Query psy14955
Match_columns 191
No_of_seqs 131 out of 1060
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 16:46:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rvy_A ION transport protein; 99.9 2.6E-27 8.8E-32 193.0 12.4 155 22-184 12-174 (285)
2 4dxw_A Navrh, ION transport pr 99.9 1.1E-27 3.9E-32 189.4 7.8 149 32-184 4-159 (229)
3 2r9r_B Paddle chimera voltage 99.9 2.1E-21 7.2E-26 169.8 15.2 156 24-182 159-367 (514)
4 1ors_C Potassium channel; volt 99.8 2.9E-21 1E-25 140.5 4.9 119 36-159 2-130 (132)
5 3beh_A MLL3241 protein; transm 99.7 1.2E-16 4.2E-21 133.3 10.4 140 38-182 6-153 (355)
6 2kyh_A KVAP, voltage-gated pot 99.6 3.1E-16 1.1E-20 115.7 6.8 125 26-155 7-141 (147)
7 1orq_C Potassium channel; volt 99.6 1.4E-15 4.7E-20 119.3 8.6 142 34-183 2-157 (223)
8 4f4l_A ION transport protein; 96.8 0.00087 3E-08 46.5 3.1 31 154-184 2-32 (112)
9 1qg9_A Protein (sodium channel 96.3 0.0017 5.7E-08 32.9 1.6 23 68-90 2-24 (26)
10 2lcm_A Voltage-dependent N-typ 95.5 0.0021 7.3E-08 33.2 -0.2 25 121-145 4-28 (28)
11 2a9h_A Voltage-gated potassium 95.1 0.026 8.8E-07 41.3 4.6 64 100-184 14-77 (155)
12 2ih3_C Voltage-gated potassium 90.7 0.4 1.4E-05 33.2 4.9 20 165-184 35-54 (122)
13 2r9r_B Paddle chimera voltage 87.2 1.8 6E-05 37.5 7.5 22 97-118 237-258 (514)
14 4dxw_A Navrh, ION transport pr 83.2 2.1 7.2E-05 32.5 5.5 52 122-173 100-151 (229)
15 3rvy_A ION transport protein; 74.5 3 0.0001 32.7 4.0 21 123-143 116-136 (285)
16 1orq_C Potassium channel; volt 63.4 7.9 0.00027 29.0 4.1 22 97-118 37-58 (223)
17 3beh_A MLL3241 protein; transm 45.3 21 0.00071 28.6 4.0 25 123-147 97-121 (355)
18 1ors_C Potassium channel; volt 37.1 28 0.00097 23.9 3.2 21 98-118 36-56 (132)
19 2kyh_A KVAP, voltage-gated pot 33.8 26 0.0009 24.7 2.6 20 99-118 52-71 (147)
20 2q67_A Potassium channel prote 20.5 1.9E+02 0.0065 19.0 5.2 22 161-182 26-47 (114)
21 3g9r_A Fusion complex of HIV-1 20.5 13 0.00046 20.1 -0.8 11 97-107 5-15 (42)
No 1
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.95 E-value=2.6e-27 Score=192.97 Aligned_cols=155 Identities=26% Similarity=0.428 Sum_probs=139.0
Q ss_pred eeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccc
Q psy14955 22 VLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILES 93 (191)
Q Consensus 22 ~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~ 93 (191)
..+|.+++|++|+++++|++|+.++.++|++|++.++.++++. +..+|.+++++|++|+++|+++.|.
T Consensus 12 ~~p~~~~~r~~~~~i~~~~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~~~---- 87 (285)
T 3rvy_A 12 LVPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRI---- 87 (285)
T ss_dssp -------CHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTGG----
T ss_pred cCCCchHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence 3456666999999999999999999999999999999999884 7789999999999999999999883
Q ss_pred cccccccccchhHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955 94 FTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFA 173 (191)
Q Consensus 94 ~~y~~~~wn~~D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa 173 (191)
+|++++||++|++++++++++.. ..++.+|++|++|++|+.++.++++.+..++.++.|++.+++.++++++++||
T Consensus 88 -~y~~~~wn~~Dl~~v~~~~i~~~---~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa 163 (285)
T 3rvy_A 88 -SFFKDPWSLFDFFVVAISLVPTS---SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFA 163 (285)
T ss_dssp -GGGGCHHHHHHHHHHHHHHSCSS---SSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred -HHHcCChHHhHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887643 46789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC
Q psy14955 174 LMGLQDSRGKK 184 (191)
Q Consensus 174 iiG~~lF~g~~ 184 (191)
++|+++|+|..
