Query psy14950
Match_columns 77
No_of_seqs 125 out of 1205
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 16:37:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00201 UDPGT: UDP-glucoronos 99.9 5.5E-25 1.2E-29 144.7 5.8 76 1-76 335-410 (500)
2 PHA03392 egt ecdysteroid UDP-g 99.9 1.2E-23 2.6E-28 139.6 7.1 76 1-76 358-433 (507)
3 PLN02208 glycosyltransferase f 99.9 4.2E-23 9.2E-28 135.2 7.9 76 1-76 323-402 (442)
4 PLN02670 transferase, transfer 99.9 6E-23 1.3E-27 135.3 7.4 76 1-76 351-430 (472)
5 PLN02410 UDP-glucoronosyl/UDP- 99.9 2.2E-22 4.8E-27 132.1 7.8 75 1-76 336-411 (451)
6 PLN02210 UDP-glucosyl transfer 99.9 3E-22 6.6E-27 131.6 7.2 76 1-76 336-416 (456)
7 PLN02555 limonoid glucosyltran 99.9 5.3E-22 1.2E-26 131.1 7.7 75 2-76 350-430 (480)
8 PLN02554 UDP-glycosyltransfera 99.9 2.7E-22 5.9E-27 132.5 6.3 74 1-74 354-439 (481)
9 PLN00414 glycosyltransferase f 99.9 8.1E-22 1.7E-26 129.4 8.0 76 1-76 324-403 (446)
10 PLN02992 coniferyl-alcohol glu 99.9 1.1E-21 2.3E-26 129.7 8.2 76 1-76 350-428 (481)
11 PLN02764 glycosyltransferase f 99.9 1E-21 2.2E-26 129.0 8.1 76 1-76 329-408 (453)
12 PLN02173 UDP-glucosyl transfer 99.9 7.6E-22 1.6E-26 129.6 7.4 76 1-76 329-409 (449)
13 PLN03004 UDP-glycosyltransfera 99.9 6E-22 1.3E-26 130.1 6.8 76 1-76 346-425 (451)
14 PLN02167 UDP-glycosyltransfera 99.9 6.9E-22 1.5E-26 130.4 6.9 75 2-76 353-435 (475)
15 PLN00164 glucosyltransferase; 99.9 1.2E-21 2.6E-26 129.4 7.2 76 1-76 351-432 (480)
16 PLN02448 UDP-glycosyltransfera 99.9 2.8E-21 6.1E-26 127.1 7.7 76 1-76 335-416 (459)
17 PLN02207 UDP-glycosyltransfera 99.8 2.5E-21 5.3E-26 127.7 7.1 74 1-74 344-425 (468)
18 PLN02562 UDP-glycosyltransfera 99.8 1.8E-21 3.9E-26 127.8 6.4 74 1-76 340-414 (448)
19 PLN02152 indole-3-acetate beta 99.8 5.6E-21 1.2E-25 125.6 6.4 76 1-76 339-418 (455)
20 PLN03007 UDP-glucosyltransfera 99.8 1.5E-20 3.3E-25 124.3 7.2 76 1-76 357-441 (482)
21 PLN03015 UDP-glucosyl transfer 99.8 3.5E-20 7.7E-25 122.2 7.8 74 1-74 347-425 (470)
22 COG1819 Glycosyl transferases, 99.8 3.5E-20 7.7E-25 120.5 7.3 73 4-76 297-369 (406)
23 PLN02863 UDP-glucoronosyl/UDP- 99.8 4.4E-20 9.6E-25 122.0 7.3 74 1-74 355-432 (477)
24 KOG1192|consensus 99.8 6.4E-20 1.4E-24 120.5 7.0 74 3-76 350-423 (496)
25 cd03784 GT1_Gtf_like This fami 99.8 2.3E-19 5E-24 115.3 6.7 71 5-75 302-372 (401)
26 PLN02534 UDP-glycosyltransfera 99.8 8.7E-19 1.9E-23 116.2 8.0 74 1-74 356-443 (491)
27 TIGR01426 MGT glycosyltransfer 99.8 4.3E-18 9.4E-23 109.5 7.9 71 6-76 290-360 (392)
28 PF04101 Glyco_tran_28_C: Glyc 99.7 6.1E-18 1.3E-22 98.3 3.3 71 6-76 71-145 (167)
29 PF13528 Glyco_trans_1_3: Glyc 99.7 9.2E-17 2E-21 100.6 7.5 67 6-72 249-317 (318)
30 PRK12446 undecaprenyldiphospho 99.6 1.7E-15 3.7E-20 97.1 7.7 71 6-76 251-326 (352)
31 TIGR00661 MJ1255 conserved hyp 99.6 5.4E-15 1.2E-19 93.5 7.5 68 6-76 246-315 (321)
32 COG0707 MurG UDP-N-acetylgluco 99.6 1.2E-14 2.6E-19 93.5 8.0 72 5-76 250-325 (357)
33 PRK00726 murG undecaprenyldiph 99.4 2.7E-12 5.9E-17 81.6 8.0 71 6-76 251-325 (357)
34 COG4671 Predicted glycosyl tra 99.3 2.3E-11 4.9E-16 78.1 6.5 69 6-74 293-364 (400)
35 TIGR01133 murG undecaprenyldip 99.2 1.2E-10 2.5E-15 73.6 7.7 71 6-76 249-322 (348)
36 cd03785 GT1_MurG MurG is an N- 99.2 1.4E-10 3E-15 73.3 7.8 71 6-76 251-325 (350)
37 PRK13608 diacylglycerol glucos 99.1 4.6E-10 9.9E-15 72.8 7.4 67 6-76 272-339 (391)
38 KOG3349|consensus 99.1 2.2E-10 4.7E-15 66.1 4.3 52 6-57 79-134 (170)
39 PLN02605 monogalactosyldiacylg 98.9 9E-09 2E-13 66.5 7.0 66 6-75 281-347 (382)
40 PRK13609 diacylglycerol glucos 98.9 1.6E-08 3.4E-13 65.0 7.5 67 6-76 272-339 (380)
41 TIGR03492 conserved hypothetic 98.8 2E-08 4.4E-13 65.6 7.2 67 6-76 295-365 (396)
42 TIGR03590 PseG pseudaminic aci 98.8 6.5E-09 1.4E-13 65.1 3.7 40 6-46 240-279 (279)
43 TIGR00215 lpxB lipid-A-disacch 98.6 3.6E-08 7.9E-13 64.1 3.2 70 6-76 266-348 (385)
44 COG3980 spsG Spore coat polysa 98.5 2.9E-07 6.3E-12 58.1 5.6 69 6-76 226-294 (318)
45 COG5017 Uncharacterized conser 98.5 8.5E-07 1.8E-11 50.7 5.9 51 7-57 65-123 (161)
46 PRK00025 lpxB lipid-A-disaccha 98.3 2E-06 4.3E-11 55.2 5.0 70 6-76 260-342 (380)
47 PRK05749 3-deoxy-D-manno-octul 97.9 5.5E-05 1.2E-09 49.5 6.9 67 6-76 318-389 (425)
48 cd03786 GT1_UDP-GlcNAc_2-Epime 97.9 5.6E-05 1.2E-09 48.1 6.3 63 6-76 276-338 (363)
49 COG1519 KdtA 3-deoxy-D-manno-o 97.9 5.3E-05 1.1E-09 50.1 6.0 60 11-75 327-386 (419)
50 PRK14089 ipid-A-disaccharide s 97.9 1.5E-05 3.3E-10 51.7 3.0 65 6-71 234-315 (347)
51 TIGR00236 wecB UDP-N-acetylglu 97.7 0.00039 8.5E-09 44.6 7.4 63 6-76 273-335 (365)
52 cd03814 GT1_like_2 This family 97.7 0.00025 5.4E-09 44.2 6.2 65 6-76 265-333 (364)
53 PF00534 Glycos_transf_1: Glyc 97.4 0.00094 2E-08 38.3 5.6 64 7-76 92-159 (172)
54 cd03801 GT1_YqgM_like This fam 97.3 0.00097 2.1E-08 41.0 5.4 64 7-76 275-342 (374)
55 cd03823 GT1_ExpE7_like This fa 97.3 0.002 4.4E-08 40.0 6.9 65 6-76 261-330 (359)
56 cd03820 GT1_amsD_like This fam 97.3 0.002 4.4E-08 39.5 6.6 64 7-76 252-320 (348)
57 cd05844 GT1_like_7 Glycosyltra 97.2 0.0014 2.9E-08 41.5 5.7 54 17-76 284-337 (367)
58 cd03808 GT1_cap1E_like This fa 97.2 0.0028 6E-08 39.1 6.5 65 6-76 262-330 (359)
59 cd03794 GT1_wbuB_like This fam 97.1 0.002 4.3E-08 40.1 5.8 64 7-76 294-366 (394)
60 cd03798 GT1_wlbH_like This fam 97.1 0.0044 9.4E-08 38.3 6.9 64 7-76 278-345 (377)
61 cd03795 GT1_like_4 This family 97.1 0.0042 9E-08 38.9 6.6 65 7-76 263-333 (357)
62 cd03807 GT1_WbnK_like This fam 97.0 0.0047 1E-07 38.2 6.7 62 7-76 268-333 (365)
63 cd03817 GT1_UGDG_like This fam 97.0 0.0031 6.7E-08 39.2 5.6 63 7-76 278-344 (374)
64 cd03800 GT1_Sucrose_synthase T 96.9 0.0052 1.1E-07 39.2 6.1 64 7-76 302-369 (398)
65 cd04946 GT1_AmsK_like This fam 96.8 0.0077 1.7E-07 39.5 6.3 66 6-76 309-378 (407)
66 TIGR02149 glgA_Coryne glycogen 96.7 0.011 2.5E-07 37.8 6.6 67 6-76 279-353 (388)
67 cd03822 GT1_ecORF704_like This 96.6 0.0078 1.7E-07 37.6 5.3 63 7-76 267-335 (366)
68 cd03799 GT1_amsK_like This is 96.6 0.017 3.6E-07 36.2 6.6 56 15-76 273-328 (355)
69 cd03821 GT1_Bme6_like This fam 96.6 0.016 3.6E-07 35.9 6.5 62 7-76 281-346 (375)
70 PRK15484 lipopolysaccharide 1, 96.6 0.016 3.4E-07 37.8 6.6 66 6-76 275-345 (380)
71 cd03812 GT1_CapH_like This fam 96.5 0.023 5E-07 35.7 7.2 64 7-77 266-333 (358)
72 cd04951 GT1_WbdM_like This fam 96.5 0.0049 1.1E-07 38.7 3.8 60 7-74 262-325 (360)
73 cd03825 GT1_wcfI_like This fam 96.5 0.0076 1.6E-07 37.9 4.6 65 6-76 263-331 (365)
74 TIGR03088 stp2 sugar transfera 96.4 0.016 3.6E-07 37.0 6.1 65 6-76 271-339 (374)
75 PRK09922 UDP-D-galactose:(gluc 96.4 0.036 7.8E-07 35.6 7.6 66 7-77 257-326 (359)
76 cd04962 GT1_like_5 This family 96.4 0.016 3.4E-07 36.7 5.8 64 7-76 270-337 (371)
77 cd03816 GT1_ALG1_like This fam 96.3 0.025 5.4E-07 37.3 6.4 62 6-75 313-381 (415)
78 TIGR03087 stp1 sugar transfera 96.3 0.012 2.6E-07 38.3 4.8 62 7-76 297-363 (397)
79 PLN02871 UDP-sulfoquinovose:DA 96.2 0.025 5.4E-07 37.7 6.3 65 6-76 330-401 (465)
80 TIGR03449 mycothiol_MshA UDP-N 96.2 0.027 5.9E-07 36.4 6.1 64 7-76 302-369 (405)
81 PRK15427 colanic acid biosynth 96.0 0.041 8.9E-07 36.3 6.4 64 7-76 298-372 (406)
82 cd03811 GT1_WabH_like This fam 96.0 0.037 7.9E-07 33.9 5.8 63 7-75 263-332 (353)
83 PLN02275 transferase, transfer 96.0 0.056 1.2E-06 35.0 6.8 60 6-73 305-371 (371)
84 PF04007 DUF354: Protein of un 95.9 0.11 2.3E-06 33.9 7.9 62 6-73 247-308 (335)
85 PF13692 Glyco_trans_1_4: Glyc 95.9 0.0087 1.9E-07 32.9 2.6 51 17-75 85-135 (135)
86 TIGR02472 sucr_P_syn_N sucrose 95.9 0.057 1.2E-06 35.8 6.7 63 8-76 341-407 (439)
87 cd04949 GT1_gtfA_like This fam 95.7 0.044 9.5E-07 35.0 5.4 65 7-76 278-346 (372)
88 cd03818 GT1_ExpC_like This fam 95.7 0.041 8.8E-07 35.8 5.3 53 18-76 315-367 (396)
89 cd03805 GT1_ALG2_like This fam 95.6 0.088 1.9E-06 33.7 6.7 64 6-76 298-365 (392)
90 cd03804 GT1_wbaZ_like This fam 95.6 0.047 1E-06 34.6 5.3 64 7-76 261-327 (351)
91 cd03819 GT1_WavL_like This fam 95.6 0.14 3E-06 32.1 7.3 61 7-73 263-328 (355)
92 cd03813 GT1_like_3 This family 95.2 0.073 1.6E-06 35.7 5.4 65 6-76 369-443 (475)
93 PF13844 Glyco_transf_41: Glyc 95.0 0.043 9.4E-07 37.3 3.9 51 7-57 361-415 (468)
94 PRK01021 lpxB lipid-A-disaccha 95.0 0.13 2.8E-06 36.1 6.1 69 6-76 487-572 (608)
95 cd03792 GT1_Trehalose_phosphor 94.9 0.11 2.5E-06 33.3 5.5 63 6-76 272-338 (372)
96 PRK15179 Vi polysaccharide bio 94.8 0.24 5.3E-06 35.3 7.2 64 7-74 591-658 (694)
97 PF02684 LpxB: Lipid-A-disacch 94.8 0.068 1.5E-06 35.3 4.2 70 6-76 259-341 (373)
98 PF13524 Glyco_trans_1_2: Glyc 94.6 0.19 4E-06 26.1 5.0 54 14-76 9-63 (92)
99 PRK04885 ppnK inorganic polyph 94.5 0.24 5.2E-06 31.3 6.0 28 7-34 35-68 (265)
100 PRK10017 colanic acid biosynth 94.1 0.56 1.2E-05 31.6 7.4 67 6-76 326-393 (426)
101 PF02350 Epimerase_2: UDP-N-ac 94.1 0.14 3E-06 33.3 4.5 62 6-75 257-318 (346)
102 PRK02649 ppnK inorganic polyph 93.9 0.33 7.2E-06 31.3 5.9 28 7-34 68-99 (305)
103 cd03796 GT1_PIG-A_like This fa 93.9 0.4 8.7E-06 31.2 6.4 61 7-75 269-333 (398)
104 PRK10307 putative glycosyl tra 93.9 0.45 9.8E-06 31.0 6.6 53 18-76 322-374 (412)
105 PRK02155 ppnK NAD(+)/NADH kina 93.7 0.45 9.8E-06 30.4 6.2 28 7-34 63-94 (291)
106 PLN02846 digalactosyldiacylgly 93.7 0.4 8.6E-06 32.7 6.2 60 7-75 300-363 (462)
107 PRK14077 pnk inorganic polypho 93.5 0.47 1E-05 30.4 6.1 28 7-34 64-95 (287)
108 cd01635 Glycosyltransferase_GT 93.5 0.16 3.5E-06 29.4 3.8 31 7-37 181-215 (229)
109 PRK09814 beta-1,6-galactofuran 93.3 0.41 8.8E-06 30.7 5.6 47 18-72 251-297 (333)
110 PLN02501 digalactosyldiacylgly 93.0 0.46 1E-05 34.3 5.9 62 6-76 617-682 (794)
111 PRK01911 ppnK inorganic polyph 92.9 0.64 1.4E-05 29.8 6.0 28 7-34 64-95 (292)
112 PRK03372 ppnK inorganic polyph 92.8 0.61 1.3E-05 30.1 5.8 29 7-35 72-104 (306)
113 TIGR02468 sucrsPsyn_pln sucros 92.8 0.57 1.2E-05 35.0 6.2 63 8-76 572-638 (1050)
114 cd03809 GT1_mtfB_like This fam 92.7 0.21 4.6E-06 31.1 3.7 52 17-76 286-337 (365)
115 PHA01633 putative glycosyl tra 92.7 0.56 1.2E-05 30.6 5.6 67 6-74 222-306 (335)
116 PRK03708 ppnK inorganic polyph 92.6 0.56 1.2E-05 29.8 5.4 29 7-35 57-88 (277)
117 PRK04539 ppnK inorganic polyph 92.6 0.57 1.2E-05 30.1 5.5 28 7-34 68-99 (296)
118 TIGR03713 acc_sec_asp1 accesso 92.2 0.11 2.4E-06 35.6 2.1 59 7-76 428-489 (519)
119 PRK03501 ppnK inorganic polyph 92.1 0.88 1.9E-05 28.8 5.8 30 6-35 38-72 (264)
120 TIGR03568 NeuC_NnaA UDP-N-acet 92.0 1.2 2.5E-05 29.2 6.6 57 6-73 280-337 (365)
121 cd04955 GT1_like_6 This family 92.0 0.34 7.4E-06 30.4 3.9 48 18-75 283-330 (363)
122 PRK14075 pnk inorganic polypho 91.9 1.2 2.6E-05 28.0 6.3 29 6-34 40-69 (256)
123 PRK01185 ppnK inorganic polyph 91.8 1.1 2.3E-05 28.5 6.0 28 7-34 52-80 (271)
124 cd04950 GT1_like_1 Glycosyltra 91.7 0.89 1.9E-05 29.5 5.7 48 18-75 293-340 (373)
125 PRK03378 ppnK inorganic polyph 91.4 1.1 2.4E-05 28.8 5.8 28 7-34 63-94 (292)
126 PF09547 Spore_IV_A: Stage IV 91.1 2.6 5.5E-05 29.0 7.4 71 4-74 143-234 (492)
127 PRK14076 pnk inorganic polypho 90.9 1.3 2.8E-05 30.9 6.1 28 7-34 348-379 (569)
128 COG0381 WecB UDP-N-acetylgluco 90.6 0.99 2.1E-05 30.2 5.1 62 7-76 281-342 (383)
129 cd03802 GT1_AviGT4_like This f 90.2 1.3 2.8E-05 27.5 5.3 60 7-74 243-307 (335)
130 PLN02929 NADH kinase 90.1 1.4 3.1E-05 28.5 5.5 65 6-75 63-137 (301)
131 PHA01630 putative group 1 glyc 89.8 2.6 5.6E-05 27.3 6.5 29 7-35 209-241 (331)
132 PRK01231 ppnK inorganic polyph 89.7 2.2 4.7E-05 27.5 6.0 53 7-75 62-118 (295)
133 TIGR02095 glgA glycogen/starch 89.6 1.1 2.3E-05 30.1 4.8 63 6-74 364-436 (473)
134 PLN02935 Bifunctional NADH kin 89.6 1.9 4.1E-05 29.9 5.9 28 7-34 262-293 (508)
135 cd03791 GT1_Glycogen_synthase_ 89.3 0.59 1.3E-05 31.1 3.4 67 6-74 369-441 (476)
136 PF07429 Glyco_transf_56: 4-al 88.1 4 8.6E-05 27.2 6.4 64 7-74 265-332 (360)
137 TIGR02470 sucr_synth sucrose s 87.5 4.8 0.0001 29.5 7.1 60 8-73 644-707 (784)
138 PF06506 PrpR_N: Propionate ca 87.4 0.22 4.9E-06 29.3 0.5 33 4-37 31-63 (176)
139 PLN00142 sucrose synthase 87.3 2.8 6.1E-05 30.7 5.8 59 8-72 667-729 (815)
140 PRK02231 ppnK inorganic polyph 87.3 3.8 8.3E-05 26.1 5.9 28 7-34 42-73 (272)
141 cd03806 GT1_ALG11_like This fa 87.2 1.5 3.3E-05 29.1 4.3 52 18-76 339-393 (419)
142 TIGR02918 accessory Sec system 87.1 2.6 5.7E-05 28.9 5.5 65 7-74 392-466 (500)
143 PLN02727 NAD kinase 86.0 4.4 9.6E-05 30.3 6.3 28 7-34 743-774 (986)
144 TIGR02919 accessory Sec system 85.2 0.65 1.4E-05 31.4 1.8 61 8-76 350-412 (438)
145 KOG4180|consensus 85.1 0.62 1.3E-05 30.7 1.6 29 5-33 103-135 (395)
146 PRK00654 glgA glycogen synthas 84.8 2.3 5.1E-05 28.5 4.3 67 6-74 355-427 (466)
147 PF05159 Capsule_synth: Capsul 84.8 1.4 3E-05 27.4 3.1 28 6-34 198-225 (269)
148 PRK02797 4-alpha-L-fucosyltran 84.7 8.6 0.00019 25.3 6.6 54 16-73 239-292 (322)
149 COG0763 LpxB Lipid A disacchar 84.4 1.2 2.7E-05 29.7 2.7 70 6-76 263-345 (381)
150 COG3660 Predicted nucleoside-d 83.8 9.5 0.00021 24.8 6.8 70 5-74 242-327 (329)
151 PRK14098 glycogen synthase; Pr 83.6 2.7 5.9E-05 28.7 4.3 64 6-73 380-449 (489)
152 TIGR02400 trehalose_OtsA alpha 83.0 12 0.00027 25.5 7.3 62 6-76 354-423 (456)
153 PF11071 DUF2872: Protein of u 82.6 6.9 0.00015 22.5 5.0 29 5-33 70-106 (141)
154 KOG4626|consensus 82.2 1.5 3.2E-05 31.7 2.6 41 16-56 847-888 (966)
155 COG4370 Uncharacterized protei 81.5 2 4.3E-05 28.4 2.8 35 23-57 326-363 (412)
156 PRK06270 homoserine dehydrogen 80.5 6.3 0.00014 25.7 4.9 54 3-56 85-150 (341)
157 PRK10125 putative glycosyl tra 80.2 2.5 5.5E-05 28.0 3.1 47 7-58 306-356 (405)
158 cd03788 GT1_TPS Trehalose-6-Ph 79.8 4 8.6E-05 27.6 4.0 63 6-76 359-428 (460)
159 PRK04761 ppnK inorganic polyph 79.6 3.5 7.6E-05 25.9 3.4 30 5-34 23-56 (246)
160 TIGR00725 conserved hypothetic 76.9 12 0.00027 21.8 5.1 30 7-36 91-124 (159)
161 cd03793 GT1_Glycogen_synthase_ 76.9 23 0.00049 25.4 6.9 30 6-35 473-506 (590)
162 PRK15490 Vi polysaccharide bio 76.6 14 0.00031 26.2 5.9 48 6-57 471-522 (578)
163 COG1817 Uncharacterized protei 75.8 19 0.00042 23.9 6.0 26 7-33 252-277 (346)
164 PRK00561 ppnK inorganic polyph 75.4 16 0.00035 23.2 5.5 29 6-34 32-64 (259)
165 PRK15424 propionate catabolism 75.3 9.2 0.0002 26.8 4.7 32 5-37 62-93 (538)
166 TIGR02329 propionate_PrpR prop 74.8 21 0.00045 25.0 6.3 32 5-37 52-83 (526)
167 PRK02645 ppnK inorganic polyph 74.5 6 0.00013 25.5 3.5 29 7-35 57-89 (305)
168 PF06258 Mito_fiss_Elm1: Mitoc 73.8 14 0.00031 23.9 5.1 51 7-57 228-282 (311)
169 COG0438 RfaG Glycosyltransfera 73.4 17 0.00037 21.8 5.9 62 8-75 277-342 (381)
170 PLN02949 transferase, transfer 73.3 5.2 0.00011 27.2 3.2 65 7-75 354-422 (463)
171 TIGR00730 conserved hypothetic 72.8 11 0.00023 22.5 4.1 44 7-50 96-152 (178)
172 TIGR03646 YtoQ_fam YtoQ family 71.9 14 0.00031 21.3 4.2 29 5-33 73-109 (144)
173 COG3914 Spy Predicted O-linked 71.5 3 6.4E-05 29.6 1.7 33 6-40 507-542 (620)
174 TIGR00661 MJ1255 conserved hyp 71.1 5.1 0.00011 25.5 2.7 30 4-33 90-119 (321)
175 PRK12446 undecaprenyldiphospho 70.5 5.5 0.00012 26.0 2.7 31 3-33 87-120 (352)
176 PRK14099 glycogen synthase; Pr 69.2 14 0.0003 25.3 4.5 63 7-71 369-440 (485)
177 COG2230 Cfa Cyclopropane fatty 69.1 2.7 5.9E-05 27.0 1.1 45 8-52 74-121 (283)
178 COG2327 WcaK Polysaccharide py 68.9 33 0.00072 23.2 6.3 64 7-74 285-349 (385)
179 PF04464 Glyphos_transf: CDP-G 67.8 4.1 8.9E-05 26.4 1.7 64 6-74 268-335 (369)
180 TIGR02193 heptsyl_trn_I lipopo 67.5 21 0.00047 22.5 4.9 63 6-73 253-319 (319)
181 PF14350 Beta_protein: Beta pr 66.0 11 0.00023 24.6 3.4 46 29-74 99-147 (347)
182 PF01513 NAD_kinase: ATP-NAD k 64.1 11 0.00024 23.9 3.1 31 5-35 74-108 (285)
183 PRK13057 putative lipid kinase 63.6 14 0.00031 23.2 3.6 30 6-35 49-82 (287)
184 PRK13840 sucrose phosphorylase 63.6 13 0.00029 25.8 3.6 44 26-69 371-414 (495)
185 TIGR02836 spore_IV_A stage IV 63.3 49 0.0011 23.1 7.2 70 5-74 144-234 (492)
186 PF04558 tRNA_synt_1c_R1: Glut 63.1 12 0.00026 22.1 2.9 29 41-74 103-131 (164)
187 COG3199 Predicted inorganic po 62.2 37 0.0008 22.7 5.2 30 6-35 99-131 (355)
188 PF03641 Lysine_decarbox: Poss 61.9 26 0.00057 19.6 4.1 43 8-50 54-110 (133)
189 PF15024 Glyco_transf_18: Glyc 61.4 14 0.0003 26.2 3.3 70 7-76 341-431 (559)
190 TIGR00421 ubiX_pad polyprenyl 61.3 33 0.00071 20.5 5.1 34 23-56 108-145 (181)
191 PLN03063 alpha,alpha-trehalose 61.3 44 0.00095 24.7 5.9 61 6-74 374-442 (797)
192 COG2022 ThiG Uncharacterized e 60.7 13 0.00029 23.6 2.9 31 27-57 128-158 (262)
193 PRK11914 diacylglycerol kinase 59.9 15 0.00033 23.3 3.2 30 6-35 63-96 (306)
194 PLN02316 synthase/transferase 59.8 72 0.0016 24.6 6.8 69 5-75 917-998 (1036)
195 PRK14116 gpmA phosphoglyceromu 59.6 8.3 0.00018 23.6 1.9 23 7-29 175-197 (228)
196 KOG0853|consensus 58.8 4.7 0.0001 28.0 0.8 16 18-33 380-395 (495)
197 PRK13059 putative lipid kinase 58.6 15 0.00033 23.3 3.1 30 6-35 55-90 (295)
198 PF12689 Acid_PPase: Acid Phos 58.2 21 0.00046 21.2 3.4 47 26-72 120-166 (169)
199 TIGR02814 pfaD_fam PfaD family 58.0 60 0.0013 22.4 6.5 59 14-73 5-66 (444)
200 PRK08334 translation initiatio 57.2 35 0.00077 22.8 4.6 46 11-56 163-225 (356)
201 TIGR03848 MSMEG_4193 probable 57.1 15 0.00031 21.9 2.7 22 9-30 147-168 (204)
202 PF12000 Glyco_trans_4_3: Gkyc 56.9 14 0.00031 21.9 2.6 26 9-34 68-95 (171)
203 cd07037 TPP_PYR_MenD Pyrimidin 56.2 30 0.00065 20.2 3.8 28 7-34 60-93 (162)
204 PRK14119 gpmA phosphoglyceromu 56.2 11 0.00025 23.0 2.1 22 8-29 176-197 (228)
205 PRK13463 phosphatase PhoE; Pro 55.6 12 0.00026 22.3 2.2 23 8-30 145-167 (203)
206 CHL00162 thiG thiamin biosynth 55.4 18 0.00039 23.2 2.9 31 27-57 135-165 (267)
207 smart00046 DAGKc Diacylglycero 54.4 19 0.00041 19.8 2.7 29 7-35 49-86 (124)
208 PF05690 ThiG: Thiazole biosyn 54.3 28 0.0006 22.1 3.6 31 27-57 121-151 (247)
209 COG1560 HtrB Lauroyl/myristoyl 53.8 60 0.0013 21.2 6.0 41 12-52 107-148 (308)
210 PRK13054 lipid kinase; Reviewe 53.5 23 0.00051 22.5 3.3 30 6-35 55-92 (300)
211 TIGR03162 ribazole_cobC alpha- 53.5 13 0.00028 21.4 2.0 21 9-29 140-160 (177)
212 PF05693 Glycogen_syn: Glycoge 52.8 30 0.00065 25.0 3.9 56 16-73 483-541 (633)
213 PF06204 CBM_X: Putative carbo 52.7 6.1 0.00013 19.8 0.5 17 2-18 30-46 (66)
214 PRK14118 gpmA phosphoglyceromu 52.3 13 0.00029 22.7 2.0 23 8-30 175-197 (227)
215 TIGR00147 lipid kinase, YegS/R 52.1 25 0.00055 22.1 3.3 30 6-35 56-91 (293)
216 PRK14117 gpmA phosphoglyceromu 51.8 14 0.0003 22.7 2.0 22 8-29 176-197 (230)
217 cd07039 TPP_PYR_POX Pyrimidine 51.6 39 0.00084 19.6 3.8 28 7-34 63-96 (164)
218 PRK05920 aromatic acid decarbo 51.5 44 0.00096 20.5 4.1 33 22-54 125-161 (204)
219 TIGR02482 PFKA_ATP 6-phosphofr 51.2 36 0.00078 22.1 3.9 31 5-35 89-123 (301)
220 PRK15004 alpha-ribazole phosph 51.0 15 0.00031 21.8 2.0 23 8-30 143-165 (199)
221 PTZ00122 phosphoglycerate muta 50.4 20 0.00043 23.1 2.6 23 8-30 234-256 (299)
222 PLN02939 transferase, transfer 50.4 73 0.0016 24.4 5.6 66 6-73 855-929 (977)
223 PRK03482 phosphoglycerate muta 50.0 17 0.00037 21.8 2.2 22 9-30 145-166 (215)
224 COG0061 nadF NAD kinase [Coenz 48.8 69 0.0015 20.4 5.8 29 6-34 54-86 (281)
225 PRK03202 6-phosphofructokinase 48.6 37 0.00079 22.3 3.6 31 5-35 91-124 (320)
226 PF04230 PS_pyruv_trans: Polys 48.5 43 0.00094 19.9 3.8 30 7-36 63-108 (286)
227 TIGR03852 sucrose_gtfA sucrose 47.7 33 0.00073 23.8 3.4 45 26-70 361-405 (470)
228 KOG0257|consensus 47.6 83 0.0018 21.7 5.2 67 3-69 89-169 (420)
229 PF09989 DUF2229: CoA enzyme a 47.2 61 0.0013 20.0 4.3 36 36-72 11-46 (221)
230 PF05014 Nuc_deoxyrib_tr: Nucl 47.1 38 0.00083 18.1 3.1 21 15-35 74-97 (113)
231 cd04742 NPD_FabD 2-Nitropropan 46.6 94 0.002 21.3 6.4 57 16-73 2-61 (418)
232 PRK01112 phosphoglyceromutase; 46.1 19 0.00041 22.1 2.0 24 7-30 174-197 (228)
233 PRK13695 putative NTPase; Prov 46.0 58 0.0013 18.7 5.5 54 20-73 119-172 (174)
234 PRK13055 putative lipid kinase 45.8 37 0.0008 22.0 3.3 30 6-35 58-93 (334)
235 cd08549 G1PDH_related Glycerol 45.4 42 0.0009 21.8 3.5 30 7-37 80-114 (332)
236 cd07766 DHQ_Fe-ADH Dehydroquin 45.2 39 0.00084 21.7 3.4 30 6-36 77-113 (332)
237 TIGR02483 PFK_mixed phosphofru 45.0 51 0.0011 21.6 3.9 32 5-36 92-126 (324)
238 PHA02975 hypothetical protein; 45.0 22 0.00048 18.1 1.7 25 52-76 10-34 (69)
239 PRK00861 putative lipid kinase 45.0 46 0.001 21.1 3.7 30 6-35 56-89 (300)
240 PRK13337 putative lipid kinase 44.5 39 0.00085 21.5 3.3 30 6-35 56-91 (304)
241 PF02775 TPP_enzyme_C: Thiamin 44.3 57 0.0012 18.3 3.7 32 42-75 113-145 (153)
242 PTZ00123 phosphoglycerate muta 44.1 22 0.00047 21.9 2.0 21 9-29 164-184 (236)
243 PRK01295 phosphoglyceromutase; 44.0 21 0.00046 21.5 1.9 23 8-30 152-174 (206)
244 cd03789 GT1_LPS_heptosyltransf 43.7 45 0.00097 20.7 3.4 27 6-33 197-223 (279)
245 TIGR01258 pgm_1 phosphoglycera 42.7 22 0.00048 22.1 1.9 22 8-29 175-196 (245)
246 PRK13934 stationary phase surv 42.6 29 0.00062 22.3 2.4 24 12-35 103-127 (266)
247 PRK13932 stationary phase surv 41.9 39 0.00086 21.5 2.9 24 12-35 109-133 (257)
248 PF02481 DNA_processg_A: DNA r 41.9 65 0.0014 19.7 3.8 37 17-54 171-209 (212)
249 COG4273 Uncharacterized conser 41.8 23 0.00049 20.3 1.7 21 13-33 53-73 (135)
250 cd07035 TPP_PYR_POX_like Pyrim 41.6 65 0.0014 18.1 7.9 27 8-34 60-92 (155)
251 TIGR00087 surE 5'/3'-nucleotid 41.5 45 0.00097 21.0 3.1 25 11-35 103-128 (244)
252 COG1618 Predicted nucleotide k 41.4 81 0.0018 19.1 5.4 55 20-76 123-178 (179)
253 PF12575 DUF3753: Protein of u 41.4 26 0.00056 18.0 1.7 26 51-76 9-34 (72)
254 COG0313 Predicted methyltransf 40.7 33 0.00072 22.2 2.5 25 11-35 90-114 (275)
255 PF12965 DUF3854: Domain of un 40.6 56 0.0012 18.5 3.2 33 2-35 5-37 (130)
256 PF11238 DUF3039: Protein of u 40.1 49 0.0011 16.2 2.5 23 11-33 8-30 (58)
257 PRK10852 thiosulfate transport 40.0 93 0.002 20.5 4.5 43 6-50 56-100 (338)
258 COG2099 CobK Precorrin-6x redu 39.9 23 0.0005 22.6 1.7 30 4-33 193-228 (257)
259 cd07038 TPP_PYR_PDC_IPDC_like 39.8 68 0.0015 18.5 3.6 26 9-34 61-92 (162)
260 PRK08335 translation initiatio 39.8 1E+02 0.0022 19.8 5.4 48 8-56 110-166 (275)
261 TIGR00732 dprA DNA protecting 39.7 91 0.002 19.2 5.4 40 17-56 171-212 (220)
262 KOG3285|consensus 39.6 90 0.0019 19.1 4.5 63 7-73 6-68 (203)
263 PRK05096 guanosine 5'-monophos 39.6 1.2E+02 0.0025 20.4 5.3 49 23-72 42-91 (346)
264 PHA02819 hypothetical protein; 39.5 27 0.00059 17.8 1.6 25 52-76 10-34 (71)
265 PHA02650 hypothetical protein; 39.1 30 0.00065 18.1 1.7 25 52-76 10-34 (81)
266 PRK14115 gpmA phosphoglyceromu 38.5 31 0.00066 21.5 2.1 22 8-29 175-196 (247)
267 PRK13462 acid phosphatase; Pro 38.3 38 0.00082 20.3 2.4 22 8-29 141-162 (203)
268 cd08171 GlyDH-like2 Glycerol d 38.3 70 0.0015 20.9 3.8 31 5-36 76-111 (345)
269 PF01075 Glyco_transf_9: Glyco 38.2 65 0.0014 19.4 3.5 27 6-33 182-208 (247)
270 COG0406 phoE Broad specificity 38.0 36 0.00077 20.1 2.3 22 9-30 148-169 (208)
271 PF08800 VirE_N: VirE N-termin 37.9 78 0.0017 17.9 3.6 53 24-76 5-57 (136)
272 PF11248 DUF3046: Protein of u 37.8 17 0.00037 18.2 0.7 21 9-29 25-45 (63)
273 PRK13935 stationary phase surv 37.8 39 0.00085 21.5 2.4 24 12-35 104-128 (253)
274 PRK06112 acetolactate synthase 37.4 56 0.0012 22.8 3.4 28 7-34 74-107 (578)
275 PRK14120 gpmA phosphoglyceromu 37.3 30 0.00066 21.6 1.9 21 9-29 178-198 (249)
276 cd08177 MAR Maleylacetate redu 37.0 66 0.0014 20.9 3.5 31 6-37 76-111 (337)
277 PRK06555 pyrophosphate--fructo 36.6 40 0.00087 22.9 2.5 32 4-35 109-149 (403)
278 TIGR03739 PRTRC_D PRTRC system 36.2 92 0.002 20.1 4.0 41 10-51 277-319 (320)
279 COG4080 SpoU rRNA Methylase fa 36.2 46 0.00099 19.4 2.3 29 9-37 30-66 (147)
280 PRK00346 surE 5'(3')-nucleotid 35.5 48 0.001 21.0 2.6 24 12-35 100-124 (250)
281 cd08181 PPD-like 1,3-propanedi 35.4 68 0.0015 21.0 3.4 31 5-36 81-133 (357)
282 PRK11475 DNA-binding transcrip 35.2 1E+02 0.0023 18.6 6.6 49 26-75 67-115 (207)
283 PRK09423 gldA glycerol dehydro 35.0 82 0.0018 20.7 3.7 31 5-36 82-117 (366)
284 PRK12361 hypothetical protein; 34.9 61 0.0013 22.6 3.3 30 6-35 296-329 (547)
285 TIGR00486 YbgI_SA1388 dinuclea 34.9 1.2E+02 0.0025 19.0 4.6 47 9-57 169-216 (249)
286 PLN02496 probable phosphopanto 34.6 1.1E+02 0.0025 18.9 6.6 49 26-74 131-198 (209)
287 PTZ00314 inosine-5'-monophosph 34.6 87 0.0019 21.8 3.9 53 20-74 43-97 (495)
288 PRK07313 phosphopantothenoylcy 34.3 1E+02 0.0023 18.3 6.9 48 27-74 113-179 (182)
289 PRK07092 benzoylformate decarb 33.9 76 0.0016 21.9 3.5 27 7-33 73-105 (530)
290 PRK10586 putative oxidoreducta 33.4 86 0.0019 20.8 3.6 30 6-36 85-119 (362)
291 TIGR01305 GMP_reduct_1 guanosi 33.4 1.5E+02 0.0033 19.9 4.9 51 23-74 41-92 (343)
292 PF00781 DAGK_cat: Diacylglyce 33.2 66 0.0014 17.6 2.7 27 9-35 56-90 (130)
293 PHA02844 putative transmembran 33.0 41 0.00088 17.4 1.6 25 52-76 10-34 (75)
294 TIGR02113 coaC_strep phosphopa 33.0 1.1E+02 0.0024 18.2 6.2 30 26-55 111-147 (177)
295 PRK15481 transcriptional regul 32.8 1.5E+02 0.0033 19.7 5.6 13 9-21 143-155 (431)
296 PRK08527 acetolactate synthase 32.7 89 0.0019 21.8 3.7 27 7-33 66-98 (563)
297 PRK13931 stationary phase surv 32.6 58 0.0013 20.8 2.6 24 12-35 105-129 (261)
298 TIGR02638 lactal_redase lactal 32.5 79 0.0017 20.9 3.4 31 5-36 84-139 (379)
299 COG1541 PaaK Coenzyme F390 syn 32.4 53 0.0011 22.7 2.6 40 2-47 84-123 (438)
300 PLN02884 6-phosphofructokinase 32.4 78 0.0017 21.6 3.3 31 5-35 141-180 (411)
301 PF02776 TPP_enzyme_N: Thiamin 32.4 91 0.002 18.0 3.3 28 7-34 64-97 (172)
302 PRK00843 egsA NAD(P)-dependent 32.1 94 0.002 20.4 3.6 30 6-36 86-120 (350)
303 PRK14071 6-phosphofructokinase 31.9 1.6E+02 0.0034 19.7 4.7 33 14-46 187-220 (360)
304 PLN02775 Probable dihydrodipic 31.9 1.5E+02 0.0032 19.3 5.1 39 19-57 96-134 (286)
305 KOG3446|consensus 31.6 83 0.0018 16.9 2.7 47 27-75 49-96 (97)
306 TIGR02478 6PF1K_euk 6-phosphof 31.6 2.2E+02 0.0047 21.2 7.2 23 14-36 196-218 (745)
307 PF01372 Melittin: Melittin; 31.6 16 0.00035 14.7 0.1 16 16-31 1-16 (26)
308 PF00391 PEP-utilizers: PEP-ut 31.5 77 0.0017 16.0 2.6 29 6-34 29-60 (80)
309 cd01147 HemV-2 Metal binding p 31.0 1.3E+02 0.0027 18.3 4.3 29 7-35 74-106 (262)
310 PRK06882 acetolactate synthase 31.0 93 0.002 21.7 3.6 28 7-34 67-100 (574)
311 cd01451 vWA_Magnesium_chelatas 30.7 1.1E+02 0.0024 17.6 4.6 46 25-70 130-177 (178)
312 cd08170 GlyDH Glycerol dehydro 30.7 92 0.002 20.3 3.4 32 4-36 74-110 (351)
313 COG0371 GldA Glycerol dehydrog 30.3 1.2E+02 0.0026 20.4 3.9 31 6-36 83-117 (360)
314 PRK10964 ADP-heptose:LPS hepto 30.0 98 0.0021 19.7 3.4 64 6-74 252-321 (322)
315 PRK07064 hypothetical protein; 29.6 1.1E+02 0.0025 21.1 3.9 28 6-33 65-98 (544)
316 PRK06029 3-octaprenyl-4-hydrox 29.4 1.3E+02 0.0029 18.1 4.9 35 23-57 111-149 (185)
317 PRK13933 stationary phase surv 29.4 60 0.0013 20.6 2.3 23 13-35 106-129 (253)
318 cd08187 BDH Butanol dehydrogen 29.4 1E+02 0.0022 20.5 3.5 31 5-36 84-137 (382)
319 cd08174 G1PDH-like Glycerol-1- 29.3 1.1E+02 0.0023 19.9 3.5 29 7-36 75-108 (331)
320 PLN02470 acetolactate synthase 29.1 1.1E+02 0.0024 21.5 3.7 29 6-34 75-109 (585)
321 cd01141 TroA_d Periplasmic bin 29.1 1.2E+02 0.0026 17.4 4.3 28 8-35 70-100 (186)
322 PRK08322 acetolactate synthase 28.9 1.1E+02 0.0023 21.2 3.6 29 6-34 62-96 (547)
323 PRK10422 lipopolysaccharide co 28.7 1.1E+02 0.0024 19.7 3.6 27 6-33 261-287 (352)
324 TIGR00173 menD 2-succinyl-5-en 28.6 1.9E+02 0.0041 19.5 6.3 27 7-33 63-95 (432)
325 PRK08266 hypothetical protein; 28.4 1.2E+02 0.0027 21.0 3.8 27 7-33 68-100 (542)
326 KOG2670|consensus 28.1 2E+02 0.0043 19.6 6.0 55 17-71 278-336 (433)
327 PRK05772 translation initiatio 28.1 1.2E+02 0.0027 20.4 3.6 48 9-56 168-233 (363)
328 cd08191 HHD 6-hydroxyhexanoate 28.1 1.1E+02 0.0024 20.3 3.5 31 5-36 77-130 (386)
329 PRK14021 bifunctional shikimat 27.9 1.3E+02 0.0029 21.1 3.9 28 7-35 269-303 (542)
330 cd07067 HP_PGM_like Histidine 27.8 67 0.0015 17.7 2.2 23 7-29 100-122 (153)
331 PF06345 Drf_DAD: DRF Autoregu 27.7 42 0.0009 11.6 1.3 11 18-28 4-14 (15)
332 PRK07238 bifunctional RNase H/ 27.6 59 0.0013 21.4 2.2 23 8-30 314-336 (372)
333 PLN02859 glutamine-tRNA ligase 27.6 86 0.0019 23.4 3.1 26 45-75 109-134 (788)
334 cd08180 PDD 1,3-propanediol de 27.5 1.2E+02 0.0025 19.7 3.5 31 5-36 76-118 (332)
335 PHA02692 hypothetical protein; 27.5 54 0.0012 16.7 1.5 25 52-76 10-34 (70)
336 PHA03054 IMV membrane protein; 27.4 54 0.0012 16.8 1.5 25 52-76 10-34 (72)
337 PRK08978 acetolactate synthase 27.4 1.3E+02 0.0027 21.0 3.8 28 7-34 63-96 (548)
338 cd00363 PFK Phosphofructokinas 27.2 1.4E+02 0.003 19.7 3.7 31 5-35 90-129 (338)
339 PF10686 DUF2493: Protein of u 27.0 70 0.0015 16.1 1.9 27 9-35 33-65 (71)
340 TIGR02201 heptsyl_trn_III lipo 27.0 1.2E+02 0.0027 19.4 3.5 27 6-33 259-285 (344)
341 cd08193 HVD 5-hydroxyvalerate 27.0 1.2E+02 0.0026 20.0 3.5 31 5-36 81-134 (376)
342 PF08599 Nbs1_C: DNA damage re 26.9 18 0.00038 18.1 -0.3 19 6-24 23-41 (65)
343 PHA01632 hypothetical protein 26.9 81 0.0018 15.4 2.0 18 58-75 26-43 (64)
344 PF02441 Flavoprotein: Flavopr 26.8 75 0.0016 17.5 2.2 18 20-37 103-120 (129)
345 cd08172 GlyDH-like1 Glycerol d 26.7 1.4E+02 0.0031 19.5 3.8 31 5-36 74-109 (347)
346 PF00365 PFK: Phosphofructokin 26.7 1E+02 0.0022 19.8 3.0 24 13-36 171-194 (282)
347 PF00282 Pyridoxal_deC: Pyrido 26.5 2E+02 0.0043 19.1 6.9 68 7-75 103-191 (373)
348 cd08176 LPO Lactadehyde:propan 26.5 1.3E+02 0.0028 19.9 3.6 30 6-36 84-136 (377)
349 PF09884 DUF2111: Uncharacteri 26.5 31 0.00067 18.2 0.6 16 22-37 53-68 (84)
350 PF01975 SurE: Survival protei 26.4 43 0.00093 20.3 1.3 18 18-35 116-133 (196)
351 TIGR02195 heptsyl_trn_II lipop 26.4 1.2E+02 0.0027 19.3 3.4 27 6-33 250-276 (334)
352 PRK07710 acetolactate synthase 26.3 1.2E+02 0.0027 21.2 3.6 29 6-34 77-111 (571)
353 COG0282 ackA Acetate kinase [E 26.2 37 0.0008 23.1 1.0 28 3-30 193-222 (396)
354 cd08550 GlyDH-like Glycerol_de 26.1 1.4E+02 0.0031 19.5 3.7 31 5-36 75-110 (349)
355 PRK06456 acetolactate synthase 26.1 1.4E+02 0.003 20.9 3.8 28 7-34 68-101 (572)
356 TIGR03702 lip_kinase_YegS lipi 25.8 1.2E+02 0.0025 19.3 3.2 30 6-35 51-88 (293)
357 PRK10799 metal-binding protein 25.8 1.7E+02 0.0038 18.2 4.8 46 9-56 167-213 (247)
358 COG0311 PDX2 Predicted glutami 25.7 1.4E+02 0.0031 18.3 3.3 29 5-33 36-78 (194)
359 TIGR02518 EutH_ACDH acetaldehy 25.5 1.1E+02 0.0024 21.2 3.2 32 2-33 182-213 (488)
360 TIGR03845 sulfopyru_alph sulfo 25.3 1.5E+02 0.0032 17.2 3.4 27 8-34 60-91 (157)
361 CHL00099 ilvB acetohydroxyacid 25.3 1.2E+02 0.0026 21.4 3.4 28 7-34 76-109 (585)
362 cd08175 G1PDH Glycerol-1-phosp 25.0 1.5E+02 0.0032 19.3 3.6 29 7-36 80-113 (348)
363 PRK06457 pyruvate dehydrogenas 24.9 1.4E+02 0.0031 20.7 3.7 27 7-33 64-96 (549)
364 PRK08199 thiamine pyrophosphat 24.8 1.5E+02 0.0031 20.7 3.7 28 6-33 70-103 (557)
365 PRK08155 acetolactate synthase 24.7 1.6E+02 0.0034 20.6 3.8 28 7-34 76-109 (564)
366 PRK05858 hypothetical protein; 24.7 1.6E+02 0.0034 20.5 3.8 28 7-34 67-100 (542)
367 COG0133 TrpB Tryptophan syntha 24.7 2.3E+02 0.0051 19.2 5.0 57 19-75 119-180 (396)
368 PF07128 DUF1380: Protein of u 24.6 35 0.00077 19.8 0.6 68 7-74 63-138 (139)
369 PRK06553 lipid A biosynthesis 24.6 2E+02 0.0043 18.4 5.9 23 15-37 120-143 (308)
370 PF07755 DUF1611: Protein of u 24.5 32 0.0007 22.4 0.5 61 12-72 197-281 (301)
371 cd08194 Fe-ADH6 Iron-containin 24.5 1.5E+02 0.0032 19.6 3.5 31 5-36 78-131 (375)
372 TIGR03393 indolpyr_decarb indo 24.4 98 0.0021 21.5 2.8 26 9-34 65-96 (539)
373 PRK07979 acetolactate synthase 24.4 1.4E+02 0.0029 21.0 3.5 27 7-33 67-99 (574)
374 KOG1465|consensus 24.3 1.1E+02 0.0024 20.4 2.9 25 11-35 247-273 (353)
375 PRK10916 ADP-heptose:LPS hepto 24.3 1.4E+02 0.0031 19.2 3.4 27 6-33 260-286 (348)
