Query psy14955
Match_columns 191
No_of_seqs 131 out of 1060
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 16:45:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2302|consensus 100.0 3.6E-30 7.8E-35 229.7 10.1 183 7-189 1091-1291(1956)
2 KOG2301|consensus 99.9 2.9E-26 6.2E-31 217.8 10.4 171 15-190 816-998 (1592)
3 KOG2301|consensus 99.9 7.3E-26 1.6E-30 215.1 6.9 184 3-186 39-223 (1592)
4 KOG2302|consensus 99.9 1.4E-24 2.9E-29 194.4 12.6 172 16-188 55-239 (1956)
5 KOG3713|consensus 99.8 1.1E-19 2.3E-24 154.5 16.0 155 24-181 169-368 (477)
6 KOG1545|consensus 99.7 1.7E-17 3.7E-22 136.3 11.3 146 25-173 169-376 (507)
7 PF00520 Ion_trans: Ion transp 99.7 1.2E-15 2.7E-20 116.8 11.1 121 67-189 1-128 (200)
8 KOG4390|consensus 99.3 2.1E-13 4.5E-18 113.5 0.8 158 24-184 162-350 (632)
9 KOG1419|consensus 99.1 6.5E-10 1.4E-14 96.2 9.7 157 29-186 77-260 (654)
10 PLN03223 Polycystin cation cha 99.0 5E-09 1.1E-13 98.4 12.0 114 72-185 1185-1357(1634)
11 PF08016 PKD_channel: Polycyst 98.7 3.3E-07 7.3E-12 79.3 12.2 110 71-185 219-362 (425)
12 KOG3599|consensus 98.6 6.1E-07 1.3E-11 82.6 11.6 112 71-186 474-620 (798)
13 PLN03192 Voltage-dependent pot 97.7 0.0012 2.7E-08 61.8 13.9 84 21-114 52-153 (823)
14 TIGR00870 trp transient-recept 97.5 0.0027 5.8E-08 58.9 13.3 114 65-182 391-532 (743)
15 KOG3609|consensus 95.3 0.21 4.6E-06 46.3 10.5 112 65-180 383-526 (822)
16 KOG3614|consensus 94.4 0.66 1.4E-05 45.3 11.5 155 22-176 771-948 (1381)
17 KOG1545|consensus 93.4 0.26 5.7E-06 41.8 6.3 61 125-190 325-385 (507)
18 KOG1420|consensus 93.1 0.056 1.2E-06 48.3 2.0 74 65-145 164-237 (1103)
19 KOG0498|consensus 92.0 1.8 3.8E-05 40.3 10.2 82 21-112 68-176 (727)
20 PF00520 Ion_trans: Ion transp 71.0 25 0.00055 25.8 7.1 51 121-171 63-114 (200)
21 KOG0501|consensus 64.6 34 0.00074 31.4 7.3 98 41-139 219-340 (971)
22 PRK10537 voltage-gated potassi 56.8 1.1E+02 0.0023 26.6 9.0 60 121-186 105-164 (393)
23 KOG3713|consensus 56.5 17 0.00037 32.2 4.0 53 128-184 309-363 (477)
24 KOG0510|consensus 49.0 74 0.0016 30.3 7.0 94 90-183 585-687 (929)
25 KOG0500|consensus 46.7 59 0.0013 29.0 5.8 106 65-176 31-145 (536)
26 KOG3533|consensus 46.7 1.5E+02 0.0033 30.4 8.8 50 136-185 2400-2449(2706)
27 PF11044 TMEMspv1-c74-12: Plec 34.1 70 0.0015 18.7 2.9 20 163-182 9-28 (49)
28 PF07790 DUF1628: Protein of u 33.2 79 0.0017 20.4 3.6 28 155-182 3-30 (80)
29 PF12606 RELT: Tumour necrosis 29.9 1.3E+02 0.0028 18.0 3.8 23 169-191 13-35 (50)
30 PLN03192 Voltage-dependent pot 25.6 2.1E+02 0.0046 27.2 6.4 9 129-137 171-179 (823)
31 KOG1734|consensus 20.5 5E+02 0.011 21.6 8.5 43 143-185 131-173 (328)
No 1
>KOG2302|consensus
Probab=99.96 E-value=3.6e-30 Score=229.71 Aligned_cols=183 Identities=26% Similarity=0.465 Sum_probs=165.9
Q ss_pred CCCccccccCCcEEEeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc---------cchhhhHHHHHHH
Q psy14955 7 KGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT---------IESTEVIFTGIYT 77 (191)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~---------~~~~~~~~~~iF~ 77 (191)
|+.++-..+..=+.++|+|.|++|..|++++.|+.|+.+++++|++|++.+++|.+.. +..-+++|+.+|.
T Consensus 1091 ~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV 1170 (1956)
T KOG2302|consen 1091 YKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFV 1170 (1956)
T ss_pred cCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHH
Confidence 3444444455556678999999999999999999999999999999999999998876 5566799999999
Q ss_pred HHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhcc---------CchhHHHHHHHhhhhhccccchhHHHHH
Q psy14955 78 FESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL---------GNLAALRTFRVLRALKTVAIVPGLKTIV 148 (191)
Q Consensus 78 ~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~---------~~~~~lr~~R~lR~~rl~~~~~~l~~l~ 148 (191)
+|+.+|++|.|+.++..+|++|.||.+|++++.++++++.+.. +.++++|++|.+|++|.+.+-++++.+.