T Consensus 164 ~~g~~~f~~~~ 174 (285)
T 3rvy_A 164 IMATQLFGERF 174 (285)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHhCccc
Confidence 99999998865
No 2
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.94 E-value=1.1e-27 Score=189.36 Aligned_cols=149 Identities=20% Similarity=0.402 Sum_probs=124.6
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc-------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccch
Q psy14955 32 VAIYILVHPLFSLFIITTILTNCILMIMPGTPT-------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWL 104 (191)
Q Consensus 32 ~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~-------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~ 104 (191)
+++++++|++|+.++.++|++|++.++.|+++. ++.+|.+++.+|++|+++|+++.| +|.+|++|+||++
T Consensus 4 ~~~~iv~~~~f~~~i~~~I~ln~i~l~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~~---~~~~y~~~~wni~ 80 (229)
T 4dxw_A 4 FFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEILIRFIGEK---QKADFFKSGWNIF 80 (229)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHHHSTTTCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---chhHHhcCCcHHH
Confidence 578899999999999999999999999999775 778999999999999999999976 5679999999999
Q ss_pred hHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14955 105 DFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKK 184 (191)
Q Consensus 105 D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~ 184 (191)
|++++++++++...+ ...+.+|.+|++|++|+.|+.+++|.+.+++.+|.|++.+++.++++++++||++|+++|+|..
T Consensus 81 D~~~v~~~~i~~~~~-~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~ 159 (229)
T 4dxw_A 81 DTVIVAISLIPIPNN-SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDD 159 (229)
T ss_dssp HHHHHHHTTCC---------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHhhcCcc-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999888765422 2345678999999999999999999999999999999999999999999999999999999864
No 3
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.87 E-value=2.1e-21 Score=169.77 Aligned_cols=156 Identities=19% Similarity=0.276 Sum_probs=136.9
Q ss_pred CCCCHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhcCCCCc--------------------------------
Q psy14955 24 DPFNPIRRVAIYILVHP-------LFSLFIITTILTNCILMIMPGTPT-------------------------------- 64 (191)
Q Consensus 24 ~~~~~~r~~~~~iv~s~-------~f~~~i~~~I~~n~i~~~~~~~~~-------------------------------- 64 (191)
.|++++|++++.++++| .|+.++.++|++|++.+++++.+.
T Consensus 159 ~p~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2r9r_B 159 LPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFT 238 (514)
T ss_dssp CCSCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCC
T ss_pred CchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhh
Confidence 47899999999999984 799999999999999999988642
Q ss_pred --cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc------------cCchhHHHHHH
Q psy14955 65 --IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID------------LGNLAALRTFR 130 (191)
Q Consensus 65 --~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~------------~~~~~~lr~~R 130 (191)
+..+|.+|.++|++|+++|+++.| ++.+|++++||++|+++++++++..... ...++.+|++|
T Consensus 239 ~~l~~ie~i~~~iFtiE~ilR~~~~~---~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllR 315 (514)
T 2r9r_B 239 DPFFIVETLCIIWFSFEFLVRFFACP---SKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMR 315 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSS---CSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Confidence 446899999999999999999965 5679999999999999999999887652 22467888888
Q ss_pred HhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14955 131 VLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRG 182 (191)
Q Consensus 131 ~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g 182 (191)
++|++|+.++.++++.+..++.++.+++..+++++++.+.+||.++....++
T Consensus 316 vlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~ 367 (514)
T 2r9r_B 316 ILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAD 367 (514)
T ss_dssp GGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecc
Confidence 8999999999999999999999999999999999999999999998876543
No 4
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.83 E-value=2.9e-21 Score=140.51 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=105.7
Q ss_pred HhcccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHH
Q psy14955 36 ILVHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFI 107 (191)
Q Consensus 36 iv~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i 107 (191)
+++++.|+..+.++|++|++.+++|++++ +..+|.+++++|++|+++|+++ +++|.+|++ ||++|++
T Consensus 2 ~v~~~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~---~~~~~~y~~--~niiDll 76 (132)
T 1ors_C 2 VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK---SGDPAGYVK--KTLYEIP 76 (132)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTSTTTTTT--TCGGGTG
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHH--HHHHHHH
Confidence 57899999999999999999999988764 6679999999999999999999 557889999 9999999
Q ss_pred HHHHHHHHHhhc--cCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Q psy14955 108 VIALAYVTMGID--LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLR 159 (191)
Q Consensus 108 ~i~~~~~~~~~~--~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~ 159 (191)
++++++++...+ ...++.+|++|++|++|+.|+.++++.+.+++.+|.+++.
