RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14950
(77 letters)
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 401
Score = 69.3 bits (168), Expect = 2e-16
Identities = 18/76 (23%), Positives = 28/76 (36%)
Query: 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETI 60
R I HG + A GVP +++P +DQ + G+G+ T
Sbjct: 296 FQALFRRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTP 355
Query: 61 TGDILYITIREVLNNP 76
T + L + VL
Sbjct: 356 TFESLSAALTTVLAPE 371
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 67.9 bits (164), Expect = 7e-16
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGLITPHETITGD 63
H F+TH G +S E+V GVP++ P F DQ N +++E+ +G+ T
Sbjct: 335 HEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKS 394
Query: 64 ILYITIREVLNNPR 77
L ++L+ +
Sbjct: 395 GLMSCFDQILSQEK 408
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 401
Score = 66.7 bits (161), Expect = 2e-15
Identities = 17/76 (22%), Positives = 27/76 (35%)
Query: 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLITPHETI 60
I HGG ++ A G P +++P +DQ + E G+G+
Sbjct: 295 HQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIP 354
Query: 61 TGDILYITIREVLNNP 76
T D L + L
Sbjct: 355 TFDSLSAALATALTPE 370
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 62.5 bits (150), Expect = 5e-14
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMGLITPHETITGD 63
H + F+TH G +S+ E++ GVP++ P F+DQ +C+ + E +G + + +
Sbjct: 362 HPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIG-MEIDTNVKRE 420
Query: 64 ILYITIREVLNNPR 77
L I EV+ +
Sbjct: 421 ELAKLINEVIAGDK 434
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 59.4 bits (142), Expect = 7e-13
Identities = 16/80 (20%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLM-EEKGMGLITP------H 57
H+ F++H G +S +E+++ GVP++ P +++Q N + +E G+GL
Sbjct: 346 HKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGS 405
Query: 58 ETITGDILYITIREVLNNPR 77
+ + + + ++++++
Sbjct: 406 DVVAAEEIEKGLKDLMDKDS 425
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 58.6 bits (140), Expect = 2e-12
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEK-GMGL---ITPHETI 60
H + F+TH G +S++E+V G+P++ P +++Q N L+ E L +
Sbjct: 350 HPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLV 409
Query: 61 TGDILYITIREVLNNPR 77
+ + ++ ++
Sbjct: 410 RREEVARVVKGLMEGEE 426
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 55.4 bits (132), Expect = 2e-11
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 1 MPTGHRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSD----QHQNCKLMEEKGMGLITP 56
+ I H +++ A+ G+P +++ D Q + + E G+G+
Sbjct: 280 LQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVD 339
Query: 57 HETITGDILYITIREVLNNP 76
T D L + L
Sbjct: 340 GPVPTIDSLSAALDTALAPE 359
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Length = 351
Score = 36.2 bits (82), Expect = 1e-04
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMP---GFSDQHQNCKLMEEKGMGLITPHETIT 61
+ + + G + E G+P + +P Q+ N +E+ G I ++
Sbjct: 246 YAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLS 305
Query: 62 GDILYITIREVLNNPR 77
D + T+
Sbjct: 306 VDAVANTLAGWSRETL 321
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 24.3 bits (51), Expect = 1.6
Identities = 9/39 (23%), Positives = 11/39 (28%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNC 43
I G HS Y + +PG Q C
Sbjct: 184 RFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYC 222
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide
phosphodiesterase {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 256
Score = 22.5 bits (46), Expect = 7.4
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 5 HRNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQ 41
I G +H S A + G+PV +
Sbjct: 187 RGTDVRAILAGHLHYSTNATFVGIPVSVASATCYTQD 223
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 22.4 bits (47), Expect = 8.0
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 6 RNCKLFITHGGIHSSMEAVYHGVPVVMMPGFSDQHQNCKLMEEKGMGLIT 55
+ + F H + E G+ + F C + EK MG+ +
Sbjct: 437 KLQQFFNHHMFVLEQEEYKKEGIEWEFID-FGMDLAACIELIEKPMGIFS 485
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 21.9 bits (46), Expect = 8.6
Identities = 4/20 (20%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 2 PTGHRNCKLFITHGGIHSSM 21
P G+ +C++++ G + +
Sbjct: 9 PAGNNDCRIYV--GNLPPDI 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.437
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,863
Number of extensions: 11674
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 18
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.8 bits)