RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14949
(102 letters)
>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis
[TaxId: 1079]}
Length = 107
Score = 127 bits (320), Expect = 2e-40
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+G+++F + C CH+ G NKVGP L G+ GR +G GF Y+DANKN GITW+
Sbjct: 3 AASGEQVF-KQCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEE 61
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
Y+++PK IPGTKM+F G++ E+ DLIAY+
Sbjct: 62 VFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQF 100
>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 108
Score = 120 bits (303), Expect = 7e-38
Identities = 56/100 (56%), Positives = 67/100 (67%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
S + G +F C QCHT +GG +KVGPNL G+ GR +GQA G+ YTDAN K + W
Sbjct: 7 SAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDE 66
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ + YL NPKKYIPGTKM F GL+KEKDR DLI YL
Sbjct: 67 NNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans
[TaxId: 266]}
Length = 99
Score = 120 bits (302), Expect = 9e-38
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
G+K+F + C CH + + VGP+L GVVGR GF+Y+D K G W+
Sbjct: 3 PAAGEKVFGK-CKACHKLDGN--DGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPE 59
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
L +L NPK + GTKM F GL K +DR +LIAYL
Sbjct: 60 ALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQ 98
>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos
(Oryza sativa) [TaxId: 4530]}
Length = 111
Score = 118 bits (296), Expect = 8e-37
Identities = 55/99 (55%), Positives = 71/99 (71%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+ G+KIF CAQCHT ++G +K GPNL G+ GRQ+G PG+ Y+ A+KN + W +
Sbjct: 11 PKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEEN 70
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
TL YL NPKKYIPGTKMVFPGL+K ++R DLI+YL
Sbjct: 71 TLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEA 109
>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId:
1071]}
Length = 105
Score = 115 bits (289), Expect = 8e-36
Identities = 47/99 (47%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
GK +F C CHT +G NKVGP+L+GVVGR +G PG++Y++AN GI W+
Sbjct: 7 PVEGKHLFHTICITCHTDIKGA-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPD 65
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
L Y+++P+K +PGTKM +PG + R D+IAYL TL
Sbjct: 66 VLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLETL 104
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId:
34018]}
Length = 118
Score = 115 bits (288), Expect = 2e-35
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK---NKGITW 59
G+ +F + C CH N VGP L GV+ RQ G APGF+Y+ N G+ W
Sbjct: 3 PAKGEAVF-KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHW 61
Query: 60 SASTLDIYLQNPKKYIP--------------GTKMVFPGLRKEKDREDLIAYLSTL 101
+ + YL +P ++ TKMVF L E++R+D++AYL
Sbjct: 62 TPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQF 116
>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens
[TaxId: 408]}
Length = 99
Score = 112 bits (280), Expect = 2e-34
Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQ-APGFDYTDANKNKGITWSA 61
G+K F C CH N VGP L GVVG + G+ A G+ ++DA K G+TW
Sbjct: 4 AAAGEKAFAP-CKACHNFE---KNGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQ 59
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLST 100
+ L +L +PKK +PGTKMVFPG+ K +D+IAYL T
Sbjct: 60 ADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLKT 98
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna
(Thunnus thynnus) [TaxId: 8237]}
Length = 103
Score = 104 bits (260), Expect = 2e-31
Identities = 61/99 (61%), Positives = 78/99 (78%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
V GKK F + CAQCHT GG +KVGPNL+G+ GR+TGQA G+ YTDANK+KGI W+
Sbjct: 3 VAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNND 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
TL YL+NPKKYIPGTKM+F G++K+ +R+DL+AYL +
Sbjct: 63 TLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSA 101
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId:
1085]}
Length = 112
Score = 101 bits (253), Expect = 3e-30
