect = 0.044
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVG-PNL 32
+ KK F + A A + +
Sbjct: 137 SDEQKKNFKPFDIKAWEATGKAAAEKAQCKI 167
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification,
oxidoreductase/electron transport complex; HET: HEM;
1.70A {Achromobacter xylosoxidans}
Length = 87
Score = 36.5 bits (84), Expect = 1e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1 MSVENGKKIFTRACAQCHTANEGGANKVG 29
G+K++ AC CH + A K+G
Sbjct: 7 QLDPAGEKLYRSACVVCHASGVANAPKLG 35
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria,
photosynthesis, electron transport; HET: HEM; 2.70A
{Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Length = 89
Score = 36.4 bits (84), Expect = 1e-04
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
V G +F+ CA CH L + + D + +
Sbjct: 3 VAAGASVFSANCAACH-MGGRNVIVANKTLSKSDLAKYLKGFDDD------------AVA 49
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAY 97
+ + N K +PG F G ED+ AY
Sbjct: 50 AVAYQVTNGKNAMPG----FNGRLSPLQIEDVAAY 80
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A
{Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Length = 85
Score = 36.4 bits (84), Expect = 1e-04
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLF 33
++NG+K+F+ CA CH GG N + P+
Sbjct: 3 LDNGEKVFSANCAACHA---GGNNAIMPDKT 30
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD
phasing, dissimilatory metal reduction, electron
transport; HET: HEM; 1.86A {Geobacter sulfurreducens}
Length = 99
Score = 36.5 bits (84), Expect = 2e-04
Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 20/96 (20%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
G ++F CA CH G L G D
Sbjct: 19 NSGGGELFATHCAGCH-PQGGNTVHPEKTLARARREANGIRTVRDVAAY----------- 66
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
++NP +P + D + Y+
Sbjct: 67 -----IRNPGPGMPAFG---EAMIPPADALKIGEYV 94
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome,
electron transport, GRAM negative, bacteria; HET: HEC;
NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB:
1kx7_A*
Length = 81
Score = 36.1 bits (83), Expect = 2e-04
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVG 29
+++ + I+ +AC CH+ GA K
Sbjct: 2 DLQDAEAIYNKACTVCHSMGVAGAPKSH 29
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer
electron transport, heme, iron, metal-binding,
thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Length = 93
Score = 36.5 bits (84), Expect = 2e-04
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 14/95 (14%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
G ++F CA CH +T +A A G
Sbjct: 3 AAAGAQVFAANCAACHAGGNNAVM----------PTKTLKADALKTYLAGYKDGSKSLEE 52
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAY 97
+ + N + +P F G + D ++ AY
Sbjct: 53 AVAYQVTNGQGAMPA----FGGRLSDADIANVAAY 83
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A
{Azotobacter vinelandii} SCOP: a.3.1.1
Length = 83
Score = 35.7 bits (82), Expect = 2e-04
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPN 31
+G + + C CH A KVG +
Sbjct: 6 SGDDVVAKYCNACHGTGLLNAPKVGDS 32
>1c6r_A Cytochrome C6; electron transport protein, reduced state,
photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus}
SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Length = 89
Score = 36.0 bits (83), Expect = 2e-04
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNL 32
+ GK+ F CA CH GG N V P+
Sbjct: 4 LALGKQTFEANCAACH---AGGNNSVIPDH 30
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit;
flavocytochrome, electron-transfer, FAD, heme,
oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas
putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Length = 80
Score = 35.6 bits (82), Expect = 3e-04