376 PRK06048 acetolactate synthase 24.3 1.6E+02 0.0034 20.6 3.8 27 7-33 70-102 (561)
377 PRK06349 homoserine dehydrogen 24.2 89 0.0019 21.2 2.5 55 2-56 67-129 (426)
378 PF14943 MRP-S26: Mitochondria 24.0 1E+02 0.0023 18.4 2.5 19 58-76 138-156 (170)
379 PRK08535 translation initiatio 24.0 2.1E+02 0.0046 18.6 5.3 48 8-56 121-177 (310)
380 PF04909 Amidohydro_2: Amidohy 23.8 68 0.0015 19.3 1.8 55 4-58 161-231 (273)
381 cd08169 DHQ-like Dehydroquinat 23.8 1.7E+02 0.0037 19.2 3.7 30 6-36 82-118 (344)
382 PRK11269 glyoxylate carboligas 23.7 1.6E+02 0.0034 20.8 3.8 28 7-34 68-101 (591)
383 PRK07282 acetolactate synthase 23.5 1.6E+02 0.0036 20.6 3.8 28 7-34 73-106 (566)
384 cd08173 Gro1PDH Sn-glycerol-1- 23.5 1.7E+02 0.0036 19.0 3.6 31 5-36 76-111 (339)
385 TIGR02720 pyruv_oxi_spxB pyruv 23.5 1.7E+02 0.0036 20.6 3.8 28 7-34 63-96 (575)
386 PRK06276 acetolactate synthase 23.4 1.7E+02 0.0036 20.6 3.8 28 7-34 63-96 (586)
387 COG5155 ESP1 Separase, a prote 23.4 1.9E+02 0.0041 22.9 4.1 53 17-70 1538-1595(1622)
388 TIGR00512 salvage_mtnA S-methy 23.2 2.4E+02 0.0051 18.8 4.9 47 10-56 149-212 (331)
389 TIGR00096 probable S-adenosylm 23.2 87 0.0019 20.1 2.2 24 11-34 85-108 (276)
390 PRK06466 acetolactate synthase 23.1 1.6E+02 0.0035 20.6 3.7 28 7-34 67-100 (574)
391 PRK10624 L-1,2-propanediol oxi 23.0 1.5E+02 0.0032 19.7 3.4 31 5-36 85-140 (382)
392 COG0673 MviM Predicted dehydro 23.0 2.1E+02 0.0045 18.1 6.0 55 2-56 62-124 (342)
393 TIGR00118 acolac_lg acetolacta 23.0 1.8E+02 0.0038 20.3 3.8 27 7-33 64-96 (558)
394 PRK09259 putative oxalyl-CoA d 23.0 1.7E+02 0.0037 20.5 3.8 28 7-34 72-105 (569)
395 COG0826 Collagenase and relate 22.9 2.2E+02 0.0048 19.0 4.1 45 28-72 114-159 (347)
396 PRK07525 sulfoacetaldehyde ace 22.9 1.6E+02 0.0035 20.7 3.7 28 7-34 68-101 (588)
397 COG0496 SurE Predicted acid ph 22.8 2.2E+02 0.0047 18.3 4.1 19 18-36 108-126 (252)
398 PRK06371 translation initiatio 22.8 2.4E+02 0.0052 18.8 5.3 49 8-56 137-202 (329)
399 COG3150 Predicted esterase [Ge 22.7 1.1E+02 0.0024 18.7 2.4 36 11-46 65-101 (191)
400 PRK08611 pyruvate oxidase; Pro 22.6 1.7E+02 0.0036 20.6 3.7 27 7-33 68-100 (576)
401 PRK06725 acetolactate synthase 22.6 1.7E+02 0.0036 20.6 3.7 27 7-33 77-109 (570)
402 PRK08617 acetolactate synthase 22.5 1.8E+02 0.0038 20.3 3.8 29 6-34 66-100 (552)
403 PRK07449 2-succinyl-5-enolpyru 22.5 1.6E+02 0.0034 20.6 3.5 28 7-34 72-105 (568)
404 PRK09107 acetolactate synthase 22.4 1.8E+02 0.0038 20.7 3.8 28 7-34 74-107 (595)
405 PRK07418 acetolactate synthase 22.1 1.8E+02 0.004 20.6 3.8 27 7-33 85-117 (616)
406 PRK07524 hypothetical protein; 22.0 1.9E+02 0.0042 20.0 3.9 27 7-33 64-96 (535)
407 TIGR02418 acolac_catab acetola 22.0 1.8E+02 0.0039 20.2 3.7 28 7-34 61-94 (539)
408 TIGR00715 precor6x_red precorr 22.0 2.2E+02 0.0048 18.0 6.3 40 19-58 163-205 (256)
409 PRK08979 acetolactate synthase 22.0 1.7E+02 0.0036 20.6 3.6 28 7-34 67-100 (572)
410 PRK05720 mtnA methylthioribose 21.9 2.5E+02 0.0055 18.7 5.1 49 8-56 147-212 (344)
411 PRK07586 hypothetical protein; 21.9 1.7E+02 0.0038 20.1 3.6 28 7-34 64-97 (514)
412 COG3195 Uncharacterized protei 21.7 2E+02 0.0043 17.4 4.3 34 41-74 112-145 (176)
413 COG0299 PurN Folate-dependent 21.6 2.1E+02 0.0046 17.7 5.3 66 10-75 5-77 (200)
414 cd08183 Fe-ADH2 Iron-containin 21.6 1.7E+02 0.0038 19.3 3.5 13 5-17 73-85 (374)
415 PLN00011 cysteine synthase 21.4 2.4E+02 0.0053 18.2 8.6 53 6-59 67-124 (323)
416 PRK06843 inosine 5-monophospha 21.3 2.8E+02 0.0061 19.0 6.0 53 20-74 35-89 (404)
417 COG0614 FepB ABC-type Fe3+-hyd 21.2 2.2E+02 0.0048 17.7 4.9 29 8-36 116-146 (319)
418 TIGR03254 oxalate_oxc oxalyl-C 20.9 2E+02 0.0043 20.1 3.8 28 7-34 65-98 (554)
419 PRK11864 2-ketoisovalerate fer 20.8 2.6E+02 0.0056 18.3 5.6 63 13-75 105-196 (300)
420 TIGR03457 sulphoacet_xsc sulfo 20.7 1.9E+02 0.0041 20.4 3.6 29 6-34 63-97 (579)
421 TIGR02699 archaeo_AfpA archaeo 20.7 1.1E+02 0.0024 18.2 2.3 15 22-36 110-124 (174)
422 PRK05579 bifunctional phosphop 20.7 2.9E+02 0.0062 18.8 6.2 50 24-73 113-181 (399)
423 COG0205 PfkA 6-phosphofructoki 20.7 1.2E+02 0.0025 20.3 2.5 24 13-36 173-196 (347)
424 PRK06965 acetolactate synthase 20.6 1.9E+02 0.0042 20.4 3.7 28 7-34 84-117 (587)
425 PF00867 XPG_I: XPG I-region; 20.5 1.5E+02 0.0032 15.4 2.9 25 25-51 2-26 (94)
426 PF10649 DUF2478: Protein of u 20.5 1E+02 0.0022 18.2 2.0 16 18-33 114-129 (159)
427 PRK07789 acetolactate synthase 20.5 1.9E+02 0.0042 20.5 3.7 28 7-34 94-127 (612)
428 PRK14046 malate--CoA ligase su 20.4 2.9E+02 0.0062 18.7 6.2 53 2-55 305-370 (392)
429 TIGR01761 thiaz-red thiazoliny 20.3 2.7E+02 0.006 18.5 5.6 55 3-57 60-122 (343)
430 PF07631 PSD4: Protein of unkn 20.1 1.3E+02 0.0027 17.0 2.3 17 61-77 34-50 (128)
No 1
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.91 E-value=5.5e-25 Score=144.72 Aligned_cols=76 Identities=47% Similarity=0.777 Sum_probs=67.5
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
++|+||++++||||||+||+.|++++|+|+|++|.++||..||.++++.|+|+.++.++++.+++.++++++++|+
T Consensus 335 ~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 335 DLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp HHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred hhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999876
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.90 E-value=1.2e-23 Score=139.63 Aligned_cols=76 Identities=34% Similarity=0.503 Sum_probs=72.9
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
++|+||++++||||||.||+.|++.+|+|+|++|.+.||..||++++++|+|+.++..+++.+++.++++++++|+
T Consensus 358 ~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~ 433 (507)
T PHA03392 358 AVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENP 433 (507)
T ss_pred HHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCH
Confidence 3689999999999999999999999999999999999999999999999999999998999999999999999875
No 3
>PLN02208 glycosyltransferase family protein
Probab=99.89 E-value=4.2e-23 Score=135.24 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=70.0
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHH-hCceeeeCCCC---CCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHET---ITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~-~g~g~~~~~~~---~~~~~l~~~i~~~l~~~ 76 (77)
+||+||++.+|||||||||++|++++|+|+|++|++.||..|++++.+ +|+|+.++.++ ++++++.++++++++++
T Consensus 323 ~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~ 402 (442)
T PLN02208 323 LILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKD 402 (442)
T ss_pred HHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999998765 89999997644 89999999999999764
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=99.88 E-value=6e-23 Score=135.34 Aligned_cols=76 Identities=25% Similarity=0.420 Sum_probs=70.5
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCC----CCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHE----TITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~----~~~~~~l~~~i~~~l~~~ 76 (77)
+||+|+++.+|||||||||++|++++|+|+|++|++.||..|+++++++|+|+.+... .++.+++.++++++|.++
T Consensus 351 ~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 351 KILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDD 430 (472)
T ss_pred HHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCc
Confidence 4789999999999999999999999999999999999999999999999999998653 378999999999999764
No 5
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.88 E-value=2.2e-22 Score=132.11 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=69.6
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHh-CceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~-g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
++|.|+++++||||||+||++|++++|+|+|++|++.||..||+++++. |+|+.+. +.++++++.+++++++.++
T Consensus 336 ~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 336 EVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred HHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHHHcCC
Confidence 3789999999999999999999999999999999999999999999755 9999997 5789999999999999765
No 6
>PLN02210 UDP-glucosyl transferase
Probab=99.87 E-value=3e-22 Score=131.63 Aligned_cols=76 Identities=29% Similarity=0.485 Sum_probs=69.8
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHH-hCceeeeCCC----CCCHHHHHHHHHHHHcC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHE----TITGDILYITIREVLNN 75 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~-~g~g~~~~~~----~~~~~~l~~~i~~~l~~ 75 (77)
++|.|++.++||||||+||++|++++|+|+|++|++.||..|++++++ +|+|+.+..+ .++++++.+++++++.+
T Consensus 336 ~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~ 415 (456)
T PLN02210 336 KILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEG 415 (456)
T ss_pred HHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcC
Confidence 378999999999999999999999999999999999999999999987 8999998642 47899999999999976
Q ss_pred C
Q psy14950 76 P 76 (77)
Q Consensus 76 ~ 76 (77)
+
T Consensus 416 ~ 416 (456)
T PLN02210 416 P 416 (456)
T ss_pred c
Confidence 5
No 7
>PLN02555 limonoid glucosyltransferase
Probab=99.87 E-value=5.3e-22 Score=131.10 Aligned_cols=75 Identities=28% Similarity=0.381 Sum_probs=68.6
Q ss_pred CCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHh-CceeeeC-----CCCCCHHHHHHHHHHHHcC
Q psy14950 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITP-----HETITGDILYITIREVLNN 75 (77)
Q Consensus 2 ~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~-g~g~~~~-----~~~~~~~~l~~~i~~~l~~ 75 (77)
+|+||++++||||||+||+.|++.+|+|+|++|++.||..|++++++. |+|+.+. ...++++++.+++++++.+
T Consensus 350 iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~ 429 (480)
T PLN02555 350 VLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVG 429 (480)
T ss_pred HhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcC
Confidence 789999999999999999999999999999999999999999999765 9999994 2357899999999999965
Q ss_pred C
Q psy14950 76 P 76 (77)
Q Consensus 76 ~ 76 (77)
+
T Consensus 430 ~ 430 (480)
T PLN02555 430 E 430 (480)
T ss_pred c
Confidence 4
No 8
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.87 E-value=2.7e-22 Score=132.47 Aligned_cols=74 Identities=27% Similarity=0.428 Sum_probs=67.4
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHH-HHHHhCceeeeCC-----------CCCCHHHHHHH
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCK-LMEEKGMGLITPH-----------ETITGDILYIT 68 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~-~~~~~g~g~~~~~-----------~~~~~~~l~~~ 68 (77)
+||+||++++||||||+||++|++++|+|+|++|++.||..|++ .++++|+|+.+.. ..++.+++.++
T Consensus 354 ~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~a 433 (481)
T PLN02554 354 AVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERG 433 (481)
T ss_pred HHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHH
Confidence 37899999999999999999999999999999999999999995 4688999999853 35789999999
Q ss_pred HHHHHc
Q psy14950 69 IREVLN 74 (77)
Q Consensus 69 i~~~l~ 74 (77)
|+++|.
T Consensus 434 v~~vm~ 439 (481)
T PLN02554 434 IRCLME 439 (481)
T ss_pred HHHHhc
Confidence 999996
No 9
>PLN00414 glycosyltransferase family protein
Probab=99.86 E-value=8.1e-22 Score=129.36 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=69.5
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHH-HhCceeeeCCC---CCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLITPHE---TITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~-~~g~g~~~~~~---~~~~~~l~~~i~~~l~~~ 76 (77)
+||.|+++++|||||||||++|++++|+|++++|++.||..|++++. ++|+|+.+..+ .+++++++++++++|.++
T Consensus 324 ~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 324 LILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKD 403 (446)
T ss_pred HHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 37899999999999999999999999999999999999999999995 68999999643 378999999999999753
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.86 E-value=1.1e-21 Score=129.69 Aligned_cols=76 Identities=28% Similarity=0.465 Sum_probs=70.2
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHH-HHhCceeeeCCC--CCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMGLITPHE--TITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~-~~~g~g~~~~~~--~~~~~~l~~~i~~~l~~~ 76 (77)
++|+|+++.+||||||+||+.|++.+|+|+|++|++.||..|++++ +++|+|+.++.. .++.+++.+++++++.++
T Consensus 350 ~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 350 EILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred HHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC
Confidence 3789999999999999999999999999999999999999999999 589999999763 488999999999999764
No 11
>PLN02764 glycosyltransferase family protein
Probab=99.86 E-value=1e-21 Score=129.02 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=69.1
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHH-HhCceeeeCCC---CCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLITPHE---TITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~-~~g~g~~~~~~---~~~~~~l~~~i~~~l~~~ 76 (77)
+||+|+++++||||||+||++|++++|+|+|++|++.||..|+++++ .+|+|+.+..+ .+++++++++++++++++
T Consensus 329 ~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 329 LILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred HHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 47999999999999999999999999999999999999999999995 58999987543 478999999999999763
No 12
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.86 E-value=7.6e-22 Score=129.55 Aligned_cols=76 Identities=29% Similarity=0.489 Sum_probs=68.5
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHh-CceeeeCCCC----CCHHHHHHHHHHHHcC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITPHET----ITGDILYITIREVLNN 75 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~-g~g~~~~~~~----~~~~~l~~~i~~~l~~ 75 (77)
+||+|+++.+|||||||||++|++.+|+|+|++|++.||..|++++++. |+|+.+..++ ++.+++.++++++|.+
T Consensus 329 ~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~ 408 (449)
T PLN02173 329 QVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEG 408 (449)
T ss_pred HHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcC
Confidence 3789999999999999999999999999999999999999999999754 9998886432 5899999999999976
Q ss_pred C
Q psy14950 76 P 76 (77)
Q Consensus 76 ~ 76 (77)
+
T Consensus 409 ~ 409 (449)
T PLN02173 409 E 409 (449)
T ss_pred C
Confidence 5
No 13
>PLN03004 UDP-glycosyltransferase
Probab=99.86 E-value=6e-22 Score=130.09 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=69.7
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHH-HhCceeeeCCC---CCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLITPHE---TITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~-~~g~g~~~~~~---~~~~~~l~~~i~~~l~~~ 76 (77)
+||+|+++.+||||||+||++|++++|||+|++|++.||..|+++++ ++|+|+.++.+ .++++++.+++++++.++
T Consensus 346 ~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~ 425 (451)
T PLN03004 346 PVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC 425 (451)
T ss_pred HHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH
Confidence 47999999999999999999999999999999999999999999997 57999999753 468999999999999764
No 14
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.86 E-value=6.9e-22 Score=130.41 Aligned_cols=75 Identities=21% Similarity=0.433 Sum_probs=67.9
Q ss_pred CCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHH-HHHhCceeeeCCC-------CCCHHHHHHHHHHHH
Q psy14950 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKL-MEEKGMGLITPHE-------TITGDILYITIREVL 73 (77)
Q Consensus 2 ~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~-~~~~g~g~~~~~~-------~~~~~~l~~~i~~~l 73 (77)
+|+|+++++|||||||||++|++++|+|+|++|++.||..|+++ ++++|+|+.+... .++++++.++++++|
T Consensus 353 iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m 432 (475)
T PLN02167 353 ILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLM 432 (475)
T ss_pred HhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999987 5788999988642 468999999999999
Q ss_pred cCC
Q psy14950 74 NNP 76 (77)
Q Consensus 74 ~~~ 76 (77)
.++
T Consensus 433 ~~~ 435 (475)
T PLN02167 433 DGE 435 (475)
T ss_pred cCC
Confidence 653
No 15
>PLN00164 glucosyltransferase; Provisional
Probab=99.86 E-value=1.2e-21 Score=129.44 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=68.1
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHH-HhCceeeeCCC-----CCCHHHHHHHHHHHHc
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLITPHE-----TITGDILYITIREVLN 74 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~-~~g~g~~~~~~-----~~~~~~l~~~i~~~l~ 74 (77)
+||+|+++.+|||||||||++|++++|+|+|++|++.||..|++++. ++|+|+.+..+ ..+++++.++|+++|.
T Consensus 351 ~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~ 430 (480)
T PLN00164 351 EILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMG 430 (480)
T ss_pred HHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999999999999999884 68999998532 2689999999999997
Q ss_pred CC
Q psy14950 75 NP 76 (77)
Q Consensus 75 ~~ 76 (77)
++
T Consensus 431 ~~ 432 (480)
T PLN00164 431 GG 432 (480)
T ss_pred CC
Confidence 63
No 16
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.85 E-value=2.8e-21 Score=127.08 Aligned_cols=76 Identities=28% Similarity=0.382 Sum_probs=68.4
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHH-hCceeeeCC-----CCCCHHHHHHHHHHHHc
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPH-----ETITGDILYITIREVLN 74 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~-~g~g~~~~~-----~~~~~~~l~~~i~~~l~ 74 (77)
+||.|+++++||||||+||++|++++|+|++++|++.||..|++++++ +|+|+.+.. ...++++++++++++|.
T Consensus 335 ~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 335 KVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD 414 (459)
T ss_pred HHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999999999999999986 688888753 24689999999999997
Q ss_pred CC
Q psy14950 75 NP 76 (77)
Q Consensus 75 ~~ 76 (77)
++
T Consensus 415 ~~ 416 (459)
T PLN02448 415 LE 416 (459)
T ss_pred CC
Confidence 53
No 17
>PLN02207 UDP-glycosyltransferase
Probab=99.85 E-value=2.5e-21 Score=127.65 Aligned_cols=74 Identities=26% Similarity=0.429 Sum_probs=66.6
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHH-hCceeeeCC------C-CCCHHHHHHHHHHH
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPH------E-TITGDILYITIREV 72 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~-~g~g~~~~~------~-~~~~~~l~~~i~~~ 72 (77)
++|+|+++++|||||||||++|++++|+|+|++|++.||..|++++++ +|+|+.+.. + ..+.+++.++|+++
T Consensus 344 ~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~v 423 (468)
T PLN02207 344 EILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCV 423 (468)
T ss_pred HHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999865 899997631 1 34889999999999
Q ss_pred Hc
Q psy14950 73 LN 74 (77)
Q Consensus 73 l~ 74 (77)
|.
T Consensus 424 m~ 425 (468)
T PLN02207 424 MN 425 (468)
T ss_pred Hh
Confidence 96
No 18
>PLN02562 UDP-glycosyltransferase
Probab=99.85 E-value=1.8e-21 Score=127.76 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=67.8
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHH-hCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~-~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
++|.|+++.+||||||+||++|++++|+|+|++|++.||..|++++++ +|+|+.+. +++++++.+++++++.++
T Consensus 340 ~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~ 414 (448)
T PLN02562 340 EVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDS 414 (448)
T ss_pred HHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCH
Confidence 378999999999999999999999999999999999999999999976 58888874 578999999999999764
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.84 E-value=5.6e-21 Score=125.64 Aligned_cols=76 Identities=34% Similarity=0.471 Sum_probs=66.9
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHH-hCceeeeCC--C-CCCHHHHHHHHHHHHcCC
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE-KGMGLITPH--E-TITGDILYITIREVLNNP 76 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~-~g~g~~~~~--~-~~~~~~l~~~i~~~l~~~ 76 (77)
+||+|+++.+||||||+||++|++.+|+|++++|++.||..|++++++ +|+|+.+.. + ..+++++.++++++|.++
T Consensus 339 ~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 339 EVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK 418 (455)
T ss_pred HHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh
Confidence 378999999999999999999999999999999999999999999976 477766642 2 358999999999999754
No 20
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.83 E-value=1.5e-20 Score=124.27 Aligned_cols=76 Identities=28% Similarity=0.354 Sum_probs=65.6
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHH-HhCceeee--------CCCCCCHHHHHHHHHH
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLIT--------PHETITGDILYITIRE 71 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~-~~g~g~~~--------~~~~~~~~~l~~~i~~ 71 (77)
+||.|+++.+||||||+||++|++++|+|+|++|++.||..|+++++ .+++|+.+ +...++++++.+++++
T Consensus 357 ~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~ 436 (482)
T PLN03007 357 LILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVRE 436 (482)
T ss_pred HHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999885 33555443 2345789999999999
Q ss_pred HHcCC
Q psy14950 72 VLNNP 76 (77)
Q Consensus 72 ~l~~~ 76 (77)
++.++
T Consensus 437 ~m~~~ 441 (482)
T PLN03007 437 VIVGE 441 (482)
T ss_pred HhcCc
Confidence 99775
No 21
>PLN03015 UDP-glucosyl transferase
Probab=99.82 E-value=3.5e-20 Score=122.20 Aligned_cols=74 Identities=28% Similarity=0.474 Sum_probs=68.0
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHH-HHhCceeeeCC----CCCCHHHHHHHHHHHHc
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMGLITPH----ETITGDILYITIREVLN 74 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~-~~~g~g~~~~~----~~~~~~~l~~~i~~~l~ 74 (77)
++|+|+++.+|||||||||++|++++|+|++++|++.||..|++++ +.+|+|+.+.. ..++++++.++|+++|.
T Consensus 347 ~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 347 EILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred HHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999999999999999999 68899999952 24789999999999995
No 22
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.82 E-value=3.5e-20 Score=120.50 Aligned_cols=73 Identities=36% Similarity=0.557 Sum_probs=70.0
Q ss_pred CCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 4 ~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+++|+||||||.||++|++++|+|++++|...||..||.++++.|+|+.+..+.++.+.++++|+++|.|+
T Consensus 297 ~l~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 297 LLPRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred HhhhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCH
Confidence 4589999999999999999999999999999999999999999999999999998999999999999999875
No 23
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.82 E-value=4.4e-20 Score=122.00 Aligned_cols=74 Identities=27% Similarity=0.333 Sum_probs=65.8
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHH-HhCceeeeCCC---CCCHHHHHHHHHHHHc
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLITPHE---TITGDILYITIREVLN 74 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~-~~g~g~~~~~~---~~~~~~l~~~i~~~l~ 74 (77)
++|.|+++++|||||||||++|++++|+|+|++|++.||..|++++. ++|+|+.+... ..+.+++.+++++++.
T Consensus 355 ~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 355 AILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS 432 (477)
T ss_pred HHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh
Confidence 37899999999999999999999999999999999999999999975 67999998532 3578999999998873
No 24
>KOG1192|consensus
Probab=99.81 E-value=6.4e-20 Score=120.48 Aligned_cols=74 Identities=35% Similarity=0.617 Sum_probs=65.3
Q ss_pred CCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 3 TGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 3 l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
|.|++.++||||||+||++|++++|+|++++|+++||..|++++++.|.+.++...+.+...+.+++.+++.++
T Consensus 350 l~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~ 423 (496)
T KOG1192|consen 350 LDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENE 423 (496)
T ss_pred cCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcCh
Confidence 68999999999999999999999999999999999999999999999888887776666555777777777654
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.79 E-value=2.3e-19 Score=115.28 Aligned_cols=71 Identities=27% Similarity=0.435 Sum_probs=66.7
Q ss_pred CCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
.+.||++|||||+||++|++.+|+|+|++|...||..|++++++.|+|+.+...+++.+++.+++++++++
T Consensus 302 l~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 302 LPRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred hhhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 46699999999999999999999999999999999999999999999999988778899999999998865
No 26
>PLN02534 UDP-glycosyltransferase
Probab=99.78 E-value=8.7e-19 Score=116.21 Aligned_cols=74 Identities=26% Similarity=0.421 Sum_probs=66.2
Q ss_pred CCCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHH-HhCceeeeCC---------C----CCCHHHHH
Q psy14950 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLITPH---------E----TITGDILY 66 (77)
Q Consensus 1 ~~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~-~~g~g~~~~~---------~----~~~~~~l~ 66 (77)
++|.|+++.+||||||+||++|++++|+|+|++|.+.||..|+++++ .+|+|+.+.. + ..+++++.
T Consensus 356 ~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~ 435 (491)
T PLN02534 356 LILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVE 435 (491)
T ss_pred HHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHH
Confidence 37899999999999999999999999999999999999999999985 7799987741 0 26899999
Q ss_pred HHHHHHHc
Q psy14950 67 ITIREVLN 74 (77)
Q Consensus 67 ~~i~~~l~ 74 (77)
++++++|.
T Consensus 436 ~~v~~~m~ 443 (491)
T PLN02534 436 KAVKTLMD 443 (491)
T ss_pred HHHHHHhc
Confidence 99999996
No 27
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.75 E-value=4.3e-18 Score=109.48 Aligned_cols=71 Identities=38% Similarity=0.680 Sum_probs=67.4
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
+.+|++|+|||+||+.|++.+|+|+|++|...||..|++++++.|+|+.+...+++.+++.+++++++.|+
T Consensus 290 ~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~ 360 (392)
T TIGR01426 290 KKADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDP 360 (392)
T ss_pred hhCCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCH
Confidence 57899999999999999999999999999999999999999999999999888889999999999999875
No 28
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.71 E-value=6.1e-18 Score=98.31 Aligned_cols=71 Identities=27% Similarity=0.452 Sum_probs=58.9
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCC----ChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS----DQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~----~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|||||.+|++|+++.|+|+|++|... +|..|+..+++.|.+..+.....+.+.|.+.|.+++.++
T Consensus 71 ~~aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 71 AAADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDP 145 (167)
T ss_dssp HHHSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCH
T ss_pred HHcCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCc
Confidence 46899999999999999999999999999988 999999999999999999887777888999998887653
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.69 E-value=9.2e-17 Score=100.61 Aligned_cols=67 Identities=27% Similarity=0.481 Sum_probs=63.3
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCC--CCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPG--FSDQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~--~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 72 (77)
..||++|+|||++|++|+++.|+|++++|. ..||..||+++++.|+|+.++.++++++.+.++|+++
T Consensus 249 ~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 249 AAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 578999999999999999999999999998 6899999999999999999999999999999998764
No 30
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.63 E-value=1.7e-15 Score=97.11 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=65.7
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCC-----CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGF-----SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~-----~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|||+|.+|+.|+++.|+|+|++|+. .+|..|++++++.|++..+..++++.+.+.+++.+++.|+
T Consensus 251 ~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 251 AITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred HhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCH
Confidence 5789999999999999999999999999974 4899999999999999999888999999999999998764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.60 E-value=5.4e-15 Score=93.46 Aligned_cols=68 Identities=29% Similarity=0.482 Sum_probs=58.1
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCC--CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGF--SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~--~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
+.||++|+|+|++|++|++++|+|++.+|.. .||..||+++++.|+|+.++.+++ ++.+++.+++.++
T Consensus 246 ~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 246 KNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL---RLLEAILDIRNMK 315 (321)
T ss_pred HhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH---HHHHHHHhccccc
Confidence 7899999999999999999999999999985 489999999999999999987655 4555665555544
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=1.2e-14 Score=93.53 Aligned_cols=72 Identities=28% Similarity=0.425 Sum_probs=66.5
Q ss_pred CCccceEEecCChHHHHHHHHcCCCEEEeCCC----CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGF----SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~----~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..++|++||++|.+|+.|....|+|.|.+|.. .||..||+.+++.|.|..+...+++.+++.+.+.++++++
T Consensus 250 ~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 250 LAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNP 325 (357)
T ss_pred HHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCH
Confidence 35799999999999999999999999999864 4899999999999999999999999999999999998763
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.39 E-value=2.7e-12 Score=81.59 Aligned_cols=71 Identities=24% Similarity=0.442 Sum_probs=64.9
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCC----CCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPG----FSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~----~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
+.+|++|+|+|.++++|+++.|+|+|++|. ..+|..|+..+.+.|.|..+..++++.+.+.+++.++++|+
T Consensus 251 ~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~ 325 (357)
T PRK00726 251 AAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDP 325 (357)
T ss_pred HhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCH
Confidence 579999999999999999999999999986 36899999999999999999887888999999999998875
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.26 E-value=2.3e-11 Score=78.07 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=64.0
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCC---CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGF---SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~---~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
..++.+||.|||||++|.+++|+|.+++|.. .||...|++++++|+.-++.+++++++.+.++++..+.
