RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14955
(191 letters)
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 101 bits (253), Expect = 1e-26
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 16/169 (9%)
Query: 18 DALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIM--------PGTPTIESTE 69
D ++ + + I+ F+ FII I+ N I M +
Sbjct: 8 DKGSLVPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFN 67
Query: 70 VIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTF 129
I I+T E +++ ++ +D W+ DF V+A++ V LR
Sbjct: 68 QIVITIFTIEIILRIYVHRI-----SFFKDPWSLFDFFVVAISLVPTS---SGFEILRVL 119
Query: 130 RVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
RVLR + V VP ++ IV A+I + + VI L +FA+M Q
Sbjct: 120 RVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQ 168
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 91.2 bits (227), Expect = 3e-23
Identities = 31/157 (19%), Positives = 71/157 (45%), Gaps = 11/157 (7%)
Query: 29 IRRVAIYILVHPLFSLFIITTILTNCILMIM-------PGTPTIESTEVIFTGIYTFESA 81
+ + + +F +++ I+ N +L+ TI + T + E
Sbjct: 1 MTPFFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEIL 60
Query: 82 VKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIV 141
++ + + + WN D +++A++ + + + + LR R+ R L+ ++++
Sbjct: 61 IRFIGEKQ---KADFFKSGWNIFDTVIVAISLIPIPNN-SSFLVLRLLRIFRVLRLISVI 116
Query: 142 PGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
P LK I+ A++ESV+ + V +L L ++A MG
Sbjct: 117 PELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAI 153
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 54.9 bits (132), Expect = 2e-09
Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 13/141 (9%)
Query: 41 LFSLFIITTILTNCILMIMPGTPTIES--------TEVIFTGIYTFESAVKVMARGFILE 92
+++ + + P + + G Y + A ++ R +
Sbjct: 9 IYAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKRRAGVV 68
Query: 93 SFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVI 152
R +D + + + +D + + LK + + +
Sbjct: 69 ---RDRTPKIAIDVLAVLVPLAAFLLD--GSPDWSLYCAVWLLKPLRDSTFFPVLGRVLA 123
Query: 153 ESVKNLRDVIILTMFSLSVFA 173
+NL V L L A
Sbjct: 124 NEARNLIGVTTLFGVVLFAVA 144
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 46.5 bits (111), Expect = 9e-07
Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Query: 36 ILVHPLFSLFIITTILTNCILMIMPGTPTIEST--------EVIFTGIYTFESAVKVMAR 87
++ HPL L + L + I++++ T + ++I I + A +
Sbjct: 4 VMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS 63
Query: 88 GFILESFTYLRDAWNWLDFIVIALAYVTMGI--DLGNLAALRTFRVLRALKTVAIVPGLK 145
G + Y++ + + A + I L L R R+LR L+ + I+
Sbjct: 64 G---DPAGYVK--KTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGS 118
Query: 146 TIVGAVIESVKNLRDVIILTMFSLSVF 172
+ A+ ++ +R + L+V
Sbjct: 119 KFLSAIADAADKIRFYHLFGAVMLTVL 145
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 47.0 bits (111), Expect = 1e-06
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 62 TPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLG 121
T E + ++FE V+ A + + N +D + I YVT+ +
Sbjct: 238 TDPFFIVETLCIIWFSFEFLVRFFA---CPSKAGFFTNIMNIIDIVAIIPYYVTIFLTES 294
Query: 122 N------------LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSL 169
N + R R+LR K GL+ + + S++ L +I +
Sbjct: 295 NKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGV 354
Query: 170 SVFA 173
+F+
Sbjct: 355 ILFS 358
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 4e-05
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 74 GIYTFESAVK-VMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVL 132
+ + ES V+ V RG + RD ++ +IA+ + + AL+ V
Sbjct: 1775 DVMSIESLVEVVFYRG-MTMQVAVPRDELGRSNYGMIAINPGRVAASF-SQEALQYV-VE 1831
Query: 133 RALKT----VAIV----PGLKTIVGAVIESVKNLRDVI 162
R K V IV + + + ++ + +V+
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
>1qg9_A Protein (sodium channel protein, brain II alpha subunit);
transmembrane sodium channel, structure, transmembrane
channel; NMR {Synthetic} SCOP: j.35.1.1
Length = 26
Score = 33.4 bits (76), Expect = 0.003