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNLFG 34
+GK ++ + C CH VGP L G
Sbjct: 6 SGKNLYDKVCGHCH----KPEVGVGPVLEG 31
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET:
HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A*
451c_A* 1dvv_A*
Length = 82
Score = 35.5 bits (82), Expect = 3e-04
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 19/99 (19%)
Query: 4 ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
E+ + + C CH + VGP V + GQA
Sbjct: 1 EDPEVLAKNKGCVACHAID---TKMVGPAYKDVAAKFAGQAGAEAE-------------- 43
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
L ++N + + G + P + + + L ++ +
Sbjct: 44 -LAQRIKNGSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQ 81
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding;
HET: HEM; 1.6A {Methylobacterium extorquens} SCOP:
a.3.1.1
Length = 172
Score = 36.6 bits (84), Expect = 4e-04
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFG 34
+ NG+ +F +C+ CH G +GP L
Sbjct: 53 CLRNGESLFATSCSGCHGHLAEGK--LGPGLND 83
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron
transport protein (cytochrome); HET: HEM; 1.90A
{Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Length = 90
Score = 35.2 bits (81), Expect = 5e-04
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNL 32
+ G ++F CA CH GG N V P
Sbjct: 3 LALGAQVFNGNCAACHM---GGRNSVMPEK 29
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet,
protoporphyrin IX containing Fe, heme, HAEM, electron
transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP:
a.3.1.1
Length = 91
Score = 34.4 bits (79), Expect = 9e-04
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFG 34
+ +GKK+F CA CH L
Sbjct: 6 LADGKKVFAGNCAACHLGGNNSVLA-DKTLKK 36
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas
stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Length = 82
Score = 34.3 bits (79), Expect = 9e-04
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 4 ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
++G+ +F CA CH+ + VGP L V A KN G+ +A
Sbjct: 1 QDGEALFKSKPCAACHSVD---TKMVGPALKEV---------------AAKNAGVEGAAD 42
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
TL ++++N + + G + P E++ + L ++ +L
Sbjct: 43 TLALHIKNGSQGVWGPIPMPPNPVTEEEAKILAEWVLSL 81
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron,
thylakoid, photosynthesis, metal-binding, electron
transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB:
2ce1_A* 2dge_A* 2v07_A*
Length = 105
Score = 34.6 bits (79), Expect = 0.001
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLF 33
++ G +F RACA CH G + G LF
Sbjct: 5 IQRGATLFNRACAACHDTG-GNIIQPGATLF 34
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron
transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP:
a.3.1.1 PDB: 1a8c_A*
Length = 81
Score = 33.9 bits (78), Expect = 0.001
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 21/90 (23%)
Query: 14 CAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK 73
C CH VGP L + + + Y L ++
Sbjct: 10 CIACHQVE---TKVVGPALKDIAAKYADKDDAATY---------------LAGKIKGGSS 51
Query: 74 YIPG-TKM-VFPGLRKEKDREDLIAYLSTL 101
+ G M + + D + L ++ TL
Sbjct: 52 GVWGQIPMPPNVNV-SDADAKALADWILTL 80
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron
transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Length = 85
Score = 33.7 bits (77), Expect = 0.001
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNL 32
G ++F CA CH G N V P
Sbjct: 5 GAGGGELFATHCAGCHP---QGGNTVHPEK 31
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid;
HET: HEM; 1.40A {Phormidium laminosum} PDB: 2v08_A*
1c6s_A*
Length = 86
Score = 33.7 bits (77), Expect = 0.001
