BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14950
(77 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGD 63
GH + FITHGG + EA+YHG+P V +P F+DQ N + +G + T +
Sbjct: 83 GHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXSST 142
Query: 64 ILYITIREVLNNP 76
L ++ V+N+P
Sbjct: 143 DLLNALKRVINDP 155
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIR 70
FITH G+ S+MEA+ + VP+V +P ++Q N + + E G+G P + +T + L +
Sbjct: 325 FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVL 384
Query: 71 EVLNNP 76
V ++P
Sbjct: 385 AVASDP 390
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
C + HGG S A HGVP V++P D + +E G G+ P +T D L
Sbjct: 336 CAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRE 395
Query: 68 TIREVLNNP 76
+++ VL++P
Sbjct: 396 SVKRVLDDP 404
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 12 ITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
+THGG + EA+Y G P+V++P D + +++ G+G + P E GD L
Sbjct: 318 VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGEKADGDTL 371
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 12 ITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
+THGG + EA+Y G P+V++P D + +++ G+G + P E GD L
Sbjct: 318 VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGEKADGDTL 371
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
R LF+TH G S E + P++ +P DQ N +++ G+ E T D+L
Sbjct: 298 RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLL 357
Query: 66 YITIREVLNNP 76
T ++++P
Sbjct: 358 RETALALVDDP 368
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC--KLMEEKGMGLITPHETITGD 63
R C + HGG + M A+ G+P ++ P DQ Q+ + + +G+GL++ + + D
Sbjct: 298 RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDAD 357
Query: 64 IL 65
+L
Sbjct: 358 LL 359
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC-KLMEEKGMGL 53
H+ F++H G +S +E+++ GVP++ P +++Q N +L++E G+GL
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC-KLMEEKGMGL 53
H+ F++H G +S +E+++ GVP++ P +++Q N +L++E G+GL
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME---EKGMGL 53
H + +F+TH G +S +E + GVP++ P F DQ N L E E G+G+
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV 394
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE 48
H F+TH G +S E+V GVP++ P F DQ N +++E+
Sbjct: 340 AHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVED 384
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITP 56
H + F+TH G +S++E+V G+P++ P +++Q N L+ E + P
Sbjct: 354 AHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRP 406
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC--KLMEEKGMGLITPHETITGD 63
R C + HGG + A+ G+P ++ P DQ Q+ + + +G+GL++ + + D
Sbjct: 298 RTCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDAD 357
Query: 64 IL 65
+L
Sbjct: 358 LL 359
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
F+TH G +S+ E++ GVP++ P F+DQ +C+ +
Sbjct: 375 FLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGD 63
R C+L I GG ++ A G+P +++P + DQ + + G G+ P E D
Sbjct: 285 RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSD 342
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGD 63
R C+L I GG ++ A G+P +++P + DQ + + G G+ P E D
Sbjct: 285 RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSD 342
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHE 58
C + + HGG +++ + GVP V +P ++ + +L+ G G+ P E
Sbjct: 301 CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWE 351
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 32.3 bits (72), Expect = 0.067, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHE 58
C + + HGG +++ + GVP V +P ++ + +L+ G G+ P E
Sbjct: 300 CDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWE 350
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 12 ITHGGIHSSMEAVYHGVPVVMMPGFSDQ 39
+THG + +EA GVP+V++P F+ +
Sbjct: 302 LTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 28.5 bits (62), Expect = 0.91, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGL 53
C I HGG + + A+ GVP ++P S Q N ++ G+G
Sbjct: 305 CDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGF 350
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGL 53
C I HGG + + A+ GVP ++P S Q N ++ G+G
Sbjct: 305 CDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGF 350
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 12 ITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGL 53
I HGG ++ A G P +++P +DQ + E G+G+
Sbjct: 306 IHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGV 347
>pdb|3S2U|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa
Murg:udp-Glcnac Substrate Complex
Length = 365
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVP--VVMMPGFSDQHQ--NCKLMEEKGMGLITP 56
M + L I G + E G+P +V +P D HQ N + + G G + P
Sbjct: 246 MAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLP 305
Query: 57 HETITGDILYITIREVLNNP 76
++ L + EVL +P
Sbjct: 306 QKSTGAAELAAQLSEVLMHP 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,526,215
Number of Sequences: 62578
Number of extensions: 88471
Number of successful extensions: 215
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 25
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)