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 13/110 (11%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDAN---KNKGITW 59
G+K+ + C CHT ++GGANKVGPNLFGV + Y+++ K KG+TW
Sbjct: 4 AAAGEKVS-KKCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTW 62
Query: 60 SASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
+ + L Y++NPK ++ +KM F K+ + E++IAYL TL
Sbjct: 63 TEANLAAYVKNPKAFVLEKSGDPKAKSKMTFKLT-KDDEIENVIAYLKTL 111
>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId:
1061]}
Length = 116
Score = 96.4 bits (239), Expect = 5e-28
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 21/116 (18%)
Query: 3 VENGKKIFTRACAQCHT------ANEGGANKVGPNLFGVVGRQTGQAPGFDYTD---ANK 53
G+K F C CH+ K GPNL+GVVGR G P F Y D A
Sbjct: 3 AAKGEKEF-NKCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALG 61
Query: 54 NKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
G W+ + Y+++P ++ T+M F K ED+ AYL+++
Sbjct: 62 ASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAFKLA---KGGEDVAAYLASV 114
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans
[TaxId: 266]}
Length = 121
Score = 88.7 bits (219), Expect = 5e-25
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 23/118 (19%)
Query: 3 VENGKKIFTRACAQCHTANEGGA------NKVGPNLFGVVGRQTGQAPGFDYTDA----- 51
G+K F C CH K GPNL+GVVGR+ GF Y +
Sbjct: 4 AAKGEKEF-NKCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVA 62
Query: 52 NKNKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
KN +TW+ + L Y+ +PK ++ TKM F + K++ D++A+L+
Sbjct: 63 EKNPDLTWTEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQN 117
>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris
[TaxId: 1076]}
Length = 114
Score = 86.4 bits (213), Expect = 4e-24
Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 22/116 (18%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNK---GITW 59
+ G+ +F + C CH N VGP L GVVGR+ G A GF Y+ N N G+ W
Sbjct: 3 AKAGEAVF-KQCMTCHR---ADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVW 58
Query: 60 SASTLDIYLQNPKKYIPG--------------TKMVFPGLRKEKDREDLIAYLSTL 101
+A + YL +P ++ TKM F L E+ R+D++AYL+TL
Sbjct: 59 TADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLATL 113
>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 124
Score = 81.1 bits (199), Expect = 6e-22
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 21/118 (17%)
Query: 3 VENGKKIFTRACAQCHTANEGGA-------NKVGPNLFGVVGRQTGQAPGFDYTDANK-- 53
E G K F + C CH + K GPNL+GVVGR G F
Sbjct: 5 PEAGAKAFNQ-CQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKE 63
Query: 54 --NKGITWSASTLDIYLQNPKKYI--------PGTKMVFPGLRKEKDREDLIAYLSTL 101
KG+ W Y+Q+P K++ KM F L+KE D ++ AYL +
Sbjct: 64 AGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQV 120
>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549
{Arthrospira maxima [TaxId: 129910]}
Length = 129
Score = 49.2 bits (116), Expect = 2e-09
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGIT-WSA 61
++ G+++F ACAQCH G + P++ P D A + +
Sbjct: 24 IKKGQQVFNAACAQCHA---LGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTY 80
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ E D ++ Y+
Sbjct: 81 DGFVEISELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQ 120
>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus
[TaxId: 146786]}
Length = 131
Score = 48.4 bits (114), Expect = 3e-09
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKN--KGITW 59
GK++F ACA CH GG K P+L P D + + K T
Sbjct: 25 QYLEGKRLFQYACASCHV---GGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTT 81
Query: 60 SASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+I +P L EKD + ++
Sbjct: 82 YDGEQEIAEVHPSLRSADIFPKMRNL-TEKDLVAIAGHI 119
>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum
sulfidophilum [TaxId: 35806]}
Length = 138
Score = 48.7 bits (115), Expect = 3e-09
Identities = 26/130 (20%), Positives = 36/130 (27%), Gaps = 51/130 (39%)
Query: 3 VENGKKIFTR----ACAQCHT----ANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKN 54
G+++ T C CH A+ VGP+L GV R
Sbjct: 27 PVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAAR---------------- 70
Query: 55 KGITWSASTLDIYLQNPKKYIPGTK-----------------------MVFPGLRKEKDR 91
+ + + L N K P T L
Sbjct: 71 ----YPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQI 126