T Consensus 293 ~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 293 AGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhccc
Confidence 3578999999999999999999999999975 58999999999999999999999999999999998876
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.20 E-value=1.2e-10 Score=73.58 Aligned_cols=71 Identities=27% Similarity=0.467 Sum_probs=62.8
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCC---CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGF---SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~---~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|+++|.++++|+++.|+|+|..|.. .+|..|++.+.+.+.|..++.++.+.+++.+++.++++|+
T Consensus 249 ~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 249 AAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDP 322 (348)
T ss_pred HhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCH
Confidence 5789999999988999999999999998753 4688899999999999998877778999999999999765
No 36
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.19 E-value=1.4e-10 Score=73.26 Aligned_cols=71 Identities=24% Similarity=0.458 Sum_probs=63.0
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCC----CCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPG----FSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~----~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|+++|.+|+.|++++|+|+++.|. ..+|..|+..+.+.|.|..++..+.+.+++.++++++++++
T Consensus 251 ~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 251 AAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred HhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCH
Confidence 579999999999999999999999999875 46889999999999999999876567899999999998764
No 37
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.11 E-value=4.6e-10 Score=72.80 Aligned_cols=67 Identities=24% Similarity=0.369 Sum_probs=59.1
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe-CCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~-P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|+.+|..|+.|+++.|+|+|.. |...+|..|+..+.+.|+|+... +.+++.+++.++++|+
T Consensus 272 ~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~ 339 (391)
T PRK13608 272 ASSQLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGN 339 (391)
T ss_pred HhhhEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCH
Confidence 5789999999999999999999999998 77677889999999999998865 5788888898888764
No 38
>KOG3349|consensus
Probab=99.07 E-value=2.2e-10 Score=66.08 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=45.0
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeC----CCCChHHHHHHHHHhCceeeeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMP----GFSDQHQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P----~~~~q~~na~~~~~~g~g~~~~~ 57 (77)
.++|++|+|+|.||++|.+..|+|.|+++ +.++|...|..+++.|--..-.+
T Consensus 79 ~~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~p 134 (170)
T KOG3349|consen 79 RSADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTP 134 (170)
T ss_pred hhccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeec
Confidence 35899999999999999999999999997 35799999999999886555444
No 39
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.89 E-value=9e-09 Score=66.50 Aligned_cols=66 Identities=18% Similarity=0.370 Sum_probs=56.3
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCC-CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGF-SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~-~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
..+|++|+.+|.+|+.|+++.|+|+|+.+.. +.+..|+..+.+.|.|+... +.+++.+++.+++.+
T Consensus 281 ~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~----~~~~la~~i~~ll~~ 347 (382)
T PLN02605 281 GACDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSE----SPKEIARIVAEWFGD 347 (382)
T ss_pred HhCCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecC----CHHHHHHHHHHHHcC
Confidence 4689999999999999999999999998644 44457999999999998763 688999999999876
No 40
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.87 E-value=1.6e-08 Score=65.02 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=57.1
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe-CCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~-P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|+.+|..|+.|+++.|+|+|+. |..+.+..|+..+.+.|+++... +.+++.+++.++++|+
T Consensus 272 ~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~----~~~~l~~~i~~ll~~~ 339 (380)
T PRK13609 272 RVTSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR----DDEEVFAKTEALLQDD 339 (380)
T ss_pred HhccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC----CHHHHHHHHHHHHCCH
Confidence 4689999999999999999999999985 66677888999999999988754 4788999999888764
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.83 E-value=2e-08 Score=65.57 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=55.2
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHh----CceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK----GMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~----g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|+.+|..| .|+...|+|+|.+|...+|. |+..+++. |.++.+.. .+.+.+.+++.++++|+
T Consensus 295 ~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~--~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 295 HWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS--KNPEQAAQVVRQLLADP 365 (396)
T ss_pred HhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--CCHHHHHHHHHHHHcCH
Confidence 57899999999877 99999999999999878887 88877764 77777653 34588888898888764
No 42
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.79 E-value=6.5e-09 Score=65.06 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=37.0
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~ 46 (77)
..+|++|++|| +|++|+++.|+|+|++|...+|..||+++
T Consensus 240 ~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 240 NEADLAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred HHCCEEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 57999999999 89999999999999999999999999753
No 43
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.61 E-value=3.6e-08 Score=64.10 Aligned_cols=70 Identities=19% Similarity=0.087 Sum_probs=61.3
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe----CCCC---------ChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM----PGFS---------DQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~----P~~~---------~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 72 (77)
..+|++|+.+|..|+ |++..|+|+|++ |+.. .|..|+..+.+.++...+-.++++++.+.+.+.++
T Consensus 266 ~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~l 344 (385)
T TIGR00215 266 FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLL 344 (385)
T ss_pred HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHH
Confidence 578999999999877 999999999999 6532 36778888999999988888899999999999999
Q ss_pred HcCC
Q psy14950 73 LNNP 76 (77)
Q Consensus 73 l~~~ 76 (77)
+.|+
T Consensus 345 l~~~ 348 (385)
T TIGR00215 345 LENG 348 (385)
T ss_pred hcCC
Confidence 9876
No 44
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=2.9e-07 Score=58.06 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=58.4
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..||+.|+-||. |++|+++.|+|.+++|...+|...|+.++.+|....+.+. +.+..+...+.++..|.
T Consensus 226 ke~d~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~ 294 (318)
T COG3980 226 KEADLAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDY 294 (318)
T ss_pred Hhcchheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHHHHHHHHhhhCH
Confidence 368999999998 8999999999999999999999999999999998888764 56666666666666553
No 45
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=8.5e-07 Score=50.73 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=44.6
Q ss_pred ccceEEecCChHHHHHHHHcCCCEEEeCCC--------CChHHHHHHHHHhCceeeeCC
Q psy14950 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGF--------SDQHQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~--------~~q~~na~~~~~~g~g~~~~~ 57 (77)
.++++|+|+|.||+..++..++|.|++|.. .+|...|..+.+.+.-+..++
T Consensus 65 darIVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~sp 123 (161)
T COG5017 65 DARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSP 123 (161)
T ss_pred cceEEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcC
Confidence 356999999999999999999999999964 478899999998888777765
No 46
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.27 E-value=2e-06 Score=55.18 Aligned_cols=70 Identities=17% Similarity=0.101 Sum_probs=48.7
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChH-HHHH------------HHHHhCceeeeCCCCCCHHHHHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQH-QNCK------------LMEEKGMGLITPHETITGDILYITIREV 72 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~-~na~------------~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 72 (77)
..+|++|+.+|.+++ |++++|+|+|..|...... ..++ .+.+.+++..+..++.+.+++.+.+.++
T Consensus 260 ~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 338 (380)
T PRK00025 260 AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPL 338 (380)
T ss_pred HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHH
Confidence 578999999999776 9999999999996442222 2222 2222333334444567789999999999
Q ss_pred HcCC
Q psy14950 73 LNNP 76 (77)
Q Consensus 73 l~~~ 76 (77)
++|+
T Consensus 339 l~~~ 342 (380)
T PRK00025 339 LADG 342 (380)
T ss_pred hcCH
Confidence 8875
No 47
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=97.94 E-value=5.5e-05 Score=49.48 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=51.3
Q ss_pred CccceEEe-----cCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFIT-----HGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~-----h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|+++. -+|..+++|++++|+|+|..|...++......+.+.|.++... +.+++.+++.++++|+
T Consensus 318 ~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~~La~~l~~ll~~~ 389 (425)
T PRK05749 318 AIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAEDLAKAVTYLLTDP 389 (425)
T ss_pred HhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHHHHHHHHHHHhcCH
Confidence 45677433 1344569999999999999998888888877777777776654 4788999999988765
No 48
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.91 E-value=5.6e-05 Score=48.09 Aligned_cols=63 Identities=22% Similarity=0.386 Sum_probs=47.9
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..||++|+.+| +.+.|+++.|+|+|.++...+ .....+.|.+..+.. +.+++.+++.++++++
T Consensus 276 ~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~~~~~---~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 276 KNADLVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVESGTNVLVGT---DPEAILAAIEKLLSDE 338 (363)
T ss_pred HcCcEEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEEecCC---CHHHHHHHHHHHhcCc
Confidence 46999999999 678899999999999964322 334455677666642 4789999999998875
No 49
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=5.3e-05 Score=50.10 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=51.1
Q ss_pred EEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 11 ~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
++.+||.| ..|.+++|+|+|.-|+..+|.+.++++.+.|.++.++. .+.+.+++..++.|
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~----~~~l~~~v~~l~~~ 386 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVED----ADLLAKAVELLLAD 386 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECC----HHHHHHHHHHhcCC
Confidence 56689997 99999999999999999999999999999999999983 56666666555554
No 50
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.85 E-value=1.5e-05 Score=51.65 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=51.1
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe-CCCCChHHHHHHHH---HhCceeee-------------CCCCCCHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLME---EKGMGLIT-------------PHETITGDILYIT 68 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~-P~~~~q~~na~~~~---~~g~g~~~-------------~~~~~~~~~l~~~ 68 (77)
..||++|+.+|..|+ |+...|+|+++. .....|..|++++. ..|+...+ -+++.+++.+.+.
T Consensus 234 ~~aDlal~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 234 LEAEFAFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred HhhhHHHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 468999999999888 999999999996 34578999999998 55665544 2356778888877
Q ss_pred HHH
Q psy14950 69 IRE 71 (77)
Q Consensus 69 i~~ 71 (77)
+.+
T Consensus 313 i~~ 315 (347)
T PRK14089 313 YKE 315 (347)
T ss_pred HHH
Confidence 654
No 51
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.67 E-value=0.00039 Score=44.65 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=46.3
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..++++++.+|.. +.|++++|+|+|..+...++.. ..+.|.+..+.. +.+++.+++.++++++
T Consensus 273 ~~ad~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~~---d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 273 ANSHLILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVGT---DKENITKAAKRLLTDP 335 (365)
T ss_pred HhCCEEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceEEeCC---CHHHHHHHHHHHHhCh
Confidence 4688999988764 7999999999999865444432 223466655542 6789999999988764
No 52
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.65 E-value=0.00025 Score=44.18 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=47.7
Q ss_pred CccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|+++..+. .++++|++++|+|+|+.+... +...+.+.+.|..++. .+.+++.+++.+++.++
T Consensus 265 ~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~~--~~~~~l~~~i~~l~~~~ 333 (364)
T cd03814 265 ASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVEP--GDAEAFAAALAALLADP 333 (364)
T ss_pred HhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcCC--CCHHHHHHHHHHHHcCH
Confidence 35788886654 478999999999999987543 3344555678887764 34677888998888765
No 53
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.36 E-value=0.00094 Score=38.28 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=46.5
Q ss_pred ccceEEec----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|++++. +...++.|++.+|+|+|+.. ...+...+.+...|..++.. +.+++.+++.++++++
T Consensus 92 ~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~~~g~~~~~~--~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 92 SSDIFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDGVNGFLFDPN--DIEELADAIEKLLNDP 159 (172)
T ss_dssp HTSEEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTTTSEEEESTT--SHHHHHHHHHHHHHHH
T ss_pred cceeccccccccccccccccccccccceeecc----ccCCceeeccccceEEeCCC--CHHHHHHHHHHHHCCH
Confidence 36777766 45679999999999999864 24445666666778888854 7899999999988754
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.29 E-value=0.00097 Score=41.01 Aligned_cols=64 Identities=25% Similarity=0.322 Sum_probs=45.3
Q ss_pred ccceEEec----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|++|.- +..+++.|++++|+|+|+.+.. .....+.+.+.|..++.. +.+++.+++.+++.++
T Consensus 275 ~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~----~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 275 AADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG----GIPEVVEDGETGLLVPPG--DPEALAEAILRLLDDP 342 (374)
T ss_pred hcCEEEecchhccccchHHHHHHcCCcEEEeCCC----ChhHHhcCCcceEEeCCC--CHHHHHHHHHHHHcCh
Confidence 46676643 4467899999999999998652 234445545677777643 3788999998887764
No 55
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.29 E-value=0.002 Score=39.97 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=45.9
Q ss_pred CccceEEec-----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITH-----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h-----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.++|+++.. +...++.|++++|+|+|.-+.. .....+.+.+.|..+... +.+++.+++.++++++
T Consensus 261 ~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 261 AEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGLLFPPG--DAEDLAAALERLIDDP 330 (359)
T ss_pred HhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEEEECCC--CHHHHHHHHHHHHhCh
Confidence 356777732 2346899999999999997543 234455555578877753 3788999999988764
No 56
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.26 E-value=0.002 Score=39.51 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=44.4
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhC-ceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKG-MGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|++|.... ..++.|++++|+|+|+.+....+. .+.+.+ .|..++. .+.+++.+++.++++++
T Consensus 252 ~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~--~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 252 KASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPN--GDVEALAEALLRLMEDE 320 (348)
T ss_pred hCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCC--CCHHHHHHHHHHHHcCH
Confidence 4677776542 468999999999999876443332 232333 7777764 24688999999988765
No 57
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.23 E-value=0.0014 Score=41.52 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=40.9
Q ss_pred hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 17 ~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+++.|++++|+|+|.-+... +...+.+.+.|..++. .+.+++.+++.++++++
T Consensus 284 ~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~~~~~--~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 284 PVVLLEAQASGVPVVATRHGG----IPEAVEDGETGLLVPE--GDVAALAAALGRLLADP 337 (367)
T ss_pred chHHHHHHHcCCCEEEeCCCC----chhheecCCeeEEECC--CCHHHHHHHHHHHHcCH
Confidence 578999999999999876533 4455556677887764 24688999999888764
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.16 E-value=0.0028 Score=39.06 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=45.2
Q ss_pred CccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|.... .++++|++.+|+|+|.-+... ....+.+.+.|..++.+ +.+++.+++.+++.++
T Consensus 262 ~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~~~~~~--~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 262 AAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGFLVPPG--DAEALADAIERLIEDP 330 (359)
T ss_pred HhccEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceEEECCC--CHHHHHHHHHHHHhCH
Confidence 35677775543 578999999999999975433 23444445677777642 4788888888887664
No 59
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.14 E-value=0.002 Score=40.12 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=43.5
Q ss_pred ccceEEecCC---------hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITHGG---------IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h~G---------~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|++|.... .+++.|++++|+|+|+.+....+.. +.+.+.|..++.+ +.+++.+++.+++.|+
T Consensus 294 ~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 294 AADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEAGAGLVVPPG--DPEALAAAILELLDDP 366 (394)
T ss_pred hhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccCCcceEeCCC--CHHHHHHHHHHHHhCh
Confidence 5677664322 3457999999999999976544332 2222567766643 5788999999988664
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.08 E-value=0.0044 Score=38.30 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=44.8
Q ss_pred ccceEEec----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.||+++.. +..+++.|++++|+|+|+-+... ....+.+.+.|..++. -+.+++.+++.++++++
T Consensus 278 ~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~~--~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 278 AADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVPP--GDPEALAEAILRLLADP 345 (377)
T ss_pred hcCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEECC--CCHHHHHHHHHHHhcCc
Confidence 45666632 44578999999999999875432 3345555566777664 35788899999988764
No 61
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.05 E-value=0.0042 Score=38.93 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=43.5
Q ss_pred ccceEEec-----CC-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITH-----GG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h-----~G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.||+++.- -| ..++.|++++|+|+|............. ..+.|..++. -+.+++.+++.++++++
T Consensus 263 ~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~--~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 263 ACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HGVTGLVVPP--GDPAALAEAIRRLLEDP 333 (357)
T ss_pred hCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CCCceEEeCC--CCHHHHHHHHHHHHHCH
Confidence 46666622 22 3579999999999999754443332222 2456777653 25789999999998765
No 62
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.03 E-value=0.0047 Score=38.20 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=42.3
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|+++.... .+++.|++++|+|+|+-.... +...+.+ .|..+..+ +.+++.+++.++++++
T Consensus 268 ~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~----~~e~~~~--~g~~~~~~--~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 268 ALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGD----NAELVGD--TGFLVPPG--DPEALAEAIEALLADP 333 (365)
T ss_pred hCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCC----hHHHhhc--CCEEeCCC--CHHHHHHHHHHHHhCh
Confidence 5677776544 378999999999999865432 2333333 45555532 4788999998888764
No 63
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=96.99 E-value=0.0031 Score=39.22 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=43.9
Q ss_pred ccceEEecC----ChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h~----G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|+++... ...++.|++++|+|+|+.+.. .....+.+.+.|..++..+. ++.+++.++++++
T Consensus 278 ~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~~~g~~~~~~~~---~~~~~i~~l~~~~ 344 (374)
T cd03817 278 AADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADGENGFLFPPGDE---ALAEALLRLLQDP 344 (374)
T ss_pred HcCEEEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecCceeEEeCCCCH---HHHHHHHHHHhCh
Confidence 466776443 347899999999999997542 23445555567877765332 8888888888765
No 64
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.89 E-value=0.0052 Score=39.18 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=45.7
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|+++...- ..+++|++++|+|+|+-+..+ ....+.+.+.|..++.. +.+++.+++.++++++
T Consensus 302 ~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 302 AADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDPR--DPEALAAALRRLLTDP 369 (398)
T ss_pred hCCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCCC--CHHHHHHHHHHHHhCH
Confidence 4677774422 368999999999999875432 44455666788887643 4788999998888764
No 65
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=96.77 E-value=0.0077 Score=39.53 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=46.0
Q ss_pred CccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+++++...- ..+++||+++|+|+|.-...+ ....+.+.+.|..+.. ..+.+++.+++.++++|+
T Consensus 309 ~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~-~~~~~~la~~I~~ll~~~ 378 (407)
T cd04946 309 NPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSK-DPTPNELVSSLSKFIDNE 378 (407)
T ss_pred cCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCC-CCCHHHHHHHHHHHHhCH
Confidence 34677765543 478999999999999864322 3345555457877764 335789999999988764
No 66
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=96.70 E-value=0.011 Score=37.77 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=45.1
Q ss_pred CccceEEecC----ChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCC----HHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETIT----GDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~----G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~----~~~l~~~i~~~l~~~ 76 (77)
..+|+++.-. -..+++|++++|+|+|+-... ...+.+.+...|..++..+.. .+.+.+++.++++++
T Consensus 279 ~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~ 353 (388)
T TIGR02149 279 SNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADP 353 (388)
T ss_pred HhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCH
Confidence 3577777542 235789999999999987542 234445555678887764432 278888888887664
No 67
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.61 E-value=0.0078 Score=37.57 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=43.3
Q ss_pred ccceEEec------CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITH------GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h------~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|+++.- +-.+++.|++++|+|+|.-+... ...+...+.|..++.. +.+++.+++.++++++
T Consensus 267 ~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~~~--d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 267 AADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVPPG--DPAALAEAIRRLLADP 335 (366)
T ss_pred hcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEcCC--CHHHHHHHHHHHHcCh
Confidence 46666632 33468999999999999876543 2334445667776643 4788999998888764
No 68
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=96.56 E-value=0.017 Score=36.18 Aligned_cols=56 Identities=29% Similarity=0.372 Sum_probs=38.6
Q ss_pred CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 15 GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 15 ~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
+..++++|++++|+|+|..+... ....+.+...|..+... +.+++.+++.++++++
T Consensus 273 ~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~~~~~~--~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 273 GLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGLLVPPG--DPEALADAIERLLDDP 328 (355)
T ss_pred CccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceEEeCCC--CHHHHHHHHHHHHhCH
Confidence 33578999999999999875432 12233444477777642 5788888888887664
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=96.55 E-value=0.016 Score=35.91 Aligned_cols=62 Identities=27% Similarity=0.346 Sum_probs=42.4
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|+++...- ..++.|++++|+|+|+-+..+ ....+.. +.|...+. +.+++.+++.++++++
T Consensus 281 ~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~~---~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 281 DADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVDD---DVDALAAALRRALELP 346 (375)
T ss_pred hCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeCC---ChHHHHHHHHHHHhCH
Confidence 4666665432 468999999999999976432 2333333 67776654 3488888998888764
No 70
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=96.55 E-value=0.016 Score=37.76 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=43.7
Q ss_pred CccceEEecC----C-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHG----G-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~----G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|... | ..+++|++++|+|+|.....+ +.+.+.+...|..+.. ..+.+++.+++.++++|+
T Consensus 275 ~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~~-~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 275 PLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGYHLAE-PMTSDSIISDINRTLADP 345 (380)
T ss_pred HhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceEEEeC-CCCHHHHHHHHHHHHcCH
Confidence 3567777533 2 267899999999999975422 2334444456664421 225789999999988765
No 71
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=96.54 E-value=0.023 Score=35.69 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=42.1
Q ss_pred ccceEEec----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCCC
Q psy14950 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPR 77 (77)
Q Consensus 7 ~~~~~i~h----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 77 (77)
.+|++|.. +-..+++||++.|+|+|.-..... ...+.+ +.+..... -+.+++.+++.+++++++
T Consensus 266 ~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~~-~~~~~~~~--~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 266 AMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLTD-LVKFLSLD--ESPEIWAEEILKLKSEDR 333 (358)
T ss_pred hcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhcc-CccEEeCC--CCHHHHHHHHHHHHhCcc
Confidence 45665543 335789999999999998744332 223333 44444432 247999999999998863
No 72
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=96.48 E-value=0.0049 Score=38.65 Aligned_cols=60 Identities=25% Similarity=0.282 Sum_probs=38.6
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
.+|+++.... .++++|+++.|+|+|+-... .....+.+ .|..+.. -+.+++.+++.++++
T Consensus 262 ~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~i~~--~g~~~~~--~~~~~~~~~i~~ll~ 325 (360)
T cd04951 262 AADLFVLSSAWEGFGLVVAEAMACELPVVATDAG----GVREVVGD--SGLIVPI--SDPEALANKIDEILK 325 (360)
T ss_pred hhceEEecccccCCChHHHHHHHcCCCEEEecCC----ChhhEecC--CceEeCC--CCHHHHHHHHHHHHh
Confidence 4566665443 57899999999999986432 23333443 3344443 257888888888874
No 73
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=96.46 E-value=0.0076 Score=37.86 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=42.7
Q ss_pred CccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|+++.... ..++.|++++|+|+|+.....-. ..+.+.+.|..++. .+.+++.+++.++++++
T Consensus 263 ~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~----e~~~~~~~g~~~~~--~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 263 SAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIP----DIVDHGVTGYLAKP--GDPEDLAEGIEWLLADP 331 (365)
T ss_pred HhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCCh----hheeCCCceEEeCC--CCHHHHHHHHHHHHhCH
Confidence 35788877542 57899999999999987532211 12223345666553 24788888888887664
No 74
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.44 E-value=0.016 Score=37.01 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=43.5
Q ss_pred CccceEEec----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|.- |-..+++||+++|+|+|.-.... +.+.+.+...|..++. -+.+++.+++.+++.++
T Consensus 271 ~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~--~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 271 QALDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPP--GDAVALARALQPYVSDP 339 (374)
T ss_pred HhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCC--CCHHHHHHHHHHHHhCH
Confidence 346777632 33578999999999999975432 3334444456777764 24678888888887654
No 75
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=96.42 E-value=0.036 Score=35.58 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=45.5
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCCC
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNPR 77 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~~ 77 (77)
.+|++|...- ..++.||+++|+|+|....... ....+.+...|..++. -+.+++.+++.+++++++
T Consensus 257 ~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~--~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 257 NVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG---PRDIIKPGLNGELYTP--GNIDEFVGKLNKVISGEV 326 (359)
T ss_pred cCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC---hHHHccCCCceEEECC--CCHHHHHHHHHHHHhCcc
Confidence 4677775432 5799999999999998741222 1134444456777754 368999999999988763
No 76
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.39 E-value=0.016 Score=36.74 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=42.3
Q ss_pred ccceEEec----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|++|.- +...++.|++++|+|+|.-... .....+.+...|..++.+ +.+++.+++.++++++
T Consensus 270 ~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~~--~~~~l~~~i~~l~~~~ 337 (371)
T cd04962 270 IADLFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVDVG--DVEAMAEYALSLLEDD 337 (371)
T ss_pred hcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcCCC--CHHHHHHHHHHHHhCH
Confidence 45666633 3356899999999999997542 234444444567666542 4677888888877653
No 77
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.28 E-value=0.025 Score=37.27 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=45.1
Q ss_pred CccceEEe----cCC---hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 6 RNCKLFIT----HGG---IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 6 ~~~~~~i~----h~G---~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
..+|+++. ..| .++++|++++|+|+|..... ...+.+++.+.|..++ +.+++.+++.++++|
T Consensus 313 ~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~~~~G~lv~----d~~~la~~i~~ll~~ 381 (415)
T cd03816 313 ASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKHGENGLVFG----DSEELAEQLIDLLSN 381 (415)
T ss_pred HhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcCCCCEEEEC----CHHHHHHHHHHHHhc
Confidence 35677773 112 45799999999999996432 3445566666788774 689999999999887
No 78
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.26 E-value=0.012 Score=38.26 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=41.3
Q ss_pred ccceEE--ec--CCh-HHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFI--TH--GGI-HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i--~h--~G~-~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|++| ++ .|. +.+.|++++|+|+|.-+...+.. ....+.|..+. .+.+++.+++.++++|+
T Consensus 297 ~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 297 HAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---ADPADFAAAILALLANP 363 (397)
T ss_pred hCCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC---CCHHHHHHHHHHHHcCH
Confidence 567766 32 243 46999999999999986432211 11235566664 26889999999988764
No 79
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.24 E-value=0.025 Score=37.73 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=44.8
Q ss_pred CccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHH---hCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE---KGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~---~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|++|.-.. ..+++|++++|+|+|.....+ ..+.+.+ -+.|..++.. +.+++.+++.++++|+
T Consensus 330 ~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 330 ASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG--DVDDCVEKLETLLADP 401 (465)
T ss_pred HHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC--CHHHHHHHHHHHHhCH
Confidence 35777775543 357899999999999875322 2223333 5678887643 4788999999888764
No 80
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.17 E-value=0.027 Score=36.42 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=42.7
Q ss_pred ccceEEec----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|+++.. +...++.|+++.|+|+|.....+ ....+.+...|..++.. +.+++.+++.++++++
T Consensus 302 ~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~--d~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 302 AADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDGH--DPADWADALARLLDDP 369 (405)
T ss_pred hCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCCC--CHHHHHHHHHHHHhCH
Confidence 56666642 22468999999999999975432 22334444567777642 4688888888887653
No 81
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.01 E-value=0.041 Score=36.25 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=43.8
Q ss_pred ccceEEec---------CCh-HHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc-C
Q psy14950 7 NCKLFITH---------GGI-HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN-N 75 (77)
Q Consensus 7 ~~~~~i~h---------~G~-~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~-~ 75 (77)
.+|++|.- -|. .+++|++++|+|+|.-...+ ..+.+.+-..|..++.. +.+++.+++.++++ |
T Consensus 298 ~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~lv~~~--d~~~la~ai~~l~~~d 371 (406)
T PRK15427 298 DADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWLVPEN--DAQALAQRLAAFSQLD 371 (406)
T ss_pred hCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEEeCCC--CHHHHHHHHHHHHhCC
Confidence 56777653 233 67899999999999975332 22344444567777643 47889999998887 5
Q ss_pred C
Q psy14950 76 P 76 (77)
Q Consensus 76 ~ 76 (77)
+
T Consensus 372 ~ 372 (406)
T PRK15427 372 T 372 (406)
T ss_pred H
Confidence 4
No 82
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=95.98 E-value=0.037 Score=33.93 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=40.3
Q ss_pred ccceEEec----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHH---HHHHHHHHcC
Q psy14950 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL---YITIREVLNN 75 (77)
Q Consensus 7 ~~~~~i~h----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l---~~~i~~~l~~ 75 (77)
.+|++|.. +..+++.|++++|+|+|+-... .....+.+...|...+.+ +.+.+ .+.+.++..+
T Consensus 263 ~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 263 AADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVG--DEAALAAAALALLDLLLD 332 (353)
T ss_pred hCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCC--CHHHHHHHHHHHHhccCC
Confidence 46666643 2356899999999999986433 344566667788887753 34555 4445444443
No 83
>PLN02275 transferase, transferring glycosyl groups
Probab=95.96 E-value=0.056 Score=35.04 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=42.5
Q ss_pred CccceEEe----cCC---hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 6 RNCKLFIT----HGG---IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 6 ~~~~~~i~----h~G---~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
..+|+++. ..| .++++|++++|+|+|...... ..+.+.+-+.|..++ +.+++.+++.+++
T Consensus 305 ~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg----~~eiv~~g~~G~lv~----~~~~la~~i~~l~ 371 (371)
T PLN02275 305 GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IGELVKDGKNGLLFS----SSSELADQLLELL 371 (371)
T ss_pred HhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCC----hHHHccCCCCeEEEC----CHHHHHHHHHHhC
Confidence 45788774 112 368999999999999974322 455556666788876 4788998888764
No 84
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=95.93 E-value=0.11 Score=33.94 Aligned_cols=62 Identities=24% Similarity=0.211 Sum_probs=41.1
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
..+|++|+-||. ...||...|+|.|.+ +.++-...-+++.+.|+-.... +.+++.+.+++.+
T Consensus 247 ~~a~l~Ig~ggT-Ma~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~~----~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 247 YYADLVIGGGGT-MAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHST----DPDEIVEYVRKNL 308 (335)
T ss_pred HhcCEEEeCCcH-HHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEecC----CHHHHHHHHHHhh
Confidence 357899998885 588999999999987 1233334456677777733333 4566666555443
No 85
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=95.92 E-value=0.0087 Score=32.94 Aligned_cols=51 Identities=25% Similarity=0.396 Sum_probs=32.0
Q ss_pred hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 17 ~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
.+++.|++.+|+|+|+.+. ......+..+.+..+.. +.+++.+++.++++|
T Consensus 85 ~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~~~---~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 85 PNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLVAN---DPEELAEAIERLLND 135 (135)
T ss_dssp -HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE-TT----HHHHHHHHHHHHH-
T ss_pred cHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEECC---CHHHHHHHHHHHhcC
Confidence 4899999999999999863 12223334566766632 689999999999875
No 86
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=95.88 E-value=0.057 Score=35.82 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=43.9
Q ss_pred cceEEecC---C-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 8 CKLFITHG---G-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 8 ~~~~i~h~---G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
+|+++... | ..+++||+++|+|+|.-.... ..+.+.+...|..++.. +.+++.+++.++++|+
T Consensus 341 ~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~~--d~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 341 RGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDVL--DLEAIASALEDALSDS 407 (439)
T ss_pred CCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCCC--CHHHHHHHHHHHHhCH
Confidence 47877653 2 368999999999999885432 23334444567777643 4788999998888764
No 87
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.69 E-value=0.044 Score=35.00 Aligned_cols=65 Identities=28% Similarity=0.335 Sum_probs=43.4
Q ss_pred ccceEEecC----ChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h~----G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|++|.-. ...+++||+++|+|+|....... ....+.+...|..++. -+.+++.+++.+++.++
T Consensus 278 ~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~--~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 278 KAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIEDGENGYLVPK--GDIEALAEAIIELLNDP 346 (372)
T ss_pred hhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHcccCCCceEeCC--CcHHHHHHHHHHHHcCH
Confidence 355555432 24689999999999998743211 2334445557777764 34788999999988764
No 88
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=95.67 E-value=0.041 Score=35.75 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+++|++++|+|+|.-... .....+.+-..|..++.. +.+++.+++.++++++
T Consensus 315 ~~llEAmA~G~PVIas~~~----g~~e~i~~~~~G~lv~~~--d~~~la~~i~~ll~~~ 367 (396)
T cd03818 315 WSLLEAMACGCLVVGSDTA----PVREVITDGENGLLVDFF--DPDALAAAVIELLDDP 367 (396)
T ss_pred hHHHHHHHCCCCEEEcCCC----CchhhcccCCceEEcCCC--CHHHHHHHHHHHHhCH
Confidence 5799999999999987432 233444444567776643 4789999999988764
No 89
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.63 E-value=0.088 Score=33.75 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=42.6
Q ss_pred CccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|+++.... ..+++|++++|+|+|..-..+. ...+.+.+.|..++. +.+++.+++.++++++
T Consensus 298 ~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~----~e~i~~~~~g~~~~~---~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 298 SSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGP----LETVVDGETGFLCEP---TPEEFAEAMLKLANDP 365 (392)
T ss_pred hhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCc----HHHhccCCceEEeCC---CHHHHHHHHHHHHhCh
Confidence 34666664322 3678999999999999743322 233444456776653 5788888998888765
No 90
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=95.61 E-value=0.047 Score=34.63 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=43.0
Q ss_pred ccceEEec--CC-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITH--GG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h--~G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+|+++.. -| ..++.|++++|+|+|.....+ ....+.+...|..++.+ +.+++.+++.++++++
T Consensus 261 ~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~--~~~~la~~i~~l~~~~ 327 (351)
T cd03804 261 RARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQ--TVESLAAAVERFEKNE 327 (351)
T ss_pred hCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCC--CHHHHHHHHHHHHhCc
Confidence 45666532 22 246789999999999985432 22334444678777642 4788999999998775
No 91
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.57 E-value=0.14 Score=32.13 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=39.9
Q ss_pred ccceEEecC-----ChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 7 NCKLFITHG-----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 7 ~~~~~i~h~-----G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
.+|++|.-. ..++++|++++|+|+|+..... ....+.+...|..++.+ +.+++.+++.+.+
T Consensus 263 ~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~~~ 328 (355)
T cd03819 263 LADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPGETGLLVPPG--DAEALAQALDQIL 328 (355)
T ss_pred hCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCCCceEEeCCC--CHHHHHHHHHHHH
Confidence 466666544 2369999999999999874322 23344444467777642 5778888886544
No 92
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.19 E-value=0.073 Score=35.71 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=42.8
Q ss_pred CccceEEecC----ChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHh------CceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 6 RNCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK------GMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 6 ~~~~~~i~h~----G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~------g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
..+|+++... -..+++|++++|+|+|.-... .....+.+. ..|..++. .+.+++.+++.++++|
T Consensus 369 ~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~~~elv~~~~~~~~g~~G~lv~~--~d~~~la~ai~~ll~~ 442 (475)
T cd03813 369 PKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVG----SCRELIEGADDEALGPAGEVVPP--ADPEALARAILRLLKD 442 (475)
T ss_pred HhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCC----ChHHHhcCCcccccCCceEEECC--CCHHHHHHHHHHHhcC
Confidence 3566666443 347899999999999985322 122333331 26777764 3478899999998876
Q ss_pred C
Q psy14950 76 P 76 (77)
Q Consensus 76 ~ 76 (77)
+
T Consensus 443 ~ 443 (475)
T cd03813 443 P 443 (475)
T ss_pred H
Confidence 4
No 93
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=95.01 E-value=0.043 Score=37.27 Aligned_cols=51 Identities=20% Similarity=0.430 Sum_probs=27.4
Q ss_pred ccceEEe---cCChHHHHHHHHcCCCEEEeCCC-CChHHHHHHHHHhCceeeeCC
Q psy14950 7 NCKLFIT---HGGIHSSMEAVYHGVPVVMMPGF-SDQHQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 7 ~~~~~i~---h~G~~t~~e~l~~g~P~i~~P~~-~~q~~na~~~~~~g~g~~~~~ 57 (77)
.+|+++- ..|..|.+|+++.|+|+|..|-. .-....+..+...|+.-.+-.
T Consensus 361 ~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~ 415 (468)
T PF13844_consen 361 LADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD 415 (468)
T ss_dssp G-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S
T ss_pred hCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC
Confidence 3555543 45778999999999999999743 233445556677787655543
No 94
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.96 E-value=0.13 Score=36.12 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=45.0
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeC-CCCChHHHHHHHHH--------------hCceeeeC--CCCCCHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMP-GFSDQHQNCKLMEE--------------KGMGLITP--HETITGDILYIT 68 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P-~~~~q~~na~~~~~--------------~g~g~~~~--~~~~~~~~l~~~ 68 (77)
..||+.+..+|. .+.|+...|+|++++= ...=....++++.+ ..+--.+= +++.+++++.++
T Consensus 487 ~aaD~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~ 565 (608)
T PRK01021 487 RECDCALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA 565 (608)
T ss_pred HhcCeeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH
Confidence 468999999998 5889999999999982 22223345555554 11111111 346678888888
Q ss_pred HHHHHcCC
Q psy14950 69 IREVLNNP 76 (77)
Q Consensus 69 i~~~l~~~ 76 (77)
+ +++.|+
T Consensus 566 l-~lL~d~ 572 (608)
T PRK01021 566 L-DILKTS 572 (608)
T ss_pred H-HHhcCH
Confidence 6 666654
No 95
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=94.91 E-value=0.11 Score=33.32 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=39.5
Q ss_pred CccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|+++..+- ..++.|++++|+|+|.-....- ...+.+...|...+ +.+.+..++.+++.++
T Consensus 272 ~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~----~~~i~~~~~g~~~~----~~~~~a~~i~~ll~~~ 338 (372)
T cd03792 272 RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGI----PLQIEDGETGFLVD----TVEEAAVRILYLLRDP 338 (372)
T ss_pred HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCc----hhhcccCCceEEeC----CcHHHHHHHHHHHcCH
Confidence 45777776542 3589999999999998753321 22344444566554 2455666777776553
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.80 E-value=0.24 Score=35.27 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=42.3
Q ss_pred ccceEEe---cCC-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 7 NCKLFIT---HGG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 7 ~~~~~i~---h~G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
.+|+++. +-| .++++|++.+|+|+|.-...+ ....+.+-..|..++..+.+.+++.+++.+++.