T Consensus 1171 ~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSra~glklVv 1250 (1956)
T KOG2302|consen 1171 VEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVV 1250 (1956)
T ss_pred HHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHH
Confidence 9999999999999999999999999999999999999998822 2477889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy14955 149 GAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESH 189 (191)
Q Consensus 149 ~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~~~~~ 189 (191)
+++.+|+++++++.++..-++++|+++|+++|+|+++.|.-
T Consensus 1251 eTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g 1291 (1956)
T KOG2302|consen 1251 ETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLG 1291 (1956)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccc
Confidence 99999999999999999999999999999999999999863
No 2
>KOG2301|consensus
Probab=99.93 E-value=2.9e-26 Score=217.79 Aligned_cols=171 Identities=32% Similarity=0.565 Sum_probs=158.7
Q ss_pred cCCcEEEeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc---------cchhhhHHHHHHHHHHHHHHH
Q psy14955 15 SATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT---------IESTEVIFTGIYTFESAVKVM 85 (191)
Q Consensus 15 ~~~~~l~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~---------~~~~~~~~~~iF~~E~~lki~ 85 (191)
.+.++.+..+++| .|+.|++++++.+|+.++..+|+++..+.+.|++.. +.+.|++|+.+|++|+++|++
T Consensus 816 ~~~~~~~~~~~~n-~r~~c~~iv~~~~f~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~i 894 (1592)
T KOG2301|consen 816 GSVDSAKGKSWFN-IRKTCHIIVEHDWFEAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWI 894 (1592)
T ss_pred ccccccccccccc-ceeeeeeeeeeeHHHHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788888 999999999999999999999999999999988665 889999999999999999999
Q ss_pred hccccccccccccccccchhHHHHHHHHHHHhhc---cCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q psy14955 86 ARGFILESFTYLRDAWNWLDFIVIALAYVTMGID---LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVI 162 (191)
Q Consensus 86 a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~---~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~ 162 (191)
|+|+. .|++|.||++|++++..+++.+... ....+.+|.+|++||+|.+++.+++|..+.++..++|++++++
T Consensus 895 a~Gf~----~y~rn~w~~lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~ 970 (1592)
T KOG2301|consen 895 AYGFF----FYFRNAWNWLDFVVVIVSLISLIASLKILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVL 970 (1592)
T ss_pred HhHHH----HHHhhHHhhhhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH
Confidence 99987 3999999999999999999999883 3467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy14955 163 ILTMFSLSVFALMGLQDSRGKKSDESHD 190 (191)
Q Consensus 163 ~~l~~~~~ifaiiG~~lF~g~~~~~~~~ 190 (191)
++.++++++||++|+++|+|+++.|+.+
T Consensus 971 lV~li~~fiFai~gv~lF~Gkf~~C~d~ 998 (1592)
T KOG2301|consen 971 LVCLIFWFIFAIMGVQLFAGKFYACNDP 998 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHCCCceeccCC
Confidence 9999999999999999999999999875
No 3
>KOG2301|consensus
Probab=99.92 E-value=7.3e-26 Score=215.06 Aligned_cols=184 Identities=58% Similarity=0.912 Sum_probs=177.1
Q ss_pred EEEcCCCccccccCCcEEEeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc-cchhhhHHHHHHHHHHH
Q psy14955 3 VVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT-IESTEVIFTGIYTFESA 81 (191)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~-~~~~~~~~~~iF~~E~~ 81 (191)
++.+|.+..++.++++++++++|.|+.|+.+.++.+||+|+.++...++.||+.++.+.++. ++..|+.++++|+.|.+
T Consensus 39 ~~~~k~~~~~~~~~~~~l~~~s~~n~~R~~~i~i~~~~~f~~~i~~ti~~ncv~~~~~~~~~~~~~~e~~f~~i~~~E~~ 118 (1592)
T KOG2301|consen 39 GVLAKGKAIFRFSAISALLSLSPFNPIRSSAIKILVHPWFSLFILATIIANCVVMAMTPLNYWILAAEYTFLGIFTFESV 118 (1592)
T ss_pred cccccccccCCCCcchhhhhcCcccchhhheeeeeccccHHHHHHHHHHHHeeeeccCCCCcchhhcceehhhHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999995555 99999999999999999
Q ss_pred HHHHhccccccccccccccccchhHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q psy14955 82 VKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDV 161 (191)
Q Consensus 82 lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~ 161 (191)
+|+.|+|+..++..|.+|+||++|+++++.+++....+...++.+|.+|++|++|++...++++...+++.++..++..+
T Consensus 119 ~ki~a~G~~~~~~sylr~~wn~ldf~vvv~~~~s~~~~~~~~~~lR~frvlr~lk~vs~~~~lk~~~~~ii~~~~~l~~~ 198 (1592)
T KOG2301|consen 119 VKILARGFFRCDFSYLRDPWNWLDFVVIVIGLLSTLLHLYNIRALRTFRVLRALKLVSGIPGLKTRVGALIKASKQLVDV 198 (1592)
T ss_pred HHHHHHHhhcCCCcccCCccccccEEEeeeehHHHhccccchhhhccccccchhhhccCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14955 162 IILTMFSLSVFALMGLQDSRGKKSD 186 (191)
Q Consensus 162 ~~~l~~~~~ifaiiG~~lF~g~~~~ 186 (191)
.++.++.+.+||++|+++|-|+.+.