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 3 VENGKKIFTRACAQCHTANEGGAN 26
+ G K+F+ CA CH N
Sbjct: 4 LATGAKVFSANCAACHAGGINLVN 27
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.001
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 25/77 (32%)
Query: 39 QTGQAPG---------------FDYTDA--NKNKGITWSASTLDIYLQNPKKYIPGTKMV 81
Q Q G ++ D G S LDI + NP +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF----SILDIVINNPVNLT----IH 1675
Query: 82 FPGLRKEKDREDLIAYL 98
F G + ++ RE+ A +
Sbjct: 1676 FGGEKGKRIRENYSAMI 1692
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices,
oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas
stutzeri}
Length = 311
Score = 35.1 bits (80), Expect = 0.002
Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 23/104 (22%)
Query: 1 MSVENGKKIFTRACAQCHTAN-EGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITW 59
+ GK ++ + CA CH EG A P L A
Sbjct: 220 ADLSAGKNVYAQTCAVCHGQGGEGMAALGAPKL-------NSAAG--WIY---------- 260
Query: 60 SASTLDIYLQNPKKYIPGTKMVFPGLR-KEKDREDLIAYLSTLH 102
S+L Q + G M + L AY+ +L
Sbjct: 261 -GSSLGQLQQTIRHGRNGQ-MPAQQQYLGDDKVHLLAAYVYSLS 302
Score = 33.9 bits (77), Expect = 0.004
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDAN 52
V+ G ++F C+ CH ++ G+ PNL R G A + N
Sbjct: 132 VKMGARLFANYCSICHGSDAKGS-LGFPNLADQDWRWGGDAASIKTSILN 180
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium,
electron transport; HET: HEM; NMR {Halorhodospira
halophila} SCOP: a.3.1.1
Length = 78
Score = 32.8 bits (75), Expect = 0.003
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 5 NGKKIFTRA----CAQCHTANEGGANKVG 29
+G+ I+ C+ CH GA ++
Sbjct: 1 DGESIYINGTAPTCSSCHDRGVAGAPELN 29
>1fcd_C Flavocytochrome C sulfide dehydrogenase (cytochrome subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: a.3.1.4 a.3.1.4
Length = 174
Score = 32.5 bits (74), Expect = 0.011
Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 25/103 (24%)
Query: 4 ENGKKIFTRACAQCHTANEGGANKVG--PNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
+ G K+ + C +CH L GQ Y
Sbjct: 91 DTGAKLHDKYCEKCHVEGGKPLADEEDYHIL-------AGQWT--PYL-----------Q 130
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRK---EKDREDLIAYLSTL 101
+ + + + L K + + L A+ ++
Sbjct: 131 YAMSDFREERRPMEKKMASKLRELLKAEGDAGLDALFAFYASQ 173
Score = 25.6 bits (56), Expect = 2.9
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 8 KIFTRACAQCHTANEGGANKVGPNLFG 34
++ T CA CH + P++
Sbjct: 5 EMLTNNCAGCHGTHGNSVGPASPSIAQ 31
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 31.9 bits (72), Expect = 0.022
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNL 32
VE G ++ C CH PNL
Sbjct: 591 AKVEAGTMLYVANCVFCHGVPGVDRGGNIPNL 622
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system,
sulfa oxidation, molybdenum cofactor, heme, electron
transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Length = 205
Score = 31.1 bits (69), Expect = 0.039
Identities = 18/103 (17%), Positives = 25/103 (24%), Gaps = 15/103 (14%)
Query: 1 MSVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWS 60
V G +F CA CH G + G K G W
Sbjct: 33 GDVATGDALFADNCASCHGDFAEGLDSWPVLAGGDGSLTDP--------RPVKTIGSYWP 84
Query: 61 ASTLDIYLQNPKKYIPGTKMVF-PGLRKEKDREDLIAYLSTLH 102
YL Y+ + D + A+L +
Sbjct: 85 ------YLSTVYDYVHRSMPFGSAQTLSVDDTYAITAFLLYSN 121
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A
{Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB:
1etp_A* 1m6z_A*
Length = 190
Score = 29.9 bits (67), Expect = 0.097
Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 23/94 (24%)
Query: 12 RACAQCHTAN-EGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQN 70
AC CH N G P L GQ YT A L + +