T Consensus 77 ailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~~l~ 130 (132)
T 1ors_C 77 ALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKLV 130 (132)
T ss_dssp GGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999998877542 2346678999999999999999999999999999999874
No 5
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.68 E-value=1.2e-16 Score=133.29 Aligned_cols=140 Identities=13% Similarity=0.115 Sum_probs=117.0
Q ss_pred cccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHH
Q psy14955 38 VHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVI 109 (191)
Q Consensus 38 ~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i 109 (191)
+|+.|+.++.++|++|++.+++++.++ ++.++.++...|++|+.+|+.+. .++..|++++||++|++++
T Consensus 6 ~s~~f~~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~~~~~~~~~~~i~Dl~~i 82 (355)
T 3beh_A 6 FLRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR---RAGVVRDRTPKIAIDVLAV 82 (355)
T ss_dssp -CCSSSSHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CSCSSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cccceeccCcchHHHHHHH
Confidence 356899999999999999999998886 45566677777999999999773 3455689999999999998
Q ss_pred HHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14955 110 ALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRG 182 (191)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g 182 (191)
++.+.... ..+.+.+|.+|++|++|+.|..++++.+.+++.++.+++..++.+++++++++|.+++.+.++
T Consensus 83 ~~p~~~~~--~~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~ 153 (355)
T 3beh_A 83 LVPLAAFL--LDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERD 153 (355)
T ss_dssp HHHHHHHH--SCCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH--hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 64444332 234567888899999999999999999999999999999999999999999999999888765
No 6
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=99.64 E-value=3.1e-16 Score=115.72 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccccccc
Q psy14955 26 FNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILESFTYL 97 (191)
Q Consensus 26 ~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~ 97 (191)
..++|+++++++++|.|+..+.+++++|++.+..|+.+. +..+|.++.++|++|+++|+++ +++|.+|+
T Consensus 7 ~~~~~~~~~~~~e~~~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~---a~~k~~f~ 83 (147)
T 2kyh_A 7 LGGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK---SGDPAGYV 83 (147)
T ss_dssp CSHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH---CCcHHHHH
Confidence 456899999999999999999999999999998876553 6789999999999999999999 56888999
Q ss_pred cccccchhHHHHHHHHHHHhhc--cCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Q psy14955 98 RDAWNWLDFIVIALAYVTMGID--LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESV 155 (191)
Q Consensus 98 ~~~wn~~D~i~i~~~~~~~~~~--~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~ 155 (191)
++ |++|++++++.......+ ...++.+|++|++|.+|+.+..+..+.+.+++.+-.
T Consensus 84 ~~--~iiDllailP~~~~~~~~~~lr~lRvlRllRv~Rllrl~r~~~~~~~l~~al~~f~ 141 (147)
T 2kyh_A 84 KK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAA 141 (147)
T ss_dssp HH--STTTHHHHCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 999999998888766541 233445555566666666666666666666655433
No 7
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.61 E-value=1.4e-15 Score=119.32 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=104.6
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchh
Q psy14955 34 IYILVHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLD 105 (191)
Q Consensus 34 ~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D 105 (191)
++++++|+||.++.+++++|++.++.|+.+. +..+|.++..+|++|+++|..+. .++.+|+++ |++|
T Consensus 2 ~~~~~~~~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~---~~~~~y~~~--~iiD 76 (223)
T 1orq_C 2 GDVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS---GDPAGYVKK--TLYE 76 (223)
T ss_dssp TTTCCSHHHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT---SCHHHHHHH--HHHH
T ss_pred hhHHhCchHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccc---ccHHHHHHH--hHHH
Confidence 4678999999999999999999888775331 77899999999999999999994 467899998 9999
Q ss_pred HHHHHHHHHHHhh--c---cCchhHHHHHHHhhhhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955 106 FIVIALAYVTMGI--D---LGNLAALRTFRVLRALKTVAIV-PGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQD 179 (191)
Q Consensus 106 ~i~i~~~~~~~~~--~---~~~~~~lr~~R~lR~~rl~~~~-~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~l 179 (191)
++++++..+.... + ...++.+|++|++|++|+.+.. +..+.+.+++.+ +.+...+.+++..+.++| .+++.
T Consensus 77 llailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~~~~~~~-~~~~~ 153 (223)
T 1orq_C 77 IPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADK--IRFYHLFGAVMLTVLYGA-FAIYI 153 (223)
T ss_dssp CTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHH
Confidence 9999998876532 1 2346677777777777776633 334555555433 345556666656555555 55677
Q ss_pred hcCC
Q psy14955 180 SRGK 183 (191)
Q Consensus 180 F~g~ 183 (191)
.++.