T Consensus 199 ~~l~~f~~~ifa~igl~lf~g~l~~ 223 (1592)
T KOG2301|consen 199 VILTFFFLSVFALIGLQLFMGRLTY 223 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchH
Confidence 9999999999999999999999854
No 4
>KOG2302|consensus
Probab=99.92 E-value=1.4e-24 Score=194.36 Aligned_cols=172 Identities=26% Similarity=0.495 Sum_probs=159.9
Q ss_pred CCcEEEeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc-----------cchhhhHHHHHHHHHHHHHH
Q psy14955 16 ATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT-----------IESTEVIFTGIYTFESAVKV 84 (191)
Q Consensus 16 ~~~~l~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~-----------~~~~~~~~~~iF~~E~~lki 84 (191)
+.-.+|+++++.+.|-+|-+.+-+|||+.+.+++|++||+.+.+..+-+ ++..|.++.++|.+|+++|+
T Consensus 55 ap~vffcl~qttrprswclr~vcnpwfe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~km 134 (1956)
T KOG2302|consen 55 APIVFFCLRQTTRPRSWCLRMVCNPWFECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKM 134 (1956)
T ss_pred cceeEEEeccCCCchhHHHHhhccHHHHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999987765 78899999999999999999
Q ss_pred HhccccccccccccccccchhHHHHHHHHHHHhhccC--chhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q psy14955 85 MARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLG--NLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVI 162 (191)
Q Consensus 85 ~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~--~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~ 162 (191)
+|.|. ++++-|..|.||.+||++++.+.+++..+.. +++..|..|++|++|.+++.++||.++.-+..++|.+++++
T Consensus 135 valgi-fgkkcylgdtwnrldffiv~agm~eysldlqnvslsairtvrvlrplrainrvpsmrilvtllldtlpmlgnvl 213 (1956)
T KOG2302|consen 135 VALGI-FGKKCYLGDTWNRLDFFIVMAGMVEYSLDLQNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVL 213 (1956)
T ss_pred HHHhh-ccccccccCchhhhhhhheehhhhhhcccccccchhhhhhhhhhhhhhHhccCchHHHHHHHHHhhhhhhhhHH
Confidence 99995 7999999999999999999999999988655 47789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy14955 163 ILTMFSLSVFALMGLQDSRGKKSDES 188 (191)
Q Consensus 163 ~~l~~~~~ifaiiG~~lF~g~~~~~~ 188 (191)
++.+++++||+++|+|++.|.+...+
T Consensus 214 llcffvffifgivgvqlwagllrnrc 239 (1956)
T KOG2302|consen 214 LLCFFVFFIFGIVGVQLWAGLLRNRC 239 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999885543
No 5
>KOG3713|consensus
Probab=99.84 E-value=1.1e-19 Score=154.47 Aligned_cols=155 Identities=17% Similarity=0.318 Sum_probs=138.5
Q ss_pred CCCCHHHHHHHHHhcccc-------hHHHHHHHHHHHHHHHhcCCCCc-------------------------cchhhhH
Q psy14955 24 DPFNPIRRVAIYILVHPL-------FSLFIITTILTNCILMIMPGTPT-------------------------IESTEVI 71 (191)
Q Consensus 24 ~~~~~~r~~~~~iv~s~~-------f~~~i~~~I~~n~i~~~~~~~~~-------------------------~~~~~~~ 71 (191)
.+..+.|++++.++++|. |.....++|+++++.+|+.+.|+ +.++|.+
T Consensus 169 ~~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~v 248 (477)
T KOG3713|consen 169 GRCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETV 248 (477)
T ss_pred CChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHH
Confidence 345569999999999874 88889999999999999877664 6789999
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc---c----------CchhHHHHHHHhhhhhcc
Q psy14955 72 FTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID---L----------GNLAALRTFRVLRALKTV 138 (191)
Q Consensus 72 ~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~---~----------~~~~~lr~~R~lR~~rl~ 138 (191)
|.++|++|+++|.+. .+++.+|++++-|++|++++++.+++..+. . ..++++|++|++|++||.
T Consensus 249 Ci~WFT~E~llR~~~---~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLa 325 (477)
T KOG3713|consen 249 CIAWFTFEYLLRFLV---APNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLA 325 (477)
T ss_pred HHHHHHHHHHHHHHc---CchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999 889999999999999999999999987762 1 136789999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14955 139 AIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSR 181 (191)
Q Consensus 139 ~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~ 181 (191)
|++.++|.+..++.+|.++++-+++++..-+.+||.+..++=+
T Consensus 326 RhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek 368 (477)
T KOG3713|consen 326 RHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEK 368 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998876643
No 6
>KOG1545|consensus
Probab=99.74 E-value=1.7e-17 Score=136.28 Aligned_cols=146 Identities=23% Similarity=0.395 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhcCCCCc---------------------------------
Q psy14955 25 PFNPIRRVAIYILVHP-------LFSLFIITTILTNCILMIMPGTPT--------------------------------- 64 (191)
Q Consensus 25 ~~~~~r~~~~~iv~s~-------~f~~~i~~~I~~n~i~~~~~~~~~--------------------------------- 64 (191)
|+|.+.+.++.+.+.| .-..+..++|+++++..|+|+-|.
T Consensus 169 P~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~ 248 (507)
T KOG1545|consen 169 PRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGD 248 (507)
T ss_pred CcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccc
Confidence 7889999999988765 366778888999999999987664
Q ss_pred ------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc----------------cCc
Q psy14955 65 ------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID----------------LGN 122 (191)
Q Consensus 65 ------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~----------------~~~ 122 (191)
+-++|..|..+|+.|+++|..+ .++|..|++|..|++|++++++.++.+... ...