Sbjct: 117 PACTGCHAPNGVGNDLAGFPKL-------GGQHA--AYT-----------AKQLTDFREG 156
Query: 71 PKKYIPGTKMVFPGLRK--EKDREDLIAYLSTLH 102
+ T ++ K KD E L +Y+ LH
Sbjct: 157 NRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH 190
Score = 28.3 bits (63), Expect = 0.35
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFG 34
E G+ C CH + P L G
Sbjct: 4 AEAGQGKVA-VCGACHGVDGNSPAPNFPKLAG 34
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET:
HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1
PDB: 1ynr_A* 2ai5_A*
Length = 80
Score = 28.9 bits (65), Expect = 0.11
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 19/96 (19%)
Query: 7 KKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
+++ + C CH KVGP V A K G + L
Sbjct: 2 EQLAKQKGCMACHDLKAK---KVGPAYADV---------------AKKYAGRKDAVDYLA 43
Query: 66 IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
++ + G+ + P + + + L ++ ++
Sbjct: 44 GKIKKGGSGVWGSVPMPPQNVTDAEAKQLAQWILSI 79
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET:
HEC; 1.92A {Paracoccus denitrificans}
Length = 264
Score = 29.7 bits (66), Expect = 0.13
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 3 VENGKKIF-------TRACAQCHTANEGG 24
E+GK+I+ +CA CH N G
Sbjct: 162 WEHGKEIYYTRYGQLEMSCANCHEDNAGN 190
>1c52_A Cytochrome-C552; electron transport protein, MAD,
thermostability; HET: HEM; 1.28A {Thermus thermophilus}
SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A*
1dt1_A*
Length = 131
Score = 28.2 bits (63), Expect = 0.27
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNLFG 34
+G KI+ + CA CH N G P L G
Sbjct: 3 DGAKIYAQ-CAGCHQQNGQGIPGAFPPLAG 31
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 28.7 bits (64), Expect = 0.27
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGI 57
+ G++++ C CH AN G P L DY + N G+
Sbjct: 339 IRFGQRVYEANCMACHQANGEGIPGAFPPLAKS-----------DYLNNNPLLGV 382
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Length = 689
Score = 28.8 bits (64), Expect = 0.27
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 26/98 (26%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S+E G K++ C+QCH G+ G P K++ +
Sbjct: 594 SIEAGAKLYDGYCSQCH---------------GIHAVSGGVLPDLRKLTPEKHQ--MFLG 636
Query: 62 STLDIYLQNPKKYIPGTKMV-FPGLRKEKDREDLIAYL 98
+ + G M F + + + YL
Sbjct: 637 ILFGGRVPD------G--MPSFADAFTPEQVDQIHQYL 666
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A
{Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A*
1dwl_B* 1e08_E* 2dvh_A*
Length = 79
Score = 27.3 bits (61), Expect = 0.37
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 5 NGKKIFTRACAQCHTAN-EGGANKVGPNLFG 34
+G ++ ++C CH A+ A VG + G
Sbjct: 2 DGAALY-KSCVGCHGADGSKQAMGVGHAVKG 31
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone
cofactor, oxidoreductase-electron transport complex;
HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB:
3sle_A* 3svw_A* 3l4m_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A*
3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Length = 373
Score = 27.8 bits (62), Expect = 0.59
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 3 VENGKKIF---------TRACAQCHTANEGGA--NKVGPNL---FGVVGRQTG 41
G ++F T++CA CH + L G G+ G
Sbjct: 11 AALGAQLFVDPALSRNATQSCATCHDPARAFTDPREGKAGLAVSVGDDGQSHG 63
Score = 24.4 bits (53), Expect = 9.1
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 4 ENGKKIFTRA-CAQCHTANEGGANKVGPNLFG 34
E G +F C CH + G + F
Sbjct: 190 EFGYTVFITWNCRLCHMQRKQGVAE--RETFT 219
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3
f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D*
1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D*
1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D*
3bcc_D* ...
