RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14950
(77 letters)
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 76.7 bits (189), Expect = 3e-18
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGD 63
GH + F+TH G + EA+ HGVP+V MP F DQ N K ME KG + T+T +
Sbjct: 338 GHPKTRAFVTHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSE 397
Query: 64 ILYITIREVLNNP 76
L ++ V+N+P
Sbjct: 398 DLLNALKTVINDP 410
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 64.8 bits (158), Expect = 4e-14
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
I HGG ++ EA+Y GVP+V++P +DQ N + +EE G G+ P E +T + L
Sbjct: 299 PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERL 358
Query: 66 YITIREVLNNP 76
+ EVL +
Sbjct: 359 RAAVNEVLADD 369
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 64.3 bits (157), Expect = 5e-14
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYITI 69
FITHGG++S+MEA+++GVP+V +P +DQ + + E G+G P E +T + L +
Sbjct: 294 AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAV 353
Query: 70 REVLNNPR 77
VL++PR
Sbjct: 354 LAVLSDPR 361
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 61.5 bits (150), Expect = 6e-13
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDI 64
H+N K F+T GG+ S+ EA+ VP+V +P DQ N E G+G T++
Sbjct: 362 HKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQ 421
Query: 65 LYITIREVLNNPR 77
L + I +V+ NP+
Sbjct: 422 LVLAIVDVIENPK 434
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 57.0 bits (138), Expect = 2e-11
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
C + HGG ++ A+ GVP +++P F DQ + E G G +T + L
Sbjct: 305 CAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAA 364
Query: 68 TIREVLNNP 76
+R +L+ P
Sbjct: 365 ALRRLLDPP 373
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 50.8 bits (121), Expect = 4e-09
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE 48
HR F+TH G SS+E++ GVPVV P +SDQ N KL+EE
Sbjct: 343 HRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEE 386
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 44.3 bits (104), Expect = 6e-07
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE 48
F+TH G +S+ME + GVP+V MP ++DQ N K +++
Sbjct: 339 FMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQD 376
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 44.2 bits (105), Expect = 7e-07
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK---GMGL 53
F TH G +S++EAV+ GVP++ P F DQ N KL+ E G +
Sbjct: 345 FWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRV 390
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 44.3 bits (104), Expect = 8e-07
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITPHETITGD 63
H F+TH G +S++E V GVPVV P ++DQ + +L+ + G+G+ ++ + G+
Sbjct: 340 HMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399
Query: 64 I 64
+
Sbjct: 400 L 400
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 43.6 bits (103), Expect = 1e-06
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
H + F+TH G +S+MEA+ GVPVV P + DQ + +
Sbjct: 352 AHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL 394
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 43.1 bits (102), Expect = 2e-06
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQN 42
F+TH G +S +E+++HGVP+ P +++QH N
Sbjct: 361 FVTHCGWNSVLESLWHGVPMAPWPLYAEQHLN 392
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 40.7 bits (95), Expect = 1e-05
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMGLIT--PHETIT 61
H+ F+TH G S++E+V GVP++ P F++Q+ N L+ +E G+ + + P E I+
Sbjct: 354 HQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413
Query: 62 GDILYITIREVL 73
+ +R+V+
Sbjct: 414 RSKIEALVRKVM 425
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 40.1 bits (93), Expect = 3e-05
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMGLIT---PHETI 60
HR+ F++H G S +E++ GVP+V P +++Q N L+ EE G+ + T P E +
Sbjct: 351 HRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKV 410
Query: 61 TG 62
G
Sbjct: 411 IG 412
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 39.5 bits (92), Expect = 3e-05
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEE 48
H F+TH G +S++E + GVP++ P F++Q N KL+ E
Sbjct: 360 HPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVE 403
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 38.7 bits (90), Expect = 6e-05
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMP--GFSDQHQNCKLMEEKGMG 52
+N +L ITHGG EA+ G P++++P G +Q N +E+ G G
Sbjct: 246 KNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCG 294
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 38.2 bits (89), Expect = 9e-05
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMG-----------LITPHE 58
F+TH G +S +E+++ GVP+ P +++Q N M EE G+ L E
Sbjct: 364 FVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEME 423
Query: 59 TITGD 63
T+T +
Sbjct: 424 TVTAE 428
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 38.0 bits (89), Expect = 9e-05
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 8 CKLFITHGGIHSSMEAVYHGVPVVMMP--GFSDQHQNCKLMEEKGMGLITPHETITGDIL 65
C I + G EA+Y G P++++P G +Q N +E G G++ E + +L
Sbjct: 250 CSAVICNAGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVL 309
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 37.7 bits (88), Expect = 2e-04
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMP--GFSDQHQ--NCKLMEEKGMGLITPHETITGDIL 65
L I+ G + E + GVP +++P +D HQ N K +E+ G L+ +T + L
Sbjct: 255 LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314
Query: 66 YITIREVLNNP 76
I +L+NP
Sbjct: 315 AELILRLLSNP 325
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 36.6 bits (84), Expect = 4e-04