T Consensus 591 aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~ 658 (694)
T PRK15179 591 QFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLPADTVTAPDVAEALARIHD 658 (694)
T ss_pred hcCEEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHh
Confidence 4566664 233 488999999999999975422 333444445688887766666667666666554
No 97
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=94.77 E-value=0.068 Score=35.33 Aligned_cols=70 Identities=21% Similarity=0.212 Sum_probs=47.9
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeC-CCCChHHHHHHHHHhC---ceee---------eCCCCCCHHHHHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMP-GFSDQHQNCKLMEEKG---MGLI---------TPHETITGDILYITIREV 72 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P-~~~~q~~na~~~~~~g---~g~~---------~~~~~~~~~~l~~~i~~~ 72 (77)
..||+.+.-+|. .+.|+...|+|++++= ...=....++++.+.. +.-. +-+++.+++.+.+++.++
T Consensus 259 ~~ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~l 337 (373)
T PF02684_consen 259 AAADAALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLEL 337 (373)
T ss_pred HhCcchhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHH
Confidence 468888999988 5889999999999982 2233445566654332 2111 112467889999999988
Q ss_pred HcCC
Q psy14950 73 LNNP 76 (77)
Q Consensus 73 l~~~ 76 (77)
+.|+
T Consensus 338 l~~~ 341 (373)
T PF02684_consen 338 LENP 341 (373)
T ss_pred hcCH
Confidence 8775
No 98
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.56 E-value=0.19 Score=26.06 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=37.0
Q ss_pred cCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhC-ceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 14 HGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKG-MGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 14 h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+-...++|++++|+|+|.-+. ......+ ..| -++..+ +.+++.+.+..+++|+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~~~~~~~~~----~~~el~~~i~~ll~~~ 63 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-EDGEHIITYN----DPEELAEKIEYLLENP 63 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CCCCeEEEEC----CHHHHHHHHHHHHCCH
Confidence 3445689999999999999853 2222222 223 344444 6899999999998875
No 99
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.46 E-value=0.24 Score=31.32 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.3
Q ss_pred ccceEEecCChHHHHHHHH------cCCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVY------HGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~------~g~P~i~~P 34 (77)
.+|++|+-||-||++.++. .++|++.+.
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 5799999999999999976 478988885
No 100
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.07 E-value=0.56 Score=31.57 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=47.3
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceee-eCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLI-TPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~-~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.+||++|..==+ +..-++..|+|++.+++ + ......+...|..-. .+.++++.+++.+.+.+++++.
T Consensus 326 s~~dl~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r 393 (426)
T PRK10017 326 GACELTVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQL 393 (426)
T ss_pred hhCCEEEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCH
Confidence 345666654333 45567888999999986 2 445555678887754 6667888888998888888763
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=94.05 E-value=0.14 Score=33.33 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=40.0
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
..|+++|+..| |-..|+...|+|.|.+=...+... ....|..+.+. .+.+++.+++.+++.+
T Consensus 257 ~~a~~vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe----~r~~~~nvlv~---~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 257 KNADLVVGDSS-GIQEEAPSLGKPVVNIRDSGERQE----GRERGSNVLVG---TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHESEEEESSH-HHHHHGGGGT--EEECSSS-S-HH----HHHTTSEEEET---SSHHHHHHHHHHHHH-
T ss_pred hcceEEEEcCc-cHHHHHHHhCCeEEEecCCCCCHH----HHhhcceEEeC---CCHHHHHHHHHHHHhC
Confidence 46889999999 544499999999999932222222 22335555544 4789999999988864
No 102
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.90 E-value=0.33 Score=31.30 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.4
Q ss_pred ccceEEecCChHHHHHHHHc----CCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g~P~i~~P 34 (77)
.+|++|+=||-||++.++.. ++|++.+-
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN 99 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTIN 99 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEe
Confidence 47999999999999999774 78998884
No 103
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.86 E-value=0.4 Score=31.22 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=37.5
Q ss_pred ccceEEecC---C-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 7 NCKLFITHG---G-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 7 ~~~~~i~h~---G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
.+|+++.-. | ..++.||+++|+|+|.-+..+- ...+.+ |.+..... +.+++.+++.+++++
T Consensus 269 ~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~~-~~~~~~~~---~~~~l~~~l~~~l~~ 333 (398)
T cd03796 269 QGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLPP-DMILLAEP---DVESIVRKLEEAISI 333 (398)
T ss_pred hCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhheeC-CceeecCC---CHHHHHHHHHHHHhC
Confidence 467776533 2 2589999999999998754321 122222 32333332 568888888887764
No 104
>PRK10307 putative glycosyl transferase; Provisional
Probab=93.86 E-value=0.45 Score=31.04 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
+.+.|++++|+|+|.....+.. ....+. +.|..++.. +.+++.+++.++++|+
T Consensus 322 ~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~~--d~~~la~~i~~l~~~~ 374 (412)
T PRK10307 322 SKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEPE--SVEALVAAIAALARQA 374 (412)
T ss_pred HHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCCC--CHHHHHHHHHHHHhCH
Confidence 3478999999999998543321 112222 677777643 4788999998887664
No 105
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=93.72 E-value=0.45 Score=30.44 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=24.1
Q ss_pred ccceEEecCChHHHHHHHHc----CCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g~P~i~~P 34 (77)
.+|++|+-||-||+.+++.. ++|++.+.
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn 94 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLAPYGVPLIGIN 94 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 57999999999999999874 77888874
No 106
>PLN02846 digalactosyldiacylglycerol synthase
Probab=93.68 E-value=0.4 Score=32.65 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=38.6
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
.+|+||.-+- ..++.||+++|+|+|....... ..+.+.+-|...+ +.+++.+++.+++.+
T Consensus 300 ~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~~ng~~~~----~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 300 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQFPNCRTYD----DGKGFVRATLKALAE 363 (462)
T ss_pred hCCEEEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecCCceEecC----CHHHHHHHHHHHHcc
Confidence 4577777643 4789999999999999843321 3333333444442 466777777777654
No 107
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.53 E-value=0.47 Score=30.37 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=23.7
Q ss_pred ccceEEecCChHHHHHHHHc----CCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g~P~i~~P 34 (77)
.+|++|+=||-||++.++.. ++|++.+-
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN 95 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAAEYDKFVLGIH 95 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCcEEEEe
Confidence 58999999999999988663 78988884
No 108
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.51 E-value=0.16 Score=29.43 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=25.7
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCC
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFS 37 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~ 37 (77)
.||++++... .+++.|++++|+|+|+-+...
T Consensus 181 ~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 181 AADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4888888776 689999999999999986543
No 109
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=93.29 E-value=0.41 Score=30.69 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHH
Q psy14950 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 72 (77)
+-+.+.+++|+|+|+.+ ....++.+++.++|..++ +.+++.+.+.++
T Consensus 251 ~K~~~ymA~G~PVI~~~----~~~~~~~V~~~~~G~~v~----~~~el~~~l~~~ 297 (333)
T PRK09814 251 HKLSLYLAAGLPVIVWS----KAAIADFIVENGLGFVVD----SLEELPEIIDNI 297 (333)
T ss_pred HHHHHHHHCCCCEEECC----CccHHHHHHhCCceEEeC----CHHHHHHHHHhc
Confidence 34778899999999964 356778888999999987 355666666553
No 110
>PLN02501 digalactosyldiacylglycerol synthase
Probab=93.05 E-value=0.46 Score=34.33 Aligned_cols=62 Identities=23% Similarity=0.185 Sum_probs=39.9
Q ss_pred CccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|+||.-+= ..++.||+++|+|+|......... +..-+.|... -+.+++.+++.+++.++
T Consensus 617 asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGll~----~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 617 HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSFPNCLTY----KTSEDFVAKVKEALANE 682 (794)
T ss_pred HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----EeecCCeEec----CCHHHHHHHHHHHHhCc
Confidence 35677766432 478999999999999985433221 1112223322 25788999999988765
No 111
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.88 E-value=0.64 Score=29.83 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=24.1
Q ss_pred ccceEEecCChHHHHHHHHc----CCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g~P~i~~P 34 (77)
.+|++|+=||-||++.++.. ++|++.+-
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN 95 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVGNSNIPILGIN 95 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEe
Confidence 47999999999999998873 78998884
No 112
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.77 E-value=0.61 Score=30.15 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=24.8
Q ss_pred ccceEEecCChHHHHHHHHc----CCCEEEeCC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMPG 35 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g~P~i~~P~ 35 (77)
.+|++|+=||-||++.++.. ++|++.+..
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~ 104 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELARAADVPVLGVNL 104 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhccCCCcEEEEec
Confidence 57999999999999998764 789998853
No 113
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=92.77 E-value=0.57 Score=35.00 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=42.8
Q ss_pred cceEEecC---C-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 8 CKLFITHG---G-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 8 ~~~~i~h~---G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.|+||.-+ | ..++.||+++|+|+|.-...+ ....+....-|..+++. +.+.+.++|.+++.|+
T Consensus 572 ~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlLVdP~--D~eaLA~AL~~LL~Dp 638 (1050)
T TIGR02468 572 KGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLLVDPH--DQQAIADALLKLVADK 638 (1050)
T ss_pred CCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEEECCC--CHHHHHHHHHHHhhCH
Confidence 35777653 2 368999999999999985432 11223333457777653 4788999999988764
No 114
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=92.70 E-value=0.21 Score=31.09 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=33.4
Q ss_pred hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 17 ~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.++++|++++|+|+|+-....- .+.+. ..|..+... +.+++.+++.+++.|+
T Consensus 286 ~~~~~Ea~a~G~pvI~~~~~~~----~e~~~--~~~~~~~~~--~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 286 GLPVLEAMACGTPVIASNISSL----PEVAG--DAALYFDPL--DPEALAAAIERLLEDP 337 (365)
T ss_pred CCCHHHHhcCCCcEEecCCCCc----cceec--CceeeeCCC--CHHHHHHHHHHHhcCH
Confidence 4579999999999998643211 11111 234444432 5788999999887764
No 115
>PHA01633 putative glycosyl transferase group 1
Probab=92.69 E-value=0.56 Score=30.64 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=41.6
Q ss_pred CccceEEecC---C-hHHHHHHHHcCCCEEEe--CCC----CCh------HHHHHHHH--HhCceeeeCCCCCCHHHHHH
Q psy14950 6 RNCKLFITHG---G-IHSSMEAVYHGVPVVMM--PGF----SDQ------HQNCKLME--EKGMGLITPHETITGDILYI 67 (77)
Q Consensus 6 ~~~~~~i~h~---G-~~t~~e~l~~g~P~i~~--P~~----~~q------~~na~~~~--~~g~g~~~~~~~~~~~~l~~ 67 (77)
..+|+++.-+ | ..++.||+++|+|+|.- |-. +++ ..+..... +.|.|..++ ..+++++.+
T Consensus 222 ~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~--~~d~~~la~ 299 (335)
T PHA01633 222 GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIH--KFQIEDMAN 299 (335)
T ss_pred HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeec--CCCHHHHHH
Confidence 3577777643 2 46899999999999886 211 111 12222222 235666655 457899999
Q ss_pred HHHHHHc
Q psy14950 68 TIREVLN 74 (77)
Q Consensus 68 ~i~~~l~ 74 (77)
++.+++.
T Consensus 300 ai~~~~~ 306 (335)
T PHA01633 300 AIILAFE 306 (335)
T ss_pred HHHHHHh
Confidence 9988743
No 116
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.62 E-value=0.56 Score=29.82 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=24.4
Q ss_pred ccceEEecCChHHHHHHHH---cCCCEEEeCC
Q psy14950 7 NCKLFITHGGIHSSMEAVY---HGVPVVMMPG 35 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~---~g~P~i~~P~ 35 (77)
.+|++|+-||-||+.+++. .++|++.+|.
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 5899999999999999885 3568888874
No 117
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.55 E-value=0.57 Score=30.10 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=24.1
Q ss_pred ccceEEecCChHHHHHHHH----cCCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~----~g~P~i~~P 34 (77)
.+|++|+=||-||++.++. .++|++.+-
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN 99 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIAPRAVPIIGIN 99 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCEEEEe
Confidence 5899999999999999875 378998884
No 118
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.22 E-value=0.11 Score=35.64 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=38.3
Q ss_pred ccceEEecC---ChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITHG---GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h~---G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.++++|.-+ |.++.+||+++|+|+|- .-....+....=|..++ +..++.+++..+|.++
T Consensus 428 ~arl~id~s~~eg~~~~ieAiS~GiPqIn-------yg~~~~V~d~~NG~li~----d~~~l~~al~~~L~~~ 489 (519)
T TIGR03713 428 KLRLIIDLSKEPDLYTQISGISAGIPQIN-------KVETDYVEHNKNGYIID----DISELLKALDYYLDNL 489 (519)
T ss_pred hheEEEECCCCCChHHHHHHHHcCCCeee-------cCCceeeEcCCCcEEeC----CHHHHHHHHHHHHhCH
Confidence 445555543 66799999999999992 11233444444455553 4678888888777654
No 119
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.09 E-value=0.88 Score=28.82 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=23.9
Q ss_pred CccceEEecCChHHHHHHHHc-----CCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYH-----GVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~-----g~P~i~~P~ 35 (77)
..+|++|+=||-||++.++.. .+|++.+..
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~ 72 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGIST 72 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEec
Confidence 357999999999999999874 567776643
No 120
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=92.03 E-value=1.2 Score=29.21 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=37.6
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceee-eCCCCCCHHHHHHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLI-TPHETITGDILYITIREVL 73 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~-~~~~~~~~~~l~~~i~~~l 73 (77)
..|+++|+.++.+. .|+...|+|.|.+- +.. ...+.|..+. +. .+.+++.+++.+++
T Consensus 280 ~~a~~vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~g~nvl~vg---~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 280 KNADAVIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLRADSVIDVD---PDKEEIVKAIEKLL 337 (365)
T ss_pred HhCCEEEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhhcCeEEEeC---CCHHHHHHHHHHHh
Confidence 46899999986654 99999999999873 111 1113343333 33 25788888888754
No 121
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=91.95 E-value=0.34 Score=30.42 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
+++.|++++|+|+|+....... ..+.. .|..+... +.+.+++.+++++
T Consensus 283 ~~~~EAma~G~PvI~s~~~~~~----e~~~~--~g~~~~~~----~~l~~~i~~l~~~ 330 (363)
T cd04955 283 PSLLEAMAYGCPVLASDNPFNR----EVLGD--KAIYFKVG----DDLASLLEELEAD 330 (363)
T ss_pred hHHHHHHHcCCCEEEecCCccc----eeecC--CeeEecCc----hHHHHHHHHHHhC
Confidence 6799999999999987432211 11111 23333321 1277777777665
No 122
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.92 E-value=1.2 Score=27.97 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=24.6
Q ss_pred CccceEEecCChHHHHHHHH-cCCCEEEeC
Q psy14950 6 RNCKLFITHGGIHSSMEAVY-HGVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~-~g~P~i~~P 34 (77)
..+|++|+=||-||++.++. .++|++.+.
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin 69 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFK 69 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEe
Confidence 46799999999999998876 588888874
No 123
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.78 E-value=1.1 Score=28.51 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=23.3
Q ss_pred ccceEEecCChHHHHHHHHc-CCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH-GVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~-g~P~i~~P 34 (77)
.+|++|+=||-||+..++.. ..|++.+-
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN 80 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGIN 80 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEE
Confidence 57999999999999998873 56887773
No 124
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=91.68 E-value=0.89 Score=29.50 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
+.++|++++|+|+|..+.. ......+.+..... +.+++.+++.+++.+
T Consensus 293 ~Kl~EylA~G~PVVat~~~-------~~~~~~~~~~~~~~---d~~~~~~ai~~~l~~ 340 (373)
T cd04950 293 LKLFEYLAAGKPVVATPLP-------EVRRYEDEVVLIAD---DPEEFVAAIEKALLE 340 (373)
T ss_pred chHHHHhccCCCEEecCcH-------HHHhhcCcEEEeCC---CHHHHHHHHHHHHhc
Confidence 5689999999999987531 11122232333332 688999999887644
No 125
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.43 E-value=1.1 Score=28.77 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=23.6
Q ss_pred ccceEEecCChHHHHHHHH----cCCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~----~g~P~i~~P 34 (77)
.+|++|+=||-||+..++. .++|++.+-
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin 94 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLARYDIKVIGIN 94 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCeEEEEE
Confidence 4799999999999999975 367888874
No 126
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=91.11 E-value=2.6 Score=29.01 Aligned_cols=71 Identities=18% Similarity=0.263 Sum_probs=54.0
Q ss_pred CCCccceEEecCCh--------------HHHHHHHHcCCCEEEe-----CCCCChHHHHHHH-HHhCceee-eCCCCCCH
Q psy14950 4 GHRNCKLFITHGGI--------------HSSMEAVYHGVPVVMM-----PGFSDQHQNCKLM-EEKGMGLI-TPHETITG 62 (77)
Q Consensus 4 ~~~~~~~~i~h~G~--------------~t~~e~l~~g~P~i~~-----P~~~~q~~na~~~-~~~g~g~~-~~~~~~~~ 62 (77)
-|....++||--|+ .++.|.-.-|+|++++ |...+-...+..+ +++++-+. ++-..++.
T Consensus 143 dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~ 222 (492)
T PF09547_consen 143 DHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLRE 222 (492)
T ss_pred cCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCH
Confidence 57788889998885 3455666789999998 6666666777777 56687654 66678889
Q ss_pred HHHHHHHHHHHc
Q psy14950 63 DILYITIREVLN 74 (77)
Q Consensus 63 ~~l~~~i~~~l~ 74 (77)
+++...++++|-
T Consensus 223 ~DI~~Il~~vLy 234 (492)
T PF09547_consen 223 EDITRILEEVLY 234 (492)
T ss_pred HHHHHHHHHHHh
Confidence 999999988874
No 127
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.85 E-value=1.3 Score=30.94 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.2
Q ss_pred ccceEEecCChHHHHHHHHc----CCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g~P~i~~P 34 (77)
.+|++|+-||-||++.+... ++|++.+-
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin 379 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICIN 379 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 57999999999999999764 78988884
No 128
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=90.59 E-value=0.99 Score=30.17 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=42.4
Q ss_pred ccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.|.+++|-+|.. .-||...|+|.+++-..-+++. ..+.|.-+.+.. +.+.+.++++++++++
T Consensus 281 ~a~~iltDSGgi-qEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg~---~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 281 NAFLILTDSGGI-QEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVGT---DEENILDAATELLEDE 342 (383)
T ss_pred hceEEEecCCch-hhhHHhcCCcEEeeccCCCCcc----ceecCceEEeCc---cHHHHHHHHHHHhhCh
Confidence 467888888874 8899999999999965555554 223344444443 4577777777777653
No 129
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=90.25 E-value=1.3 Score=27.51 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=37.3
Q ss_pred ccceEEec----CC-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 7 NCKLFITH----GG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 7 ~~~~~i~h----~G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
.+|+++.. -| ..++.|++++|+|+|.-...+ ....+.+...|..++. .+++.+++.++..
T Consensus 243 ~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~ 307 (335)
T cd03802 243 NARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFLVDS----VEELAAAVARADR 307 (335)
T ss_pred hCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEEeCC----HHHHHHHHHHHhc
Confidence 45666532 23 368999999999999875432 1123333335666653 7777777776643
No 130
>PLN02929 NADH kinase
Probab=90.11 E-value=1.4 Score=28.46 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=41.5
Q ss_pred CccceEEecCChHHHHHHHH---cCCCEEEeCCCC------ChHHHHHHHHH-hCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 6 RNCKLFITHGGIHSSMEAVY---HGVPVVMMPGFS------DQHQNCKLMEE-KGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~---~g~P~i~~P~~~------~q~~na~~~~~-~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
..+|++|+-||-||++.+.. .++|++.+-... ++..+. +.+ ..+|-... .+.+++.+.+.++++.
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~--~~~~r~lGfL~~---~~~~~~~~~L~~il~g 137 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDE--FDARRSTGHLCA---ATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccc--cccccCcccccc---CCHHHHHHHHHHHHcC
Confidence 46899999999999998865 478999984421 111111 111 12443332 3567888888888764
No 131
>PHA01630 putative group 1 glycosyl transferase
Probab=89.81 E-value=2.6 Score=27.32 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred ccceEEe--c--CChHHHHHHHHcCCCEEEeCC
Q psy14950 7 NCKLFIT--H--GGIHSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 7 ~~~~~i~--h--~G~~t~~e~l~~g~P~i~~P~ 35 (77)
.+|+++. + +-..++.||+++|+|+|.-..
T Consensus 209 ~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~ 241 (331)
T PHA01630 209 GCDILFYPVRGGAFEIPVIEALALGLDVVVTEK 241 (331)
T ss_pred hCCEEEECCccccCChHHHHHHHcCCCEEEeCC
Confidence 4666663 2 224689999999999999743
No 132
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.74 E-value=2.2 Score=27.46 Aligned_cols=53 Identities=34% Similarity=0.483 Sum_probs=35.9
Q ss_pred ccceEEecCChHHHHHHHH----cCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~----~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
.+|++|+=||-||+.+++. .++|++.+... .+|-. .+.+.+++.+++.+++++
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGFl---~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALARHNVPVLGINRG-------------RLGFL---TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-------------ccccc---ccCCHHHHHHHHHHHHcC
Confidence 4789999999999999875 37788888531 01211 134567777777777654
No 133
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=89.61 E-value=1.1 Score=30.09 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=39.7
Q ss_pred CccceEEecC---C-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHH------hCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 6 RNCKLFITHG---G-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE------KGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 6 ~~~~~~i~h~---G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~------~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
..+|+++.-. | ..+.+||+++|+|.|+-...+ ....+.+ .+.|..++.. +.+++.+++.+++.
T Consensus 364 ~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l~~~~--d~~~la~~i~~~l~ 436 (473)
T TIGR02095 364 AGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFLFEEY--DPGALLAALSRALR 436 (473)
T ss_pred HhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHH
Confidence 4577777543 2 247899999999999864321 1111222 2567777642 46788888877765
No 134
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=89.61 E-value=1.9 Score=29.90 Aligned_cols=28 Identities=32% Similarity=0.302 Sum_probs=23.5
Q ss_pred ccceEEecCChHHHHHHHHc----CCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g~P~i~~P 34 (77)
.+|++|+=||-||++.+... ++|++.+.
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN 293 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPFS 293 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 58999999999999999774 56887774
No 135
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=89.28 E-value=0.59 Score=31.10 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=40.0
Q ss_pred CccceEEecC----ChHHHHHHHHcCCCEEEeCCCC--ChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 6 RNCKLFITHG----GIHSSMEAVYHGVPVVMMPGFS--DQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 6 ~~~~~~i~h~----G~~t~~e~l~~g~P~i~~P~~~--~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
..+|+++... -..+.+|++++|+|.|+-...+ |...+.....+.|.|..++.. +.+++.+++.+++.
T Consensus 369 ~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~--~~~~l~~~i~~~l~ 441 (476)
T cd03791 369 AGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY--NADALLAALRRALA 441 (476)
T ss_pred HhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC--CHHHHHHHHHHHHH
Confidence 3577777542 2257899999999999764321 111111111134578777643 46788888877664
No 136
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=88.09 E-value=4 Score=27.17 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=49.1
Q ss_pred ccceEEec----CChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 7 NCKLFITH----GGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 7 ~~~~~i~h----~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
+||+.|.. =|.|+++-.+..|+|+.+-- +...-+.+.+.|+-+....++++...++++=+++..
T Consensus 265 ~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~----~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 265 RCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR----DNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred hCCEEEEeechhhhHhHHHHHHHcCCeEEEec----CChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhh
Confidence 45554443 36799999999999998862 233455677779988888889999999999888754
No 137
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=87.49 E-value=4.8 Score=29.46 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=39.6
Q ss_pred cceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 8 CKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 8 ~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
+|+||.-+= ..++.||+++|+|+|.-...+ ....+.+-.-|..+++. +.+++.+++.+++
T Consensus 644 adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGfLVdp~--D~eaLA~aL~~ll 707 (784)
T TIGR02470 644 KGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGFHIDPY--HGEEAAEKIVDFF 707 (784)
T ss_pred CcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHHHHHHHHHHHH
Confidence 456775432 368999999999999864322 33344445568777753 3677777777654
No 138
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=87.45 E-value=0.22 Score=29.28 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCCccceEEecCChHHHHHHHHcCCCEEEeCCCC
Q psy14950 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS 37 (77)
Q Consensus 4 ~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~ 37 (77)
.+..+|++|++||......... ++|++-+|...
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 5688999999999877777766 99999998643
No 139
>PLN00142 sucrose synthase
Probab=87.33 E-value=2.8 Score=30.74 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=37.5
Q ss_pred cceEEecC---C-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHH
Q psy14950 8 CKLFITHG---G-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (77)
Q Consensus 8 ~~~~i~h~---G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 72 (77)
+|+|+.-+ | ..++.||+++|+|+|.-...+ ....+.+-..|..+++. +.+++.+++.++
T Consensus 667 aDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~P~--D~eaLA~aI~~l 729 (815)
T PLN00142 667 KGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHIDPY--HGDEAANKIADF 729 (815)
T ss_pred CCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHHHHHHHHHHH
Confidence 46777542 2 358999999999998864322 23344444568887753 356666666543
No 140
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.29 E-value=3.8 Score=26.11 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.4
Q ss_pred ccceEEecCChHHHHHHHH----cCCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVY----HGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~----~g~P~i~~P 34 (77)
.+|++|+=||-||++.++. .++|++.+-
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 4799999999999998765 378988884
No 141
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=87.18 E-value=1.5 Score=29.10 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCEEEeCCCCChHHHHHHHH---HhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 18 HSSMEAVYHGVPVVMMPGFSDQHQNCKLME---EKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~P~~~~q~~na~~~~---~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.++.|++++|+|.|.....+... ..+. +-..|...+ +.+++.+++.++++++
T Consensus 339 i~~lEAMa~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~~----d~~~la~ai~~ll~~~ 393 (419)
T cd03806 339 IGVVEYMAAGLIPLAHASGGPLL---DIVVPWDGGPTGFLAS----TAEEYAEAIEKILSLS 393 (419)
T ss_pred cHHHHHHHcCCcEEEEcCCCCch---heeeccCCCCceEEeC----CHHHHHHHHHHHHhCC
Confidence 57899999999999874322111 1111 234566643 6889999999998754
No 142
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=87.13 E-value=2.6 Score=28.90 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=39.3
Q ss_pred ccceEEecC----ChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCC--CCC----HHHHHHHHHHHHc
Q psy14950 7 NCKLFITHG----GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHE--TIT----GDILYITIREVLN 74 (77)
Q Consensus 7 ~~~~~i~h~----G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~--~~~----~~~l~~~i~~~l~ 74 (77)
.++++|.-. -..+++||+++|+|+|....... ....+.+-.-|..++.. .-+ .+.+.+++.++++
T Consensus 392 ~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~ 466 (500)
T TIGR02918 392 DYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN 466 (500)
T ss_pred hCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC
Confidence 345555432 24789999999999999743211 22334444457766531 112 5678888887774
No 143
>PLN02727 NAD kinase
Probab=86.03 E-value=4.4 Score=30.30 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=24.1
Q ss_pred ccceEEecCChHHHHHHHHc----CCCEEEeC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g~P~i~~P 34 (77)
.+|++|+=||-||++.++.. ++|++.+-
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~~~~iPILGIN 774 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFRGAVPPVVSFN 774 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEe
Confidence 58999999999999999764 68888874
No 144
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.17 E-value=0.65 Score=31.38 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=37.3
Q ss_pred cceEEecCC--hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 8 CKLFITHGG--IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 8 ~~~~i~h~G--~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.-+-|+|+. ..++.||+.+|+|++..-...+. ...+.. |..+... +.+++.++|++++.++
T Consensus 350 lyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~~---g~l~~~~--~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 350 IYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIAS---ENIFEHN--EVDQLISKLKDLLNDP 412 (438)
T ss_pred EEEEccccccHHHHHHHHHHcCCcEEEEecccCC---cccccC---CceecCC--CHHHHHHHHHHHhcCH
Confidence 334566766 48899999999999987322111 111111 3344332 3677888888777664
No 145
>KOG4180|consensus
Probab=85.07 E-value=0.62 Score=30.69 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCccceEEecCChHHHHHHHH----cCCCEEEe
Q psy14950 5 HRNCKLFITHGGIHSSMEAVY----HGVPVVMM 33 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~----~g~P~i~~ 33 (77)
.+++|++|+-||-||++-|.. -.+|+|.+
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGV 135 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeee
Confidence 468999999999999987765 58999988
No 146
>PRK00654 glgA glycogen synthase; Provisional
Probab=84.82 E-value=2.3 Score=28.55 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=39.2
Q ss_pred CccceEEecC---C-hHHHHHHHHcCCCEEEeCCC--CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 6 RNCKLFITHG---G-IHSSMEAVYHGVPVVMMPGF--SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 6 ~~~~~~i~h~---G-~~t~~e~l~~g~P~i~~P~~--~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
..+|+++.-. | ..+.+||+++|+|.|+-... .|...+...-.+.+.|..++.. +.+++.+++.+++.
T Consensus 355 ~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~--d~~~la~~i~~~l~ 427 (466)
T PRK00654 355 AGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF--NAEDLLRALRRALE 427 (466)
T ss_pred hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHH
Confidence 4677777643 2 25899999999999886332 1211111000122567777642 46777777777654
No 147
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=84.75 E-value=1.4 Score=27.43 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=23.9
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P 34 (77)
..|+.+||-.+. +-+||+..|+|++++.
T Consensus 198 ~~s~~VvtinSt-vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 198 EQSDAVVTINST-VGLEALLHGKPVIVFG 225 (269)
T ss_pred HhCCEEEEECCH-HHHHHHHcCCceEEec
Confidence 467888888776 7899999999999984
No 148
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=84.69 E-value=8.6 Score=25.29 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=39.7
Q ss_pred ChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 16 GIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 16 G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
|.||++-.+..|+|+++-.. ..--+.+.+.|+-+..+.+.++...+.++=+++.
T Consensus 239 giGnl~lLi~~G~~v~l~r~----n~fwqdl~e~gv~Vlf~~d~L~~~~v~e~~rql~ 292 (322)
T PRK02797 239 GIGTLCLLIQLGKPVVLSRD----NPFWQDLTEQGLPVLFTGDDLDEDIVREAQRQLA 292 (322)
T ss_pred HHhHHHHHHHCCCcEEEecC----CchHHHHHhCCCeEEecCCcccHHHHHHHHHHHH
Confidence 67999999999999998721 1112336677888888888888888887766543
No 149
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=84.35 E-value=1.2 Score=29.72 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=44.5
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCC-CChHHHHHHHHHhC--------ceeeeC----CCCCCHHHHHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGF-SDQHQNCKLMEEKG--------MGLITP----HETITGDILYITIREV 72 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~-~~q~~na~~~~~~g--------~g~~~~----~~~~~~~~l~~~i~~~ 72 (77)
..||+.+..+|.. +.|+...|+||++.=.. .=-...++++.+.. ++..+- .++++++.+.+++..+
T Consensus 263 ~~aD~al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~l 341 (381)
T COG0763 263 AAADAALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEEL 341 (381)
T ss_pred HHhhHHHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHH
Confidence 3578888889884 78999999999997221 12233444443332 111111 2457788999999888
Q ss_pred HcCC
Q psy14950 73 LNNP 76 (77)
Q Consensus 73 l~~~ 76 (77)
+.|+
T Consensus 342 l~~~ 345 (381)
T COG0763 342 LLNG 345 (381)
T ss_pred hcCh
Confidence 8764
No 150
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.83 E-value=9.5 Score=24.80 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=43.4
Q ss_pred CCccceEEecCCh-HHHHHHHHcCCCEEEe-CCCC---ChHHHHHHHHHhCceeeeCCCC----------CC-HHHHHHH
Q psy14950 5 HRNCKLFITHGGI-HSSMEAVYHGVPVVMM-PGFS---DQHQNCKLMEEKGMGLITPHET----------IT-GDILYIT 68 (77)
Q Consensus 5 ~~~~~~~i~h~G~-~t~~e~l~~g~P~i~~-P~~~---~q~~na~~~~~~g~g~~~~~~~----------~~-~~~l~~~ 68 (77)
..++|.+|+-+-+ +-..|+++.|+|+.++ |... .....-+.+++++++...+.+. ++ .+.+.+.
T Consensus 242 La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~~~~~~e~ysy~PLnEt~RiA~~ 321 (329)
T COG3660 242 LAAADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEGSNLALEEYSYKPLNETERIAEE 321 (329)
T ss_pred HhhcceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCcchhhhcccccCCchHHHHHHHH
Confidence 3567887777765 6677999999999887 3332 1223344556677777665421 22 3556666
Q ss_pred HHHHHc
Q psy14950 69 IREVLN 74 (77)
Q Consensus 69 i~~~l~ 74 (77)
|+..+.
T Consensus 322 Ira~l~ 327 (329)
T COG3660 322 IRAELG 327 (329)
T ss_pred HHHHhC
Confidence 665543
No 151
>PRK14098 glycogen synthase; Provisional
Probab=83.62 E-value=2.7 Score=28.66 Aligned_cols=64 Identities=23% Similarity=0.270 Sum_probs=37.2
Q ss_pred CccceEEecCC----hHHHHHHHHcCCCEEEeCCCC--ChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 6 RNCKLFITHGG----IHSSMEAVYHGVPVVMMPGFS--DQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 6 ~~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~--~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
..+|+++...= ..+.+|++++|+|.|+....+ |... ....+.+.|..++. .+.+++.+++.+++
T Consensus 380 a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~~~G~l~~~--~d~~~la~ai~~~l 449 (489)
T PRK14098 380 AGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDKGSGFIFHD--YTPEALVAKLGEAL 449 (489)
T ss_pred HhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCCCceeEeCC--CCHHHHHHHHHHHH
Confidence 45777775432 257889999999888764321 1110 00111356666653 34677777777654
No 152
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=83.01 E-value=12 Score=25.45 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=40.4
Q ss_pred CccceEEecC---C-hHHHHHHHHcCCC----EEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHG---G-IHSSMEAVYHGVP----VVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~---G-~~t~~e~l~~g~P----~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|+++.-+ | ..+..|++++|+| +|.--..+-.. .+ +-|..+++. +.+.+.+++.++++++
T Consensus 354 ~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~----~l---~~gllVnP~--d~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 354 RAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ----EL---NGALLVNPY--DIDGMADAIARALTMP 423 (456)
T ss_pred HhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH----Hh---CCcEEECCC--CHHHHHHHHHHHHcCC
Confidence 4577777643 4 3678899999999 55554333211 12 246677653 4788999998888754
No 153
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=82.64 E-value=6.9 Score=22.53 Aligned_cols=29 Identities=14% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCccceEEecCC-----hHHHHHH---HHcCCCEEEe
Q psy14950 5 HRNCKLFITHGG-----IHSSMEA---VYHGVPVVMM 33 (77)
Q Consensus 5 ~~~~~~~i~h~G-----~~t~~e~---l~~g~P~i~~ 33 (77)
..+||++|-+=| ||+.+.+ +..|+|.|++
T Consensus 70 i~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~l 106 (141)
T PF11071_consen 70 IEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITL 106 (141)
T ss_pred HhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 357888888888 6877765 6789999998
No 154
>KOG4626|consensus
Probab=82.17 E-value=1.5 Score=31.69 Aligned_cols=41 Identities=29% Similarity=0.585 Sum_probs=28.1
Q ss_pred ChHHHHHHHHcCCCEEEeCCCCChH-HHHHHHHHhCceeeeC
Q psy14950 16 GIHSSMEAVYHGVPVVMMPGFSDQH-QNCKLMEEKGMGLITP 56 (77)
Q Consensus 16 G~~t~~e~l~~g~P~i~~P~~~~q~-~na~~~~~~g~g~~~~ 56 (77)
|..|.++.++.|+|++.+|.-..-. .-+..+...|+|..+.
T Consensus 847 GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 847 GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 5668999999999999999633222 2233456667776554
No 155
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.51 E-value=2 Score=28.39 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=23.2
Q ss_pred HHHcCCCEEEeCCCCChHHH--HHHH-HHhCceeeeCC
Q psy14950 23 AVYHGVPVVMMPGFSDQHQN--CKLM-EEKGMGLITPH 57 (77)
Q Consensus 23 ~l~~g~P~i~~P~~~~q~~n--a~~~-~~~g~g~~~~~ 57 (77)
++-.|+|+|.+|-.+.|+.- |.+= .-+|+.+.+-.
T Consensus 326 avGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~ 363 (412)
T COG4370 326 AVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR 363 (412)
T ss_pred hhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC
Confidence 34569999999998888753 3332 23377766543
No 156
>PRK06270 homoserine dehydrogenase; Provisional
Probab=80.49 E-value=6.3 Score=25.73 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCCccceEEe------cCC---hHHHHHHHHcCCCEEEe---CCCCChHHHHHHHHHhCceeeeC
Q psy14950 3 TGHRNCKLFIT------HGG---IHSSMEAVYHGVPVVMM---PGFSDQHQNCKLMEEKGMGLITP 56 (77)
Q Consensus 3 l~~~~~~~~i~------h~G---~~t~~e~l~~g~P~i~~---P~~~~q~~na~~~~~~g~g~~~~ 56 (77)
|..+..|++|- |++ ..-+.+++.+|+++++. |.........+...+.|.....+
T Consensus 85 l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~e 150 (341)
T PRK06270 85 IRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYE 150 (341)
T ss_pred hhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence 44567787776 332 34457889999999994 65444444444455667766654
No 157
>PRK10125 putative glycosyl transferase; Provisional
Probab=80.22 E-value=2.5 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=29.9
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCC
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHE 58 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~ 58 (77)
.+|+||.-.= ..++.||+++|+|+|.-...+ -. +.+.. +.|..++..
T Consensus 306 ~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~---Eiv~~-~~G~lv~~~ 356 (405)
T PRK10125 306 QMDALVFSSRVDNYPLILCEALSIGVPVIATHSDA-AR---EVLQK-SGGKTVSEE 356 (405)
T ss_pred hCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCC-hH---HhEeC-CcEEEECCC
Confidence 4677776433 378999999999999986543 11 12222 356666653
No 158
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=79.84 E-value=4 Score=27.63 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=37.7
Q ss_pred CccceEEecC---C-hHHHHHHHHcCCC---EEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 6 RNCKLFITHG---G-IHSSMEAVYHGVP---VVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 6 ~~~~~~i~h~---G-~~t~~e~l~~g~P---~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
..+|+++.-+ | ..++.|++++|+| .+++......... ..-|..+++. +.+++.+++.+++.++
T Consensus 359 ~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~------~~~g~lv~p~--d~~~la~ai~~~l~~~ 428 (460)
T cd03788 359 RAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE------LSGALLVNPY--DIDEVADAIHRALTMP 428 (460)
T ss_pred HhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh------cCCCEEECCC--CHHHHHHHHHHHHcCC
Confidence 3567766432 3 3577899999999 3344322111111 1346666643 4788999999888754
No 159
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=79.56 E-value=3.5 Score=25.92 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCccceEEecCChHHHHHHHHc----CCCEEEeC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVYH----GVPVVMMP 34 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~~----g~P~i~~P 34 (77)
...+|++|+-||-||++.++.. ++|++.+.
T Consensus 23 ~~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 23 IEEADVIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred cccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 3467999999999999988764 68998884
No 160
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=76.95 E-value=12 Score=21.78 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=20.0
Q ss_pred ccceEEe-cCChHHHHH---HHHcCCCEEEeCCC
Q psy14950 7 NCKLFIT-HGGIHSSME---AVYHGVPVVMMPGF 36 (77)
Q Consensus 7 ~~~~~i~-h~G~~t~~e---~l~~g~P~i~~P~~ 36 (77)
.+|++|. -||.||+.| ++.+++|+++++..
T Consensus 91 ~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 91 SADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred HCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 3455444 456677664 57789999998643
No 161
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=76.88 E-value=23 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=22.7
Q ss_pred CccceEEecC---C-hHHHHHHHHcCCCEEEeCC
Q psy14950 6 RNCKLFITHG---G-IHSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~---G-~~t~~e~l~~g~P~i~~P~ 35 (77)
..||+++.-. | ..++.||+++|+|+|.-..