Length = 241
Score = 27.8 bits (61), Expect = 0.61
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 2 SVENGKKIFTRACAQCHTAN 21
S+ G +++ + C+ CH+ +
Sbjct: 25 SIRRGFQVYKQVCSSCHSMD 44
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY
structure, multiwavelength anomalous dispersion, heme;
HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus}
SCOP: a.3.1.1
Length = 87
Score = 26.8 bits (60), Expect = 0.66
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFG 34
+E GK CA CH N + PNL G
Sbjct: 4 IEAGKAKAA-VCAACHGQNGISQVPIYPNLAG 34
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas
putida} SCOP: a.3.1.6 b.70.1.1
Length = 668
Score = 27.6 bits (61), Expect = 0.71
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNL 32
V+ GK+++ + C+ CH + + P+L
Sbjct: 579 QVQAGKQLYGQFCSVCHGMG-TISGGLIPDL 608
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC;
1.80A {Vibrio parahaemolyticus}
Length = 103
Score = 27.0 bits (60), Expect = 0.73
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFG 34
G+ CA CH A+ PNL G
Sbjct: 24 AAAGQAKAA-VCAACHGADGNATIPGYPNLKG 54
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax
complex, thiosulfate oxidation, cysteine persulfide heme
ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP:
a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Length = 261
Score = 27.4 bits (60), Expect = 0.83
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 3 VENGKKIFTR-------ACAQCHTANEGGANKVGPNLFGVVGRQ 39
VE + ++ R ACA CH A + G + V
Sbjct: 58 VEEARAVWDRPEGTEGKACADCHGAVDDGMYGLRAVYPKYVESA 101
Score = 26.6 bits (58), Expect = 1.6
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 7/29 (24%)
Query: 3 VENGKKIF-------TRACAQCHTANEGG 24
E G++I+ +CA CH
Sbjct: 159 WEKGREIYYTRYGQLDLSCASCHEQYFDH 187
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14
b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Length = 494
Score = 27.4 bits (60), Expect = 0.83
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 4 ENGKKIFTRACAQCHTANEGGA 25
E G + C CH
Sbjct: 2 EQGPSLLQNKCMGCHIPEGNDT 23
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron
transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D*
2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Length = 248
Score = 27.0 bits (59), Expect = 1.1
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 2 SVENGKKIFTRACAQCHTAN 21
S+ G +++ CA CH+ +
Sbjct: 28 SIRRGYQVYREVCAACHSLD 47
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC;
2.70A {Paracoccus denitrificans}
Length = 263
Score = 26.5 bits (58), Expect = 1.4
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 2 SVENGKKIFTRACAQCHTAN 21
++ G +++T C+ CH
Sbjct: 46 QLQRGLQVYTEVCSACHGLR 65
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 26.5 bits (59), Expect = 1.6
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 75 IPGTKMVFPGLRKEKDREDLI 95
+PG K+ P + +KDR D++
Sbjct: 211 LPGCKVHLPII-GDKDRHDIV 230
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein,
rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A
{Rhodobacter capsulatus}
Length = 258
Score = 26.5 bits (58), Expect = 1.6
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 2 SVENGKKIFTRACAQCHTAN 21
+ G +++ C+ CH
Sbjct: 22 QLRRGFQVYNEVCSACHGMK 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 1.7
Identities = 6/19 (31%), Positives = 7/19 (36%), Gaps = 4/19 (21%)
Query: 68 LQNP-KKYIPGTKMVFPGL 85
LQ K Y + P L
Sbjct: 25 LQASLKLYADDSA---PAL 40
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping;
HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP:
a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A*
1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Length = 543
Score = 26.6 bits (59), Expect = 1.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQA 43
K+I+ + CA CH GA G L + +Q GQ
Sbjct: 37 NEAKQIYFQRCAGCHGVLRKGA--TGKPLTPDITQQRGQQ 74
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 26.3 bits (59), Expect = 1.7
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 75 IPGTKMVFPGLRKEKDREDLI 95
+PG + P L EKD++DLI