Query: 92 EDLIAYLSTL 101
ED++AYL TL
Sbjct: 127 EDVVAYLMTL 136
>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 135
Score = 44.9 bits (105), Expect = 8e-08
Identities = 23/98 (23%), Positives = 28/98 (28%), Gaps = 4/98 (4%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGIT-WS 60
NG+KIF C QCH G K N+ + G P D A S
Sbjct: 25 QFTNGQKIFVDTCTQCHL---QGKTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKS 81
Query: 61 ASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
D Y + E D D+ Y
Sbjct: 82 YDGEDDYSELHPNISRPDIYPEMRNYTEDDIFDVAGYT 119
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId:
316]}
Length = 82
Score = 41.5 bits (96), Expect = 6e-07
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 4 ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
E+G+ +F CA CH+ + A VGP V + GQ +A
Sbjct: 1 EDGEALFKSKPCAACHSID---AKLVGPAFKEVAAKYAGQD---------------GAAD 42
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
L +++N + + G + P E++ + L ++ +
Sbjct: 43 LLAGHIKNGSQGVWGPIPMPPNPVTEEEAKILAEWILSQ 81
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 82
Score = 41.1 bits (95), Expect = 8e-07
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 19/99 (19%)
Query: 4 ENGKKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
E+ + +F C CH + VGP V + GQA
Sbjct: 1 EDPEVLFKNKGCVACHAID---TKMVGPAYKDVAAKFAGQAGAEAE-------------- 43
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
L ++N + + G + P + + + L ++ +
Sbjct: 44 -LAQRIKNGSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQ 81
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter
thermophilus [TaxId: 940]}
Length = 80
Score = 39.5 bits (91), Expect = 4e-06
Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 19/96 (19%)
Query: 7 KKIFTR-ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLD 65
+++ + C CH ++ K G + L
Sbjct: 2 EQLAKQKGCMACHDLKAKKVGPAYADVAK------------------KYAGRKDAVDYLA 43
Query: 66 IYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
++ + G+ + P + + + L ++ ++
Sbjct: 44 GKIKKGGSGVWGSVPMPPQNVTDAEAKQLAQWILSI 79
>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella
putrefaciens [TaxId: 24]}
Length = 81
Score = 37.6 bits (86), Expect = 2e-05
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNL 32
+++ + I+ +AC CH+ GA K
Sbjct: 2 DLQDAEAIYNKACTVCHSMGVAGAPKSHNTA 32
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId:
354]}
Length = 83
Score = 35.6 bits (81), Expect = 1e-04
Identities = 17/102 (16%), Positives = 24/102 (23%), Gaps = 23/102 (22%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
+G + + C CH A KVG + K +
Sbjct: 3 GARSGDDVVAKYCNACHGTGLLNAPKVGD--------------------SAAWKTRADAK 42
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDRE--DLIAYLSTL 101
LD L + D E I +S L
Sbjct: 43 GGLDGLLAQSLSGL-NAMPPKGTCADCSDDELKAAIGKMSGL 83
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus
[TaxId: 274]}
Length = 131
Score = 35.9 bits (82), Expect = 2e-04
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
+G KI+ + CA CH N G P L G V + G +Y G+
Sbjct: 3 DGAKIYAQ-CAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQ---- 57
Query: 65 DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
KY G F L K+++ ++ ++
Sbjct: 58 --IEVKGMKY-NGVMSSFAQL-KDEEIAAVLNHI 87
>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId:
915]}
Length = 81
Score = 34.9 bits (79), Expect = 2e-04
Identities = 13/97 (13%), Positives = 21/97 (21%), Gaps = 17/97 (17%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
+ C CH VGP L + + + Y
Sbjct: 1 DADLAKKNNCIACHQVETKV---VGPALKDIAAKYADKDDAATY--------------LA 43
Query: 65 DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
M + D + L ++ TL
Sbjct: 44 GKIKGGSSGVWGQIPMPPNVNVSDADAKALADWILTL 80
>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri
[TaxId: 316]}
Length = 92
Score = 34.6 bits (78), Expect = 3e-04
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 14/99 (14%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
E G+ C CH + P L G G Y S
Sbjct: 4 AEAGQGKVA-VCGACHGVDGNSPAPNFPKLAG---------QGERYLLKQLQDIKAGSTP 53
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ + G ++D ED+ AY S+
Sbjct: 54 GAPEGVGRKVLEMTG----MLDPLSDQDLEDIAAYFSSQ 88