T Consensus 154 ~e~~ 157 (223)
T 1orq_C 154 VEYP 157 (223)
T ss_dssp TTSS
T ss_pred HHhC
Confidence 7664
No 8
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=96.76 E-value=0.00087 Score=46.50 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14955 154 SVKNLRDVIILTMFSLSVFALMGLQDSRGKK 184 (191)
Q Consensus 154 s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~ 184 (191)
|.+.+++++.++++++++||++|+++||+..
T Consensus 2 s~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~ 32 (112)
T 4f4l_A 2 SHMGVGSVAALLTVVFYIAAVMATNLYGATF 32 (112)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 5677899999999999999999999998875
No 9
>1qg9_A Protein (sodium channel protein, brain II alpha subunit); transmembrane sodium channel, structure, transmembrane channel; NMR {Synthetic} SCOP: j.35.1.1
Probab=96.31 E-value=0.0017 Score=32.90 Aligned_cols=23 Identities=57% Similarity=0.891 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcccc
Q psy14955 68 TEVIFTGIYTFESAVKVMARGFI 90 (191)
Q Consensus 68 ~~~~~~~iF~~E~~lki~a~G~~ 90 (191)
.|+.++++|++|+++|++|.|+.
T Consensus 2 ~e~~F~~IYtfE~liKi~ArGf~ 24 (26)
T 1qg9_A 2 VEYTFTGIYTFESLIKILARXXX 24 (26)
T ss_dssp CSCCHHHHHHHHHHHHHHTC---
T ss_pred ceEEeeHHHHHHHHHHHHHhhhc
Confidence 47789999999999999999864
No 10
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=95.48 E-value=0.0021 Score=33.19 Aligned_cols=25 Identities=48% Similarity=0.769 Sum_probs=20.9
Q ss_pred CchhHHHHHHHhhhhhccccchhHH
Q psy14955 121 GNLAALRTFRVLRALKTVAIVPGLK 145 (191)
Q Consensus 121 ~~~~~lr~~R~lR~~rl~~~~~~l~ 145 (191)
+.++.+|.+|++|++|.+..+++++
T Consensus 4 ~~l~~lrtlR~LRpLr~isr~~gmk 28 (28)
T 2lcm_A 4 NTIKSLRVLRVLRPLKTIKRLPKLK 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred chhhHHHHHHHhcchHHHhhcccCC
Confidence 4577899999999999999888753
No 11
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.12 E-value=0.026 Score=41.25 Aligned_cols=64 Identities=6% Similarity=-0.179 Sum_probs=14.8
Q ss_pred cccchhHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955 100 AWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQD 179 (191)
Q Consensus 100 ~wn~~D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~l 179 (191)
.+++.|++.+++ .++.+|++|++|++ +.|+. .++.+ .....+++.+++..+.+..+++.
T Consensus 14 ~~~~~dli~~lp----------~lr~lRllRi~ril-l~r~~-------~~l~~---~~~~~~~~~~~~~i~~~a~~~~~ 72 (155)
T 2a9h_A 14 IEGRGRLIKHMP----------PMLSGLLARLVKLL-LGRHG-------SALHW---RAAGAATVLLVIVLLAGSYLAVL 72 (155)
T ss_dssp --------------------------------------------------CCHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH----------HHHHHHHHHHHHHH-HHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688886554 24455555555555 33331 12222 12222333334444556667777
Q ss_pred hcCCC
Q psy14955 180 SRGKK 184 (191)
Q Consensus 180 F~g~~ 184 (191)
.++..
T Consensus 73 ~E~~~ 77 (155)
T 2a9h_A 73 AERGA 77 (155)
T ss_dssp HHTTS
T ss_pred HhccC
Confidence 77654
No 12
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=90.68 E-value=0.4 Score=33.22 Aligned_cols=20 Identities=0% Similarity=-0.245 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q psy14955 165 TMFSLSVFALMGLQDSRGKK 184 (191)
Q Consensus 165 l~~~~~ifaiiG~~lF~g~~ 184 (191)
......+.+..+++..++..
T Consensus 35 ~~~~~~~~~a~~~~~~E~~~ 54 (122)
T 2ih3_C 35 LLVIVLLAGSYLAVLAERGA 54 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhheeeecC
Confidence 33444555666777777754
No 13
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=87.20 E-value=1.8 Score=37.49 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=17.6
Q ss_pred ccccccchhHHHHHHHHHHHhh
Q psy14955 97 LRDAWNWLDFIVIALAYVTMGI 118 (191)
Q Consensus 97 ~~~~wn~~D~i~i~~~~~~~~~ 118 (191)
+.+.|..+|.+.++...++.+.