Sbjct: 160 LPGVSIALPAL-AEKDKQDLI 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase,
denitrification, electron transport, periplasmic; HET:
HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2
b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A*
1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Length = 567
Score = 26.7 bits (59), Expect = 1.7
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQA 43
KI+ CA CH GA G L + R G
Sbjct: 55 NEANKIYFERCAGCHGVLRKGA--TGKALTPDLTRDLGFD 92
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14
b.1.18.14 b.61.4.1 PDB: 1jju_A*
Length = 489
Score = 26.6 bits (58), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 5 NGKKIFTRACAQCHTANEGGA 25
G+++ ACA CH +E G
Sbjct: 2 TGEEVLQNACAACHVQHEDGR 22
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme;
HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP:
a.3.1.4 a.3.1.4
Length = 183
Score = 26.0 bits (57), Expect = 2.2
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 3 VENGKKIFTRACAQCHTAN-EGGANKVGPNLFG 34
++ + C CH + P L G
Sbjct: 6 APAPYRVSS-DCMVCHGMTGRDTLYPIVPRLAG 37
Score = 24.8 bits (54), Expect = 5.9
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 13 ACAQCHTANEGGANKVGPNLFG 34
AC +CH ++ G P L G
Sbjct: 118 ACMECHGSD-GQGAGPFPRLAG 138
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1
C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP
UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B*
2qjp_B* 2qjk_B*
Length = 269
Score = 26.1 bits (57), Expect = 2.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 2 SVENGKKIFTRACAQCHTAN 21
++ G +++T CA CH
Sbjct: 24 QLQRGLQVYTEVCAACHGMK 43
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 25.7 bits (57), Expect = 2.9
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 75 IPGTKMVFPGLRKEKDREDLI 95
+PGT + P L EKD+EDL
Sbjct: 181 LPGTDVDLPAL-SEKDKEDLR 200
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 25.6 bits (57), Expect = 3.5
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 75 IPGTKMVFPGLRKEKDREDLI 95
+PG ++ PG+ EKD ED+
Sbjct: 181 LPGVRVSLPGI-TEKDAEDIR 200
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 25.6 bits (57), Expect = 3.6
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 75 IPGTKMVFPGLRKEKDREDLI 95
+PG + P + KDR DL
Sbjct: 180 LPGCDVDLPAV-SAKDRVDLQ 199
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 25.6 bits (57), Expect = 3.7
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 75 IPGTKMVFPGLRKEKDREDLI 95
+PG K+ PG+ EKDR D++
Sbjct: 161 VPGVKVNLPGI-TEKDRADIL 180
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A
{Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Length = 345
Score = 25.4 bits (56), Expect = 4.3
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 9/32 (28%)
Query: 3 VENGKKIF---------TRACAQCHTANEGGA 25
VE GK ++ +C CH GG
Sbjct: 53 VELGKMLYFDPRLSASHLISCNTCHNVGLGGG 84
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 25.2 bits (56), Expect = 4.3
Identities = 5/20 (25%), Positives = 7/20 (35%), Gaps = 1/20 (5%)
Query: 75 IPGTKMVFPGLRKEKDREDL 94
+ G E+D E L
Sbjct: 169 VEGKDYDISTP-AEEDVEAL 187
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision,
ammonia-oxidizing bacteria, oxidoreductase; HET: HEM;
1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Length = 308
Score = 24.9 bits (55), Expect = 4.7
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 9/32 (28%)
Query: 3 VENGKKIF---------TRACAQCHTANEGGA 25
E GK +F +C CH + GG
Sbjct: 19 AELGKMLFFDPRLSKSGFISCNSCHNLSMGGT 50
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 25.2 bits (56), Expect = 4.8
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 75 IPGTKMVFPGLRKEKDREDLI 95
+P K+ P + EKD+ D++
Sbjct: 204 LPNVKVDLPII-SEKDKNDIL 223
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 25.5 bits (53), Expect = 4.8
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 11 TRACAQCHTANEGGANKVGPNLFGVVGRQ 39
CA CH P L +Q
Sbjct: 490 PPKCASCHGKPFDADRGDRPGLKAAYHQQ 518
Score = 25.1 bits (52), Expect = 5.3
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGP 30
S K+I+ C CHT K GP
Sbjct: 102 SAAELKEIYHANCIGCHTDLAKAGKKTGP 130