T Consensus 473 ~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~ 506 (590)
T cd03793 473 RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNL 506 (590)
T ss_pred hhceEEEeccccCCCCcHHHHHHHcCCCEEEccC
Confidence 4577777633 2 3589999999999999854
No 162
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=76.60 E-value=14 Score=26.23 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=30.6
Q ss_pred CccceEEec---CC-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCC
Q psy14950 6 RNCKLFITH---GG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 6 ~~~~~~i~h---~G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~ 57 (77)
..+|++|.. -| .+++.|++++|+|+|.-...+ +...+.+-..|..++.
T Consensus 471 aaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG----~~EiV~dG~nG~LVp~ 522 (578)
T PRK15490 471 QKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGG----SAECFIEGVSGFILDD 522 (578)
T ss_pred HhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCC----cHHHcccCCcEEEECC
Confidence 457888753 23 479999999999999874321 2233334445666554
No 163
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.81 E-value=19 Score=23.88 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=21.0
Q ss_pred ccceEEecCChHHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
.|+++|.-||.. ..||+..|+|.|.+
T Consensus 252 ya~lvig~ggTM-arEaAlLGtpaIs~ 277 (346)
T COG1817 252 YATLVIGAGGTM-AREAALLGTPAISC 277 (346)
T ss_pred hhheeecCCchH-HHHHHHhCCceEEe
Confidence 466788777663 67999999999998
No 164
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.43 E-value=16 Score=23.19 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.5
Q ss_pred CccceEEecCChHHHHHHHH----cCCCEEEeC
Q psy14950 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~----~g~P~i~~P 34 (77)
..+|++|+=||-||++.++. .++|++.+.
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN 64 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGIN 64 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEe
Confidence 45799999999999998875 478998885
No 165
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=75.26 E-value=9.2 Score=26.79 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=26.3
Q ss_pred CCccceEEecCChHHHHHHHHcCCCEEEeCCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS 37 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~ 37 (77)
...+|++|+.||....... ...+|+|-++...
T Consensus 62 ~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~ 93 (538)
T PRK15424 62 TERCDAIIAAGSNGAYLKS-RLSVPVILIKPSG 93 (538)
T ss_pred hCCCcEEEECchHHHHHHh-hCCCCEEEecCCH
Confidence 4578999999999888877 4579999997653
No 166
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=74.81 E-value=21 Score=24.99 Aligned_cols=32 Identities=13% Similarity=0.375 Sum_probs=25.8
Q ss_pred CCccceEEecCChHHHHHHHHcCCCEEEeCCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFS 37 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~ 37 (77)
...+|++|+.||....... ...+|+|-++...
T Consensus 52 ~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~ 83 (526)
T TIGR02329 52 AERCDVVVAGGSNGAYLKS-RLSLPVIVIKPTG 83 (526)
T ss_pred hCCCcEEEECchHHHHHHH-hCCCCEEEecCCh
Confidence 4578999999998888777 4479999997653
No 167
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.45 E-value=6 Score=25.52 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.9
Q ss_pred ccceEEecCChHHHHHHHHc----CCCEEEeCC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----GVPVVMMPG 35 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g~P~i~~P~ 35 (77)
.+|++|+-||-||+.+++.. ++|++.+..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 57999999999999999864 789988864
No 168
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=73.77 E-value=14 Score=23.91 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=34.0
Q ss_pred ccceE-EecCChHHHHHHHHcCCCEEEeCCCCChHH---HHHHHHHhCceeeeCC
Q psy14950 7 NCKLF-ITHGGIHSSMEAVYHGVPVVMMPGFSDQHQ---NCKLMEEKGMGLITPH 57 (77)
Q Consensus 7 ~~~~~-i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~---na~~~~~~g~g~~~~~ 57 (77)
.+|.+ ||--..+=+.||+..|+|+.++|....... ..+.+.+.|....++.
T Consensus 228 ~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~ 282 (311)
T PF06258_consen 228 AADAIVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTG 282 (311)
T ss_pred hCCEEEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCC
Confidence 45554 444455778899999999999976652122 3344667787777664
No 169
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=73.42 E-value=17 Score=21.76 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=34.6
Q ss_pred cceEEec---CCh-HHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 8 CKLFITH---GGI-HSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 8 ~~~~i~h---~G~-~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
+++++.. -|. .++.|+++.|+|+|.-... .....+.+.+.|...... +.+++.+++.+++++
T Consensus 277 ~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~~~g~~~~~~--~~~~~~~~i~~~~~~ 342 (381)
T COG0438 277 ADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDGETGLLVPPG--DVEELADALEQLLED 342 (381)
T ss_pred CCEEEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCCCceEecCCC--CHHHHHHHHHHHhcC
Confidence 4555544 233 4469999999999887542 112222222134433321 467777777777654
No 170
>PLN02949 transferase, transferring glycosyl groups
Probab=73.33 E-value=5.2 Score=27.23 Aligned_cols=65 Identities=14% Similarity=-0.003 Sum_probs=34.3
Q ss_pred ccceEEec---CC-hHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 7 NCKLFITH---GG-IHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 7 ~~~~~i~h---~G-~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
++++++.- =| ..++.|++++|+|.|.....+--......-..-..|...+ +.+++.+++.+++++
T Consensus 354 ~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~----~~~~la~ai~~ll~~ 422 (463)
T PLN02949 354 GAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT----TVEEYADAILEVLRM 422 (463)
T ss_pred hCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC----CHHHHHHHHHHHHhC
Confidence 45666632 12 2479999999999999753221000000000001232222 567888888887763
No 171
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=72.85 E-value=11 Score=22.53 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=25.7
Q ss_pred ccceEEec-CChHHHHHHHH---------cCCCEEEeC---CCCChHHHHHHHHHhC
Q psy14950 7 NCKLFITH-GGIHSSMEAVY---------HGVPVVMMP---GFSDQHQNCKLMEEKG 50 (77)
Q Consensus 7 ~~~~~i~h-~G~~t~~e~l~---------~g~P~i~~P---~~~~q~~na~~~~~~g 50 (77)
.+|+||.- ||.||+-|.+. +.+|++++- +|.+.....+.+.+.|
T Consensus 96 ~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~g 152 (178)
T TIGR00730 96 LADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEG 152 (178)
T ss_pred hCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCC
Confidence 46666655 45688887742 489999983 2322223334555555
No 172
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=71.86 E-value=14 Score=21.31 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCccceEEecCC-----hHHHHHH---HHcCCCEEEe
Q psy14950 5 HRNCKLFITHGG-----IHSSMEA---VYHGVPVVMM 33 (77)
Q Consensus 5 ~~~~~~~i~h~G-----~~t~~e~---l~~g~P~i~~ 33 (77)
..+||++|-.=| ||+.+.+ +..|+|.|++
T Consensus 73 i~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~l 109 (144)
T TIGR03646 73 IEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIIL 109 (144)
T ss_pred HhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 357888888888 6777765 6789999998
No 173
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.54 E-value=3 Score=29.55 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=25.4
Q ss_pred CccceEEe---cCChHHHHHHHHcCCCEEEeCCCCChH
Q psy14950 6 RNCKLFIT---HGGIHSSMEAVYHGVPVVMMPGFSDQH 40 (77)
Q Consensus 6 ~~~~~~i~---h~G~~t~~e~l~~g~P~i~~P~~~~q~ 40 (77)
.-+|+|+. .+|..|..|++.+|+|++..+ ++|+
T Consensus 507 ~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 507 GIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred chhheeeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 34566554 578889999999999999995 5555
No 174
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=71.08 E-value=5.1 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=26.1
Q ss_pred CCCccceEEecCChHHHHHHHHcCCCEEEe
Q psy14950 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 4 ~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
...+-|++|+.+++.+..-+-..|+|.+.+
T Consensus 90 ~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i 119 (321)
T TIGR00661 90 REYNPDLIISDFEYSTVVAAKLLKIPVICI 119 (321)
T ss_pred HhcCCCEEEECCchHHHHHHHhcCCCEEEE
Confidence 345679999999999999999999999976
No 175
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=70.53 E-value=5.5 Score=25.99 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.9
Q ss_pred CCCCccceEEecCChHH---HHHHHHcCCCEEEe
Q psy14950 3 TGHRNCKLFITHGGIHS---SMEAVYHGVPVVMM 33 (77)
Q Consensus 3 l~~~~~~~~i~h~G~~t---~~e~l~~g~P~i~~ 33 (77)
+...+-|+++++||+-+ ..-+...++|.++.
T Consensus 87 ~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 87 IRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 34567789999999975 88888999999886
No 176
>PRK14099 glycogen synthase; Provisional
Probab=69.21 E-value=14 Score=25.32 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=35.4
Q ss_pred ccceEEecCC----hHHHHHHHHcCCCEEEeCCCC--ChHHHHHH-HHH--hCceeeeCCCCCCHHHHHHHHHH
Q psy14950 7 NCKLFITHGG----IHSSMEAVYHGVPVVMMPGFS--DQHQNCKL-MEE--KGMGLITPHETITGDILYITIRE 71 (77)
Q Consensus 7 ~~~~~i~h~G----~~t~~e~l~~g~P~i~~P~~~--~q~~na~~-~~~--~g~g~~~~~~~~~~~~l~~~i~~ 71 (77)
.+|+++.-.= ..+.+||+++|+|.|+-...+ |....... .+. .+.|..++.. +.+++.+++.+
T Consensus 369 ~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~--d~~~La~ai~~ 440 (485)
T PRK14099 369 GADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPV--TADALAAALRK 440 (485)
T ss_pred cCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCC--CHHHHHHHHHH
Confidence 5788776432 357899999997666653211 21111100 011 1457777643 47788888876
No 177
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=69.06 E-value=2.7 Score=27.03 Aligned_cols=45 Identities=18% Similarity=0.077 Sum_probs=33.9
Q ss_pred cceEEecCChHHHHHH--HHcCCCEEEeCCCCChHHHHHH-HHHhCce
Q psy14950 8 CKLFITHGGIHSSMEA--VYHGVPVVMMPGFSDQHQNCKL-MEEKGMG 52 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~--l~~g~P~i~~P~~~~q~~na~~-~~~~g~g 52 (77)
..+.=--||||+++-- -.+|+-++.+....+|...++. +.+.|+.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 3333445788776643 3458999999999999999987 6778887
No 178
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=68.89 E-value=33 Score=23.22 Aligned_cols=64 Identities=23% Similarity=0.432 Sum_probs=40.1
Q ss_pred ccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCce-eeeCCCCCCHHHHHHHHHHHHc
Q psy14950 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMG-LITPHETITGDILYITIREVLN 74 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g-~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
.|+++|.-= +.+..=++..|+|.|.+-+ +......+++.|+- ..++...++.+.+...+.+.+.
T Consensus 285 ~~dl~Vg~R-~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 285 ACDLIVGMR-LHSAIMALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLT 349 (385)
T ss_pred cCceEEeeh-hHHHHHHHhcCCCeEEEee---cHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHh
Confidence 445544321 3456678889999999943 34445666777764 4455556777777777665543
No 179
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=67.77 E-value=4.1 Score=26.37 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=35.4
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHH----HHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKL----MEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~----~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
..+|++||=-.+ .+.|.+..++|+|......++....+- ..+...|..+. +.++|.++|.+++.
T Consensus 268 ~~aDiLITDySS-i~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~~~~~ 335 (369)
T PF04464_consen 268 AAADILITDYSS-IIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY----NFEELIEAIENIIE 335 (369)
T ss_dssp HT-SEEEESS-T-HHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES----SHHHHHHHHTTHHH
T ss_pred HhcCEEEEechh-HHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC----CHHHHHHHHHhhhh
Confidence 368899998865 799999999999987544443311110 11222333332 46788877776553
No 180
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=67.51 E-value=21 Score=22.54 Aligned_cols=63 Identities=13% Similarity=0.001 Sum_probs=38.3
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe--CCCCChHHHHHHHHHhCceeee--CCCCCCHHHHHHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM--PGFSDQHQNCKLMEEKGMGLIT--PHETITGDILYITIREVL 73 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~--P~~~~q~~na~~~~~~g~g~~~--~~~~~~~~~l~~~i~~~l 73 (77)
..|+++|+.-.. ...=|.+.|+|.+.+ |....+. .- -.....+.. ..++++++++.+++++++
T Consensus 253 ~~a~l~I~~DSg-p~HlAaa~g~P~i~lfg~t~p~~~--~P--~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADAVVGVDTG-LTHLAAALDKPTVTLYGATDPGRT--GG--YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCEEEeCCCh-HHHHHHHcCCCEEEEECCCCHhhc--cc--CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 468899998765 466778889999987 4321110 00 000111111 135788999999998764
No 181
>PF14350 Beta_protein: Beta protein
Probab=65.95 E-value=11 Score=24.56 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=25.8
Q ss_pred CEEEeCCCCChHHHHHHHH---HhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 29 PVVMMPGFSDQHQNCKLME---EKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 29 P~i~~P~~~~q~~na~~~~---~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
|++.+....+.......+. ..|+++++...++..+++...+.+++.
T Consensus 99 PVi~l~~~~~~~~~v~~~~~~~~~~iaiRl~~~~~~~~~~~~~i~~i~~ 147 (347)
T PF14350_consen 99 PVIGLDRSDDYLRAVRSIARRNGGGIAIRLRPDDLDDDDFPSEISRILA 147 (347)
T ss_pred EEEecCCcHHHHHHHHHHHHhcCCeEEEEeecccccchhHHHHHHHHHH
Confidence 5555543333233333333 447888888877766666666666653
No 182
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=64.10 E-value=11 Score=23.89 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=25.5
Q ss_pred CCccceEEecCChHHHHHHHHc----CCCEEEeCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVYH----GVPVVMMPG 35 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~~----g~P~i~~P~ 35 (77)
...+|++|+-||-||+..+... ++|++.++.
T Consensus 74 ~~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp CCCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred ccCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 3678999999999999999763 679999864
No 183
>PRK13057 putative lipid kinase; Reviewed
Probab=63.64 E-value=14 Score=23.24 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=24.3
Q ss_pred CccceEEecCChHHHHHHHH----cCCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~----~g~P~i~~P~ 35 (77)
+..|.+|.-||=||+.|.+. .+.|+-++|.
T Consensus 49 ~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCEEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 45689999999999988863 4688888895
No 184
>PRK13840 sucrose phosphorylase; Provisional
Probab=63.59 E-value=13 Score=25.83 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=33.3
Q ss_pred cCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHH
Q psy14950 26 HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITI 69 (77)
Q Consensus 26 ~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i 69 (77)
.|+|+|......-....-.++++.|-++.+++..++.+++.+.+
T Consensus 371 ~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l 414 (495)
T PRK13840 371 PGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEAL 414 (495)
T ss_pred CCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHH
Confidence 49999998655555555667777899999999888877777665
No 185
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=63.25 E-value=49 Score=23.14 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=46.0
Q ss_pred CCccceEEecCC---------h-----HHHHHHHHcCCCEEEe-----CCCCChHHHHHHH-HHhCce-eeeCCCCCCHH
Q psy14950 5 HRNCKLFITHGG---------I-----HSSMEAVYHGVPVVMM-----PGFSDQHQNCKLM-EEKGMG-LITPHETITGD 63 (77)
Q Consensus 5 ~~~~~~~i~h~G---------~-----~t~~e~l~~g~P~i~~-----P~~~~q~~na~~~-~~~g~g-~~~~~~~~~~~ 63 (77)
|....++|+-.| + ..+.|.-..++|++++ |...+....+..+ +++++- +.++-..++.+
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~ 223 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRES 223 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHH
Confidence 666777888555 2 3445556679999998 4333433344445 455755 45565678889
Q ss_pred HHHHHHHHHHc
Q psy14950 64 ILYITIREVLN 74 (77)
Q Consensus 64 ~l~~~i~~~l~ 74 (77)
++.+.++++|-
T Consensus 224 DI~~il~~vL~ 234 (492)
T TIGR02836 224 DILSVLEEVLY 234 (492)
T ss_pred HHHHHHHHHHh
Confidence 99999888874
No 186
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=63.12 E-value=12 Score=22.13 Aligned_cols=29 Identities=7% Similarity=0.289 Sum_probs=17.7
Q ss_pred HHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 41 QNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 41 ~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
+.+.+-.+.|+|+.+. ++++.++|.+.+.
T Consensus 103 d~~~Fe~~cGVGV~VT-----~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 103 DVAEFEKACGVGVVVT-----PEQIEAAVEKYIE 131 (164)
T ss_dssp -HHHHHHTTTTT---------HHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCeEEC-----HHHHHHHHHHHHH
Confidence 3444445669999886 7899999888775
No 187
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=62.18 E-value=37 Score=22.74 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=24.4
Q ss_pred CccceEEecCChHHHHHHHHc---CCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYH---GVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~---g~P~i~~P~ 35 (77)
..+|+++.-||-||.-..+.. .+|++.+|.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~~~vPvLGipa 131 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVGADVPVLGIPA 131 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhccCCCceEeecc
Confidence 358999999998887666554 899999995
No 188
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=61.92 E-value=26 Score=19.61 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=23.0
Q ss_pred cceE-EecCChHHHHHHHHc----------CCCEEEeC---CCCChHHHHHHHHHhC
Q psy14950 8 CKLF-ITHGGIHSSMEAVYH----------GVPVVMMP---GFSDQHQNCKLMEEKG 50 (77)
Q Consensus 8 ~~~~-i~h~G~~t~~e~l~~----------g~P~i~~P---~~~~q~~na~~~~~~g 50 (77)
+|+| +-.||.||..|.... .+|++.+- +|.+-....+++.+.|
T Consensus 54 sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g 110 (133)
T PF03641_consen 54 SDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEG 110 (133)
T ss_dssp ESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCC
Confidence 4554 456667998887532 44999983 2333333333445444
No 189
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=61.43 E-value=14 Score=26.20 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=42.2
Q ss_pred ccceEEecCC---hHHHHHHHHcCCCEEEe----CCC------CC-----hHHHHH--HHH-HhCceeeeCCCCCCHHHH
Q psy14950 7 NCKLFITHGG---IHSSMEAVYHGVPVVMM----PGF------SD-----QHQNCK--LME-EKGMGLITPHETITGDIL 65 (77)
Q Consensus 7 ~~~~~i~h~G---~~t~~e~l~~g~P~i~~----P~~------~~-----q~~na~--~~~-~~g~g~~~~~~~~~~~~l 65 (77)
++++||-=|. .-+.+||+++|+|+|-- |.. +. ....++ +++ ..|---+.+.+.-+.+++
T Consensus 341 ~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v 420 (559)
T PF15024_consen 341 KAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEV 420 (559)
T ss_pred hhhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHH
Confidence 4455555544 25789999999999875 211 01 011222 344 245444544444568999
Q ss_pred HHHHHHHHcCC
Q psy14950 66 YITIREVLNNP 76 (77)
Q Consensus 66 ~~~i~~~l~~~ 76 (77)
.++|++++..+
T Consensus 421 ~~Avk~il~~~ 431 (559)
T PF15024_consen 421 EAAVKAILATP 431 (559)
T ss_pred HHHHHHHHhcC
Confidence 99999998764
No 190
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=61.35 E-value=33 Score=20.49 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=24.9
Q ss_pred HHHcCCCEEEeCCC----CChHHHHHHHHHhCceeeeC
Q psy14950 23 AVYHGVPVVMMPGF----SDQHQNCKLMEEKGMGLITP 56 (77)
Q Consensus 23 ~l~~g~P~i~~P~~----~~q~~na~~~~~~g~g~~~~ 56 (77)
++..++|++++|.. .-+..|...+.+.|.-+.-.
T Consensus 108 ~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P 145 (181)
T TIGR00421 108 CLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPP 145 (181)
T ss_pred HHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECC
Confidence 56789999999853 12457788888888876543
No 191
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=61.29 E-value=44 Score=24.67 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=39.2
Q ss_pred CccceEEecC---Ch-HHHHHHHHcCCC---EEEeCCCCChHHHHHHHHHhC-ceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 6 RNCKLFITHG---GI-HSSMEAVYHGVP---VVMMPGFSDQHQNCKLMEEKG-MGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 6 ~~~~~~i~h~---G~-~t~~e~l~~g~P---~i~~P~~~~q~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
..+|+++.-+ |. .+.+|++++|.| .++++.+.-- +.. .| -|+.+++. +.+.+.+++.+++.
T Consensus 374 ~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~---~~~---l~~~allVnP~--D~~~lA~AI~~aL~ 442 (797)
T PLN03063 374 AITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA---GQS---LGAGALLVNPW--NITEVSSAIKEALN 442 (797)
T ss_pred HhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCc---hhh---hcCCeEEECCC--CHHHHHHHHHHHHh
Confidence 3567777654 54 577799999999 5555433211 111 23 57777764 46888889888876
No 192
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=60.72 E-value=13 Score=23.56 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCEEEeCCCCChHHHHHHHHHhCceeeeCC
Q psy14950 27 GVPVVMMPGFSDQHQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 27 g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~ 57 (77)
+--+.++|+..|-...|+++++.|+..++..
T Consensus 128 ~eGF~VlPY~~dD~v~arrLee~GcaavMPl 158 (262)
T COG2022 128 KEGFVVLPYTTDDPVLARRLEEAGCAAVMPL 158 (262)
T ss_pred hCCCEEeeccCCCHHHHHHHHhcCceEeccc
Confidence 4567888999999999999999999988875
No 193
>PRK11914 diacylglycerol kinase; Reviewed
Probab=59.89 E-value=15 Score=23.33 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=24.6
Q ss_pred CccceEEecCChHHHHHHHH----cCCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~----~g~P~i~~P~ 35 (77)
...|.+|.-||=||+.|.+. .++|+-++|.
T Consensus 63 ~~~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 63 KGTDALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred cCCCEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 45689999999999998873 4788888895
No 194
>PLN02316 synthase/transferase
Probab=59.79 E-value=72 Score=24.58 Aligned_cols=69 Identities=7% Similarity=0.006 Sum_probs=40.1
Q ss_pred CCccceEEecC----ChHHHHHHHHcCCCEEEeCCCC--ChHHHH----HHHHH---hCceeeeCCCCCCHHHHHHHHHH
Q psy14950 5 HRNCKLFITHG----GIHSSMEAVYHGVPVVMMPGFS--DQHQNC----KLMEE---KGMGLITPHETITGDILYITIRE 71 (77)
Q Consensus 5 ~~~~~~~i~h~----G~~t~~e~l~~g~P~i~~P~~~--~q~~na----~~~~~---~g~g~~~~~~~~~~~~l~~~i~~ 71 (77)
...+|+|+... =..+.+||+++|+|.|+-...+ |..... ..... -+-|..++. .+.+.+..+|.+
T Consensus 917 yaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~--~d~~aLa~AL~r 994 (1036)
T PLN02316 917 YAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDG--ADAAGVDYALNR 994 (1036)
T ss_pred HHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCC--CCHHHHHHHHHH
Confidence 35677877543 1358999999999888764322 211111 00011 245777763 346777888877
Q ss_pred HHcC
Q psy14950 72 VLNN 75 (77)
Q Consensus 72 ~l~~ 75 (77)
++.+
T Consensus 995 aL~~ 998 (1036)
T PLN02316 995 AISA 998 (1036)
T ss_pred HHhh
Confidence 7653
No 195
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=59.58 E-value=8.3 Score=23.60 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=17.7
Q ss_pred ccceEEecCChHHHHHHHHcCCC
Q psy14950 7 NCKLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~g~P 29 (77)
..-++|+|||...+.-+...|.|
T Consensus 175 ~~vlvVsHg~vir~ll~~~~~~~ 197 (228)
T PRK14116 175 KNVIIAAHGNSLRALTKYIENIS 197 (228)
T ss_pred CeEEEEcChHHHHHHHHHHhCCC
Confidence 34579999998877777777766
No 196
>KOG0853|consensus
Probab=58.78 E-value=4.7 Score=27.97 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCCEEEe
Q psy14950 18 HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~ 33 (77)
-+..||+.+|+|++..
T Consensus 380 iv~IEAMa~glPvvAt 395 (495)
T KOG0853|consen 380 IVPIEAMACGLPVVAT 395 (495)
T ss_pred ceeHHHHhcCCCEEEe
Confidence 4789999999999987
No 197
>PRK13059 putative lipid kinase; Reviewed
Probab=58.59 E-value=15 Score=23.31 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=23.7
Q ss_pred CccceEEecCChHHHHHHHH------cCCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVY------HGVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~------~g~P~i~~P~ 35 (77)
...|.+|.-||=||+.|.+. .++|+-++|.
T Consensus 55 ~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 55 ESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 45689999999999888752 2578888895
No 198
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=58.17 E-value=21 Score=21.16 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=29.7
Q ss_pred cCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHH
Q psy14950 26 HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (77)
Q Consensus 26 ~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 72 (77)
.|+|.--+=++.|+..|..-+.++|+--+.-++.++.+.+.+.+++.
T Consensus 120 tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~~ 166 (169)
T PF12689_consen 120 TGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEKF 166 (169)
T ss_dssp H---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHHH
T ss_pred cCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHHH
Confidence 45554333345799999999888998877777789999999988764
No 199
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=57.96 E-value=60 Score=22.44 Aligned_cols=59 Identities=12% Similarity=-0.034 Sum_probs=43.9
Q ss_pred cCChHHHHHHHHcCCCEEEeCCC--CChHHHHHHHHHhC-ceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 14 HGGIHSSMEAVYHGVPVVMMPGF--SDQHQNCKLMEEKG-MGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 14 h~G~~t~~e~l~~g~P~i~~P~~--~~q~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
.-|...+.+.+-...|++.-|+. .--...+..+.+.| +|. +....++.+++++.|+++-
T Consensus 5 ~lg~~~f~~~lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~-lgag~l~~e~l~~~I~~ir 66 (444)
T TIGR02814 5 SLGSAAFREDYGVRYAYVAGAMANGIASAELVIAMGRAGILGF-FGAGGLPLEEVEQAIHRIQ 66 (444)
T ss_pred hcCChHHHHHhCCCCcEECccccCCCCCHHHHHHHHhCCceee-eCCCCCCHHHHHHHHHHHH
Confidence 45778888998889999999985 45566777777774 454 4444678999998888763
No 200
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=57.21 E-value=35 Score=22.81 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=28.3
Q ss_pred EEecC--------ChHHHH----HHHHcCCCEEEe-----CCCCChHHHHHHHHHhCceeeeC
Q psy14950 11 FITHG--------GIHSSM----EAVYHGVPVVMM-----PGFSDQHQNCKLMEEKGMGLITP 56 (77)
Q Consensus 11 ~i~h~--------G~~t~~----e~l~~g~P~i~~-----P~~~~q~~na~~~~~~g~g~~~~ 56 (77)
++||| |+||.. ++...|+.+-++ |...-....+..+.+.|+-+.+=
T Consensus 163 ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI 225 (356)
T PRK08334 163 VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLI 225 (356)
T ss_pred EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEE
Confidence 89999 677754 445568876654 32222334566777778765543
No 201
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=57.14 E-value=15 Score=21.89 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=16.6
Q ss_pred ceEEecCChHHHHHHHHcCCCE
Q psy14950 9 KLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 9 ~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
-++|+|||....+=+...|.|.
T Consensus 147 vliVsHg~~ir~ll~~~lg~~~ 168 (204)
T TIGR03848 147 WVACSHGDVIKSVLADALGMHL 168 (204)
T ss_pred EEEEeCChHHHHHHHHHhCCCH
Confidence 3699999987776666677665
No 202
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=56.87 E-value=14 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=20.5
Q ss_pred ceEEecCChHHHH--HHHHcCCCEEEeC
Q psy14950 9 KLFITHGGIHSSM--EAVYHGVPVVMMP 34 (77)
Q Consensus 9 ~~~i~h~G~~t~~--e~l~~g~P~i~~P 34 (77)
|++|.|+|||-.+ .-+....|+|...
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 8999999997443 4567799999875
No 203
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=56.23 E-value=30 Score=20.21 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=21.0
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.++|- +.+.++...+.|+|++.
T Consensus 60 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 60 RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 44567777774 45668899999999993
No 204
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=56.15 E-value=11 Score=22.95 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=16.9
Q ss_pred cceEEecCChHHHHHHHHcCCC
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P 29 (77)
.=++|+|||.....-+...|.|
T Consensus 176 ~vlvVsHg~vir~l~~~~~~~~ 197 (228)
T PRK14119 176 TVLVSAHGNSIRALIKYLEDVS 197 (228)
T ss_pred eEEEEeChHHHHHHHHHHhCCC
Confidence 3479999998777777777766
No 205
>PRK13463 phosphatase PhoE; Provisional
Probab=55.62 E-value=12 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=17.5
Q ss_pred cceEEecCChHHHHHHHHcCCCE
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
.-++|+|||.....-+-..|.|.
T Consensus 145 ~vlvVsHg~~ir~~~~~~~~~~~ 167 (203)
T PRK13463 145 SILIVSHAAAAKLLVGHFAGIEI 167 (203)
T ss_pred EEEEEeChHHHHHHHHHHhCCCH
Confidence 34789999988777777777664
No 206
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=55.40 E-value=18 Score=23.21 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCCEEEeCCCCChHHHHHHHHHhCceeeeCC
Q psy14950 27 GVPVVMMPGFSDQHQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 27 g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~ 57 (77)
.--+.++|+..+-...|+++++.|+..++..
T Consensus 135 ~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPl 165 (267)
T CHL00162 135 KKGFTVLPYINADPMLAKHLEDIGCATVMPL 165 (267)
T ss_pred HCCCEEeecCCCCHHHHHHHHHcCCeEEeec
Confidence 4456788888999999999999999888765
No 207
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=54.41 E-value=19 Score=19.84 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=22.4
Q ss_pred ccceEEecCChHHHHHHHHc----C-----CCEEEeCC
Q psy14950 7 NCKLFITHGGIHSSMEAVYH----G-----VPVVMMPG 35 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~----g-----~P~i~~P~ 35 (77)
..|.+|.-||-||+.|.+.. . .|+.++|.
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 45689999999999988642 3 67788886
No 208
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=54.26 E-value=28 Score=22.12 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=21.2
Q ss_pred CCCEEEeCCCCChHHHHHHHHHhCceeeeCC
Q psy14950 27 GVPVVMMPGFSDQHQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 27 g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~ 57 (77)
..-+.++|+..+-...|+++++.|+..++..
T Consensus 121 ~eGF~VlPY~~~D~v~akrL~d~GcaavMPl 151 (247)
T PF05690_consen 121 KEGFVVLPYCTDDPVLAKRLEDAGCAAVMPL 151 (247)
T ss_dssp HTT-EEEEEE-S-HHHHHHHHHTT-SEBEEB
T ss_pred HCCCEEeecCCCCHHHHHHHHHCCCCEEEec
Confidence 3445677777888899999999999887754
No 209
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=53.76 E-value=60 Score=21.20 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=31.9
Q ss_pred EecCChHHHHHHHHcCCCEEEe-CCCCChHHHHHHHHHhCce
Q psy14950 12 ITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLMEEKGMG 52 (77)
Q Consensus 12 i~h~G~~t~~e~l~~g~P~i~~-P~~~~q~~na~~~~~~g~g 52 (77)
+.--|.-.+.|++..|.|+|.+ |++..-..-+..+.+++..
T Consensus 107 ~~v~g~e~l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~ 148 (308)
T COG1560 107 VEVEGLEHLEEALANGRGVILVTPHFGNWELGGRALAQQGPK 148 (308)
T ss_pred eeecCHHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCC
Confidence 4445777889999999999887 8777777777777777655
No 210
>PRK13054 lipid kinase; Reviewed
Probab=53.51 E-value=23 Score=22.47 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=23.6
Q ss_pred CccceEEecCChHHHHHHHHc------C--CCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYH------G--VPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~------g--~P~i~~P~ 35 (77)
...|.+|.-||=||+.|.+.. + .|+-++|.
T Consensus 55 ~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 55 LGVATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 457899999999999988753 2 47777885
No 211
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=53.48 E-value=13 Score=21.38 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=15.9
Q ss_pred ceEEecCChHHHHHHHHcCCC
Q psy14950 9 KLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 9 ~~~i~h~G~~t~~e~l~~g~P 29 (77)
=++|+|||....+-+...|.|
T Consensus 140 vlvVsHg~~i~~l~~~~~~~~ 160 (177)
T TIGR03162 140 VLIVTHGGVIRALLAHLLGLP 160 (177)
T ss_pred EEEEECHHHHHHHHHHHhCCC
Confidence 468999998777766666765
No 212
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=52.84 E-value=30 Score=24.96 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=28.3
Q ss_pred ChHHHHHHHHcCCCEEEeCCCC-ChHHHHH--HHHHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 16 GIHSSMEAVYHGVPVVMMPGFS-DQHQNCK--LMEEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 16 G~~t~~e~l~~g~P~i~~P~~~-~q~~na~--~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
|+ |..|+.++|+|.|.--..+ -+..+-. .-...|+-++-+ .+.+.++..+.+.+.|
T Consensus 483 GY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR-~~~n~~e~v~~la~~l 541 (633)
T PF05693_consen 483 GY-TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDR-RDKNYDESVNQLADFL 541 (633)
T ss_dssp -H-HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-S-SSS-HHHHHHHHHHHH
T ss_pred cC-ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeC-CCCCHHHHHHHHHHHH
Confidence 55 8999999999999975431 1111110 112345555444 4556666666655543
No 213
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=52.74 E-value=6.1 Score=19.79 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=13.2
Q ss_pred CCCCCccceEEecCChH
Q psy14950 2 PTGHRNCKLFITHGGIH 18 (77)
Q Consensus 2 ~l~~~~~~~~i~h~G~~ 18 (77)
+|+.+.-.++||+.|.|
T Consensus 30 ~LsNg~y~~mvt~~G~G 46 (66)
T PF06204_consen 30 VLSNGSYGVMVTNSGSG 46 (66)
T ss_dssp EE-SSSEEEEEETTSBE
T ss_pred EeeCCcEEEEEcCCCce
Confidence 46778888999999875
No 214
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=52.32 E-value=13 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=16.4
Q ss_pred cceEEecCChHHHHHHHHcCCCE
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
.-++|+|||...++-+...|.|.
T Consensus 175 ~vlvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 175 RVLVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred eEEEEeCHHHHHHHHHHHhCCCH
Confidence 34799999987666666667653
No 215
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=52.10 E-value=25 Score=22.08 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=21.9
Q ss_pred CccceEEecCChHHHHHHHHc-----CCCEEE-eCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYH-----GVPVVM-MPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~-----g~P~i~-~P~ 35 (77)
...|.+|.-||=||+.|++.. ..|.+. +|.
T Consensus 56 ~~~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 56 FGVDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred cCCCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 346899999999999997642 345554 785
No 216
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=51.79 E-value=14 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=16.5
Q ss_pred cceEEecCChHHHHHHHHcCCC
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P 29 (77)
.-++|+|||...++=+...|.|
T Consensus 176 ~vlvVsHg~~ir~ll~~~lg~~ 197 (230)
T PRK14117 176 NVFVGAHGNSIRALVKHIKGLS 197 (230)
T ss_pred EEEEEeChHHHHHHHHHHhCcC
Confidence 3479999998777766666765
No 217
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=51.65 E-value=39 Score=19.62 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=20.6
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++++.|. +.+.++...++|+|++.
T Consensus 63 ~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 63 KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34556676663 45678889999999994
No 218
>PRK05920 aromatic acid decarboxylase; Validated
Probab=51.51 E-value=44 Score=20.46 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=23.9
Q ss_pred HHHHcCCCEEEeCCC-CCh---HHHHHHHHHhCceee
Q psy14950 22 EAVYHGVPVVMMPGF-SDQ---HQNCKLMEEKGMGLI 54 (77)
Q Consensus 22 e~l~~g~P~i~~P~~-~~q---~~na~~~~~~g~g~~ 54 (77)
+++..+.|++++|.. ... ..|...+.+.|.-+.
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii 161 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIIL 161 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEe
Confidence 456789999999963 222 467788888887764
No 219
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=51.22 E-value=36 Score=22.10 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=24.5
Q ss_pred CCccceEEecCChHHHHHHHH----cCCCEEEeCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVY----HGVPVVMMPG 35 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~----~g~P~i~~P~ 35 (77)
.-..|.+|.=||.+|...+.. .++|++.+|-
T Consensus 89 ~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPk 123 (301)
T TIGR02482 89 KLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPG 123 (301)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecc
Confidence 346788999999988866643 6899999995
No 220
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=51.05 E-value=15 Score=21.83 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=17.3
Q ss_pred cceEEecCChHHHHHHHHcCCCE
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
.-++|+|||....+-+...|.|.
T Consensus 143 ~iliVsHg~~i~~l~~~~~~~~~ 165 (199)
T PRK15004 143 NLLIVSHQGVLSLLIARLLGMPA 165 (199)
T ss_pred eEEEEcChHHHHHHHHHHhCCCH
Confidence 35799999987777777777664
No 221
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=50.43 E-value=20 Score=23.12 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=18.1
Q ss_pred cceEEecCChHHHHHHHHcCCCE
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
.-++|+|||....+-+...|.|.
T Consensus 234 ~vLVVsHGgvIR~ll~~lLglp~ 256 (299)
T PTZ00122 234 VEIIVCHGNVIRYLVCRALQLPP 256 (299)
T ss_pred eEEEEeCChHHHHHHHHHhCcCH
Confidence 34899999998887777777664
No 222
>PLN02939 transferase, transferring glycosyl groups
Probab=50.36 E-value=73 Score=24.40 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=38.2
Q ss_pred CccceEEecC----ChHHHHHHHHcCCCEEEeCCCC--ChHHH--HHHH-HHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 6 RNCKLFITHG----GIHSSMEAVYHGVPVVMMPGFS--DQHQN--CKLM-EEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 6 ~~~~~~i~h~----G~~t~~e~l~~g~P~i~~P~~~--~q~~n--a~~~-~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
..+|+|+... -..+.+||+++|+|.|+....+ |...+ .... ..-+-|..+.. .+.+.+.+++.+++
T Consensus 855 AaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~--~D~eaLa~AL~rAL 929 (977)
T PLN02939 855 AASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT--PDEQGLNSALERAF 929 (977)
T ss_pred HhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC--CCHHHHHHHHHHHH
Confidence 4678877643 1358999999999998764332 21111 0111 11245666654 25677777776654
No 223
>PRK03482 phosphoglycerate mutase; Provisional
Probab=50.05 E-value=17 Score=21.77 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.0
Q ss_pred ceEEecCChHHHHHHHHcCCCE
Q psy14950 9 KLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 9 ~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
-++|+|||....+-+...|.|.
T Consensus 145 vliVsHg~~i~~l~~~l~~~~~ 166 (215)
T PRK03482 145 PLLVSHGIALGCLVSTILGLPA 166 (215)
T ss_pred EEEEeCcHHHHHHHHHHhCCCh
Confidence 4799999887777777777664
No 224
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=48.79 E-value=69 Score=20.42 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=23.7
Q ss_pred CccceEEecCChHHHHHHHHc----CCCEEEeC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYH----GVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~----g~P~i~~P 34 (77)
..+++++.=||-||+..+... ++|++.+-
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin 86 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARLDIPVLGIN 86 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccCCCCEEEEe
Confidence 468999999999999988764 56888873
No 225
>PRK03202 6-phosphofructokinase; Provisional
Probab=48.59 E-value=37 Score=22.25 Aligned_cols=31 Identities=35% Similarity=0.580 Sum_probs=24.9
Q ss_pred CCccceEEecCChHHHHHHHH---cCCCEEEeCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVY---HGVPVVMMPG 35 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~---~g~P~i~~P~ 35 (77)
.-..|.+|.=||.+|..-+.. .++|++.+|-
T Consensus 91 ~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPk 124 (320)
T PRK03202 91 KLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPG 124 (320)
T ss_pred HcCCCEEEEeCChHHHHHHHHHHhcCCcEEEecc
Confidence 346788999999988876644 5999999995
No 226
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=48.54 E-value=43 Score=19.88 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=21.7
Q ss_pred ccceEEecCC----------------hHHHHHHHHcCCCEEEeCCC
Q psy14950 7 NCKLFITHGG----------------IHSSMEAVYHGVPVVMMPGF 36 (77)
Q Consensus 7 ~~~~~i~h~G----------------~~t~~e~l~~g~P~i~~P~~ 36 (77)
..+.+|-.|| ......+...++|++.++..