>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 90
Score = 34.4 bits (78), Expect = 4e-04
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 19/96 (19%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+ G ++F CA CH D + +
Sbjct: 3 LALGAQVFNGNCAACHMGG---------------RNSVMPEKTLDKAALEQYLDGGFKVE 47
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
++ ++N K +P + E++ + + Y+
Sbjct: 48 SIIYQVENGKGAMPA----WADRLSEEEIQAVAEYV 79
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Arthrospira maxima [TaxId: 129910]}
Length = 88
Score = 34.4 bits (78), Expect = 4e-04
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 17/96 (17%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
V G +F+ CA CH + + +
Sbjct: 2 VAAGASVFSANCAACHMGGRNVIVA-------------NKTLSKSDLAKYLKGFDDDAVA 48
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + N K +PG F G ED+ AY+
Sbjct: 49 AVAYQVTNGKNAMPG----FNGRLSPLQIEDVAAYV 80
>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans
[TaxId: 266]}
Length = 147
Score = 35.2 bits (80), Expect = 4e-04
Identities = 11/101 (10%), Positives = 26/101 (25%), Gaps = 21/101 (20%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
+ ++++ C+ CH G G + Y + G+ +
Sbjct: 45 ILPEAEELYAGMCSGCHGHYAEGKIGPGL-----------NDAYWTYPGNETDVGLFSTL 93
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
G G + +A++ L+
Sbjct: 94 ----------YGGATGQMGPMWGSLTLDEMLRTMAWVRHLY 124
>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium
extorquens [TaxId: 408]}
Length = 149
Score = 34.5 bits (78), Expect = 6e-04
Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 21/101 (20%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
+ NG+ +F +C+ CH G G N G T
Sbjct: 30 CLRNGESLFATSCSGCHGHLAEGKLGPGLNDNYWTYPSNTTDVGLFATIFG--------- 80
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
G + IA++ L+
Sbjct: 81 ------------GANGMMGPHNENLTPDEMLQTIAWIRHLY 109
>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Bacillus pasteurii [TaxId: 1474]}
Length = 71
Score = 33.1 bits (75), Expect = 7e-04
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 28/97 (28%)
Query: 5 NGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTL 64
+ + + + C CH + GA P + +S +
Sbjct: 2 DAEAVVQQKCISCHGGDLTGA--SAPAIDKAGAN--------------------YSEEEI 39
Query: 65 DIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ N + +P G+ K + E + A+L+
Sbjct: 40 LDIILNGQGGMP------GGIAKGAEAEAVAAWLAEK 70
>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase,
C-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 97
Score = 33.7 bits (76), Expect = 8e-04
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 22/97 (22%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
VE G ++ C CH G N+ ++
Sbjct: 14 KVEAGTMLYVANCVFCHGVPGVDR---GGNIPN-----------------LGYMDASYIE 53
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ + + P + F G D E L A++
Sbjct: 54 NLPNFVFKGP--AMVRGMPDFTGKLSGDDVESLKAFI 88
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome
c subunit {Pseudomonas putida [TaxId: 303]}
Length = 74
Score = 33.0 bits (74), Expect = 0.001
Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 29/99 (29%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+GK ++ + C CH G GP L G
Sbjct: 3 WGSGKNLYDKVCGHCHKPEVGV----GPVLEG------------------------RGLP 34
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
I + + ++ + YLS+L
Sbjct: 35 EAYIKDIVRNGFRAMPAFPASYV-DDESLTQVAEYLSSL 72
>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase,
FCSD, cytochrome subunit {Purple phototrophic bacterium
(Chromatium vinosum) [TaxId: 1049]}
Length = 80
Score = 32.5 bits (73), Expect = 0.002
Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 22/98 (22%)
Query: 4 ENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAST 63
E ++ T CA CH + P++
Sbjct: 1 EPTAEMLTNNCAGCHGTHGNSVGPASPSIA--------------------QMDPMVFVEV 40
Query: 64 LDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
++ + ++ + + G D E + Y
Sbjct: 41 MEGF-KSGEIASTIMGRIAKGY-STADFEKMAGYFKQQ 76
>gi|46580227|ref|YP_011035.1|(25-103:103) cytochrome c-553
[Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough] gi|120602388|ref|YP_966788.1|
cytochrome c, class I [Desulfovibrio vulgaris subsp.