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 25.2 bits (56), Expect = 4.9
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 75 IPGTKMVFPGLRKEKDREDLI 95
+P K+ P + EKD+ D++
Sbjct: 195 LPNVKVQLPVI-GEKDKHDIL 214
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET:
HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Length = 92
Score = 24.5 bits (52), Expect = 5.0
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 1 MSVENGKKIFTRACAQCHT 19
+ KK+ C +CHT
Sbjct: 25 FDFDAAKKLVDVRCNKCHT 43
>1ofw_A 9HCC, nine-heme cytochrome C; electron transport, multiheme
cytochrome C, electron transfer, electron transpor; HET:
HEC GOL; 1.5A {Desulfovibrio desulfuricans} SCOP:
a.138.1.1 PDB: 1ofy_A* 19hc_A* 1duw_A*
Length = 296
Score = 25.3 bits (53), Expect = 5.0
Identities = 10/29 (34%), Positives = 10/29 (34%)
Query: 11 TRACAQCHTANEGGANKVGPNLFGVVGRQ 39
C CHT AN PNL Q
Sbjct: 238 PPKCGSCHTKEIDKANPGRPNLMAAYHLQ 266
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide,
oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Length = 320
Score = 25.0 bits (55), Expect = 5.2
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 3 VENGKKIF---------TRACAQCHTANEGGA 25
VE GK +F +C CH + GG
Sbjct: 27 VELGKMLFFEPRLSKSGFISCNSCHNLSTGGV 58
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron
transport; HET: HEM CIT; 2.20A {Marinobacter
hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB:
1rz5_A* 1rz6_A*
Length = 326
Score = 25.0 bits (55), Expect = 5.5
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 9/32 (28%)
Query: 3 VENGKKIF---------TRACAQCHTANEGGA 25
VE GK F +C CH GG
Sbjct: 31 VELGKMEFFEPRLSSSHLISCNTCHNVGLGGD 62
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme,
oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus
pantotrophus} PDB: 2c1u_A*
Length = 338
Score = 25.0 bits (55), Expect = 5.6
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 9/32 (28%)
Query: 3 VENGKKIF---------TRACAQCHTANEGGA 25
+E GK +F +C CH GG
Sbjct: 45 IELGKVLFFDPRMSSSGLISCQTCHNVGLGGV 76
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding,
oxidoreduc electron transport; HET: HEC; 2.3A
{Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB:
1eb7_A*
Length = 323
Score = 25.0 bits (55), Expect = 5.7
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 3 VENGKKIF---------TRACAQCHTANEGGA 25
E GKK+F +C CH GGA
Sbjct: 31 RELGKKLFFDPRLSRSHVLSCNTCHNVGTGGA 62
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A
1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A*
1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A*
2vgg_A* ...
Length = 550
Score = 25.0 bits (55), Expect = 5.9
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 75 IPGTKMVFPGLRKEKDREDLI 95
+PG + P + EKD +DL
Sbjct: 230 LPGAAVDLPAV-SEKDIQDLK 249
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite
oxidase, molybdopterin, C-type cytochrome, heme,
electron transport; HET: MSS HEC; 1.8A {Starkeya
novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Length = 81
Score = 23.8 bits (51), Expect = 6.4
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 6 GKKIFTRACAQCHTAN 21
G + CA CH+ +
Sbjct: 21 GFEAAQNNCAACHSVD 36
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 24.5 bits (53), Expect = 6.6
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 15 AQCHTANEG------GANKVGPNLFGVVGRQTGQA-PGFDYTDANKNKGI 57
A T +EG G + VG L G +A P +A GI
Sbjct: 138 ADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGI 187
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC;
2.70A {Rhodobacter capsulatus}
Length = 328
Score = 24.6 bits (54), Expect = 8.2
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 9/32 (28%)
Query: 3 VENGKKIF---------TRACAQCHTANEGGA 25
++ G +F +C CH GG
Sbjct: 34 IDLGAMLFFDPRMSKSGVFSCQSCHNVGLGGV 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.407
Gapped
Lambda K H
0.267 0.0316 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,529,678
Number of extensions: 76349
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 119
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)