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 67 STEVIFTGIYTFESAVKVMAR 87
+ E FTGIYTFES +K++AR
Sbjct: 1 NVEYTFTGIYTFESLIKILAR 21
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor
peptide, membrane protein; NMR {Homo sapiens}
Length = 28
Score = 29.6 bits (66), Expect = 0.064
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 119 DLGNLAALRTFRVLRALKTVAIVPGLK 145
D+ + +LR RVLR LKT+ +P LK
Sbjct: 2 DINTIKSLRVLRVLRPLKTIKRLPKLK 28
>2jq3_A Apolipoprotein C-III; APOCIII, structure, dynamics, receptor, lipid
binding protein; NMR {Homo sapiens}
Length = 79
Score = 27.6 bits (60), Expect = 0.74
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 79 ESAVKVMARGFILESFTYLRDAWN 102
ES V ARG++ + F+ L+D W+
Sbjct: 32 ESQVAQQARGWVTDGFSSLKDYWS 55
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 28.0 bits (62), Expect = 1.2
Identities = 17/114 (14%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 36 ILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFT 95
++ HPL L + L + I++++ T + + +Y + + ++ +
Sbjct: 17 VMEHPLVELGVSYAALLSVIVVVVEYTMQL--SGEYLVRLYLVDLILVII---LWADYAY 71
Query: 96 YLRDA--------WNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIV 141
+ + + + + + G+LA L FR++R L+ + I+
Sbjct: 72 RAYKSGDPAGYVKKTLYEIPAL-VPAGLLALIEGHLAGLGLFRLVRLLRFLRIL 124
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 25.3 bits (55), Expect = 8.4
Identities = 17/114 (14%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 36 ILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFT 95
++ HPL L + L + I++++ T + + +Y + + ++ +
Sbjct: 2 VMEHPLVELGVSYAALLSVIVVVVEYTMQL--SGEYLVRLYLVDLILVII---LWADYAY 56
Query: 96 YLRDA--------WNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIV 141
+ + + + + + G+LA L FR++R L+ + I+
Sbjct: 57 RAYKSGDPAGYVKKTLYEIPAL-VPAGLLALIEGHLAGLGLFRLVRLLRFLRIL 109
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 26.0 bits (57), Expect = 9.1
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 90 ILESFTYLRDAWNWLDFIVIALAY 113
I + + + ++ +V +LA
Sbjct: 100 IEDVANLIHQKYGKINMLVHSLAN 123
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 25.7 bits (57), Expect = 9.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 90 ILESFTYLRDAWNWLDFIVIALAY 113
I F L W LDF+V A+ +
Sbjct: 96 IDAVFETLEKKWGKLDFLVHAIGF 119
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 26.0 bits (58), Expect = 9.3
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 90 ILESFTYLRDAWNWLDFIVIALAY 113
I F +++ + I +A+
Sbjct: 74 IETCFASIKEQVGVIHGIAHCIAF 97
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 25.7 bits (57), Expect = 9.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 90 ILESFTYLRDAWNWLDFIVIALAY 113
+ F L + W LDF+V A+A+
Sbjct: 95 VDNMFKVLAEEWGSLDFVVHAVAF 118
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP
binding protein, PURP structural genomics, protein
structure initiative; HET: ATP; 2.50A {Thermococcus
kodakarensis} SCOP: c.30.1.8 d.142.1.9
Length = 320
Score = 25.7 bits (56), Expect = 9.8
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 1 TFVVVSKGKDIF--RFSATDALWVLDPFNPIRRV-AIYI 36
T + VS + F D L V + I I +
Sbjct: 27 TRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVV 65
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 25.6 bits (57), Expect = 9.9
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 90 ILESFTYLRDAWNWLDFIVIALAY 113
I F L W D V ++ +
Sbjct: 74 IDTMFAELGKVWPKFDGFVHSIGF 97
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 25.7 bits (57), Expect = 10.0
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 90 ILESFTYLRDAWNWLDFIVIALAY 113
++ F + +D + ++A+
Sbjct: 99 VINGFEQIGKDVGNIDGVYHSIAF 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.418
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,993,785
Number of extensions: 184115
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 29
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.8 bits)