vulgaris DP4] gi|115241|sp|P04032.2|CY553_DESVH
RecName: Full=Cytochrome c-553; AltName: Full=Cytochrome
c553; AltName: Full=Low-potential cytochrome c; Flags:
Precursor gi|145083|gb|AAA23356.1| cytochrome c-553
precursor gi|407953|gb|AAA16453.1| cytochrome c553
[Desulfovibrio vulgaris] gi|46449644|gb|AAS96294.1|
cytochrome c-553 [Desulfovibrio vulgaris subsp. vulgaris
str. Hildenborough] gi|120562617|gb|ABM28361.1|
cytochrome c, class I [Desulfovibrio vulgaris subsp.
vulgaris DP4] E=7e-29 s/c=1.63 id=79% cov=101%
Length = 79
Score = 32.2 bits (72), Expect = 0.002
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 21/98 (21%)
Query: 5 NGKKIFTRACAQCHTAN-EGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAST 63
+G ++ ++C CH A+ A + G G +
Sbjct: 2 DGAALY-KSCIGCHGADGSKAAMGSAKPVKG---------QGAEELYKKMKGYADG---- 47
Query: 64 LDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ +++ + L Y+S L
Sbjct: 48 -----SYGGERKAMMTNAVKKY-SDEELKALADYMSKL 79
>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase,
C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 104
Score = 32.3 bits (72), Expect = 0.003
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 23/101 (22%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSA 61
V+ GK+++ + C+ CH + + P+L A K G+
Sbjct: 19 QVQAGKQLYGQFCSVCHGMG-TISGGLIPDLRQSSDATREHFQQIVLQGALKPLGMPSFD 77
Query: 62 STLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTLH 102
+L ++ E + Y+ +
Sbjct: 78 DSLK----------------------PEEVEQIKLYVMSRE 96
>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase,
FCSD, cytochrome subunit {Purple phototrophic bacterium
(Chromatium vinosum) [TaxId: 1049]}
Length = 94
Score = 31.8 bits (71), Expect = 0.004
Identities = 9/99 (9%), Positives = 24/99 (24%), Gaps = 15/99 (15%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+ G K+ + C +CH + + + +
Sbjct: 10 ADTGAKLHDKYCEKCHVEG---GKPLADEEDYHILAGQWTPYLQYAMSDFREERRP---- 62
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
KK + + + + L A+ ++
Sbjct: 63 -------MEKKMASKLRELLKAE-GDAGLDALFAFYASQ 93
>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId:
2743]}
Length = 86
Score = 31.6 bits (71), Expect = 0.004
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+E GK CA CH N + PNL G + + +
Sbjct: 4 IEAGKAKAA-VCAACHGQNGISQVPIYPNLAG--------------------QKEQYLVA 42
Query: 63 TLDIYLQNPKKYIPGT--KMVFPGLRKEKDREDLIAYLSTL 101
L Y ++ + L + D +L AY ++
Sbjct: 43 ALKAYKAGQRQGGQAPVMQGQATAL-SDADIANLAAYYASN 82
>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome
cd1-nitrite reductase {Paracoccus denitrificans [TaxId:
266]}
Length = 127
Score = 32.2 bits (72), Expect = 0.004
Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 22/96 (22%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
KI+ CA CH GA G L + R G + G+
Sbjct: 46 YNEANKIYFERCAGCHGVLRKGAT--GKALTPDLTRDLGFDYLQSFITYASPAGMPN--- 100
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
G + + + YL
Sbjct: 101 -----------------WGTSGELSAEQVDLMANYL 119
>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira
halophila [TaxId: 1053]}
Length = 78
Score = 31.3 bits (70), Expect = 0.004
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 5 NGKKIFTR----ACAQCHTANEGGANKVGPNL 32
+G+ I+ C+ CH GA ++
Sbjct: 1 DGESIYINGTAPTCSSCHDRGVAGAPELNAPE 32
>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Monoraphidium braunii [TaxId: 34112]}
Length = 89
Score = 31.7 bits (71), Expect = 0.004
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 19/99 (19%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+ GK +F CA CH G + ++
Sbjct: 4 LALGKAVFDGNCAACHAGG---------------GNNVIPDHTLQKAAIEQFLDGGFNIE 48
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ ++N K +P + G E + + AY+