T Consensus 249 ~~f~dPFFiVEt~CIiWFtfEllvRf~a---CPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAI 325 (507)
T KOG1545|consen 249 TKFTDPFFIVETLCIIWFTFELLVRFFA---CPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAI 325 (507)
T ss_pred cccCCchHhHHHHHHHHHhHHHHHHHhc---CccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHH
Confidence 4478999999999999999999 889999999999999999999999988761 113
Q ss_pred hhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955 123 LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFA 173 (191)
Q Consensus 123 ~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa 173 (191)
++++|+.|++|++|+-|++++++.+.+++..|.++++.+++++++-+..||
T Consensus 326 LRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFs 376 (507)
T KOG1545|consen 326 LRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFS 376 (507)
T ss_pred HHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888888999999999999999999999999999877766666555554
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.65 E-value=1.2e-15 Score=116.83 Aligned_cols=121 Identities=30% Similarity=0.488 Sum_probs=104.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhccC-------chhHHHHHHHhhhhhccc
Q psy14955 67 STEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLG-------NLAALRTFRVLRALKTVA 139 (191)
Q Consensus 67 ~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~-------~~~~lr~~R~lR~~rl~~ 139 (191)
++|.++..+|.+|.++|+.+.|+. +.+|++++||++|+++++++.+....... ..+..|++|.+|++|+.+
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~--~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~ 78 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK--RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLR 78 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG---GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH--HHHHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccc
Confidence 478999999999999999999863 56999999999999999999777766221 367899999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy14955 140 IVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESH 189 (191)
Q Consensus 140 ~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~~~~~ 189 (191)
..+.++....++.++.+.+...+.++.++++.||++|+++|++..++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~ 128 (200)
T PF00520_consen 79 RFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD 128 (200)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----
T ss_pred ccccccccccccccccccccccccccccccccccchhheecccccccccc
Confidence 99999999999999999999999999999999999999999999876653
No 8
>KOG4390|consensus
Probab=99.34 E-value=2.1e-13 Score=113.49 Aligned_cols=158 Identities=19% Similarity=0.278 Sum_probs=135.6
Q ss_pred CCCCHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhcCCCCc-------------------cchhhhHHHHHHH
Q psy14955 24 DPFNPIRRVAIYILVHP-------LFSLFIITTILTNCILMIMPGTPT-------------------IESTEVIFTGIYT 77 (191)
Q Consensus 24 ~~~~~~r~~~~~iv~s~-------~f~~~i~~~I~~n~i~~~~~~~~~-------------------~~~~~~~~~~iF~ 77 (191)
+....+|+++++-.++| .|.+.+.+.|.++++.-..|+.|- +..+|..|..+|+
T Consensus 162 p~~ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT 241 (632)
T KOG4390|consen 162 PAGLSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFT 241 (632)
T ss_pred cccchHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEee
Confidence 34467999999999987 477778888888888766665442 6678999999999
Q ss_pred HHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhh-cc----CchhHHHHHHHhhhhhccccchhHHHHHHHHH
Q psy14955 78 FESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGI-DL----GNLAALRTFRVLRALKTVAIVPGLKTIVGAVI 152 (191)
Q Consensus 78 ~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~-~~----~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~ 152 (191)
.|+++|.++ ++++.+|.+|...++|.+++++.+++++. +. +.+-.+|++|++|++|.-|++.++|.+..++.
T Consensus 242 ~EYlLRL~a---APsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLK 318 (632)
T KOG4390|consen 242 GEYLLRLFA---APSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLK 318 (632)
T ss_pred HHHHHHHHc---CchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhHH
Confidence 999999999 78889999999999999999999998887 22 24557999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14955 153 ESVKNLRDVIILTMFSLSVFALMGLQDSRGKK 184 (191)
Q Consensus 153 ~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~ 184 (191)
.+..+++.+++-+..-+.|||.+..+.=+|.-
T Consensus 319 SCASELGFLlFSLtMAIIIFATvMfYAEKg~~ 350 (632)
T KOG4390|consen 319 SCASELGFLLFSLTMAIIIFATVMFYAEKGSS 350 (632)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999998887766654
No 9
>KOG1419|consensus
Probab=99.09 E-value=6.5e-10 Score=96.16 Aligned_cols=157 Identities=18% Similarity=0.281 Sum_probs=120.8
Q ss_pred HHHHHHHHhccc------chHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhcccc----
Q psy14955 29 IRRVAIYILVHP------LFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFI---- 90 (191)
Q Consensus 29 ~r~~~~~iv~s~------~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~---- 90 (191)
.+-++|++++.| .|+.+++++++.+.++-++.+.++ +.++|++..++|.+|+++|+++.|..
T Consensus 77 ~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYr 156 (654)
T KOG1419|consen 77 IQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCRYR 156 (654)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 456788888876 388899999988888877776665 78899999999999999999998643
Q ss_pred --ccccccccccccchhHHHHHHHHHHHhhc-------cCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q psy14955 91 --LESFTYLRDAWNWLDFIVIALAYVTMGID-------LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDV 161 (191)
Q Consensus 91 --~~~~~y~~~~wn~~D~i~i~~~~~~~~~~-------~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~ 161 (191)
.++.+|-+.+..++|+++++.+..-+... ...++.+|.+.++|.+|.=|+-...+.+...+..-..++.-.
T Consensus 157 G~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt 236 (654)
T KOG1419|consen 157 GWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITT 236 (654)
T ss_pred cceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHH
Confidence 36778999999999999888886544442 224778888888888888787777777777766666666544
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14955 162 IILTMFSLSVFALMGLQDSRGKKSD 186 (191)
Q Consensus 162 ~~~l~~~~~ifaiiG~~lF~g~~~~ 186 (191)
. .+.++..||+..-+|+-+.....
T Consensus 237 ~-YIGFL~LIfsSflVYLaEKd~~~ 260 (654)
T KOG1419|consen 237 W-YIGFLVLIFSSFLVYLAEKDAQG 260 (654)
T ss_pred H-HHHHHHHHHHHHHHHHhhccccc
Confidence 4 44455588999999987665443
No 10
>PLN03223 Polycystin cation channel protein; Provisional
Probab=98.99 E-value=5e-09 Score=98.41 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHhccccc-cccccccccccchhHHHHHHHHHHHhhc----------c--------------------
Q psy14955 72 FTGIYTFESAVKVMARGFIL-ESFTYLRDAWNWLDFIVIALAYVTMGID----------L-------------------- 120 (191)
Q Consensus 72 ~~~iF~~E~~lki~a~G~~~-~~~~y~~~~wn~~D~i~i~~~~~~~~~~----------~-------------------- 120 (191)
+...|+.+-+.++...|... ++.+||+++||++|++.+.+++.....- .