T Consensus 63 ~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 63 NADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred cCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 4566777777 44556667789999998654
No 227
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=47.67 E-value=33 Score=23.77 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=32.6
Q ss_pred cCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHH
Q psy14950 26 HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIR 70 (77)
Q Consensus 26 ~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~ 70 (77)
.|+|+|...-..--..+-..+++.|.+..++....+.+++...+.
T Consensus 361 pGiP~iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~ 405 (470)
T TIGR03852 361 PGIPQVYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVK 405 (470)
T ss_pred CCCceEEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHh
Confidence 499999875443344556667778888889988888887776653
No 228
>KOG0257|consensus
Probab=47.63 E-value=83 Score=21.66 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=42.3
Q ss_pred CCCCccceEEecCChHHHHHHH----HcCCCEEEe-CCCCChHHHHHHHHHhCceeeeCC-------C--CCCHHHHHHH
Q psy14950 3 TGHRNCKLFITHGGIHSSMEAV----YHGVPVVMM-PGFSDQHQNCKLMEEKGMGLITPH-------E--TITGDILYIT 68 (77)
Q Consensus 3 l~~~~~~~~i~h~G~~t~~e~l----~~g~P~i~~-P~~~~q~~na~~~~~~g~g~~~~~-------~--~~~~~~l~~~ 68 (77)
+..|..+++||-|....++.++ ..|.-+|+. |.+.-...+..++-..+..+.+.. . .++.+++..+
T Consensus 89 ~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~ 168 (420)
T KOG0257|consen 89 LLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESK 168 (420)
T ss_pred ccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhh
Confidence 4567788999999988777554 358888887 755444455555554455555441 1 2455666655
Q ss_pred H
Q psy14950 69 I 69 (77)
Q Consensus 69 i 69 (77)
+
T Consensus 169 ~ 169 (420)
T KOG0257|consen 169 I 169 (420)
T ss_pred c
Confidence 4
No 229
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=47.18 E-value=61 Score=19.97 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHH
Q psy14950 36 FSDQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (77)
Q Consensus 36 ~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 72 (77)
+...+++..++.++|..+++.. .-+.+-+...++..
T Consensus 11 y~~~p~W~~FF~~LG~~Vv~S~-~T~k~i~~~G~~~~ 46 (221)
T PF09989_consen 11 YEYYPFWQTFFTELGFEVVLSP-PTNKEILDKGVKSA 46 (221)
T ss_pred hhhhHHHHHHHHHcCCEEEECC-CCcHHHHHHHhhhC
Confidence 4678889999999999999986 22344445444433
No 230
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=47.11 E-value=38 Score=18.13 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=15.7
Q ss_pred CChHHHHHH---HHcCCCEEEeCC
Q psy14950 15 GGIHSSMEA---VYHGVPVVMMPG 35 (77)
Q Consensus 15 ~G~~t~~e~---l~~g~P~i~~P~ 35 (77)
.+.||.+|. ...|+|++++-.
T Consensus 74 ~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 74 PDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp --HHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCCcHHHHHHHHHHCCCEEEEEEc
Confidence 578999996 567999999843
No 231
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=46.57 E-value=94 Score=21.34 Aligned_cols=57 Identities=16% Similarity=0.014 Sum_probs=41.3
Q ss_pred ChHHHHHHHHcCCCEEEeCCC--CChHHHHHHHHHhC-ceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 16 GIHSSMEAVYHGVPVVMMPGF--SDQHQNCKLMEEKG-MGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 16 G~~t~~e~l~~g~P~i~~P~~--~~q~~na~~~~~~g-~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
|.-++.+.+-...|+|.-|+. .--...+..+.+.| +|. +....++++++++.|+++-
T Consensus 2 g~~~f~~~lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~-lgag~l~~e~l~~~I~~ir 61 (418)
T cd04742 2 GDRSFKEDYGLRYAYVAGAMARGIASAELVVAMGKAGMLGF-FGAGGLPLDEVEQAIERIQ 61 (418)
T ss_pred CChHHHHHhCCCccEECCcccCCCCCHHHHHHHHhCCCeee-ecCCCCCHHHHHHHHHHHH
Confidence 455677888888999999986 45566677777774 453 4444678999999888773
No 232
>PRK01112 phosphoglyceromutase; Provisional
Probab=46.13 E-value=19 Score=22.14 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=17.5
Q ss_pred ccceEEecCChHHHHHHHHcCCCE
Q psy14950 7 NCKLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
..-++|+|||.....-+...+.|.
T Consensus 174 ~~ilVVsHg~vir~l~~~ll~~~~ 197 (228)
T PRK01112 174 KNVFVSAHGNSLRSLIMDLEKLSE 197 (228)
T ss_pred CeEEEEeCHHHHHHHHHHHhCCCH
Confidence 446788999987777777776554
No 233
>PRK13695 putative NTPase; Provisional
Probab=46.02 E-value=58 Score=18.73 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=29.5
Q ss_pred HHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 20 SMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 20 ~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
+.+++..|.|++++-....-...+.++..+-=+..+....-+++.+...|.+.+
T Consensus 119 l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 119 VEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred HHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 345567788888875432222345555544223333333445777777776544
No 234
>PRK13055 putative lipid kinase; Reviewed
Probab=45.80 E-value=37 Score=22.05 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=23.2
Q ss_pred CccceEEecCChHHHHHHHHc------CCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYH------GVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~------g~P~i~~P~ 35 (77)
...|.+|.-||=||+.|++.. ..|+-++|.
T Consensus 58 ~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 58 AGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred cCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 346899999999999988753 356777885
No 235
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=45.36 E-value=42 Score=21.82 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=22.1
Q ss_pred ccceEEecCChHHHHHH-----HHcCCCEEEeCCCC
Q psy14950 7 NCKLFITHGGIHSSMEA-----VYHGVPVVMMPGFS 37 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~~ 37 (77)
.+|++|.=||. ++... ...|+|+|.+|...
T Consensus 80 ~~d~IIaiGGG-sv~D~aK~iA~~~gip~I~VPTT~ 114 (332)
T cd08549 80 DTEFLLGIGSG-TIIDLVKFVSFKVGKPFISVPTAP 114 (332)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCCEEEeCCCc
Confidence 78999998886 34333 34599999999763
No 236
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=45.22 E-value=39 Score=21.70 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=21.3
Q ss_pred CccceEEecCChHHHHHHH-----Hc--CCCEEEeCCC
Q psy14950 6 RNCKLFITHGGIHSSMEAV-----YH--GVPVVMMPGF 36 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l-----~~--g~P~i~~P~~ 36 (77)
.++|++|.=||. +++... .. |+|++.+|..
T Consensus 77 ~~~d~IIaiGGG-s~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 77 AEVDAVIAVGGG-STLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred cCcCEEEEeCCc-hHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 468899988875 344332 23 9999999975
No 237
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=45.04 E-value=51 Score=21.63 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCccceEEecCChHHHHHHHH---cCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVY---HGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~---~g~P~i~~P~~ 36 (77)
.-..|.+|.=||.+|...+.. .|+|++.+|-.
T Consensus 92 ~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkT 126 (324)
T TIGR02483 92 ELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKT 126 (324)
T ss_pred HcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccc
Confidence 346788999999988876644 59999999953
No 238
>PHA02975 hypothetical protein; Provisional
Probab=45.02 E-value=22 Score=18.06 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=18.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 52 GLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 52 g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
|+-+...+-+.+++.+.++.+|.|+
T Consensus 10 GvFmsS~DdDF~nFI~vVksVLtdk 34 (69)
T PHA02975 10 GVFLESNDSDFEDFIDTIMHVLTGK 34 (69)
T ss_pred HhhcCCChHHHHHHHHHHHHHHcCC
Confidence 5556655656788889999999875
No 239
>PRK00861 putative lipid kinase; Reviewed
Probab=44.96 E-value=46 Score=21.07 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=23.8
Q ss_pred CccceEEecCChHHHHHHHH----cCCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~----~g~P~i~~P~ 35 (77)
...|.+|.-||=||+.|.+. .+.|+-++|.
T Consensus 56 ~~~d~vv~~GGDGTl~evv~~l~~~~~~lgviP~ 89 (300)
T PRK00861 56 RGAELIIASGGDGTLSAVAGALIGTDIPLGIIPR 89 (300)
T ss_pred cCCCEEEEECChHHHHHHHHHHhcCCCcEEEEcC
Confidence 44689999999999998864 4677777885
No 240
>PRK13337 putative lipid kinase; Reviewed
Probab=44.51 E-value=39 Score=21.50 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=23.2
Q ss_pred CccceEEecCChHHHHHHHHc------CCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYH------GVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~------g~P~i~~P~ 35 (77)
+..|.+|.-||=||+.|.+.. ..|+-++|.
T Consensus 56 ~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 56 RKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 456899999999999988762 346777785
No 241
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=44.34 E-value=57 Score=18.35 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=19.6
Q ss_pred HHHHHHHhCce-eeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 42 NCKLMEEKGMG-LITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 42 na~~~~~~g~g-~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
.+..++..|+- ..++ ..+.+++.+++++.+..
T Consensus 113 ~~~~a~a~G~~~~~v~--~~~~~el~~al~~a~~~ 145 (153)
T PF02775_consen 113 FAALAEAFGIKGARVT--TPDPEELEEALREALES 145 (153)
T ss_dssp HHHHHHHTTSEEEEES--CHSHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCcEEEEc--cCCHHHHHHHHHHHHhC
Confidence 44445555654 2333 33459999999988754
No 242
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=44.13 E-value=22 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=15.8
Q ss_pred ceEEecCChHHHHHHHHcCCC
Q psy14950 9 KLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 9 ~~~i~h~G~~t~~e~l~~g~P 29 (77)
-++|+|||...++=+...+.|
T Consensus 164 vliVsHG~vir~ll~~l~~~~ 184 (236)
T PTZ00123 164 VLVAAHGNSLRALVKYLDKMS 184 (236)
T ss_pred EEEEeCHHHHHHHHHHHhCCC
Confidence 479999998776666666655
No 243
>PRK01295 phosphoglyceromutase; Provisional
Probab=43.97 E-value=21 Score=21.45 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=17.4
Q ss_pred cceEEecCChHHHHHHHHcCCCE
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
.-++|+|||..-.+-+...+.|.
T Consensus 152 ~vliVtHg~~ir~l~~~~l~~~~ 174 (206)
T PRK01295 152 RVLVAAHGNSLRALVMVLDGLTP 174 (206)
T ss_pred eEEEEcChHHHHHHHHHHhCCCH
Confidence 45799999987777777777664
No 244
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=43.74 E-value=45 Score=20.68 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=21.3
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
..++++|+.-. |...=|.+.|+|++.+
T Consensus 197 ~~~~l~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 197 ARADLVVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HhCCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 45889999865 3566667899999998
No 245
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=42.69 E-value=22 Score=22.10 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=16.3
Q ss_pred cceEEecCChHHHHHHHHcCCC
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P 29 (77)
.-++|+|||....+-+...|.|
T Consensus 175 ~vlvVsHg~vir~l~~~l~~l~ 196 (245)
T TIGR01258 175 RVLIVAHGNSLRALVKHLEGIS 196 (245)
T ss_pred EEEEEcChHHHHHHHHHHHCcC
Confidence 4579999998777766666655
No 246
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=42.62 E-value=29 Score=22.27 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=19.1
Q ss_pred EecCCh-HHHHHHHHcCCCEEEeCC
Q psy14950 12 ITHGGI-HSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 12 i~h~G~-~t~~e~l~~g~P~i~~P~ 35 (77)
+.+.|. +..+|+..+|+|.|.+..
T Consensus 103 v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 103 ILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred ccccHhHHHHHHHHhcCCCEEEEec
Confidence 455553 667899999999999976
No 247
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=41.89 E-value=39 Score=21.49 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=19.0
Q ss_pred EecCCh-HHHHHHHHcCCCEEEeCC
Q psy14950 12 ITHGGI-HSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 12 i~h~G~-~t~~e~l~~g~P~i~~P~ 35 (77)
|.+.|. +..+|+...|+|.|.+-.
T Consensus 109 v~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 109 TLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred EecchhHHHHHHHHHcCCCeEEEEc
Confidence 445553 778899999999999965
No 248
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=41.87 E-value=65 Score=19.67 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=20.5
Q ss_pred hHHHHHHHHcCCCEEEeCCC--CChHHHHHHHHHhCceee
Q psy14950 17 IHSSMEAVYHGVPVVMMPGF--SDQHQNCKLMEEKGMGLI 54 (77)
Q Consensus 17 ~~t~~e~l~~g~P~i~~P~~--~~q~~na~~~~~~g~g~~ 54 (77)
..|...++..|+|+.++|.. .+...-...+-+.| +..
T Consensus 171 ~~ta~~A~~~gr~v~~vp~~~~~~~~~G~~~Li~~G-A~~ 209 (212)
T PF02481_consen 171 LHTARFALEQGRPVFAVPGPIDDPNSEGNNELIKEG-AKL 209 (212)
T ss_dssp HHHHHHHHHHT--EEE----TT-GGGHHHHHHHHTT--EE
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHcC-CEe
Confidence 46777889999999999754 33455556667777 443
No 249
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=41.77 E-value=23 Score=20.32 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=17.7
Q ss_pred ecCChHHHHHHHHcCCCEEEe
Q psy14950 13 THGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 13 ~h~G~~t~~e~l~~g~P~i~~ 33 (77)
-++|......+...|.|++.+
T Consensus 53 vg~gv~~l~~~arsgrrIlal 73 (135)
T COG4273 53 VGAGVPALVDAARSGRRILAL 73 (135)
T ss_pred ccCCcHHHHHHhhcCCceEEe
Confidence 366777888899999999998
No 250
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=41.64 E-value=65 Score=18.06 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=19.5
Q ss_pred cceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 8 CKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 8 ~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
..+++.+.|. +.+.++...++|+|++.
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 4467777553 45667788899999994
No 251
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=41.46 E-value=45 Score=20.99 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEecCCh-HHHHHHHHcCCCEEEeCC
Q psy14950 11 FITHGGI-HSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 11 ~i~h~G~-~t~~e~l~~g~P~i~~P~ 35 (77)
.|.+.|. +..+|+...|+|.|.+-.
T Consensus 103 ~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 103 DVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred cEecchhHHHHHHHHHcCCCeEEEEe
Confidence 3455663 778899999999999865
No 252
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=41.40 E-value=81 Score=19.10 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=37.6
Q ss_pred HHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceee-eCCCCCCHHHHHHHHHHHHcCC
Q psy14950 20 SMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLI-TPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 20 ~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~-~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
+-|.+..++|.|..-+-.......+.+.+.|--++ ++++ +++.+...+..+|..+
T Consensus 123 ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~--NR~~i~~~Il~~L~~~ 178 (179)
T COG1618 123 VEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPE--NRNRILNEILSVLKGE 178 (179)
T ss_pred HHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccc--hhhHHHHHHHHHhccC
Confidence 44667789998877544556677888888877766 6653 3456776776666654
No 253
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=41.36 E-value=26 Score=17.99 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=18.5
Q ss_pred ceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 51 MGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 51 ~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
.|+-++..+-+.+++.+.++.++.|+
T Consensus 9 fGvFmss~ddDf~~Fi~vVksVltdk 34 (72)
T PF12575_consen 9 FGVFMSSSDDDFNNFINVVKSVLTDK 34 (72)
T ss_pred HhhhcCCCHHHHHHHHHHHHHHHcCC
Confidence 35556655556778888889988875
No 254
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=40.65 E-value=33 Score=22.16 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEecCChHHHHHHHHcCCCEEEeCC
Q psy14950 11 FITHGGIHSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 11 ~i~h~G~~t~~e~l~~g~P~i~~P~ 35 (77)
.|+=+|+.-+..+...|.|+..+|-
T Consensus 90 ~ISDPG~~LV~~a~~~gi~V~~lPG 114 (275)
T COG0313 90 LISDPGYELVRAAREAGIRVVPLPG 114 (275)
T ss_pred cccCccHHHHHHHHHcCCcEEecCC
Confidence 5677788889999999999999984
No 255
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=40.59 E-value=56 Score=18.46 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=25.7
Q ss_pred CCCCCccceEEecCChHHHHHHHHcCCCEEEeCC
Q psy14950 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 2 ~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~ 35 (77)
++.+|..-++|+-|.-= ..-++..|.|.|.+|-
T Consensus 5 v~~~p~~pi~ItEG~kK-A~al~s~G~~aIalpG 37 (130)
T PF12965_consen 5 VLDDPNIPIWITEGAKK-AGALLSQGYPAIALPG 37 (130)
T ss_pred eecCCCccEEEEechHH-HHHHHcCCceEEEeCc
Confidence 46788999999998753 2445678999999984
No 256
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=40.07 E-value=49 Score=16.24 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.1
Q ss_pred EEecCChHHHHHHHHcCCCEEEe
Q psy14950 11 FITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 11 ~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
|-|...-.-+.|+..+|.|++.+
T Consensus 8 ~~HYv~K~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 8 FAHYVRKDKIAESAVMGTPVVAL 30 (58)
T ss_pred EeeecchhHHHHHHhcCceeEee
Confidence 44555567899999999999876
No 257
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=39.97 E-value=93 Score=20.48 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=29.6
Q ss_pred Cccce--EEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhC
Q psy14950 6 RNCKL--FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKG 50 (77)
Q Consensus 6 ~~~~~--~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g 50 (77)
+..++ ..+|||.++....+..|.|.=++ ........+.+.+.|
T Consensus 56 ~g~~v~i~~s~ggSg~~~~qi~~G~~ADV~--~~A~~~~~d~l~~~g 100 (338)
T PRK10852 56 PGDKLTIKQSHAGSSKQALAILQGLKADVV--TYNQVTDVQILHDKG 100 (338)
T ss_pred CCCceEEEEcCCCcHHHHHHHhcCCCcCEE--ecCCHHHHHHHHHCC
Confidence 45555 57999999999999999998666 223333444555555
No 258
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=39.90 E-value=23 Score=22.63 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCCccceEEecCChHH------HHHHHHcCCCEEEe
Q psy14950 4 GHRNCKLFITHGGIHS------SMEAVYHGVPVVMM 33 (77)
Q Consensus 4 ~~~~~~~~i~h~G~~t------~~e~l~~g~P~i~~ 33 (77)
..-.+|++||+-..++ +.-|...|+|+|++
T Consensus 193 ~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 193 EQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 4457899999855433 45567789999999
No 259
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=39.80 E-value=68 Score=18.50 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=18.2
Q ss_pred ceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 9 KLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 9 ~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
.+++.+.|. +.+.++...++|+|++.
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 345555453 45668888999999994
No 260
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=39.78 E-value=1e+02 Score=19.85 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=31.2
Q ss_pred cceEEecCChHHHHHHHH----cCCCEEEe-----CCCCChHHHHHHHHHhCceeeeC
Q psy14950 8 CKLFITHGGIHSSMEAVY----HGVPVVMM-----PGFSDQHQNCKLMEEKGMGLITP 56 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~----~g~P~i~~-----P~~~~q~~na~~~~~~g~g~~~~ 56 (77)
-+.++|||-.+|+...+. .|+.+-++ |...-.. .+..+.+.|+-+.+-
T Consensus 110 g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~-la~eL~~~GI~vtlI 166 (275)
T PRK08335 110 GDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLA-LANELEFLGIEFEVI 166 (275)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHH-HHHHHHHCCCCEEEE
Confidence 457999999988777664 56654333 4322233 488888888776654
No 261
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=39.72 E-value=91 Score=19.20 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=26.6
Q ss_pred hHHHHHHHHcCCCEEEeCCCCC--hHHHHHHHHHhCceeeeC
Q psy14950 17 IHSSMEAVYHGVPVVMMPGFSD--QHQNCKLMEEKGMGLITP 56 (77)
Q Consensus 17 ~~t~~e~l~~g~P~i~~P~~~~--q~~na~~~~~~g~g~~~~ 56 (77)
..|...++..|+|+.++|...+ +..-...+-+.|+....+
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~~ 212 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALITS 212 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEECC
Confidence 3666778889999999986533 334445555668655543
No 262
>KOG3285|consensus
Probab=39.61 E-value=90 Score=19.10 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=40.1
Q ss_pred ccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHH
Q psy14950 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVL 73 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l 73 (77)
.-.++--||..-.+.|.+.+|+-.|..-..--=...-.+..++|+-+.+.. .+++...+++++
T Consensus 6 ~~~~isLkGSa~iV~EFf~y~iNSILyQRgiYPaEdF~~vkKYgLtllvs~----D~elk~f~~~il 68 (203)
T KOG3285|consen 6 TKNCISLKGSAQIVSEFFEYGINSILYQRGIYPAEDFVRVKKYGLTLLVSH----DEELKTFIRNIL 68 (203)
T ss_pred ccceeEeechHHHHHHHHHhhhhHHHHhccCCcHHHhhHHHhcCceEEEec----CHHHHHHHHHHH
Confidence 334455677788999999999999887432111223345678899988875 345555544443
No 263
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=39.59 E-value=1.2e+02 Score=20.43 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=33.3
Q ss_pred HHHcCCCEEEeCCC-CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHH
Q psy14950 23 AVYHGVPVVMMPGF-SDQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (77)
Q Consensus 23 ~l~~g~P~i~~P~~-~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 72 (77)
..+.|+|++.-++. --....|..+.+.|.--.++. .++.++..+.++++
T Consensus 42 ~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk-~~~~e~~~~fv~~~ 91 (346)
T PRK05096 42 QSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHK-HYSVEEWAAFVNNS 91 (346)
T ss_pred ccccCCceEecCCCccccHHHHHHHHHCCCeEEEec-CCCHHHHHHHHHhc
Confidence 34578999999875 455677888888876666664 45666666655543
No 264
>PHA02819 hypothetical protein; Provisional
Probab=39.49 E-value=27 Score=17.81 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=17.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 52 GLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 52 g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
|+-+...+-+.+++.+.++.+|.|+
T Consensus 10 GvFmsS~DdDFnnFI~VVksVLtd~ 34 (71)
T PHA02819 10 GVFMSSSDDDFNNFINVVKSVLNNE 34 (71)
T ss_pred HhhhCCchhHHHHHHHHHHHHHcCC
Confidence 4555555556778888888888774
No 265
>PHA02650 hypothetical protein; Provisional
Probab=39.05 E-value=30 Score=18.11 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=18.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 52 GLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 52 g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
|+-+...+-+.+++.+.++.+|.|+
T Consensus 10 GVFmsS~DdDFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 10 GVFMSSTDDDFNNFIDVVKSVLSDE 34 (81)
T ss_pred hhhcCCcHHHHHHHHHHHHHHHcCC
Confidence 5556655556788888999998875
No 266
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=38.48 E-value=31 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=15.7
Q ss_pred cceEEecCChHHHHHHHHcCCC
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P 29 (77)
.-++|+|||.....=+...+.|
T Consensus 175 ~vlvVtHggvir~l~~~ll~~~ 196 (247)
T PRK14115 175 RVLIAAHGNSLRALVKYLDNIS 196 (247)
T ss_pred eEEEEeChHHHHHHHHHHhCCC
Confidence 3579999998666666666655
No 267
>PRK13462 acid phosphatase; Provisional
Probab=38.29 E-value=38 Score=20.33 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=15.0
Q ss_pred cceEEecCChHHHHHHHHcCCC
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P 29 (77)
.-++|+|||.....=+-..|.|
T Consensus 141 ~vliVsHg~vir~ll~~~l~~~ 162 (203)
T PRK13462 141 DVVFVSHGHFSRAVITRWVELP 162 (203)
T ss_pred CEEEEeCCHHHHHHHHHHhCCC
Confidence 3479999987665555556655
No 268
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=38.28 E-value=70 Score=20.85 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCccceEEecCChHHHHHH-----HHcCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~ 36 (77)
..++|++|.=||. |+++. ...++|+|.+|..
T Consensus 76 ~~~~d~iiavGGG-s~~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 76 VQEADMIFAVGGG-KAIDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred hcCCCEEEEeCCc-HHHHHHHHHHHHcCCCEEEecCc
Confidence 4578999998886 44443 3358999999974
No 269
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=38.23 E-value=65 Score=19.42 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=19.9
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
..++++|+.-.. .+.=|.+.|+|+|.+
T Consensus 182 ~~a~~~I~~Dtg-~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 182 SRADLVIGNDTG-PMHLAAALGTPTVAL 208 (247)
T ss_dssp HTSSEEEEESSH-HHHHHHHTT--EEEE
T ss_pred hcCCEEEecCCh-HHHHHHHHhCCEEEE
Confidence 467889988765 477778899999998
No 270
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=38.04 E-value=36 Score=20.14 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=16.1
Q ss_pred ceEEecCChHHHHHHHHcCCCE
Q psy14950 9 KLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 9 ~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
=++|+|||...+.=+...|.|.
T Consensus 148 vlvVsHg~~ir~l~~~~~~~~~ 169 (208)
T COG0406 148 VLVVSHGGVIRALLAYLLGLDL 169 (208)
T ss_pred EEEEEChHHHHHHHHHhcCCCh
Confidence 5899999987766666666554
No 271
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=37.93 E-value=78 Score=17.90 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=32.3
Q ss_pred HHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 24 VYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 24 l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
+....|.+.+--.+....+...+.+..--+.++.+.+..+++.+.-+++..+|
T Consensus 5 ~K~~LP~vt~~g~F~~~r~~~~l~~~sglv~lDiD~l~~ee~~~~r~~l~~~p 57 (136)
T PF08800_consen 5 LKKKLPYVTPSGTFSGGRNADNLKAYSGLVVLDIDHLDPEEAEELRQLLFEDP 57 (136)
T ss_pred HHhcCCEEEEEEEECCCcchhhhhhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 44568888774334446667777777555667776777666665444444443
No 272
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=37.82 E-value=17 Score=18.15 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=16.3
Q ss_pred ceEEecCChHHHHHHHHcCCC
Q psy14950 9 KLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 9 ~~~i~h~G~~t~~e~l~~g~P 29 (77)
|.+++--|..|..|+|..|++
T Consensus 25 dhvL~~LGgrT~~eAL~~G~d 45 (63)
T PF11248_consen 25 DHVLSELGGRTAAEALEAGVD 45 (63)
T ss_pred hcchhhcCCcCHHHHHHcCCC
Confidence 456667777789999998876
No 273
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=37.77 E-value=39 Score=21.47 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=19.0
Q ss_pred EecCCh-HHHHHHHHcCCCEEEeCC
Q psy14950 12 ITHGGI-HSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 12 i~h~G~-~t~~e~l~~g~P~i~~P~ 35 (77)
|.+.|. +..+|+..+|+|.|.+-.
T Consensus 104 v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 104 VLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred CcccHhHHHHHHHHhcCCCeEEEEc
Confidence 445553 677899999999999865
No 274
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=37.44 E-value=56 Score=22.85 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=21.9
Q ss_pred ccceEEecCChHH------HHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGIHS------SMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~t------~~e~l~~g~P~i~~P 34 (77)
+..+++.+.|.|. +.+|...++|+|++.
T Consensus 74 ~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 74 KVAVVTAQNGPAATLLVAPLAEALKASVPIVALV 107 (578)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4456677777655 889999999999983
No 275
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=37.33 E-value=30 Score=21.62 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=14.3
Q ss_pred ceEEecCChHHHHHHHHcCCC
Q psy14950 9 KLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 9 ~~~i~h~G~~t~~e~l~~g~P 29 (77)
-++|+|||..-..=+...|.|
T Consensus 178 iliVsHggvir~l~~~~~~~~ 198 (249)
T PRK14120 178 VLIAAHGNSLRALVKHLDGIS 198 (249)
T ss_pred EEEEeCHHHHHHHHHHHhCCC
Confidence 468999987655555555655
No 276
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=37.02 E-value=66 Score=20.89 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=22.3
Q ss_pred CccceEEecCChHHHHHH-----HHcCCCEEEeCCCC
Q psy14950 6 RNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGFS 37 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~~ 37 (77)
..+|.+|.=||. |+++. ...++|+|.+|...
T Consensus 76 ~~~d~IIaiGGG-s~iD~aK~ia~~~~~p~i~IPTta 111 (337)
T cd08177 76 AGADGIVAIGGG-STIDLAKAIALRTGLPIIAIPTTL 111 (337)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHhcCCEEEEcCCc
Confidence 568889988776 45443 23489999999753
No 277
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=36.57 E-value=40 Score=22.94 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCCccceEEecCChHHHHHHHH-------c--CCCEEEeCC
Q psy14950 4 GHRNCKLFITHGGIHSSMEAVY-------H--GVPVVMMPG 35 (77)
Q Consensus 4 ~~~~~~~~i~h~G~~t~~e~l~-------~--g~P~i~~P~ 35 (77)
..-..|.+|.=||-+|..-+.. . ++|++.+|-
T Consensus 109 ~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPk 149 (403)
T PRK06555 109 AADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPK 149 (403)
T ss_pred HHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeee
Confidence 3446788999999888765533 2 799999994
No 278
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=36.23 E-value=92 Score=20.06 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=28.1
Q ss_pred eEEecCChHHHHHHHHcCCCEE--EeCCCCChHHHHHHHHHhCc
Q psy14950 10 LFITHGGIHSSMEAVYHGVPVV--MMPGFSDQHQNCKLMEEKGM 51 (77)
Q Consensus 10 ~~i~h~G~~t~~e~l~~g~P~i--~~P~~~~q~~na~~~~~~g~ 51 (77)
++++-||+..+.+.+..-.|-. .++ ...|..||+-+.+.|.
T Consensus 277 Iil~GGGa~ll~~~l~~~f~~~~i~~~-~dp~~ANarG~~~~g~ 319 (320)
T TIGR03739 277 IVLVGGGAFLFKKAVKAAFPKHRIVEV-DEPMFANVRGFQIAGL 319 (320)
T ss_pred EEEeCCcHHHHHHHHHHHCCCCeeEec-CCcHHHHHHHHHHhhc
Confidence 5777788877778886655543 222 2459999998877664
No 279
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=36.18 E-value=46 Score=19.43 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=19.7
Q ss_pred ceEEecCChHHHHH--------HHHcCCCEEEeCCCC
Q psy14950 9 KLFITHGGIHSSME--------AVYHGVPVVMMPGFS 37 (77)
Q Consensus 9 ~~~i~h~G~~t~~e--------~l~~g~P~i~~P~~~ 37 (77)
.+++|.++.+...+ +...|+|++++|...
T Consensus 30 ~lV~tka~g~AAQsGIp~~~kla~k~G~~vlvf~dL~ 66 (147)
T COG4080 30 RLVLTKAKGSAAQSGIPEVLKLAFKLGKPVLVFPDLD 66 (147)
T ss_pred EEEEEecccHhhhhccHHHHHHHHHhCCcEEEehhHH
Confidence 45777777654444 456799999998643
No 280
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=35.52 E-value=48 Score=20.98 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=18.8
Q ss_pred EecCCh-HHHHHHHHcCCCEEEeCC
Q psy14950 12 ITHGGI-HSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 12 i~h~G~-~t~~e~l~~g~P~i~~P~ 35 (77)
|.+.|. +..+|+...|+|.|.+..
T Consensus 100 v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 100 VLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred eeccHHHHHHHHHHhcCCCeEEEec
Confidence 345553 667899999999999976
No 281
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=35.38 E-value=68 Score=21.05 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=21.8
Q ss_pred CCccceEEecCChHHHHHHHH----------------------cCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVY----------------------HGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~----------------------~g~P~i~~P~~ 36 (77)
..++|++|.=||. |++.+.. .++|+|.+|..
T Consensus 81 ~~~~D~IIavGGG-SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 81 KFNADFVIGIGGG-SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred hcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 4567888988886 4444432 27899999975
No 282
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=35.16 E-value=1e+02 Score=18.59 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=31.4
Q ss_pred cCCCEEEeCCCCChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 26 HGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 26 ~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
...|+|++....+.......+.+.|+.=.+.. ..+.+++.++|+.++..
T Consensus 67 p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K-~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 67 PRMRRLVIADDDIEARLIGSLSPSPLDGVLSK-ASTLEILQQELFLSLNG 115 (207)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHcCCeEEEec-CCCHHHHHHHHHHHHCC
Confidence 47788888654444434444546676334443 56789999999988764
No 283
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=35.04 E-value=82 Score=20.73 Aligned_cols=31 Identities=35% Similarity=0.764 Sum_probs=22.5
Q ss_pred CCccceEEecCChHHHHHH-----HHcCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~ 36 (77)
..++|++|.=||. |++.. ...++|++.+|..
T Consensus 82 ~~~~d~IIavGGG-sv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 82 ENGCDVVIGIGGG-KTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred hcCCCEEEEecCh-HHHHHHHHHHHHcCCCEEEeCCc
Confidence 3468999999886 34433 3348999999974
No 284
>PRK12361 hypothetical protein; Provisional
Probab=34.93 E-value=61 Score=22.57 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=23.9
Q ss_pred CccceEEecCChHHHHHHHH----cCCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVY----HGVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~----~g~P~i~~P~ 35 (77)
...|.+|.-||-||+.|.+. .++|+-++|.
T Consensus 296 ~~~d~Viv~GGDGTl~ev~~~l~~~~~~lgiiP~ 329 (547)
T PRK12361 296 AGADIVIACGGDGTVTEVASELVNTDITLGIIPL 329 (547)
T ss_pred cCCCEEEEECCCcHHHHHHHHHhcCCCCEEEecC
Confidence 45689999999999988874 3678888885
No 285
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=34.91 E-value=1.2e+02 Score=19.00 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=23.2
Q ss_pred ceEEecCChHH-HHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCC
Q psy14950 9 KLFITHGGIHS-SMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 9 ~~~i~h~G~~t-~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~ 57 (77)
++.|.-|+.++ +.+++..|.=.++-....+. .+..+.+.|+.+..-.
T Consensus 169 rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k~h--~~~~A~~~gi~li~~g 216 (249)
T TIGR00486 169 KVAVVSGSGLSFIMKALREGVDAYITGDLSHH--TAHLARELGLNVIDAG 216 (249)
T ss_pred EEEEEcCchHHHHHHHHHcCCCEEEecCCchH--HHHHHHHCCCEEEEcC
Confidence 34455444333 34666667666555332222 2334456677655443
No 286
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=34.60 E-value=1.1e+02 Score=18.86 Aligned_cols=49 Identities=22% Similarity=0.476 Sum_probs=29.9
Q ss_pred cCCCEEEeCCCC----Ch---HHHHHHHHHhCceeeeCCC------------CCCHHHHHHHHHHHHc
Q psy14950 26 HGVPVVMMPGFS----DQ---HQNCKLMEEKGMGLITPHE------------TITGDILYITIREVLN 74 (77)
Q Consensus 26 ~g~P~i~~P~~~----~q---~~na~~~~~~g~g~~~~~~------------~~~~~~l~~~i~~~l~ 74 (77)
.++|.+++|-.. +. ..|.+.+.+.|.-+.-... -.+++++...+.+.+.
T Consensus 131 ~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~lAcg~~G~Grm~ep~~I~~~i~~~l~ 198 (209)
T PLN02496 131 YSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYGNGAMAEPSLIYSTVRLFLE 198 (209)
T ss_pred CCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCcccCCCcCCCCCCCHHHHHHHHHHHHh
Confidence 479999999642 22 2455667777765543211 1356778777776664
No 287
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=34.60 E-value=87 Score=21.84 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEeCCCC-ChHHHHHHHHHh-CceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 20 SMEAVYHGVPVVMMPGFS-DQHQNCKLMEEK-GMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 20 ~~e~l~~g~P~i~~P~~~-~q~~na~~~~~~-g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
+.+.+....|++.-|+.. -....|..+.+. |+|+. . .+++.++..+.++++..
T Consensus 43 l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi-~-~~~~~e~~~~~v~kvk~ 97 (495)
T PTZ00314 43 LTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVI-H-NNCSIEEQVEEVRKVKR 97 (495)
T ss_pred ccCCcccCCceeecCccccccHHHHHHHHHCCCeEEe-c-CCCCHHHHHHHHhhccc
Confidence 445677789999988763 445667777766 78886 4 37788888888887753
No 288
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=34.32 E-value=1e+02 Score=18.33 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=31.8
Q ss_pred CCCEEEeCCCC----C---hHHHHHHHHHhCceeeeCCC------------CCCHHHHHHHHHHHHc
Q psy14950 27 GVPVVMMPGFS----D---QHQNCKLMEEKGMGLITPHE------------TITGDILYITIREVLN 74 (77)
Q Consensus 27 g~P~i~~P~~~----~---q~~na~~~~~~g~g~~~~~~------------~~~~~~l~~~i~~~l~ 74 (77)
++|.+++|... . ...|...+.+.|.-+.-... -.+.+++.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 89999999632 2 24677788888876554331 1346777777776654
No 289
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=33.85 E-value=76 Score=21.94 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=20.9
Q ss_pred ccceEEecCChH------HHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGIH------SSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~~------t~~e~l~~g~P~i~~ 33 (77)
+..+++.|.|.| .+.+|...++|+|++
T Consensus 73 ~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i 105 (530)
T PRK07092 73 NAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVIT 105 (530)
T ss_pred CceEEEeccCchHHHHHHHHHHHhhcCCCEEEE
Confidence 455677776654 677889999999998
No 290
>PRK10586 putative oxidoreductase; Provisional
Probab=33.39 E-value=86 Score=20.79 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=21.3
Q ss_pred CccceEEecCChHHHHHHH-----HcCCCEEEeCCC
Q psy14950 6 RNCKLFITHGGIHSSMEAV-----YHGVPVVMMPGF 36 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l-----~~g~P~i~~P~~ 36 (77)
..+|++|.=||.. .+.+. ..++|++.+|..
T Consensus 85 ~~~d~iiavGGGs-~iD~aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 85 DDRQVVIGVGGGA-LLDTAKALARRLGLPFVAIPTI 119 (362)
T ss_pred cCCCEEEEecCcH-HHHHHHHHHhhcCCCEEEEeCC
Confidence 3679999988864 44332 348999999974
No 291
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=33.35 E-value=1.5e+02 Score=19.89 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=35.2
Q ss_pred HHHcCCCEEEeCCC-CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 23 AVYHGVPVVMMPGF-SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 23 ~l~~g~P~i~~P~~-~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
.+..++|+|.-.+. --....|..+.+.|.--.++. .++.++..+.+++...
T Consensus 41 ~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk-~~~~e~~~~~v~~~~~ 92 (343)
T TIGR01305 41 QTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHK-HYSVDEWKAFATNSSP 92 (343)
T ss_pred ceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEee-CCCHHHHHHHHHhhcc
Confidence 45679999998764 455677888888876666664 5677777777766443
No 292
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=33.16 E-value=66 Score=17.59 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=21.0
Q ss_pred ceEEecCChHHHHHHHHc----CC----CEEEeCC
Q psy14950 9 KLFITHGGIHSSMEAVYH----GV----PVVMMPG 35 (77)
Q Consensus 9 ~~~i~h~G~~t~~e~l~~----g~----P~i~~P~ 35 (77)
+.+|.=||-||+.+.+.. .. |+-++|.