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
H+ F++H G +S +E+++ GVP+V P +++Q N LM
Sbjct: 347 AHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLM 389
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 36.2 bits (83), Expect = 6e-04
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITG 62
H+ F+TH G +S +EAV GVP+V P +++Q N ++ ++ I+ +E+ TG
Sbjct: 350 HKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETG 407
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 34.9 bits (81), Expect = 0.001
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 22 EAVYHGVPVVMMP---GFSDQHQNCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76
E GVP +++P DQ+ N K +E+ G GL+ + + + L + ++L +P
Sbjct: 265 ELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDP 322
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 34.1 bits (78), Expect = 0.002
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITP 56
H + F+TH G +S +E + G +++ P ++Q N +L+ K +GL P
Sbjct: 355 HESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVP 406
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 34.1 bits (78), Expect = 0.003
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
HR F+TH G +S +E + GVP++ P +DQ N L+
Sbjct: 359 HRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLL 400
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 33.5 bits (76), Expect = 0.004
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME 47
F +H G +S++E++ GVP++ P SDQ N + +E
Sbjct: 346 FWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLE 382
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 33.1 bits (76), Expect = 0.005
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMP--GFSDQHQ--NCKLMEEKGMGLITPHETITGDIL 65
L I+ G + E + G P +++P + +HQ N + + G L+ + +T + L
Sbjct: 75 LVISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKL 134
Query: 66 YITIREVLNNP 76
+ ++L P
Sbjct: 135 VEALLKLLLKP 145
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 32.9 bits (75), Expect = 0.006
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM 46
F+TH G +S +E V G+P+V P ++Q N KL+
Sbjct: 367 FVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLV 402
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 32.8 bits (76), Expect = 0.006
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 27 GVPVVMMP--GFSDQHQ--NCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76
G+P +++P +D HQ N + + + G ++ P E +T + L + E+L++P
Sbjct: 272 GLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325
>gnl|CDD|224436 COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell
envelope biogenesis, outer membrane].
Length = 419
Score = 32.3 bits (74), Expect = 0.010
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETITGDILYI 67
+ GG H+ +E G PV+ P + + + + G GL + + +
Sbjct: 327 LVPIGG-HNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVEL 382
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 32.1 bits (73), Expect = 0.016
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC-KLMEEKGMGL 53
H+ F++H G +S +E+++ GVP+ P +++Q N +++E G+ +
Sbjct: 356 HKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAV 405
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 30.5 bits (70), Expect = 0.054
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 27 GVPVVMMPGF---SDQHQ--NCKLMEEKGMGLITPHETITGDILYITIREVLNNP 76
G+P +++P +D HQ N + + + G L+ P +T + L + E+L++P
Sbjct: 272 GLPAILVP-LPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDP 325
>gnl|CDD|235589 PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed.
Length = 425
Score = 30.2 bits (69), Expect = 0.072
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLI 54
+ GG H+ +E GVPV+ P + + + + + G +
Sbjct: 329 LVKRGG-HNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQ 371
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 29.2 bits (66), Expect = 0.13
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 27 GVPVVMM-PGFSDQHQNCKLM 46
GV + M P + D QN KLM
Sbjct: 270 GVTIFMQVPSYGDALQNFKLM 290
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 29.3 bits (65), Expect = 0.15
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK 49
H + F++H G S E++ +V++P DQ N +L+ ++
Sbjct: 333 HPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE 377
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 29.1 bits (65), Expect = 0.16
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK 49
H+ ++TH G +S+MEA+ ++ P DQ NC + +
Sbjct: 344 HQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDV 388
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 27.2 bits (61), Expect = 0.80
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMPGFS 37
L HG ++ ++ G V +P F
Sbjct: 138 LHHVHGLFNALHCPLWAGASVEFLPRFD 165
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large
N-terminal subdomain and a smaller C-terminal
subdomain.
Length = 338
Score = 26.5 bits (59), Expect = 1.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 10 LFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLME 47
LF GG + A+ G VV+ GF +L+E
Sbjct: 50 LFHVVGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIE 87
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 26.5 bits (59), Expect = 1.5
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 12 ITHGGIHSSMEAVY--------HGVPVVMMPGFSDQHQNCKLMEEKGM-GLITPHETITG 62
ITHG ++++ EA++ V V +P F D M GM G +T
Sbjct: 172 ITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHD-------M---GMVGFLTVPMYFGA 221
Query: 63 DILYITIREVLNNP 76
+++ +T + L +P
Sbjct: 222 ELVKVTPMDFLRDP 235
>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated.