T Consensus 1185 FILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls~sa~fl~ 1264 (1634)
T PLN03223 1185 GAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLSASANFTA 1264 (1634)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhhhcchhh
Confidence 45566777777776654222 3468999999999999988887665420 0
Q ss_pred --------------Cc--------------hhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955 121 --------------GN--------------LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVF 172 (191)
Q Consensus 121 --------------~~--------------~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~if 172 (191)
.. ...+-+++++|++|++++.+.++.+..++.++.+.++.++++++++++.|
T Consensus 1265 Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AF 1344 (1634)
T PLN03223 1265 LRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGY 1344 (1634)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00123467889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q psy14955 173 ALMGLQDSRGKKS 185 (191)
Q Consensus 173 aiiG~~lF~g~~~ 185 (191)
|.+|..+||....
T Consensus 1345 AqLG~LLFGt~ve 1357 (1634)
T PLN03223 1345 AFIGHVIFGNASV 1357 (1634)
T ss_pred HHHHHHHhccCch
Confidence 9999999987654
No 11
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.67 E-value=3.3e-07 Score=79.34 Aligned_cols=110 Identities=21% Similarity=0.366 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhcc--------------------Cc--------
Q psy14955 71 IFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL--------------------GN-------- 122 (191)
Q Consensus 71 ~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~--------------------~~-------- 122 (191)
++...|...-+.|+...|. +|++++||++|+++++.++....... .+
T Consensus 219 ~~~l~~~~~ei~~i~~~g~-----~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~ 293 (425)
T PF08016_consen 219 LFVLYFLYREIKKIRREGR-----AYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWD 293 (425)
T ss_pred HHHHHHHHHHHHHHHHhhh-----HHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHH
Confidence 3456677777778877663 89999999999999998877655400 01
Q ss_pred ------hhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14955 123 ------LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKS 185 (191)
Q Consensus 123 ------~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~ 185 (191)
...+-.+-.+|.+|+++..+.+..+.+++.++.+++...+++++++++.||..|.-+||....
T Consensus 294 ~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~ 362 (425)
T PF08016_consen 294 QLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSE 362 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 112334566788899999999999999999999999999999999999999999999987654
No 12
>KOG3599|consensus
Probab=98.58 E-value=6.1e-07 Score=82.64 Aligned_cols=112 Identities=18% Similarity=0.358 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhccC---------------------c-------
Q psy14955 71 IFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLG---------------------N------- 122 (191)
Q Consensus 71 ~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~---------------------~------- 122 (191)
++...|+.+-..++.-++. .+|++++||++|+.++..+++..+.... +
T Consensus 474 l~~~yf~~~e~~~i~~~~~----~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~ 549 (798)
T KOG3599|consen 474 LFVLYFAVAEGLKIWIHRL----GRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQW 549 (798)
T ss_pred HHHHHHHHHHHHHHHHhhH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHH
Confidence 3567888888888875443 3899999999999999999887765110 0
Q ss_pred -------hhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14955 123 -------LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSD 186 (191)
Q Consensus 123 -------~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~~ 186 (191)
...+-.+-.+|.+|.++..+.++.+-+++.++.++++.+++.++++++.||.+|..+||.+..+
T Consensus 550 ~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~ 620 (798)
T KOG3599|consen 550 NIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSD 620 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 1124456778999999999999999999999999999999999999999999999999886643
No 13
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.66 E-value=0.0012 Score=61.82 Aligned_cols=84 Identities=11% Similarity=0.351 Sum_probs=56.0
Q ss_pred EeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhc----CCC-C--ccchhhhHHHHHHHHHHHHHHHhc------
Q psy14955 21 WVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIM----PGT-P--TIESTEVIFTGIYTFESAVKVMAR------ 87 (191)
Q Consensus 21 ~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~----~~~-~--~~~~~~~~~~~iF~~E~~lki~a~------ 87 (191)
|+..|.++.++ +++.++.++++.+++...+ ... + .+..+|.++.++|.+|++++....
T Consensus 52 ~ii~P~~~~~~---------~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~ 122 (823)
T PLN03192 52 WIISPMDSRYR---------WWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRT 122 (823)
T ss_pred eEECCCCcHHH---------HHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCC
Confidence 46666665543 4677888888887776433 221 1 277899999999999999998542
Q ss_pred cc-ccc----ccccccccccchhHHHHHHHHH
Q psy14955 88 GF-ILE----SFTYLRDAWNWLDFIVIALAYV 114 (191)
Q Consensus 88 G~-~~~----~~~y~~~~wn~~D~i~i~~~~~ 114 (191)
|. ..+ ..+|++ .|-++|++.+++..+
T Consensus 123 ~~lV~d~~~I~~~Yl~-~~f~~Dlis~lP~~~ 153 (823)
T PLN03192 123 QLLVRDRKKIAVRYLS-TWFLMDVASTIPFQA 153 (823)
T ss_pred cEEEeCHHHHHHHHHH-HhHHHHHHHHhHHHH
Confidence 10 011 135764 488999998887643
No 14
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.48 E-value=0.0027 Score=58.86 Aligned_cols=114 Identities=16% Similarity=0.077 Sum_probs=79.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc-----------------c-------
Q psy14955 65 IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID-----------------L------- 120 (191)
Q Consensus 65 ~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~-----------------~------- 120 (191)
.++.......-+..|-...++..|.. .|+++.||.+|+......+...... .
T Consensus 391 ~e~~~~~~~~~~~~~e~~~~~~~g~~----~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (743)
T TIGR00870 391 LEMLIVTWVDGLRLGEEKLIWLGGIF----EYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTL 466 (743)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchh
Confidence 44444455555666666677776654 7999999999996554433322110 0
Q ss_pred ---CchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14955 121 ---GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVK-NLRDVIILTMFSLSVFALMGLQDSRG 182 (191)
Q Consensus 121 ---~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~-~l~~~~~~l~~~~~ifaiiG~~lF~g 182 (191)
..+...-++..+|++.+.+.++.+--+..++.+.+. .+..++++++++++-||+....+|+.