T Consensus 56 ~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 56 DVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-
T ss_pred cEEEEEcCccHHHHHHHHHhhcCCCccceEEEecC
Confidence 789999999999998752 33 7777785
No 293
>PHA02844 putative transmembrane protein; Provisional
Probab=33.04 E-value=41 Score=17.39 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=18.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 52 GLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 52 g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
|+-+...+-+.+++.+.++.+|.|+
T Consensus 10 GVFmsS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 10 GVFLSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hhhcCCchHHHHHHHHHHHHHHcCC
Confidence 5556655556788888999998875
No 294
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=33.01 E-value=1.1e+02 Score=18.17 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=20.3
Q ss_pred cCCCEEEeCCCC----C---hHHHHHHHHHhCceeee
Q psy14950 26 HGVPVVMMPGFS----D---QHQNCKLMEEKGMGLIT 55 (77)
Q Consensus 26 ~g~P~i~~P~~~----~---q~~na~~~~~~g~g~~~ 55 (77)
.++|.+++|-.. + -..|...+.+.|.-+.-
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~ 147 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQ 147 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEEC
Confidence 389999999432 2 23577778888876543
No 295
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=32.84 E-value=1.5e+02 Score=19.72 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=7.9
Q ss_pred ceEEecCChHHHH
Q psy14950 9 KLFITHGGIHSSM 21 (77)
Q Consensus 9 ~~~i~h~G~~t~~ 21 (77)
+++|+.|+...+.
T Consensus 143 ~Iiit~G~~~al~ 155 (431)
T PRK15481 143 EIDLTSGAIDAIE 155 (431)
T ss_pred eEEEecCcHHHHH
Confidence 5677777664443
No 296
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.72 E-value=89 Score=21.82 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=21.4
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..+++.|.|- +.+.+|...++|+|++
T Consensus 66 ~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i 98 (563)
T PRK08527 66 KVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLI 98 (563)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEE
Confidence 45677777774 5677889999999998
No 297
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=32.63 E-value=58 Score=20.76 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=18.5
Q ss_pred EecCCh-HHHHHHHHcCCCEEEeCC
Q psy14950 12 ITHGGI-HSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 12 i~h~G~-~t~~e~l~~g~P~i~~P~ 35 (77)
|.+.|. +..+|+..+|+|.|.+-.
T Consensus 105 v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 105 VLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred cccchhHHHHHHHHhcCCCeEEEEe
Confidence 345553 667899999999999975
No 298
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=32.54 E-value=79 Score=20.94 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred CCccceEEecCChHHHHHHH-------------------------HcCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAV-------------------------YHGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l-------------------------~~g~P~i~~P~~ 36 (77)
..++|++|.=||. +++.+. ..++|+|.+|..
T Consensus 84 ~~~~D~IiaiGGG-SviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 84 ASGADYLIAIGGG-SPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred hcCCCEEEEeCCh-HHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 3567888888776 444443 135899999975
No 299
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=32.44 E-value=53 Score=22.68 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=30.9
Q ss_pred CCCCCccceEEecCChHHHHHHHHcCCCEEEeCCCCChHHHHHHHH
Q psy14950 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME 47 (77)
Q Consensus 2 ~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~ 47 (77)
.++.|+-+++.-|+-+|| .|+|.++.=.+.|+..++..+.
T Consensus 84 ~~~~~~~~i~~ihaSSGT------TGkPt~~~~t~~D~~~wa~~~a 123 (438)
T COG1541 84 DFAVPKEEIVRIHASSGT------TGKPTVFGYTAKDIERWAELLA 123 (438)
T ss_pred cccccccceEEEEccCCC------CCCceeeecCHHHHHHHHHHHH
Confidence 467888888877877775 4999998877778887777654
No 300
>PLN02884 6-phosphofructokinase
Probab=32.37 E-value=78 Score=21.61 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=23.4
Q ss_pred CCccceEEecCChHHHHHHHH-------cC--CCEEEeCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVY-------HG--VPVVMMPG 35 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~-------~g--~P~i~~P~ 35 (77)
.-..|.+|.=||.+|..-+.. .| +|+|.+|-
T Consensus 141 ~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPk 180 (411)
T PLN02884 141 ARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPK 180 (411)
T ss_pred HcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccc
Confidence 346788999999988865533 45 99999984
No 301
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=32.35 E-value=91 Score=17.99 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=19.6
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.+.|. +.+.++...+.|+|++.
T Consensus 64 ~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~ 97 (172)
T PF02776_consen 64 RPGVVIVTSGPGATNALTGLANAYADRIPVLVIT 97 (172)
T ss_dssp SEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEE
T ss_pred cceEEEeecccchHHHHHHHhhcccceeeEEEEe
Confidence 34567777763 55678888999999984
No 302
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=32.10 E-value=94 Score=20.36 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=21.1
Q ss_pred CccceEEecCChHHHHHH-----HHcCCCEEEeCCC
Q psy14950 6 RNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~ 36 (77)
..+|++|.=||. ++... ...|+|+|.+|..
T Consensus 86 ~~~d~IIaiGGG-sv~D~ak~vA~~rgip~I~IPTT 120 (350)
T PRK00843 86 VNAGFLIGVGGG-KVIDVAKLAAYRLGIPFISVPTA 120 (350)
T ss_pred cCCCEEEEeCCc-hHHHHHHHHHHhcCCCEEEeCCC
Confidence 357888888875 33322 3459999999975
No 303
>PRK14071 6-phosphofructokinase; Provisional
Probab=31.92 E-value=1.6e+02 Score=19.69 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=24.1
Q ss_pred cCChHHHHHHHHcCCCEEEeCCC-CChHHHHHHH
Q psy14950 14 HGGIHSSMEAVYHGVPVVMMPGF-SDQHQNCKLM 46 (77)
Q Consensus 14 h~G~~t~~e~l~~g~P~i~~P~~-~~q~~na~~~ 46 (77)
|+||-+..-+++.|.-++.+|-. .+....++.+
T Consensus 187 ~~G~LAl~~~la~ga~~iliPE~~~~~~~l~~~i 220 (360)
T PRK14071 187 DAGHIALAAGIAGGADVILIPEIPYTLENVCKKI 220 (360)
T ss_pred CccHHHHHhHhhcCCCEEEECCCCCCHHHHHHHH
Confidence 88999999999999999999854 3433333333
No 304
>PLN02775 Probable dihydrodipicolinate reductase
Probab=31.86 E-value=1.5e+02 Score=19.33 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=25.1
Q ss_pred HHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeCC
Q psy14950 19 SSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 19 t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~~ 57 (77)
.+.-++.+|+|+++.....++.......++.++++.+.+
T Consensus 96 ~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~ap 134 (286)
T PLN02775 96 NAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAP 134 (286)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEEC
Confidence 344567788888888655554444444555577777776
No 305
>KOG3446|consensus
Probab=31.64 E-value=83 Score=16.86 Aligned_cols=47 Identities=6% Similarity=0.099 Sum_probs=30.2
Q ss_pred CCCEEEeCCCCChH-HHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 27 GVPVVMMPGFSDQH-QNCKLMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 27 g~P~i~~P~~~~q~-~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
..|+++---.+-|+ .+|++ ..|.-+.++.++++.+++.+++.++...
T Consensus 49 ~lPILIREcSgVqPrl~ARY--~~G~E~~v~L~~~s~~~i~kale~l~k~ 96 (97)
T KOG3446|consen 49 DLPILIRECSGVQPRLWARY--GNGVERSVSLANLSAPQIHKALENLGKQ 96 (97)
T ss_pred CCcEeehhhcCCchHHHHHh--cCCceEEeehhhcchHHHHHHHHHHhcC
Confidence 55666543334444 23333 2355667777899999999999888653
No 306
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=31.64 E-value=2.2e+02 Score=21.21 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred cCChHHHHHHHHcCCCEEEeCCC
Q psy14950 14 HGGIHSSMEAVYHGVPVVMMPGF 36 (77)
Q Consensus 14 h~G~~t~~e~l~~g~P~i~~P~~ 36 (77)
|+||-+..-+++.|.-.+.+|-.
T Consensus 196 ~~G~LAl~aalA~gad~iliPE~ 218 (745)
T TIGR02478 196 HCGYLALMAAIATGADYVFIPER 218 (745)
T ss_pred cccHHHHHHHhccCCCEEEecCC
Confidence 88999999999999999999864
No 307
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=31.62 E-value=16 Score=14.74 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=10.3
Q ss_pred ChHHHHHHHHcCCCEE
Q psy14950 16 GIHSSMEAVYHGVPVV 31 (77)
Q Consensus 16 G~~t~~e~l~~g~P~i 31 (77)
|.|++...+..|.|.+
T Consensus 1 gIGa~Lkvla~~LP~l 16 (26)
T PF01372_consen 1 GIGAILKVLATGLPTL 16 (26)
T ss_dssp -HHHHHHHHHTHHHHH
T ss_pred ChhHHHHHHHhcChHH
Confidence 4567777777777654
No 308
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=31.49 E-value=77 Score=16.00 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=17.5
Q ss_pred CccceEEecCCh---HHHHHHHHcCCCEEEeC
Q psy14950 6 RNCKLFITHGGI---HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~---~t~~e~l~~g~P~i~~P 34 (77)
.++..+|+-.|. .+..-+...|+|+++-.
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 345555655553 34455667899999874
No 309
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.05 E-value=1.3e+02 Score=18.27 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=17.1
Q ss_pred ccceEEecCChHH--HHHHHH--cCCCEEEeCC
Q psy14950 7 NCKLFITHGGIHS--SMEAVY--HGVPVVMMPG 35 (77)
Q Consensus 7 ~~~~~i~h~G~~t--~~e~l~--~g~P~i~~P~ 35 (77)
+-|++|...+... ..+.+. .|.|++.++.
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 4567776554432 345442 6788888764
No 310
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.95 E-value=93 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=21.2
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..++++|.|- +.+.+|...++|+|++.
T Consensus 67 ~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 67 KVGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44567777774 45778999999999983
No 311
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=30.75 E-value=1.1e+02 Score=17.60 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=26.7
Q ss_pred HcCCCEEEeCCCCC--hHHHHHHHHHhCceeeeCCCCCCHHHHHHHHH
Q psy14950 25 YHGVPVVMMPGFSD--QHQNCKLMEEKGMGLITPHETITGDILYITIR 70 (77)
Q Consensus 25 ~~g~P~i~~P~~~~--q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~ 70 (77)
..|++++.+....+ .....+.+.+.+-|......+.+...+..+++
T Consensus 130 ~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~~~~~~ 177 (178)
T cd01451 130 ARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAIASAVR 177 (178)
T ss_pred hcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHHHHHhh
Confidence 45777766654332 23345556666666666666666666666554
No 312
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=30.67 E-value=92 Score=20.29 Aligned_cols=32 Identities=28% Similarity=0.587 Sum_probs=23.0
Q ss_pred CCCccceEEecCChHHHHHH-----HHcCCCEEEeCCC
Q psy14950 4 GHRNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (77)
Q Consensus 4 ~~~~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~ 36 (77)
...++|++|.=||.. ++.+ +..++|++.+|..
T Consensus 74 ~~~~~D~IIavGGGS-~iD~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 74 RDNGADVVIGIGGGK-TLDTAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred hhcCCCEEEEecCch-hhHHHHHHHHHcCCCEEEeCCc
Confidence 345789999988874 4433 3358999999974
No 313
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=30.32 E-value=1.2e+02 Score=20.44 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=22.2
Q ss_pred CccceEEecCChHHHH----HHHHcCCCEEEeCCC
Q psy14950 6 RNCKLFITHGGIHSSM----EAVYHGVPVVMMPGF 36 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~----e~l~~g~P~i~~P~~ 36 (77)
..+|++|-=||.-++= -+-..|+|+|.+|..
T Consensus 83 ~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT~ 117 (360)
T COG0371 83 DGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPTI 117 (360)
T ss_pred cCCCEEEEecCcHHHHHHHHHHHHcCCCEEEecCc
Confidence 4678888888864332 234579999999974
No 314
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=29.99 E-value=98 Score=19.69 Aligned_cols=64 Identities=8% Similarity=0.082 Sum_probs=39.4
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe--CCCCCh----HHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM--PGFSDQ----HQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~--P~~~~q----~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
..||++|+.... ...=|.+.|+|++.+ |..... ..+...+.. . .-..++++.+++.++++++++
T Consensus 252 ~~a~l~I~nDSG-p~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~--~--~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 252 AGAKAVVSVDTG-LSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS--P--GKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred HhCCEEEecCCc-HHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC--C--CcccccCCHHHHHHHHHHHhh
Confidence 468899998765 577788899999998 543211 011111100 0 011246789999999998874
No 315
>PRK07064 hypothetical protein; Provisional
Probab=29.62 E-value=1.1e+02 Score=21.09 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred CccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 6 RNCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 6 ~~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
.+..++++|.|. +.+.+|...++|+|++
T Consensus 65 g~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i 98 (544)
T PRK07064 65 GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHI 98 (544)
T ss_pred CCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 345667777774 4677888999999998
No 316
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=29.44 E-value=1.3e+02 Score=18.05 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHcCCCEEEeCCC--CCh--HHHHHHHHHhCceeeeCC
Q psy14950 23 AVYHGVPVVMMPGF--SDQ--HQNCKLMEEKGMGLITPH 57 (77)
Q Consensus 23 ~l~~g~P~i~~P~~--~~q--~~na~~~~~~g~g~~~~~ 57 (77)
++..++|.+++|.. .+. ..|...+.+.|.-+.-..
T Consensus 111 ~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P~ 149 (185)
T PRK06029 111 MLKERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPPV 149 (185)
T ss_pred HHhcCCCEEEEeccccCCHHHHHHHHHHHHCcCEEECCC
Confidence 46689999999842 222 367788888887766543
No 317
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=29.42 E-value=60 Score=20.60 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=17.9
Q ss_pred ecCCh-HHHHHHHHcCCCEEEeCC
Q psy14950 13 THGGI-HSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 13 ~h~G~-~t~~e~l~~g~P~i~~P~ 35 (77)
.+.|. +..+|+...|+|.|.+-.
T Consensus 106 ~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 106 LYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred ccchhHHHHHHHHHcCCCeEEEEe
Confidence 44553 667899999999999865
No 318
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=29.37 E-value=1e+02 Score=20.45 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCccceEEecCChHHHHHHH---H--------------------cCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAV---Y--------------------HGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l---~--------------------~g~P~i~~P~~ 36 (77)
..++|++|.=||. |++... + .++|+|.+|..
T Consensus 84 ~~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 84 EEKVDFILAVGGG-SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HcCCCEEEEeCCh-HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 3467899988876 344332 1 26899999974
No 319
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=29.34 E-value=1.1e+02 Score=19.85 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=20.9
Q ss_pred ccceEEecCChHHHHHHH-----HcCCCEEEeCCC
Q psy14950 7 NCKLFITHGGIHSSMEAV-----YHGVPVVMMPGF 36 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l-----~~g~P~i~~P~~ 36 (77)
++|++|.=||. ++.... ..|+|++.+|..
T Consensus 75 ~~d~iIaiGGG-sv~D~aK~vA~~~~~p~i~vPTt 108 (331)
T cd08174 75 NVDAVVGIGGG-KVIDVAKYAAFLRGIPLSVPTTN 108 (331)
T ss_pred CCCEEEEeCCc-HHHHHHHHHHhhcCCCEEEecCc
Confidence 57888887775 444432 459999999974
No 320
>PLN02470 acetolactate synthase
Probab=29.14 E-value=1.1e+02 Score=21.51 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=22.1
Q ss_pred CccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 6 RNCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
.+..+++.|.|. +.+.+|...++|+|++.
T Consensus 75 g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 75 GKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 345677787774 45778899999999993
No 321
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.06 E-value=1.2e+02 Score=17.42 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=14.2
Q ss_pred cceEEecCChHH--HHHHH-HcCCCEEEeCC
Q psy14950 8 CKLFITHGGIHS--SMEAV-YHGVPVVMMPG 35 (77)
Q Consensus 8 ~~~~i~h~G~~t--~~e~l-~~g~P~i~~P~ 35 (77)
=|++|..++... ..+.+ ..|+|.+.++.
T Consensus 70 PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 70 PDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 355555443322 33333 46777777753
No 322
>PRK08322 acetolactate synthase; Reviewed
Probab=28.89 E-value=1.1e+02 Score=21.22 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=21.8
Q ss_pred CccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 6 RNCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
.+..+++.|.|. +.+.+|...++|+|++.
T Consensus 62 g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 62 GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 345567777663 46778899999999983
No 323
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=28.72 E-value=1.1e+02 Score=19.75 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=21.5
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
..|+++|++-.. -..=|.+.|+|.+.+
T Consensus 261 ~~a~l~v~nDSG-p~HlAaA~g~P~v~l 287 (352)
T PRK10422 261 DHAQLFIGVDSA-PAHIAAAVNTPLICL 287 (352)
T ss_pred HhCCEEEecCCH-HHHHHHHcCCCEEEE
Confidence 458889998765 466778889999987
No 324
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=28.61 E-value=1.9e+02 Score=19.50 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=20.3
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..+++++.|. +.+.++...++|+|++
T Consensus 63 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 45567777664 4566888899999999
No 325
>PRK08266 hypothetical protein; Provisional
Probab=28.37 E-value=1.2e+02 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=21.0
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..+++.|.|. +.+.+|...++|+|++
T Consensus 68 ~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 100 (542)
T PRK08266 68 RPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCL 100 (542)
T ss_pred CCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEE
Confidence 44567777774 5677899999999998
No 326
>KOG2670|consensus
Probab=28.12 E-value=2e+02 Score=19.58 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=38.1
Q ss_pred hHHHHHHHHcCCCEEEeCCCCChHHHHHHHH-HhCceeeeCCCCC---CHHHHHHHHHH
Q psy14950 17 IHSSMEAVYHGVPVVMMPGFSDQHQNCKLME-EKGMGLITPHETI---TGDILYITIRE 71 (77)
Q Consensus 17 ~~t~~e~l~~g~P~i~~P~~~~q~~na~~~~-~~g~g~~~~~~~~---~~~~l~~~i~~ 71 (77)
..-.+..+...-|++.+-..+||.++..+.. ....++.+-.+++ ++..+++++.+
T Consensus 278 L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVgDDLtvTnpkri~~Ai~~ 336 (433)
T KOG2670|consen 278 LADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVGDDLTVTNPKRIATAIEE 336 (433)
T ss_pred HHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhccceEEecCcccccCHHHHHHHHHH
Confidence 4556777888999999977788888777654 2235555444443 47788888865
No 327
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=28.09 E-value=1.2e+02 Score=20.39 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=27.2
Q ss_pred ceEEecC---------ChHHHHH----HHHcCCCEEEeC---CCCCh--HHHHHHHHHhCceeeeC
Q psy14950 9 KLFITHG---------GIHSSME----AVYHGVPVVMMP---GFSDQ--HQNCKLMEEKGMGLITP 56 (77)
Q Consensus 9 ~~~i~h~---------G~~t~~e----~l~~g~P~i~~P---~~~~q--~~na~~~~~~g~g~~~~ 56 (77)
+.++||| |+||... +...|+.+-++- ....| ...+..+.+.|+-+.+-
T Consensus 168 ~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI 233 (363)
T PRK05772 168 DTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLI 233 (363)
T ss_pred CEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEE
Confidence 4678886 3444443 445677765551 12333 34567788888766543
No 328
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=28.05 E-value=1.1e+02 Score=20.30 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=21.1
Q ss_pred CCccceEEecCChHHHHHH---HH--c------------------CCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEA---VY--H------------------GVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~---l~--~------------------g~P~i~~P~~ 36 (77)
..++|++|.=||. |++.+ ++ . ++|+|.+|..
T Consensus 77 ~~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 77 RAGPDVIIGLGGG-SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred hcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 3578888888876 34433 21 1 7899999975
No 329
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.87 E-value=1.3e+02 Score=21.13 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=20.6
Q ss_pred ccceEEecCChHHHHH-------HHHcCCCEEEeCC
Q psy14950 7 NCKLFITHGGIHSSME-------AVYHGVPVVMMPG 35 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e-------~l~~g~P~i~~P~ 35 (77)
.+|++|.=||. ++.. ....|+|++.+|.
T Consensus 269 r~D~IIAIGGG-sv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 269 RSDAIVGLGGG-AATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred CCcEEEEEcCh-HHHHHHHHHHHHHHcCCCEEEeCC
Confidence 68899988885 2222 2346999999998
No 330
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=27.81 E-value=67 Score=17.73 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=15.3
Q ss_pred ccceEEecCChHHHHHHHHcCCC
Q psy14950 7 NCKLFITHGGIHSSMEAVYHGVP 29 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~g~P 29 (77)
..-++|+|+|....+-....+.|
T Consensus 100 ~~iliV~H~~~i~~~~~~l~~~~ 122 (153)
T cd07067 100 KNVLIVSHGGVLRALLAYLLGLS 122 (153)
T ss_pred CeEEEEeChHHHHHHHHHHhCCC
Confidence 44579999987655555555554
No 331
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=27.66 E-value=42 Score=11.65 Aligned_cols=11 Identities=36% Similarity=0.446 Sum_probs=7.6
Q ss_pred HHHHHHHHcCC
Q psy14950 18 HSSMEAVYHGV 28 (77)
Q Consensus 18 ~t~~e~l~~g~ 28 (77)
-|..|++..|.
T Consensus 4 dsllealqtg~ 14 (15)
T PF06345_consen 4 DSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHccC
Confidence 46778887764
No 332
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=27.64 E-value=59 Score=21.36 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=17.0
Q ss_pred cceEEecCChHHHHHHHHcCCCE
Q psy14950 8 CKLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
.-++|+|||....+-+...|.|.
T Consensus 314 ~vlvVtHg~~ir~ll~~~l~~~~ 336 (372)
T PRK07238 314 TVLVVSHVTPIKTLLRLALDAGP 336 (372)
T ss_pred eEEEEEChHHHHHHHHHHhCCCH
Confidence 45799999987777776667554
No 333
>PLN02859 glutamine-tRNA ligase
Probab=27.62 E-value=86 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=18.9
Q ss_pred HHHHhCceeeeCCCCCCHHHHHHHHHHHHcC
Q psy14950 45 LMEEKGMGLITPHETITGDILYITIREVLNN 75 (77)
Q Consensus 45 ~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~~ 75 (77)
+-.+.|+|+.++ ++++.++|.+.+++
T Consensus 109 Fek~CGVGV~VT-----~EqI~~~V~~~i~~ 134 (788)
T PLN02859 109 FEEACGVGVVVS-----PEDIEAAVNEVFEE 134 (788)
T ss_pred HHHhCCCCEEEC-----HHHHHHHHHHHHHh
Confidence 334558888886 68888888877653
No 334
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=27.52 E-value=1.2e+02 Score=19.70 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=21.1
Q ss_pred CCccceEEecCChHHHHHHHH------------cCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVY------------HGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~------------~g~P~i~~P~~ 36 (77)
...+|++|.=||. ++++... .++|++.+|..
T Consensus 76 ~~~~d~IiaiGGG-s~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 76 DFKPDIVIALGGG-SAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred hcCCCEEEEECCc-hHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 3468999988776 4444332 14799999975
No 335
>PHA02692 hypothetical protein; Provisional
Probab=27.45 E-value=54 Score=16.72 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=17.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 52 GLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 52 g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
|+-+...+-+.+++.+.++.+|.|+
T Consensus 10 GVFmss~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 10 GSFLSNSDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHcCC
Confidence 4555544446778888888888774
No 336
>PHA03054 IMV membrane protein; Provisional
Probab=27.45 E-value=54 Score=16.78 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=17.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHcCC
Q psy14950 52 GLITPHETITGDILYITIREVLNNP 76 (77)
Q Consensus 52 g~~~~~~~~~~~~l~~~i~~~l~~~ 76 (77)
|+-+...+-+.+++.+.++.+|.|+
T Consensus 10 GvF~ss~d~Df~~Fi~vV~sVl~dk 34 (72)
T PHA03054 10 GVFMGSPEDDLTDFIEIVKSVLSDE 34 (72)
T ss_pred HHhhCCchHHHHHHHHHHHHHHcCC
Confidence 4455544555678888888888775
No 337
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=27.38 E-value=1.3e+02 Score=20.96 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..++++|.|- +.+.+|...++|+|++.
T Consensus 63 ~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 63 KVGVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 45567777763 46778899999999993
No 338
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=27.17 E-value=1.4e+02 Score=19.73 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCccceEEecCChHHHHHHHH---c------CCCEEEeCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVY---H------GVPVVMMPG 35 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~---~------g~P~i~~P~ 35 (77)
.-..|.+|.=||.+|...+.. . ++|++.+|-
T Consensus 90 ~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPk 129 (338)
T cd00363 90 KHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPG 129 (338)
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeee
Confidence 346788999999887765533 2 899999995
No 339
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=27.05 E-value=70 Score=16.08 Aligned_cols=27 Identities=30% Similarity=0.722 Sum_probs=13.7
Q ss_pred ceEEecCChHHHHHHH------HcCCCEEEeCC
Q psy14950 9 KLFITHGGIHSSMEAV------YHGVPVVMMPG 35 (77)
Q Consensus 9 ~~~i~h~G~~t~~e~l------~~g~P~i~~P~ 35 (77)
+.+|-|||..+=.+.+ ..|+|++..|-
T Consensus 33 ~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 33 DMVLVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 4456666652222222 24777776653
No 340
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=27.01 E-value=1.2e+02 Score=19.38 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=21.8
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
..|+++|+.-.. ...=|.+.|+|.|.+
T Consensus 259 ~~a~l~Vs~DSG-p~HlAaA~g~p~v~L 285 (344)
T TIGR02201 259 DHARLFIGVDSV-PMHMAAALGTPLVAL 285 (344)
T ss_pred HhCCEEEecCCH-HHHHHHHcCCCEEEE
Confidence 468889998654 577788899999987
No 341
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=26.97 E-value=1.2e+02 Score=19.99 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.2
Q ss_pred CCccceEEecCChHHHHHHH---H--------------------cCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAV---Y--------------------HGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l---~--------------------~g~P~i~~P~~ 36 (77)
..++|++|.=||. |++.+. + .++|+|.+|..
T Consensus 81 ~~~~D~IIaiGGG-s~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 81 AAGADGVIGFGGG-SSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred hcCCCEEEEeCCc-hHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 3478888888886 343331 1 27899999975
No 342
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=26.86 E-value=18 Score=18.11 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=14.6
Q ss_pred CccceEEecCChHHHHHHH
Q psy14950 6 RNCKLFITHGGIHSSMEAV 24 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l 24 (77)
..+|++++|+|-||-+|-.
T Consensus 23 GGSDLi~h~~~knseleeW 41 (65)
T PF08599_consen 23 GGSDLIAHHAGKNSELEEW 41 (65)
T ss_pred cchhhhhccccccccHHHH
Confidence 4678899999988766653
No 343
>PHA01632 hypothetical protein
Probab=26.85 E-value=81 Score=15.42 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHcC
Q psy14950 58 ETITGDILYITIREVLNN 75 (77)
Q Consensus 58 ~~~~~~~l~~~i~~~l~~ 75 (77)
...+.+++++.+-+++.|
T Consensus 26 ~kpteeelrkvlpkilkd 43 (64)
T PHA01632 26 QKPTEEELRKVLPKILKD 43 (64)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 456788999998888754
No 344
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=26.84 E-value=75 Score=17.48 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=12.9
Q ss_pred HHHHHHcCCCEEEeCCCC
Q psy14950 20 SMEAVYHGVPVVMMPGFS 37 (77)
Q Consensus 20 ~~e~l~~g~P~i~~P~~~ 37 (77)
+..++..++|++++|...
T Consensus 103 ~~~~l~~~~pvvi~P~mn 120 (129)
T PF02441_consen 103 ALAALKEGKPVVIAPAMN 120 (129)
T ss_dssp HHHHHHTTCGEEEEEEES
T ss_pred HHHHccCCCCeEEEEeCC
Confidence 445556699999998543
No 345
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.73 E-value=1.4e+02 Score=19.45 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCccceEEecCChHHHHHH-----HHcCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~ 36 (77)
..++|.+|.=||. +++.. ...++|++.+|..
T Consensus 74 ~~~~D~iIavGGG-s~~D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 74 ENGADVIIGIGGG-KVLDTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred hcCCCEEEEeCCc-HHHHHHHHHHHHhCCCEEEecCc
Confidence 3467888888876 44433 3358999999974
No 346
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=26.71 E-value=1e+02 Score=19.80 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=20.9
Q ss_pred ecCChHHHHHHHHcCCCEEEeCCC
Q psy14950 13 THGGIHSSMEAVYHGVPVVMMPGF 36 (77)
Q Consensus 13 ~h~G~~t~~e~l~~g~P~i~~P~~ 36 (77)
.|+||-+..-+++.+..++.+|-.
T Consensus 171 r~~G~LAl~~ala~~a~~ilipE~ 194 (282)
T PF00365_consen 171 RNAGWLALAAALATGADLILIPEE 194 (282)
T ss_dssp TTSTHHHHHHHHHHTSSEEEBTTS
T ss_pred CCcCHHHHHHHhccCCCEEEEecc
Confidence 478999999999999999999854
No 347
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=26.53 E-value=2e+02 Score=19.12 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=42.8
Q ss_pred ccceEEecCChHHHHHHHHc-----------------CCCEEEeCCCCChHHHHHHHHHhCceee-eCCC---CCCHHHH
Q psy14950 7 NCKLFITHGGIHSSMEAVYH-----------------GVPVVMMPGFSDQHQNCKLMEEKGMGLI-TPHE---TITGDIL 65 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~-----------------g~P~i~~P~~~~q~~na~~~~~~g~g~~-~~~~---~~~~~~l 65 (77)
.++.+++.||..+.+-++.. +.|.+.++...+ .-..+.+.-.|++++ +..+ .++.+++
T Consensus 103 ~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH-~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 103 DAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH-YSIEKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp TSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc-cHHHHhcceeeeEEEEecCCcchhhhHHHh
Confidence 36789999998777766532 356777765443 444555666688854 3332 3678899
Q ss_pred HHHHHHHHcC
Q psy14950 66 YITIREVLNN 75 (77)
Q Consensus 66 ~~~i~~~l~~ 75 (77)
++++.+...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9888876543
No 348
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=26.49 E-value=1.3e+02 Score=19.92 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=20.7
Q ss_pred CccceEEecCChHHHHHHH---H--------------------cCCCEEEeCCC
Q psy14950 6 RNCKLFITHGGIHSSMEAV---Y--------------------HGVPVVMMPGF 36 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l---~--------------------~g~P~i~~P~~ 36 (77)
.++|++|.=||. |++... + .++|+|.+|..
T Consensus 84 ~~~D~IIavGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 84 EGCDFIISIGGG-SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 467888888776 444322 1 36899999974
No 349
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=26.49 E-value=31 Score=18.22 Aligned_cols=16 Identities=44% Similarity=0.750 Sum_probs=12.1
Q ss_pred HHHHcCCCEEEeCCCC
Q psy14950 22 EAVYHGVPVVMMPGFS 37 (77)
Q Consensus 22 e~l~~g~P~i~~P~~~ 37 (77)
+.-+.|+|+++.|...
T Consensus 53 ~G~Y~G~PViV~PI~~ 68 (84)
T PF09884_consen 53 EGPYKGVPVIVAPIKD 68 (84)
T ss_pred CcccCCeeEEEEEEEc
Confidence 3456799999999754
No 350
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=26.37 E-value=43 Score=20.29 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCCEEEeCC
Q psy14950 18 HSSMEAVYHGVPVVMMPG 35 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~P~ 35 (77)
+..+|+...|+|.|.+..
T Consensus 116 gAA~ea~~~GipaIA~S~ 133 (196)
T PF01975_consen 116 GAAMEAALRGIPAIAVSL 133 (196)
T ss_dssp HHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEec
Confidence 457799999999999954
No 351
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.36 E-value=1.2e+02 Score=19.26 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=21.6
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
..|+++|+.-.. -..=|.+.|+|+|.+
T Consensus 250 ~~a~l~I~~DSG-p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 250 ALAKAVVTNDSG-LMHVAAALNRPLVAL 276 (334)
T ss_pred HhCCEEEeeCCH-HHHHHHHcCCCEEEE
Confidence 468889998765 466778899999987
No 352
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=26.34 E-value=1.2e+02 Score=21.17 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=21.8
Q ss_pred CccceEEecCChH------HHHHHHHcCCCEEEeC
Q psy14950 6 RNCKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~~------t~~e~l~~g~P~i~~P 34 (77)
.+..++++|.|-| .+.+|...++|+|++.
T Consensus 77 g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 77 GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455778887753 4678899999999983
No 353
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=26.17 E-value=37 Score=23.09 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCC--ccceEEecCChHHHHHHHHcCCCE
Q psy14950 3 TGHR--NCKLFITHGGIHSSMEAVYHGVPV 30 (77)
Q Consensus 3 l~~~--~~~~~i~h~G~~t~~e~l~~g~P~ 30 (77)
|..| ...++++|-|.|.-.-|+.+|+.+
T Consensus 193 L~k~~~~l~~I~~HLGNGASicAiknGkSv 222 (396)
T COG0282 193 LGKPLEDLNLITCHLGNGASICAIKNGKSV 222 (396)
T ss_pred hCCCccccCEEEEEecCchhhhhhhCCeee
Confidence 4445 678899999999999999999876
No 354
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=26.12 E-value=1.4e+02 Score=19.45 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=22.0
Q ss_pred CCccceEEecCChHHHHHH-----HHcCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~ 36 (77)
..++|++|.=||. ++++. ...++|++.+|..
T Consensus 75 ~~~~d~IIavGGG-s~~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 75 EQEADVIIGVGGG-KTLDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred hcCCCEEEEecCc-HHHHHHHHHHHHcCCCEEEeCCc
Confidence 3468888988876 44433 2359999999974
No 355
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=26.07 E-value=1.4e+02 Score=20.90 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=20.7
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|- +.+.+|...++|+|++.
T Consensus 68 ~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 68 VPGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 44566767663 45678899999999993
No 356
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=25.84 E-value=1.2e+02 Score=19.25 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=22.3
Q ss_pred CccceEEecCChHHHHHHHHc--------CCCEEEeCC
Q psy14950 6 RNCKLFITHGGIHSSMEAVYH--------GVPVVMMPG 35 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~--------g~P~i~~P~ 35 (77)
...|.+|.-||=||+.|.+.. ..|+-++|.
T Consensus 51 ~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 51 LGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred cCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 345889999999998887631 246788885
No 357
>PRK10799 metal-binding protein; Provisional
Probab=25.78 E-value=1.7e+02 Score=18.18 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=22.8
Q ss_pred ceEEecCChH-HHHHHHHcCCCEEEeCCCCChHHHHHHHHHhCceeeeC
Q psy14950 9 KLFITHGGIH-SSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITP 56 (77)
Q Consensus 9 ~~~i~h~G~~-t~~e~l~~g~P~i~~P~~~~q~~na~~~~~~g~g~~~~ 56 (77)
++.|+-|+.+ .+.++...|.=.++-....+ ..+..+.+.|+.+..-
T Consensus 167 rVAi~~GsG~~~i~~a~~~gaD~~ITGd~k~--h~~~~A~~~gl~li~~ 213 (247)
T PRK10799 167 RVAWCTGGGQSFIDSAARFGVDAFITGEVSE--QTIHSAREQGLHFYAA 213 (247)
T ss_pred EEEEECCchHHHHHHHHHcCCCEEEECCcch--HHHHHHHHCCCeEEEc
Confidence 3555544443 34456666766655432221 1234445667775443
No 358
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=25.75 E-value=1.4e+02 Score=18.32 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=21.4
Q ss_pred CCccceEEecCChHHHH--------------HHHHcCCCEEEe
Q psy14950 5 HRNCKLFITHGGIHSSM--------------EAVYHGVPVVMM 33 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~--------------e~l~~g~P~i~~ 33 (77)
...+|..|-.||-+|++ +.+..|+|+..-
T Consensus 36 L~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GT 78 (194)
T COG0311 36 LEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGT 78 (194)
T ss_pred hccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEe
Confidence 35689999999987765 445568888764
No 359
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=25.52 E-value=1.1e+02 Score=21.15 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCCCCccceEEecCChHHHHHHHHcCCCEEEe
Q psy14950 2 PTGHRNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 2 ~l~~~~~~~~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
++.||..|.++-.||......+-..++|.+..
T Consensus 182 L~~~~~vd~V~fTGs~~v~~~a~~~~~pv~~e 213 (488)
T TIGR02518 182 LMKNKDTSLILATGGEAMVKAAYSSGTPAIGV 213 (488)
T ss_pred HHhCCCcCEEEEeCCHHHHHHHHHcCCCEEEE
Confidence 45789999999999988665565678888754
No 360
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=25.29 E-value=1.5e+02 Score=17.18 Aligned_cols=27 Identities=11% Similarity=0.353 Sum_probs=19.3
Q ss_pred cceEEecCCh----HHHHHHH-HcCCCEEEeC
Q psy14950 8 CKLFITHGGI----HSSMEAV-YHGVPVVMMP 34 (77)
Q Consensus 8 ~~~~i~h~G~----~t~~e~l-~~g~P~i~~P 34 (77)
.-++..+.|. +.+.++. ..++|++++-
T Consensus 60 ~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 60 PAILMQSSGLGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred cEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3367777775 4455666 8899999985
No 361
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=25.27 E-value=1.2e+02 Score=21.36 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=21.4
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..++++|.|- +.+.+|...++|+|++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 109 (585)
T CHL00099 76 KVGVCFATSGPGATNLVTGIATAQMDSVPLLVIT 109 (585)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 45567777664 46778889999999994
No 362
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=24.96 E-value=1.5e+02 Score=19.35 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=21.5
Q ss_pred ccceEEecCChHHHHHH-----HHcCCCEEEeCCC
Q psy14950 7 NCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~ 36 (77)
++|++|.=||. +++.. ...++|++.+|..
T Consensus 80 ~~d~IIaIGGG-s~~D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 80 DTDLIIAVGSG-TINDITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred cCCEEEEECCc-HHHHHHHHHHHhcCCCEEEecCc
Confidence 78999988886 34433 3358999999975
No 363
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=24.88 E-value=1.4e+02 Score=20.74 Aligned_cols=27 Identities=15% Similarity=0.237 Sum_probs=20.9
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..+++.|.|. +.+.+|...++|+|++
T Consensus 64 kpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i 96 (549)
T PRK06457 64 KPSACMGTSGPGSIHLLNGLYDAKMDHAPVIAL 96 (549)
T ss_pred CCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEE
Confidence 45567777773 4567888999999998
No 364
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=24.80 E-value=1.5e+02 Score=20.74 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=21.6
Q ss_pred CccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 6 RNCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 6 ~~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
.+..++++|.|- +.+.+|...++|+|++
T Consensus 70 g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 70 GRPGICFVTRGPGATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEE
Confidence 345677888774 4567888999999998
No 365
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=24.71 E-value=1.6e+02 Score=20.62 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=20.9
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++++.|- +.+.+|...++|+|++.
T Consensus 76 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 76 KPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44566777663 46778889999999983
No 366
>PRK05858 hypothetical protein; Provisional
Probab=24.70 E-value=1.6e+02 Score=20.53 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=20.5
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|- +.+.+|...++|+|++.