Length = 398
Score = 26.3 bits (58), Expect = 1.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 11 FITHGGIHSSMEAVYHGVPVVMMPGFSDQH 40
+T+ G H S ++ VPV++M G S +
Sbjct: 210 LMTYEGKHVSPGSLTKDVPVIVMNGLSKVY 239
>gnl|CDD|233704 TIGR02064, dsrA, sulfite reductase, dissimilatory-type alpha
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction. It
remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers of
either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster prosthetic
center. Found in sulfate-reducing bacteria, these genes
are commonly located in an unidirectional gene cluster.
This model describes the alpha subunit of sulfite
reductase [Central intermediary metabolism, Sulfur
metabolism].
Length = 402
Score = 26.0 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 41 QNCKLMEEKGMGLITPHETITGDILYITIR-EVLNN 75
Q C + E+ G GL H TGDI+++ + L
Sbjct: 101 QLCDVWEKYGSGLTNFHGQ-TGDIVFLGTQTPQLQE 135
>gnl|CDD|213961 TIGR04348, TIGR04348, putative glycosyltransferase, TIGR04348
family. This putative glycosyltransferase is found in
marine bacteria such as Marinobacter and soil bacteria
such as Anaeromyxobacter, but does not seem to occur in
known pathogenic bacteria.
Length = 310
Score = 25.8 bits (57), Expect = 2.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 15 GGIHSSMEAVYHGVPVV 31
GG + EAV G PV+
Sbjct: 224 GGANVISEAVASGTPVL 240
>gnl|CDD|163645 cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related
proteins, metallophosphatase domain. GpdQ
(glycerophosphodiesterase Q, also known as Rv0805 in
Mycobacterium tuberculosis) is a binuclear
metallophosphoesterase from Enterobacter aerogenes that
catalyzes the hydrolysis of mono-, di-, and triester
substrates, including some organophosphate pesticides
and products of the degradation of nerve agents. The
GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide
phosphodiesterase activity. GpdQ and Rv0805 belong to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 240
Score = 25.6 bits (57), Expect = 2.2
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 4 GHRNCKLFITHGGIHSSMEAVYHGVPVVMMPG 35
H N + I G +H ++ + G+P++ P
Sbjct: 179 RHPNVRA-ILCGHVHRPIDGSWGGIPLLTAPS 209
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
Mutations in this domain of human PIGA lead to disease
(Paroxysmal Nocturnal haemoglobinuria). Members of this
family transfer activated sugars to a variety of
substrates, including glycogen, Fructose-6-phosphate and
lipopolysaccharides. Members of this family transfer
UDP, ADP, GDP or CMP linked sugars. The eukaryotic
glycogen synthases may be distant members of this
family.
Length = 158
Score = 25.3 bits (56), Expect = 3.3
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 6 RNCKLFIT-----HGGIHSSMEAVYHGVPVVM--MPGFSD 38
R LF+ G+ +EA+ GVPV+ + G ++
Sbjct: 77 RIADLFVLPSRYEGFGL-VLLEAMAAGVPVIATDVGGPAE 115
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 25.2 bits (56), Expect = 3.6
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 15 GGIHSSMEAVYHGVPVVMMP 34
GG+ ++ +Y G PVV+M
Sbjct: 206 GGL---LQPLYAGFPVVLMS 222
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 25.1 bits (56), Expect = 4.1
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 12 ITHGGIHS-SMEAVYHGVPVVMMPGF 36
+ H + A+ G VV+MP F
Sbjct: 51 LYHAAGGLFLLPALAAGGTVVLMPKF 76
>gnl|CDD|99998 cd04949, GT1_gtfA_like, This family is most closely related to the
GT1 family of glycosyltransferases and is named after
gtfA in Streptococcus gordonii, where it plays a role in
the O-linked glycosylation of GspB, a cell surface
glycoprotein involved in platelet binding. In general
glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
bacteria.
Length = 372
Score = 24.9 bits (55), Expect = 4.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 21 MEAVYHGVPVV 31
MEA+ HG+PV+
Sbjct: 296 MEALSHGLPVI 306
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 25.0 bits (54), Expect = 5.4
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK 49
H + F+ H G S E++ +V +P +DQ +L+ E+
Sbjct: 328 HPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEE 372
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 24.2 bits (53), Expect = 7.8
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 22 EAVYHGVPVVMMPGFSDQHQNCKLMEE--------KGMGLITPHE-TITGDILYITIREV 72
+ + VV++ + ++ + ++E + + + P I GDI ++I +
Sbjct: 45 DEANAILEVVVLEEEPVRRRSNENLKEILSDRLPEEVLRELVPSSFDIIGDIAILSIPDE 104
Query: 73 L 73
L
Sbjct: 105 L 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.437
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,962,070
Number of extensions: 300131
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 52
Length of query: 77
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 31
Effective length of database: 8,897,318
Effective search space: 275816858
Effective search space used: 275816858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)