T Consensus 467 ~~~~l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~ 532 (743)
T TIGR00870 467 IEEALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQY 532 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 012234455666777777777777778888888888 99999999999999999999999864
No 15
>KOG3609|consensus
Probab=95.30 E-value=0.21 Score=46.28 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=77.9
Q ss_pred cchhhhHH---HHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc---------cC-----------
Q psy14955 65 IESTEVIF---TGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID---------LG----------- 121 (191)
Q Consensus 65 ~~~~~~~~---~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~---------~~----------- 121 (191)
...+|.+. ..=++.|=+-.++..|. ..|+++.||++|+..+.+.+...... ..
T Consensus 383 p~~vE~li~~wV~G~iw~E~k~lw~~G~----~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~ 458 (822)
T KOG3609|consen 383 PQALEILIYLWVMGLIWEEIKELWRVGR----DGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPS 458 (822)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCC
Confidence 55566544 33345555666666664 59999999999999988877666540 00
Q ss_pred ---------chhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14955 122 ---------NLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDS 180 (191)
Q Consensus 122 ---------~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF 180 (191)
.+...-++-.+|++.+...++.+-=+.-++.+.+..+...+++..++++-|++=--+++
T Consensus 459 ~dp~ll~E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy 526 (822)
T KOG3609|consen 459 FDPSLLAEGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLY 526 (822)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHh
Confidence 13345567777777777777777777777888888888888888888788876544554
No 16
>KOG3614|consensus
Probab=94.37 E-value=0.66 Score=45.29 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=89.3
Q ss_pred eeCCCC--HHHHHHHHHhcccchHHHH---H--HHHHHHHHHHhcCCCCc---cchhhhHHHHHHHHHHHHHHHhcccc-
Q psy14955 22 VLDPFN--PIRRVAIYILVHPLFSLFI---I--TTILTNCILMIMPGTPT---IESTEVIFTGIYTFESAVKVMARGFI- 90 (191)
Q Consensus 22 ~~~~~~--~~r~~~~~iv~s~~f~~~i---~--~~I~~n~i~~~~~~~~~---~~~~~~~~~~iF~~E~~lki~a~G~~- 90 (191)
+++... +..++.+.+.+.|...... . +++.+-+..+.++..+. .+++=++....+++|-+=++...+-.
T Consensus 771 ~~~r~r~~~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvlLv~~~~~Ps~~Ew~~~~~iftl~~E~vRq~~~se~~~ 850 (1381)
T KOG3614|consen 771 VFPRPRPLGKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVLLVDFQPSPSMWEWILFAWIFTLFLEEVRQIFISESGL 850 (1381)
T ss_pred ccCCCCchhHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHheeccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCcc
Confidence 555433 3667777888887422221 1 11111222233343333 66666666677777877766543210
Q ss_pred cc--ccccccccccchhHHHHHHHHHHHhhccC---chhH-------HHHHHHhhhhhccccchhHHHHHHHHHHHHHHH
Q psy14955 91 LE--SFTYLRDAWNWLDFIVIALAYVTMGIDLG---NLAA-------LRTFRVLRALKTVAIVPGLKTIVGAVIESVKNL 158 (191)
Q Consensus 91 ~~--~~~y~~~~wn~~D~i~i~~~~~~~~~~~~---~~~~-------lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l 158 (191)
.. -.-|+.+.||..|.+++....++.+.... .+.. --++=.+|++-.+...+.+-=-+.-+.+-++.+
T Consensus 851 l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dm 930 (1381)
T KOG3614|consen 851 LPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKDM 930 (1381)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHHH
Confidence 01 12399999999999999999998877222 1111 122333445555555554443333345677788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14955 159 RDVIILTMFSLSVFALMG 176 (191)
Q Consensus 159 ~~~~~~l~~~~~ifaiiG 176 (191)
..+++++++.++.||+.-
T Consensus 931 f~flfllaV~LlsfGVar 948 (1381)
T KOG3614|consen 931 FFFLFLLAVVLLSFGVAR 948 (1381)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 888888888888888753
No 17
>KOG1545|consensus
Probab=93.44 E-value=0.26 Score=41.81 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy14955 125 ALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESHD 190 (191)
Q Consensus 125 ~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~~~~~~ 190 (191)
.+|++|+.|++|+.+.++. ..-++-+.+++++-+.=+.++.++++ +|+-||..-++..+.|
T Consensus 325 ILRViRLVRVFRIFKLSRH-SkGLQILGqTl~aSmrElgLLIFFlf----IgviLFsSavYFAEad 385 (507)
T KOG1545|consen 325 ILRVIRLVRVFRIFKLSRH-SKGLQILGQTLRASMRELGLLIFFLF----IGVILFSSAVYFAEAD 385 (507)
T ss_pred HHHHHHHHHHhhheeeccc-cchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhceeeeeecC
Confidence 5777778888887777776 45666778898888877777666554 6888898777655444
No 18
>KOG1420|consensus
Probab=93.13 E-value=0.056 Score=48.35 Aligned_cols=74 Identities=16% Similarity=0.332 Sum_probs=52.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhH
Q psy14955 65 IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGL 144 (191)
Q Consensus 65 ~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l 144 (191)
...+|..|.++|.+-+.+|.+| +.++.-|+-..+.++|++.+-++++..-.+- +.-.+|.+ |.+|++....-+
T Consensus 164 tqqidlafnifflvyffirfia---asdklwf~lemys~vdfftippsfvsiyl~r-~wlglrfl---ralrlmtvpdil 236 (1103)
T KOG1420|consen 164 TQQIDLAFNIFFLVYFFIRFIA---ASDKLWFWLEMYSVVDFFTIPPSFVSIYLNR-SWLGLRFL---RALRLMTVPDIL 236 (1103)
T ss_pred HHHhhhHhhHHHHHHHHHHHhh---cccceeeeeehhhheeeeecCchheEEEecc-chHHHHHH---HHHHhccHHHHH
Confidence 6678999999999999999999 6678889999999999999888887654322 22234444 444444444333
Q ss_pred H
Q psy14955 145 K 145 (191)
Q Consensus 145 ~ 145 (191)
+
T Consensus 237 q 237 (1103)
T KOG1420|consen 237 Q 237 (1103)
T ss_pred H
Confidence 3
No 19
>KOG0498|consensus
Probab=92.01 E-value=1.8 Score=40.31 Aligned_cols=82 Identities=17% Similarity=0.405 Sum_probs=52.4
Q ss_pred EeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcC----CC----------C--ccchhhhHHHHHHHHHHHHHH
Q psy14955 21 WVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP----GT----------P--TIESTEVIFTGIYTFESAVKV 84 (191)
Q Consensus 21 ~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~----~~----------~--~~~~~~~~~~~iF~~E~~lki 84 (191)
++..|.+++++. ++.++++..+.+++..-++ .. . .+..++.+.-++|+++++++.