T Consensus 67 ~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 67 VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred CCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 34456666663 56778889999999984
No 367
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=24.65 E-value=2.3e+02 Score=19.25 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCEEEe---CCCCChHHHHHHHHHhCceeee-CCCCCC-HHHHHHHHHHHHcC
Q psy14950 19 SSMEAVYHGVPVVMM---PGFSDQHQNCKLMEEKGMGLIT-PHETIT-GDILYITIREVLNN 75 (77)
Q Consensus 19 t~~e~l~~g~P~i~~---P~~~~q~~na~~~~~~g~g~~~-~~~~~~-~~~l~~~i~~~l~~ 75 (77)
|..-+..+|.+.++. -...-|..|..++.-+|+-++- ....-+ .+.+-+++|.+..+
T Consensus 119 tAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn 180 (396)
T COG0133 119 TATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTN 180 (396)
T ss_pred HHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhc
Confidence 334445567777665 1234688999999988987763 332212 45566666666543
No 368
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=24.59 E-value=35 Score=19.77 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=35.1
Q ss_pred ccceEEecCChHHHHHHHHcCCCEEEeCCC--------CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 7 NCKLFITHGGIHSSMEAVYHGVPVVMMPGF--------SDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 7 ~~~~~i~h~G~~t~~e~l~~g~P~i~~P~~--------~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
.++.-|++..-..+++-+....+.+.+|-. .+|..+.+.-..+-.|......-..+..-...++.+|+
T Consensus 63 ~~~~GVs~~~V~el~~~~r~~~R~VtVPA~lLe~vl~~A~~~L~~~~~~a~~~~~~~p~~v~~~~~~~~~~r~ll~ 138 (139)
T PF07128_consen 63 RHEEGVSSGTVMELIREVRRAARQVTVPADLLERVLRLAEQALWKREWAAWDAGRPVPESVTRRLADIAQVRALLK 138 (139)
T ss_pred chhccccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 345556654434444445556689999842 35555555555555555444321122333345555554
No 369
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=24.57 E-value=2e+02 Score=18.43 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=12.6
Q ss_pred CChHHHHHHHHcCCCEEEe-CCCC
Q psy14950 15 GGIHSSMEAVYHGVPVVMM-PGFS 37 (77)
Q Consensus 15 ~G~~t~~e~l~~g~P~i~~-P~~~ 37 (77)
-|..-+.+++..|.++|++ ++++
T Consensus 120 ~g~e~l~~a~a~gkgvIllt~H~G 143 (308)
T PRK06553 120 RGIEIFERLRDDGKPALIFTAHLG 143 (308)
T ss_pred cCHHHHHHHHhcCCCEEEEeeCch
Confidence 3444455556666666665 4433
No 370
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=24.52 E-value=32 Score=22.44 Aligned_cols=61 Identities=11% Similarity=0.269 Sum_probs=33.4
Q ss_pred EecCChHH-HHHHHHcCCCEEEe----CC--------------CCChHHHHHHHHHhC-----ceeeeCCCCCCHHHHHH
Q psy14950 12 ITHGGIHS-SMEAVYHGVPVVMM----PG--------------FSDQHQNCKLMEEKG-----MGLITPHETITGDILYI 67 (77)
Q Consensus 12 i~h~G~~t-~~e~l~~g~P~i~~----P~--------------~~~q~~na~~~~~~g-----~g~~~~~~~~~~~~l~~ 67 (77)
++|+++.+ .++.+.-+.|--++ |. ..+....-..+.... +|+.++.+.++.++..+
T Consensus 197 L~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~e~~~ 276 (301)
T PF07755_consen 197 LSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEEEAKA 276 (301)
T ss_dssp TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCCGC---EEEEEECC-TTS-HHHHHH
T ss_pred ccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHHHHHH
Confidence 45777666 66777766665443 31 112222222333333 57889999999888888
Q ss_pred HHHHH
Q psy14950 68 TIREV 72 (77)
Q Consensus 68 ~i~~~ 72 (77)
.++++
T Consensus 277 ~~~~~ 281 (301)
T PF07755_consen 277 AIERI 281 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 371
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=24.47 E-value=1.5e+02 Score=19.65 Aligned_cols=31 Identities=26% Similarity=0.658 Sum_probs=21.3
Q ss_pred CCccceEEecCChHHHHHH---HH--------------------cCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEA---VY--------------------HGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~---l~--------------------~g~P~i~~P~~ 36 (77)
...+|.+|.=||. |++.+ +. .++|++.+|..
T Consensus 78 ~~~~D~IIaiGGG-S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 78 EGGCDVIIALGGG-SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred hcCCCEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 3567888888776 44443 22 36899999975
No 372
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=24.42 E-value=98 Score=21.47 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=19.1
Q ss_pred ceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 9 KLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 9 ~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
.+++.+.|. +.+.+|...++|+|++.
T Consensus 65 gv~~~t~GPG~~n~~~gla~A~~d~~Pvl~I~ 96 (539)
T TIGR03393 65 AALLTTFGVGELSAINGIAGSYAEHLPVIHIV 96 (539)
T ss_pred eEEEEecCccHHHHhhHHHHHhhccCCEEEEE
Confidence 345555554 46789999999999984
No 373
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.39 E-value=1.4e+02 Score=21.00 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=20.8
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..+++.|.|- +.+.+|...++|+|++
T Consensus 67 ~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i 99 (574)
T PRK07979 67 EVGVVLVTSGPGATNAITGIATAYMDSIPLVVL 99 (574)
T ss_pred CceEEEECCCccHhhhHHHHHHHhhcCCCEEEE
Confidence 45567777774 3467888999999999
No 374
>KOG1465|consensus
Probab=24.30 E-value=1.1e+02 Score=20.37 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEecCChHHHHHHH-HcCCCEEEe-CC
Q psy14950 11 FITHGGIHSSMEAV-YHGVPVVMM-PG 35 (77)
Q Consensus 11 ~i~h~G~~t~~e~l-~~g~P~i~~-P~ 35 (77)
++..+|..++..+. .+.+|++++ |+
T Consensus 247 l~~~~G~~~vAlaAk~h~vPv~VlAp~ 273 (353)
T KOG1465|consen 247 LRAPSGVHTVALAAKHHSVPVIVLAPM 273 (353)
T ss_pred eeccchHHHHHHHHHhcCCcEEEecch
Confidence 56777888888776 479999998 54
No 375
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.29 E-value=1.4e+02 Score=19.23 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=21.1
Q ss_pred CccceEEecCChHHHHHHHHcCCCEEEe
Q psy14950 6 RNCKLFITHGGIHSSMEAVYHGVPVVMM 33 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~l~~g~P~i~~ 33 (77)
..|+++|+.-.. -+.=|.+.|+|++.+
T Consensus 260 ~~a~l~I~nDTG-p~HlAaA~g~P~val 286 (348)
T PRK10916 260 AACKAIVTNDSG-LMHVAAALNRPLVAL 286 (348)
T ss_pred HhCCEEEecCCh-HHHHHHHhCCCEEEE
Confidence 457888888654 466778889999987
No 376
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=24.27 E-value=1.6e+02 Score=20.62 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=20.5
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..+++.|.|- +.+.+|...++|+|++
T Consensus 70 ~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i 102 (561)
T PRK06048 70 KVGVCVATSGPGATNLVTGIATAYMDSVPIVAL 102 (561)
T ss_pred CCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEE
Confidence 34567777663 5677889999999998
No 377
>PRK06349 homoserine dehydrogenase; Provisional
Probab=24.23 E-value=89 Score=21.19 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=31.1
Q ss_pred CCCCCccceEEec-CC----hHHHHHHHHcCCCEEEe-C-CCCCh-HHHHHHHHHhCceeeeC
Q psy14950 2 PTGHRNCKLFITH-GG----IHSSMEAVYHGVPVVMM-P-GFSDQ-HQNCKLMEEKGMGLITP 56 (77)
Q Consensus 2 ~l~~~~~~~~i~h-~G----~~t~~e~l~~g~P~i~~-P-~~~~q-~~na~~~~~~g~g~~~~ 56 (77)
++..+..|+++-- +| .--+.+++..|+.+++- | ...++ ....+...+.|+-+..+
T Consensus 67 ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fE 129 (426)
T PRK06349 67 LVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFE 129 (426)
T ss_pred HhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 4566788888743 22 23345889999999985 3 11222 23333344556654443
No 378
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=24.05 E-value=1e+02 Score=18.37 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHcCC
Q psy14950 58 ETITGDILYITIREVLNNP 76 (77)
Q Consensus 58 ~~~~~~~l~~~i~~~l~~~ 76 (77)
..++.+.|..+|.+.|++|
T Consensus 138 ~FIT~ENLd~~IeeALdnp 156 (170)
T PF14943_consen 138 NFITRENLDAAIEEALDNP 156 (170)
T ss_pred CcCCHHhHHHHHHHHHcCC
Confidence 4578999999999999886
No 379
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=24.01 E-value=2.1e+02 Score=18.58 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=31.6
Q ss_pred cceEEecCChHHHHHHHH----cCCCEEEe-----CCCCChHHHHHHHHHhCceeeeC
Q psy14950 8 CKLFITHGGIHSSMEAVY----HGVPVVMM-----PGFSDQHQNCKLMEEKGMGLITP 56 (77)
Q Consensus 8 ~~~~i~h~G~~t~~e~l~----~g~P~i~~-----P~~~~q~~na~~~~~~g~g~~~~ 56 (77)
-+.++|||-.+|+...+. .|+++-++ |. .+-...+..+.+.|+-+.+-
T Consensus 121 g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~-~~G~~~a~~L~~~GI~vtlI 177 (310)
T PRK08535 121 GDVIMTHCNSSAALSVIKTAHEQGKDIEVIATETRPR-NQGHITAKELAEYGIPVTLI 177 (310)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCch-hhHHHHHHHHHHCCCCEEEE
Confidence 457999999888765554 56666443 32 23356788888888766554
No 380
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=23.82 E-value=68 Score=19.32 Aligned_cols=55 Identities=20% Similarity=0.121 Sum_probs=31.5
Q ss_pred CCCccceEEecCChH--HHHHHHHc--CCCEEEe------------CCCCChHHHHHHHHHhCceeeeCCC
Q psy14950 4 GHRNCKLFITHGGIH--SSMEAVYH--GVPVVMM------------PGFSDQHQNCKLMEEKGMGLITPHE 58 (77)
Q Consensus 4 ~~~~~~~~i~h~G~~--t~~e~l~~--g~P~i~~------------P~~~~q~~na~~~~~~g~g~~~~~~ 58 (77)
.+|+..+++.|+|.. ...+.+.. ..|-+.+ +...........+...|....+-.+
T Consensus 161 ~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~g~drilfGS 231 (273)
T PF04909_consen 161 RFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEFGPDRILFGS 231 (273)
T ss_dssp HSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHHTGGGEEEE-
T ss_pred HhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCcccccHHHHHHHHHHhCCceEEecC
Confidence 578999999999998 33333322 3343332 2223444555556666776665443
No 381
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=23.77 E-value=1.7e+02 Score=19.21 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=20.6
Q ss_pred CccceEEecCChHHHHHH---H----HcCCCEEEeCCC
Q psy14950 6 RNCKLFITHGGIHSSMEA---V----YHGVPVVMMPGF 36 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~~e~---l----~~g~P~i~~P~~ 36 (77)
.++|++|.=||.. +... + ..|+|++.+|..
T Consensus 82 ~r~d~IIaiGGGs-v~D~ak~vA~~~~rgip~i~VPTT 118 (344)
T cd08169 82 NRRTAIVAVGGGA-TGDVAGFVASTLFRGIAFIRVPTT 118 (344)
T ss_pred CCCcEEEEECCcH-HHHHHHHHHHHhccCCcEEEecCC
Confidence 4588899888752 3222 2 349999999974
No 382
>PRK11269 glyoxylate carboligase; Provisional
Probab=23.72 E-value=1.6e+02 Score=20.78 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=21.2
Q ss_pred ccceEEecCC------hHHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGG------IHSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G------~~t~~e~l~~g~P~i~~P 34 (77)
+..+++.+.| .+.+.+|...++|+|++.
T Consensus 68 ~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 68 NIGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4556666666 466789999999999983
No 383
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=23.51 E-value=1.6e+02 Score=20.60 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=20.9
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..++++|.|- +.+.+|...++|+|++.
T Consensus 73 ~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 73 KLGVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34567777774 45678888999999993
No 384
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=23.48 E-value=1.7e+02 Score=19.03 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCccceEEecCChHHHHHH-----HHcCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEA-----VYHGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~-----l~~g~P~i~~P~~ 36 (77)
...+|++|.=||. ++... ...|+|+|.+|..
T Consensus 76 ~~~~d~iIaiGGG-s~~D~aK~~a~~~~~p~i~iPTT 111 (339)
T cd08173 76 DIGADFVIGVGGG-RVIDVAKVAAYKLGIPFISVPTA 111 (339)
T ss_pred hcCCCEEEEeCCc-hHHHHHHHHHHhcCCCEEEecCc
Confidence 3468889988875 33332 3458999999974
No 385
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=23.45 E-value=1.7e+02 Score=20.63 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=21.4
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|- +.+.++...++|+|++.
T Consensus 63 k~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~ 96 (575)
T TIGR02720 63 KIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALV 96 (575)
T ss_pred CceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 45567777774 46778899999999993
No 386
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=23.41 E-value=1.7e+02 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=21.0
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..++++|.|- +.+.+|...++|+|++.
T Consensus 63 ~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 63 KVGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34567777663 56778999999999983
No 387
>COG5155 ESP1 Separase, a protease involved in sister chromatid separation [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=1.9e+02 Score=22.91 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=34.0
Q ss_pred hHHHHHHHHcCCCEEEeCCCC----C-hHHHHHHHHHhCceeeeCCCCCCHHHHHHHHH
Q psy14950 17 IHSSMEAVYHGVPVVMMPGFS----D-QHQNCKLMEEKGMGLITPHETITGDILYITIR 70 (77)
Q Consensus 17 ~~t~~e~l~~g~P~i~~P~~~----~-q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~ 70 (77)
+||++.-+..|.||++.-.|. | -.+-++.++++|.+-.-.. ..+.-.+-.|+.
T Consensus 1538 ~Gtil~yL~~GcpmvvgnLWDVTDKDID~FS~~i~es~g~~cns~~-~~NS~Sv~~AVS 1595 (1622)
T COG5155 1538 NGTILKYLRRGCPMVVGNLWDVTDKDIDSFSARIIESLGSGCNSLG-ELNSLSVSYAVS 1595 (1622)
T ss_pred CCcHHHHHhcCCCeeeeeccccccccHHHHHHHHHHHhcccccccc-cccchhhhhhhh
Confidence 578888899999999987763 2 2355666788887765443 223344444443
No 388
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=23.20 E-value=2.4e+02 Score=18.78 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=27.5
Q ss_pred eEEecC--------ChHHHHHHH----HcCCCEEEe-C--CCCChH--HHHHHHHHhCceeeeC
Q psy14950 10 LFITHG--------GIHSSMEAV----YHGVPVVMM-P--GFSDQH--QNCKLMEEKGMGLITP 56 (77)
Q Consensus 10 ~~i~h~--------G~~t~~e~l----~~g~P~i~~-P--~~~~q~--~na~~~~~~g~g~~~~ 56 (77)
.++||| |++|....+ ..|+.+-++ . ....|. ..+..+.+.|+-+.+-
T Consensus 149 ~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI 212 (331)
T TIGR00512 149 RVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLI 212 (331)
T ss_pred eEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEE
Confidence 688985 455655444 367665443 1 223343 4577888888766543
No 389
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=23.16 E-value=87 Score=20.15 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=16.6
Q ss_pred EEecCChHHHHHHHHcCCCEEEeC
Q psy14950 11 FITHGGIHSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 11 ~i~h~G~~t~~e~l~~g~P~i~~P 34 (77)
.|+=+|+--+.++...|.+++.+|
T Consensus 85 ~ISDPG~~LV~~~~~~~i~v~~ip 108 (276)
T TIGR00096 85 LISDPGHLLVACREKANIIVVPLP 108 (276)
T ss_pred CcCCccHHHHHHHHHCCCeEEcCC
Confidence 355566666777777787777776
No 390
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.13 E-value=1.6e+02 Score=20.61 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=21.1
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|- +.+.+|...++|+|++.
T Consensus 67 ~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 67 KTGVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 44567777663 46778889999999993
No 391
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=23.03 E-value=1.5e+02 Score=19.71 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=21.1
Q ss_pred CCccceEEecCChHHHHHHHH-------------------------cCCCEEEeCCC
Q psy14950 5 HRNCKLFITHGGIHSSMEAVY-------------------------HGVPVVMMPGF 36 (77)
Q Consensus 5 ~~~~~~~i~h~G~~t~~e~l~-------------------------~g~P~i~~P~~ 36 (77)
..++|++|.=||. |++.... .++|+|.+|..
T Consensus 85 ~~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTT 140 (382)
T PRK10624 85 ASGADYLIAIGGG-SPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTT 140 (382)
T ss_pred hcCCCEEEEeCCh-HHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCC
Confidence 3468888888775 4444331 25899999975
No 392
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=23.01 E-value=2.1e+02 Score=18.11 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=32.8
Q ss_pred CCCCCccceEEecCC----hHHHHHHHHcCCCEEEe-CCCCChH---HHHHHHHHhCceeeeC
Q psy14950 2 PTGHRNCKLFITHGG----IHSSMEAVYHGVPVVMM-PGFSDQH---QNCKLMEEKGMGLITP 56 (77)
Q Consensus 2 ~l~~~~~~~~i~h~G----~~t~~e~l~~g~P~i~~-P~~~~q~---~na~~~~~~g~g~~~~ 56 (77)
+|..+..|+++-..- .-.+..++..|+++++= |+...-. ...+..++.|.-+.+.
T Consensus 62 ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~ 124 (342)
T COG0673 62 LLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVG 124 (342)
T ss_pred HhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 466777787665443 34567889999999884 8764322 2333334445444433
No 393
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=22.99 E-value=1.8e+02 Score=20.32 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=20.8
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..++++|.|- +.+.+|...++|+|++
T Consensus 64 ~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i 96 (558)
T TIGR00118 64 KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVF 96 (558)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 34567777663 5677899999999999
No 394
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=22.98 E-value=1.7e+02 Score=20.49 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=20.6
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|- +.+.+|...++|+|++.
T Consensus 72 ~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 105 (569)
T PRK09259 72 KPGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 105 (569)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEE
Confidence 44567777663 45778889999999983
No 395
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.93 E-value=2.2e+02 Score=18.96 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=33.5
Q ss_pred CCEEEeCCC-CChHHHHHHHHHhCceeeeCCCCCCHHHHHHHHHHH
Q psy14950 28 VPVVMMPGF-SDQHQNCKLMEEKGMGLITPHETITGDILYITIREV 72 (77)
Q Consensus 28 ~P~i~~P~~-~~q~~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~ 72 (77)
.|+..=+.. ..-...+++..++|+-+.+...+++.+++.+..+++
T Consensus 114 l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 114 LPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred CcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 666555432 345567778889998888888899999999877765
No 396
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=22.88 E-value=1.6e+02 Score=20.72 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=20.9
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..++++|.|- +.+.+|...++|+|++.
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45567777663 45668888999999994
No 397
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=22.83 E-value=2.2e+02 Score=18.25 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCEEEeCCC
Q psy14950 18 HSSMEAVYHGVPVVMMPGF 36 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~P~~ 36 (77)
+..+|+..+|+|.|.+.+.
T Consensus 108 aaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 108 AAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HHHHHHHHcCccceeeeeh
Confidence 6678999999999999764
No 398
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.77 E-value=2.4e+02 Score=18.76 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=28.0
Q ss_pred cceEEecCCh--------HHHH----HHHHcCCCEEEeC---CCCCh--HHHHHHHHHhCceeeeC
Q psy14950 8 CKLFITHGGI--------HSSM----EAVYHGVPVVMMP---GFSDQ--HQNCKLMEEKGMGLITP 56 (77)
Q Consensus 8 ~~~~i~h~G~--------~t~~----e~l~~g~P~i~~P---~~~~q--~~na~~~~~~g~g~~~~ 56 (77)
-+.++|||-. ||.. .+...|+-+-++. ....| ...+..+.+.|+-+.+-
T Consensus 137 g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI 202 (329)
T PRK06371 137 GARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAII 202 (329)
T ss_pred CCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEE
Confidence 3468898832 3333 3445677655541 12334 35688888888766543
No 399
>COG3150 Predicted esterase [General function prediction only]
Probab=22.71 E-value=1.1e+02 Score=18.70 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=25.6
Q ss_pred EEecCChHHHHHHHHcCCCEEEe-CCCCChHHHHHHH
Q psy14950 11 FITHGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCKLM 46 (77)
Q Consensus 11 ~i~h~G~~t~~e~l~~g~P~i~~-P~~~~q~~na~~~ 46 (77)
-.+=||+-+..=+..+|.|.+++ |-...+...+.++
T Consensus 65 GssLGGY~At~l~~~~Girav~~NPav~P~e~l~gyl 101 (191)
T COG3150 65 GSSLGGYYATWLGFLCGIRAVVFNPAVRPYELLTGYL 101 (191)
T ss_pred eecchHHHHHHHHHHhCChhhhcCCCcCchhhhhhhc
Confidence 34567777888888999999998 7655555555544
No 400
>PRK08611 pyruvate oxidase; Provisional
Probab=22.59 E-value=1.7e+02 Score=20.61 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=20.7
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..++++|.|. +.+.+|...++|+|++
T Consensus 68 ~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~I 100 (576)
T PRK08611 68 KIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLAL 100 (576)
T ss_pred CceEEEECCCCcHHHHHHHHHHHhhcCCCEEEE
Confidence 45567777663 4567889999999999
No 401
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.59 E-value=1.7e+02 Score=20.65 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=20.5
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..+++.|.|- +.+.+|...++|+|++
T Consensus 77 ~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I 109 (570)
T PRK06725 77 KVGVVFATSGPGATNLVTGLADAYMDSIPLVVI 109 (570)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCcCEEEE
Confidence 45567777774 3467888899999998
No 402
>PRK08617 acetolactate synthase; Reviewed
Probab=22.52 E-value=1.8e+02 Score=20.29 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=21.2
Q ss_pred CccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 6 RNCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
.+..+++.|.|- +.+.+|...++|+|++.
T Consensus 66 g~~gv~~vt~GpG~~N~l~gl~~A~~~~~Pvlvis 100 (552)
T PRK08617 66 GKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIG 100 (552)
T ss_pred CCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEe
Confidence 344567777663 45778889999999983
No 403
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=22.47 E-value=1.6e+02 Score=20.57 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=20.7
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.+.|- +.+.+|...++|+|++.
T Consensus 72 ~~~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 72 RPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred CCEEEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 34456676663 46778889999999994
No 404
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.41 E-value=1.8e+02 Score=20.66 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=21.0
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|- +.+.+|...++|+|++.
T Consensus 74 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~ 107 (595)
T PRK09107 74 KPGVVLVTSGPGATNAVTPLQDALMDSIPLVCIT 107 (595)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEE
Confidence 44567777664 46678888999999983
No 405
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=22.15 E-value=1.8e+02 Score=20.62 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=21.1
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..+++.|.|- +.+++|...++|+|++
T Consensus 85 k~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i 117 (616)
T PRK07418 85 KVGVCFGTSGPGATNLVTGIATAQMDSVPMVVI 117 (616)
T ss_pred CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 45567777773 5677889999999998
No 406
>PRK07524 hypothetical protein; Provisional
Probab=22.04 E-value=1.9e+02 Score=20.01 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=20.7
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEe
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~ 33 (77)
+..+++.|.|. +.+.+|...++|+|++
T Consensus 64 ~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i 96 (535)
T PRK07524 64 KPGVCFIITGPGMTNIATAMGQAYADSIPMLVI 96 (535)
T ss_pred CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 44567777674 4677888999999998
No 407
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=22.02 E-value=1.8e+02 Score=20.15 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=21.0
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|- +.+.+|...++|+|++.
T Consensus 61 ~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~ 94 (539)
T TIGR02418 61 KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIG 94 (539)
T ss_pred CceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEe
Confidence 45567777773 45678888999999993
No 408
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.00 E-value=2.2e+02 Score=18.01 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=28.0
Q ss_pred HHHHHHHcCCC---EEEeCCCCChHHHHHHHHHhCceeeeCCC
Q psy14950 19 SSMEAVYHGVP---VVMMPGFSDQHQNCKLMEEKGMGLITPHE 58 (77)
Q Consensus 19 t~~e~l~~g~P---~i~~P~~~~q~~na~~~~~~g~g~~~~~~ 58 (77)
++-.+...|.| +|..--.+.+..|...+.++++...+..+
T Consensus 163 ~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~ 205 (256)
T TIGR00715 163 ALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKA 205 (256)
T ss_pred hhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 45556666776 45442235678899999999999888764
No 409
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.97 E-value=1.7e+02 Score=20.59 Aligned_cols=28 Identities=14% Similarity=0.340 Sum_probs=21.0
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|- +.+.+|...++|+|++.
T Consensus 67 ~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 67 KVGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 45567777774 45678889999999983
No 410
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=21.94 E-value=2.5e+02 Score=18.71 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=28.6
Q ss_pred cceEEecCC--------hHHHH----HHHHcCCCEEEe-----CCCCChHHHHHHHHHhCceeeeC
Q psy14950 8 CKLFITHGG--------IHSSM----EAVYHGVPVVMM-----PGFSDQHQNCKLMEEKGMGLITP 56 (77)
Q Consensus 8 ~~~~i~h~G--------~~t~~----e~l~~g~P~i~~-----P~~~~q~~na~~~~~~g~g~~~~ 56 (77)
-+.++|||- +||.. ++...|+.+-++ |...-....+..+.+.|+-+.+-
T Consensus 147 g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI 212 (344)
T PRK05720 147 GQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVI 212 (344)
T ss_pred CCEEEEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEE
Confidence 346888874 44433 344457776554 33222335678888888766554
No 411
>PRK07586 hypothetical protein; Validated
Probab=21.90 E-value=1.7e+02 Score=20.08 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=19.3
Q ss_pred ccceEEecCChH------HHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGIH------SSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~~------t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|-| .+.+|...++|+|++.
T Consensus 64 ~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 64 KPAATLLHLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred CCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344566676643 2346888999999984
No 412
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.70 E-value=2e+02 Score=17.39 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHhCceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 41 QNCKLMEEKGMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 41 ~na~~~~~~g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
.|+.+.++.|.--++--+..+.+++..+..+=+.
T Consensus 112 LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~ 145 (176)
T COG3195 112 LNAAYVERFGFPFIIAVKGNTKDTILAAFERRLD 145 (176)
T ss_pred HHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhc
Confidence 5667777777655554445555665555544333
No 413
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.64 E-value=2.1e+02 Score=17.69 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=34.6
Q ss_pred eEEecCChH--HHHHHHHcCCC--EEEeCCCC-ChHHHHHHHHHhCcee-eeCCCCC-CHHHHHHHHHHHHcC
Q psy14950 10 LFITHGGIH--SSMEAVYHGVP--VVMMPGFS-DQHQNCKLMEEKGMGL-ITPHETI-TGDILYITIREVLNN 75 (77)
Q Consensus 10 ~~i~h~G~~--t~~e~l~~g~P--~i~~P~~~-~q~~na~~~~~~g~g~-~~~~~~~-~~~~l~~~i~~~l~~ 75 (77)
+++|..|.| .+.+++..|.. -|..-... ..-.-..+..+.|+-. .++.++. +++++..++.+.+..
T Consensus 5 VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~ 77 (200)
T COG0299 5 VLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE 77 (200)
T ss_pred EEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence 456655543 34444444432 12211112 2344556677778865 3565554 477788877776643
No 414
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=21.56 E-value=1.7e+02 Score=19.28 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=9.8
Q ss_pred CCccceEEecCCh
Q psy14950 5 HRNCKLFITHGGI 17 (77)
Q Consensus 5 ~~~~~~~i~h~G~ 17 (77)
..++|++|.=||.
T Consensus 73 ~~~~D~IIaiGGG 85 (374)
T cd08183 73 NAGCDVVIAIGGG 85 (374)
T ss_pred hcCCCEEEEecCc
Confidence 3468888888886
No 415
>PLN00011 cysteine synthase
Probab=21.38 E-value=2.4e+02 Score=18.24 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=34.0
Q ss_pred CccceEEecCChHHH----HHHHHcCCCEEEe-CCCCChHHHHHHHHHhCceeeeCCCC
Q psy14950 6 RNCKLFITHGGIHSS----MEAVYHGVPVVMM-PGFSDQHQNCKLMEEKGMGLITPHET 59 (77)
Q Consensus 6 ~~~~~~i~h~G~~t~----~e~l~~g~P~i~~-P~~~~q~~na~~~~~~g~g~~~~~~~ 59 (77)
|.++.+|+..+.|.- +-+...|.|..++ |.... ..+.+++..+|+-+.+....
T Consensus 67 ~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~k~~~i~~~GA~V~~~~~~ 124 (323)
T PLN00011 67 PGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMS-LERRIILRALGAEVHLTDQS 124 (323)
T ss_pred CCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEECCC
Confidence 335556665544332 3344579999876 76555 47788888899888765433
No 416
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.34 E-value=2.8e+02 Score=19.01 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHcCCCEEEeCCC-CChHHHHHHHHHh-CceeeeCCCCCCHHHHHHHHHHHHc
Q psy14950 20 SMEAVYHGVPVVMMPGF-SDQHQNCKLMEEK-GMGLITPHETITGDILYITIREVLN 74 (77)
Q Consensus 20 ~~e~l~~g~P~i~~P~~-~~q~~na~~~~~~-g~g~~~~~~~~~~~~l~~~i~~~l~ 74 (77)
+.+.+....|++.-|+. .-....|..+.+. |+|+. .. ..+.+++.+.++++-.
T Consensus 35 lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI-~~-~~~~e~l~~eI~~vk~ 89 (404)
T PRK06843 35 LTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGII-HK-NMSIEAQRKEIEKVKT 89 (404)
T ss_pred hhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEe-cC-CCCHHHHHHHHHHHHh
Confidence 44677789999998875 3456677777777 56754 43 6789999988887754
No 417
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=21.22 E-value=2.2e+02 Score=17.70 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=21.9
Q ss_pred cceEEecCC--hHHHHHHHHcCCCEEEeCCC
Q psy14950 8 CKLFITHGG--IHSSMEAVYHGVPVVMMPGF 36 (77)
Q Consensus 8 ~~~~i~h~G--~~t~~e~l~~g~P~i~~P~~ 36 (77)
=|++|...+ .....+-+..+.|++.+|..
T Consensus 116 PDlIi~~~~~~~~~~~~~~~~~~pvv~~~~~ 146 (319)
T COG0614 116 PDLIIASSSSQDDLIYKLLSLGAPVVVVDYG 146 (319)
T ss_pred CCEEEEecccchhHHHHHHhcCCCEEEECCc
Confidence 467777765 45578888899999999765
No 418
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=20.90 E-value=2e+02 Score=20.08 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=20.7
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..++++|.|- +.+.+|...++|+|++.
T Consensus 65 ~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~ 98 (554)
T TIGR03254 65 KPGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 98 (554)
T ss_pred CCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEE
Confidence 45567777663 45678888999999983
No 419
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.84 E-value=2.6e+02 Score=18.34 Aligned_cols=63 Identities=5% Similarity=0.005 Sum_probs=40.5
Q ss_pred ecCChHHHHHHHHcCCCEEEeCCCC-----------------------------ChHHHHHHHHHhCceeeeCCCCCCHH
Q psy14950 13 THGGIHSSMEAVYHGVPVVMMPGFS-----------------------------DQHQNCKLMEEKGMGLITPHETITGD 63 (77)
Q Consensus 13 ~h~G~~t~~e~l~~g~P~i~~P~~~-----------------------------~q~~na~~~~~~g~g~~~~~~~~~~~ 63 (77)
.++|...+..++..+.|++++-... ...+....+...|+.-+-...-.+..
T Consensus 105 ~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~ 184 (300)
T PRK11864 105 ADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPE 184 (300)
T ss_pred ccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHH
Confidence 6888888889999999998874311 11223334455676444333334678
Q ss_pred HHHHHHHHHHcC
Q psy14950 64 ILYITIREVLNN 75 (77)
Q Consensus 64 ~l~~~i~~~l~~ 75 (77)
++.+++++.++.
T Consensus 185 ~~~~~i~~A~~~ 196 (300)
T PRK11864 185 DFIRKLKKAKEI 196 (300)
T ss_pred HHHHHHHHHHhC
Confidence 888888887653
No 420
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=20.74 E-value=1.9e+02 Score=20.35 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=21.6
Q ss_pred CccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 6 RNCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 6 ~~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
.+..+++.|.|. +.+.+|...++|+|++.
T Consensus 63 g~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 63 GRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 345567777774 35678899999999994
No 421
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=20.73 E-value=1.1e+02 Score=18.24 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=11.5
Q ss_pred HHHHcCCCEEEeCCC
Q psy14950 22 EAVYHGVPVVMMPGF 36 (77)
Q Consensus 22 e~l~~g~P~i~~P~~ 36 (77)
+++..++|.+++|..
T Consensus 110 ~~lk~~~pvvi~P~m 124 (174)
T TIGR02699 110 QAAKAKVPVYIMPSD 124 (174)
T ss_pred HHhccCCCEEEEECc
Confidence 445569999999974
No 422
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=20.68 E-value=2.9e+02 Score=18.80 Aligned_cols=50 Identities=16% Similarity=0.385 Sum_probs=32.3
Q ss_pred HHcCCCEEEeCCCC----C---hHHHHHHHHHhCceeeeCC------------CCCCHHHHHHHHHHHH
Q psy14950 24 VYHGVPVVMMPGFS----D---QHQNCKLMEEKGMGLITPH------------ETITGDILYITIREVL 73 (77)
Q Consensus 24 l~~g~P~i~~P~~~----~---q~~na~~~~~~g~g~~~~~------------~~~~~~~l~~~i~~~l 73 (77)
+..++|++++|-.. + -..|...+.+.|.-+.-.. +-.+++++...+.+.+
T Consensus 113 la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la~~~~g~gr~~~~~~I~~~~~~~~ 181 (399)
T PRK05579 113 LATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACGDVGPGRMAEPEEIVAAAERAL 181 (399)
T ss_pred HhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccccCCCcCCCCCCCHHHHHHHHHHHh
Confidence 34589999999432 2 3467777888887654331 1245778877777665
No 423
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=20.67 E-value=1.2e+02 Score=20.34 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.7
Q ss_pred ecCChHHHHHHHHcCCCEEEeCCC
Q psy14950 13 THGGIHSSMEAVYHGVPVVMMPGF 36 (77)
Q Consensus 13 ~h~G~~t~~e~l~~g~P~i~~P~~ 36 (77)
-||||-+..-+++.|--++.+|..
T Consensus 173 R~aG~lAl~aglA~~a~~ilipE~ 196 (347)
T COG0205 173 RHAGWLALAAGLATGADIILIPEE 196 (347)
T ss_pred cChhHHHHHHHHhcCCCEEEecCc
Confidence 389999999999999888888853
No 424
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.55 E-value=1.9e+02 Score=20.37 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=20.7
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|- +.+.+|...++|+|++.
T Consensus 84 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 84 KVGVALVTSGPGVTNAVTGIATAYMDSIPMVVIS 117 (587)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44567777663 45678888999999994
No 425
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA. The endonuclease binds 2 magnesium ions per subunit. which probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A 2IZO_A 1A77_A 1A76_A 3QEA_Z 3QE9_Y 3QEB_Z ....
Probab=20.54 E-value=1.5e+02 Score=15.43 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=15.4
Q ss_pred HcCCCEEEeCCCCChHHHHHHHHHhCc
Q psy14950 25 YHGVPVVMMPGFSDQHQNCKLMEEKGM 51 (77)
Q Consensus 25 ~~g~P~i~~P~~~~q~~na~~~~~~g~ 51 (77)
.+|+|.+..| +|-..-+.++.+.|.
T Consensus 2 ~~gv~~i~AP--~EAeAq~A~L~~~g~ 26 (94)
T PF00867_consen 2 LMGVPYIVAP--YEAEAQCAYLERNGL 26 (94)
T ss_dssp HHT-EEEE-S--S-HHHHHHHHHHTTS
T ss_pred CCCCeEEEcC--chHHHHHHHHHHhcc
Confidence 3689999998 555555567777775
No 426
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=20.46 E-value=1e+02 Score=18.20 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCCEEEe
Q psy14950 18 HSSMEAVYHGVPVVMM 33 (77)
Q Consensus 18 ~t~~e~l~~g~P~i~~ 33 (77)
-.+.+++..|+|+++.
T Consensus 114 ~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 114 DEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 4566799999999997
No 427
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=20.46 E-value=1.9e+02 Score=20.48 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=20.8
Q ss_pred ccceEEecCCh------HHHHHHHHcCCCEEEeC
Q psy14950 7 NCKLFITHGGI------HSSMEAVYHGVPVVMMP 34 (77)
Q Consensus 7 ~~~~~i~h~G~------~t~~e~l~~g~P~i~~P 34 (77)
+..+++.|.|. +.+.+|...++|+|++.
T Consensus 94 ~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~ 127 (612)
T PRK07789 94 RVGVCMATSGPGATNLVTPIADANMDSVPVVAIT 127 (612)
T ss_pred CCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44567777664 45678888999999994
No 428
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=20.36 E-value=2.9e+02 Score=18.68 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=28.2
Q ss_pred CCCCCccceEEec--CChH---HHHHHHH-------cCCCEEEeCCCCChHHHHHH-HHHhCceeee
Q psy14950 2 PTGHRNCKLFITH--GGIH---SSMEAVY-------HGVPVVMMPGFSDQHQNCKL-MEEKGMGLIT 55 (77)
Q Consensus 2 ~l~~~~~~~~i~h--~G~~---t~~e~l~-------~g~P~i~~P~~~~q~~na~~-~~~~g~g~~~ 55 (77)
++..|.+|.++.+ +|.. .+.+++. .++|+++. +.......+++ +.+.|+.+..
T Consensus 305 ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~-l~G~~~e~~~~iL~~~Gipvf~ 370 (392)
T PRK14046 305 VLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVR-LAGTNVEEGRKILAESGLPIIT 370 (392)
T ss_pred HHcCCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-cCCCCHHHHHHHHHHcCCCeee
Confidence 4567888887753 2321 2333333 47899554 33434444444 6666765543
No 429
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=20.31 E-value=2.7e+02 Score=18.46 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=33.4
Q ss_pred CCCCccceEEe------cCChHHHHHHHHcCCCEEEe-CCCCChHHHHH-HHHHhCceeeeCC
Q psy14950 3 TGHRNCKLFIT------HGGIHSSMEAVYHGVPVVMM-PGFSDQHQNCK-LMEEKGMGLITPH 57 (77)
Q Consensus 3 l~~~~~~~~i~------h~G~~t~~e~l~~g~P~i~~-P~~~~q~~na~-~~~~~g~g~~~~~ 57 (77)
+..+.++++.. +-+.--..+++..|+.+++= |+..++..-.. .+.+.|+-..+..
T Consensus 60 l~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~~ 122 (343)
T TIGR01761 60 PDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVNT 122 (343)
T ss_pred hcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 44556666664 23356677899999999884 88643333333 3345566655543
No 430
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=20.08 E-value=1.3e+02 Score=16.99 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHcCCC
Q psy14950 61 TGDILYITIREVLNNPR 77 (77)
Q Consensus 61 ~~~~l~~~i~~~l~~~~ 77 (77)
+++.+...++++|++++
T Consensus 34 ~~~~l~~q~~RML~dpr 50 (128)
T PF07631_consen 34 TPEQLRAQAERMLADPR 50 (128)
T ss_pred CHHHHHHHHHHHHcCcc
Confidence 57888888999988863
Done!