Sbjct: 49 AIVYQIENGKGAMPA----WDGRLDEDEIAGVAAYVYDQ 83
>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans
[TaxId: 920]}
Length = 90
Score = 31.5 bits (71), Expect = 0.005
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 31/108 (28%)
Query: 2 SVENGKKIFTR--------ACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK 53
+ GK IF + AC +CH G G+ G P
Sbjct: 6 GAKEGKAIFNQGVTNEQIPACMECH---------------GSDGQGAGPFPRLAGQRYG- 49
Query: 54 NKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLSTL 101
+ L + N + + + +D+ AYLS+L
Sbjct: 50 -----YIIQQLTYF-HNGTRVNTLMNQIAKNI-TVAQMKDVAAYLSSL 90
>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri
[TaxId: 316]}
Length = 98
Score = 31.5 bits (71), Expect = 0.005
Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 33/112 (29%)
Query: 3 VENGKKIFTR--------ACAQCHTAN-EGGANKVGPNLFGVVGRQTGQAPGFDYTDANK 53
+ G+K+F AC CH N G P L GQ
Sbjct: 8 AKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKL-------GGQHAA-------- 52
Query: 54 NKGITWSASTLDIYLQNPKKYIPGTKMVFPGLRK---EKDREDLIAYLSTLH 102
++A L + + + G M+ G+ KD E L +Y+ LH
Sbjct: 53 -----YTAKQLTDF-REGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH 98
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Cyanobacterium (Synechococcus elongatus) [TaxId:
32046]}
Length = 87
Score = 31.1 bits (69), Expect = 0.006
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWS 60
+ NG K+F+ CA CH + + + K +
Sbjct: 3 LANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNAMPA 60
>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Red alga (Porphyra yezoensis) [TaxId: 2788]}
Length = 85
Score = 31.0 bits (69), Expect = 0.007
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 21/96 (21%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
++NG+K+F+ CA CH P +
Sbjct: 3 LDNGEKVFSANCAACHAGG-----------------NNAIMPDKTLKKDVLEANSMNTID 45
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ +QN K +P F G ++D ED Y+
Sbjct: 46 AITYQVQNGKNAMPA----FGGRLVDEDIEDAANYV 77
>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Green alga (Cladophora glomerata) [TaxId: 162068]}
Length = 91
Score = 30.2 bits (67), Expect = 0.014
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 19/96 (19%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
+ +GKK+F CA CH + L + +
Sbjct: 6 LADGKKVFAGNCAACHLGG-NNSVLADKTLKKDAIEKYLEGGLTLEAIKY---------- 54
Query: 63 TLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYL 98
+ N K +P + E D E + Y+
Sbjct: 55 ----QVNNGKGAMPA----WADRLDEDDIEAVSNYV 82
>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of
cytochrome cd1-nitrite reductase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 112
Score = 29.2 bits (64), Expect = 0.045
Identities = 11/63 (17%), Positives = 15/63 (23%)
Query: 3 VENGKKIFTRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSAS 62
K+I+ + CA CH GA R S+
Sbjct: 31 FNEAKQIYFQRCAGCHGVLRKGATGKPLTPDITQQRGQQYLEALITYGTPLGMPNWGSSG 90
Query: 63 TLD 65
L
Sbjct: 91 ELS 93
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Paracoccus denitrificans
[TaxId: 266]}
Length = 85
Score = 26.8 bits (59), Expect = 0.21
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 5 NGKKIFTRACAQCHTANEGGANK 27
G+++ ACA CH +E G +
Sbjct: 2 TGEEVLQNACAACHVQHEDGRWE 24
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Pseudomonas putida [TaxId:
303]}
Length = 84
Score = 26.8 bits (59), Expect = 0.23
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 4 ENGKKIFTRACAQCHTANEGGANK 27
E G + C CH
Sbjct: 1 EQGPSLLQNKCMGCHIPEGNDTYS 24
>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 199
Score = 27.3 bits (60), Expect = 0.25
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 2 SVENGKKIFTRACAQCHTAN 21