T Consensus 68 ~Ii~P~s~~~~~---------W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~F 138 (727)
T KOG0498|consen 68 WILDPYSPFYRV---------WNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNF 138 (727)
T ss_pred eeECCCChHHHH---------HHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhh
Confidence 355555555443 5556666666655543221 11 1 177899999999999999998
Q ss_pred Hhc-------cccccc----cccccccccchhHHHHHHH
Q psy14955 85 MAR-------GFILES----FTYLRDAWNWLDFIVIALA 112 (191)
Q Consensus 85 ~a~-------G~~~~~----~~y~~~~wn~~D~i~i~~~ 112 (191)
... ....+| .+|++ .|=++|++++++.
T Consensus 139 rtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~ 176 (727)
T KOG0498|consen 139 RTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPF 176 (727)
T ss_pred eEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcCh
Confidence 642 111222 35888 8999999988874
No 20
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=71.00 E-value=25 Score=25.85 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=28.5
Q ss_pred CchhHHHHHHHhhhhhccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955 121 GNLAALRTFRVLRALKTVAIVPGL-KTIVGAVIESVKNLRDVIILTMFSLSV 171 (191)
Q Consensus 121 ~~~~~lr~~R~lR~~rl~~~~~~l-~~l~~~l~~s~~~l~~~~~~l~~~~~i 171 (191)
...+.+|.+|.+|.+|..+..+.. +.+.++..+...-..-...++..+..+
T Consensus 63 ~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~ 114 (200)
T PF00520_consen 63 RIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACI 114 (200)
T ss_dssp HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeccccccccccccccccccccccccccccccccccccccccccccch
Confidence 456677777888888888765554 455544444444444434444433333
No 21
>KOG0501|consensus
Probab=64.59 E-value=34 Score=31.41 Aligned_cols=98 Identities=16% Similarity=0.296 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHHHHhcC----CCC--c--cchhhhHHHHHHHHHHHHHHHhc--c--c--cccc----ccccccccc
Q psy14955 41 LFSLFIITTILTNCILMIMP----GTP--T--IESTEVIFTGIYTFESAVKVMAR--G--F--ILES----FTYLRDAWN 102 (191)
Q Consensus 41 ~f~~~i~~~I~~n~i~~~~~----~~~--~--~~~~~~~~~~iF~~E~~lki~a~--G--~--~~~~----~~y~~~~wn 102 (191)
.+++.++++.+--++.+... +.. . ...+|-+.-++|.+++++..-.- | - ..+| -.|+++ |-
T Consensus 219 ~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs-WF 297 (971)
T KOG0501|consen 219 IWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WF 297 (971)
T ss_pred HHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-HH
Confidence 37787777777655543221 111 1 56678888899999999987431 1 0 0111 246654 77
Q ss_pred chhHHHHHHHHHHHhh---ccC---chhHHHHHHHhhhhhccc
Q psy14955 103 WLDFIVIALAYVTMGI---DLG---NLAALRTFRVLRALKTVA 139 (191)
Q Consensus 103 ~~D~i~i~~~~~~~~~---~~~---~~~~lr~~R~lR~~rl~~ 139 (191)
++|++..++.=+-... +-+ .++.+.+.|++|.-|..|
T Consensus 298 vIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaR 340 (971)
T KOG0501|consen 298 VIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVAR 340 (971)
T ss_pred HHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 8998876665333222 111 134455555555544443
No 22
>PRK10537 voltage-gated potassium channel; Provisional
Probab=56.78 E-value=1.1e+02 Score=26.60 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=36.9
Q ss_pred CchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14955 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSD 186 (191)
Q Consensus 121 ~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~~ 186 (191)
.....++.+-++++..+..+.+...+...+.. .-+.+..+.....|+++|...+++.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f~~ 164 (393)
T PRK10537 105 PWLKFLIGYCIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGDGFSP 164 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccccCc
Confidence 34556667777777777777666655522221 2333444455668999998888875543
No 23
>KOG3713|consensus
Probab=56.53 E-value=17 Score=32.16 Aligned_cols=53 Identities=19% Similarity=0.141 Sum_probs=23.2
Q ss_pred HHHHhhhhhccccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14955 128 TFRVLRALKTVAIVPGLK--TIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKK 184 (191)
Q Consensus 128 ~~R~lR~~rl~~~~~~l~--~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~ 184 (191)
++|++|++|++|..+-.| .-++++..++++-..=+.++ .+|-.+|+-+|..-.
T Consensus 309 vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglL----llfL~~GI~iFStlv 363 (477)
T KOG3713|consen 309 VVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLL----LLFLAVGIVIFSTLV 363 (477)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 344444444444444333 33444444444444333332 333455666665444
No 24
>KOG0510|consensus
Probab=48.96 E-value=74 Score=30.33 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=60.0
Q ss_pred cccccccccccccchhHHHHHHHHHHHhhccC-c---hh-HHH----HHHHhhhhhccccchhHHHHHHHHHHHHHHHHH
Q psy14955 90 ILESFTYLRDAWNWLDFIVIALAYVTMGIDLG-N---LA-ALR----TFRVLRALKTVAIVPGLKTIVGAVIESVKNLRD 160 (191)
Q Consensus 90 ~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~-~---~~-~lr----~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~ 160 (191)
+..|.+|+-+.-|+.|-++...+++....... . .. .+. .+-..+.+-+++++|.....+.-+..-.+++..