T Consensus 237 ~~~~l~~ie~i~~~iFtiE~il 258 (514)
T 2r9r_B 237 FTDPFFIVETLCIIWFSFEFLV 258 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4667888999988888887776
No 14
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=83.17 E-value=2.1 Score=32.45 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=33.3
Q ss_pred chhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955 122 NLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFA 173 (191)
Q Consensus 122 ~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa 173 (191)
.++.+|++|++|..|..+..+.+-..+..-.+++..+..++.++....-+.+
T Consensus 100 ~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g 151 (229)
T 4dxw_A 100 VLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMG 151 (229)
T ss_dssp CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777766555555545666666666666655544443
No 15
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=74.50 E-value=3 Score=32.72 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=9.7
Q ss_pred hhHHHHHHHhhhhhccccchh
Q psy14955 123 LAALRTFRVLRALKTVAIVPG 143 (191)
Q Consensus 123 ~~~lr~~R~lR~~rl~~~~~~ 143 (191)
++.+|++|++|..|..+..+.
T Consensus 116 lr~~RilR~lrl~~~~~~l~~ 136 (285)
T 3rvy_A 116 LRVLRVLRLFRLVTAVPQMRK 136 (285)
T ss_dssp HHHHGGGGGGHHHHSSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 16
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=63.36 E-value=7.9 Score=28.99 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=16.1
Q ss_pred ccccccchhHHHHHHHHHHHhh
Q psy14955 97 LRDAWNWLDFIVIALAYVTMGI 118 (191)
Q Consensus 97 ~~~~wn~~D~i~i~~~~~~~~~ 118 (191)
..+.|..+|.+......++...
T Consensus 37 ~~~~l~~~d~~~~~iF~~e~~l 58 (223)
T 1orq_C 37 YLVRLYLVDLILVIILWADYAY 58 (223)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4567778888887777777664
No 17
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=45.32 E-value=21 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=14.6
Q ss_pred hhHHHHHHHhhhhhccccchhHHHH
Q psy14955 123 LAALRTFRVLRALKTVAIVPGLKTI 147 (191)
Q Consensus 123 ~~~lr~~R~lR~~rl~~~~~~l~~l 147 (191)
++.+|++|++|..|..+..+.+...
T Consensus 97 ~r~lr~~R~lrl~r~~~~~~~l~~~ 121 (355)
T 3beh_A 97 WSLYCAVWLLKPLRDSTFFPVLGRV 121 (355)
T ss_dssp GGGGGGGGGSHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655554443
No 18
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=37.13 E-value=28 Score=23.86 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=14.3
Q ss_pred cccccchhHHHHHHHHHHHhh
Q psy14955 98 RDAWNWLDFIVIALAYVTMGI 118 (191)
Q Consensus 98 ~~~wn~~D~i~i~~~~~~~~~ 118 (191)
.+.++.+|.+.+....+++..
T Consensus 36 ~~~l~~~d~~~~~iFt~E~~l 56 (132)
T 1ors_C 36 LVRLYLVDLILVIILWADYAY 56 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666787777777776665
No 19
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=33.80 E-value=26 Score=24.71 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=14.4
Q ss_pred ccccchhHHHHHHHHHHHhh
Q psy14955 99 DAWNWLDFIVIALAYVTMGI 118 (191)
Q Consensus 99 ~~wn~~D~i~i~~~~~~~~~ 118 (191)
+.+..+|.++.....+++..
T Consensus 52 ~~~~~id~~~~~iF~~Ey~l 71 (147)
T 2kyh_A 52 VRLYLVDLILVIILWADYAY 71 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34667888888877777665
No 20
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=20.52 E-value=1.9e+02 Score=18.98 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy14955 161 VIILTMFSLSVFALMGLQDSRG 182 (191)
Q Consensus 161 ~~~~l~~~~~ifaiiG~~lF~g 182 (191)
...+++....+++.++....+|
T Consensus 26 ~~~~~~~~~~~~g~~~~~~~e~ 47 (114)
T 2q67_A 26 VLFVLTILTLISGTIFYSTVEG 47 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3444445556677777776665
No 21
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=20.45 E-value=13 Score=20.13 Aligned_cols=11 Identities=27% Similarity=1.054 Sum_probs=8.8
Q ss_pred ccccccchhHH
Q psy14955 97 LRDAWNWLDFI 107 (191)
Q Consensus 97 ~~~~wn~~D~i 107 (191)
+.|.||+||..
T Consensus 5 Wa~lWnWFdIt 15 (42)
T 3g9r_A 5 WASLWNWFNIT 15 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHH
Confidence 56789999975
Done!