S+ G +++ CA CH+ +
Sbjct: 28 SIRRGYQVYREVCAACHSLD 47
>d1h32a2 a.3.1.8 (A:151-261) Di-heme cytochrome c SoxA {Rhodovulum
sulfidophilum [TaxId: 35806]}
Length = 111
Score = 26.8 bits (59), Expect = 0.34
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 7/40 (17%)
Query: 3 VENGKKIFTR-------ACAQCHTANEGGANKVGPNLFGV 35
E G++I+ +CA CH + G
Sbjct: 9 WEKGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQ 48
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus)
[TaxId: 9913]}
Length = 195
Score = 26.6 bits (58), Expect = 0.50
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 2 SVENGKKIFTRACAQCHTAN 21
S+ G +++ + C+ CH+ +
Sbjct: 25 SIRRGFQVYKQVCSSCHSMD 44
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans
[TaxId: 920]}
Length = 82
Score = 25.4 bits (54), Expect = 0.74
Identities = 7/89 (7%), Positives = 9/89 (10%), Gaps = 19/89 (21%)
Query: 14 CAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANKNKGITWSASTLDIYLQNPKK 73
C CH A +
Sbjct: 5 CMVCHGMTGRD------------------TLYPIVPRLAGQHKSYMEAQLKAYKDHSRAD 46
Query: 74 YIPGTKMV-FPGLRKEKDREDLIAYLSTL 101
M L Y +
Sbjct: 47 QNGEIYMWPVAQALDSAKITALADYFNAQ 75
>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 112
Score = 25.6 bits (56), Expect = 0.93
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 2 SVENGKKIFTRACAQCHTANEGGANKV 28
S + G K T +C CH A+ A +
Sbjct: 31 STQTGGKPDTPSCTTCHGADVTRAGQT 57
>d1iqca1 a.3.1.5 (A:1-150) Di-heme cytochrome c peroxidase
{Nitrosomonas europaea [TaxId: 915]}
Length = 150
Score = 25.1 bits (54), Expect = 1.3
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 3 VENGKKIF---------TRACAQCHTANEGGANKVGPNLFGVVGRQTGQAPGFDYTDANK 53
E GK +F +C CH + GG + + ++ + AP + N
Sbjct: 19 AELGKMLFFDPRLSKSGFISCNSCHNLSMGGTDNITTSIGHKWQQGPINAPTVLNSSMNL 78
>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus
methylotrophus, strain w3a1 [TaxId: 17]}
Length = 124
Score = 24.5 bits (53), Expect = 1.9
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 10/30 (33%)
Query: 2 SVENGKKIFTR----------ACAQCHTAN 21
S+ +GK F R ACA CHT N
Sbjct: 27 SITDGKIFFNRKFKTPSGKEAACASCHTNN 56
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase
{Pseudomonas nautica [TaxId: 2743]}
Length = 160
Score = 24.7 bits (53), Expect = 2.0
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 28/122 (22%)
Query: 2 SVENGKKIF-TRACAQCHTA-------------NEGGANKVGPNLFGVVGRQTGQAPGFD 47
S + G +F R C CH+ ++ P T A
Sbjct: 18 SEKEGLALFMDRGCTACHSGVNLGGQNYYPFGLVAKPGAEILPEGDKGRFSVTETASDEY 77
Query: 48 YTDANKNKGITW--------SASTLDIYLQNPKKYIPGTKMVFPGLRKEKDREDLIAYLS 99
A+ + I + +L+ + GT++ + + ++A+L
Sbjct: 78 VFRASPLRNIELTAPYFHSGAVWSLEEAVAVMGTAQLGTEL------NNDEVKSIVAFLK 131
Query: 100 TL 101
TL
Sbjct: 132 TL 133
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 159
Score = 23.2 bits (49), Expect = 7.3
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 88 EKDREDLIAYLSTL 101
D E+++A+L +L
Sbjct: 122 PDDVENIVAFLHSL 135
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase
{Nitrosomonas europaea [TaxId: 915]}
Length = 158
Score = 23.1 bits (49), Expect = 8.4
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 88 EKDREDLIAYLSTL 101
+ + ++A+L TL
Sbjct: 119 KDEVSKIVAFLKTL 132
>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 505
Score = 23.2 bits (47), Expect = 9.1
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 1 MSVENGKKIFTRACAQCHTANEGGANKVGPN 31
S K+I+ C CHT K GP
Sbjct: 62 NSAAELKEIYHANCIGCHTDLAKAGKKTGPQ 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.407
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 375,601
Number of extensions: 14711
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 60
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)