T Consensus 585 fqqk~~Y~~~i~Nimew~iyts~li~v~~~~~~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk 664 (929)
T KOG0510|consen 585 FQQKRHYFMDIENIMEWFIYTSALITVYPLFFEITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLK 664 (929)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhhhheeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHH
Confidence 45788999999999999988887765443221 1 11 111 223345556667777666555555556666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q psy14955 161 VIILTMFSLSVFALMGLQDSRGK 183 (191)
Q Consensus 161 ~~~~l~~~~~ifaiiG~~lF~g~ 183 (191)
.+.+..+++.-|++--.-+|+.+
T Consensus 665 ~f~vfs~lliaF~lsFYVll~~~ 687 (929)
T KOG0510|consen 665 SFMVFSILLIAFGLSFYVLLNKS 687 (929)
T ss_pred HHHHHHHHHHHhhhhheeeecCC
Confidence 77777777777777666566544
No 25
>KOG0500|consensus
Probab=46.70 E-value=59 Score=29.05 Aligned_cols=106 Identities=16% Similarity=0.214 Sum_probs=58.2
Q ss_pred cchhhhHHHHHHHHHHHHHHH----hcccccc-----ccccccccccchhHHHHHHHHHHHhhccCchhHHHHHHHhhhh
Q psy14955 65 IESTEVIFTGIYTFESAVKVM----ARGFILE-----SFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRAL 135 (191)
Q Consensus 65 ~~~~~~~~~~iF~~E~~lki~----a~G~~~~-----~~~y~~~~wn~~D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~ 135 (191)
...+|+.+=.+|.++++++.- ..|..-. ..+|+++..-.+|.+.+++.=..++.. +.....|..|.+|+.
T Consensus 31 wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~-~~~~~~r~nRllk~y 109 (536)
T KOG0500|consen 31 WLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKD-GSASLERLNRLLKIY 109 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcC-CcchHHHHHHHHHHH
Confidence 567888899999999998763 3343211 246777777778888777754333322 233344455555555
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955 136 KTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMG 176 (191)
Q Consensus 136 rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG 176 (191)
|+...+...+. ....|.+..+.-+...++.+|=.=|
T Consensus 110 Rl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNa 145 (536)
T KOG0500|consen 110 RLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNA 145 (536)
T ss_pred HHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhh
Confidence 55443322111 2334555544444444444444333
No 26
>KOG3533|consensus
Probab=46.66 E-value=1.5e+02 Score=30.38 Aligned_cols=50 Identities=10% Similarity=0.196 Sum_probs=38.9
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14955 136 KTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKS 185 (191)
Q Consensus 136 rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~ 185 (191)
-++-+=+.+..++++.-+--+++...+++.++++|.|+++|.-+|+..+.
T Consensus 2400 DliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~ 2449 (2706)
T KOG3533|consen 2400 DLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFY 2449 (2706)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceE
Confidence 34444456666777766667778888889999999999999999988764
No 27
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=34.09 E-value=70 Score=18.65 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy14955 163 ILTMFSLSVFALMGLQDSRG 182 (191)
Q Consensus 163 ~~l~~~~~ifaiiG~~lF~g 182 (191)
+-..+++.+||-+|+..+++
T Consensus 9 FsvvIil~If~~iGl~IyQk 28 (49)
T PF11044_consen 9 FSVVIILGIFAWIGLSIYQK 28 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33446667889999988764
No 28
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=33.18 E-value=79 Score=20.38 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14955 155 VKNLRDVIILTMFSLSVFALMGLQDSRG 182 (191)
Q Consensus 155 ~~~l~~~~~~l~~~~~ifaiiG~~lF~g 182 (191)
+.++..+++++.+.+.+.|++|...++-
T Consensus 3 vS~viGviLliaitVilaavv~~~~~~~ 30 (80)
T PF07790_consen 3 VSPVIGVILLIAITVILAAVVGAFVFGL 30 (80)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456777888888899999999999976
No 29
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=29.95 E-value=1.3e+02 Score=18.02 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCC
Q psy14955 169 LSVFALMGLQDSRGKKSDESHDK 191 (191)
Q Consensus 169 ~~ifaiiG~~lF~g~~~~~~~~k 191 (191)
+.+.++.-+..-+++-+.|+.|+
T Consensus 13 ~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 13 MGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHHHhhccccccccCC
Confidence 33333444455667777777653
No 30
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=25.61 E-value=2.1e+02 Score=27.18 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=3.5
Q ss_pred HHHhhhhhc
Q psy14955 129 FRVLRALKT 137 (191)
Q Consensus 129 ~R~lR~~rl 137 (191)
+|++|++|+
T Consensus 171 l~llrl~Rl 179 (823)
T PLN03192 171 LGLLRFWRL 179 (823)
T ss_pred HHHHHHHHH
Confidence 333333333
No 31
>KOG1734|consensus
Probab=20.53 E-value=5e+02 Score=21.55 Aligned_cols=43 Identities=14% Similarity=-0.003 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14955 143 GLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKS 185 (191)
Q Consensus 143 ~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~ 185 (191)
..-+++..-...+-.+.+++.++.....+||..|+++.=+...
T Consensus 131 ~tpRlVYkwFl~lyklSy~~g~vGyl~im~~~~g~n~~F~~~~ 173 (328)
T KOG1734|consen 131 DTPRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFGLNFTFFYLK 173 (328)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeEEeecc
Confidence 3344444446778888889999998889999999887544433
Done!