RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14955
         (191 letters)



>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
           pernix [TaxId: 56636]}
          Length = 132

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 15/133 (11%)

Query: 36  ILVHPLFSLFIITTILTNCILMIM--------PGTPTIESTEVIFTGIYTFESAVKVMAR 87
           ++ HPL  L +    L + I++++             +   ++I   I   + A +    
Sbjct: 2   VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS 61

Query: 88  GFILESFTYLRDAWNWLDFIVIALAYVTMGI--DLGNLAALRTFRVLRALKTVAIVPGLK 145
           G                +   +  A +   I   L  L   R  R+LR L+ + I+    
Sbjct: 62  GDP-----AGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGS 116

Query: 146 TIVGAVIESVKNL 158
             + A+ ++   L
Sbjct: 117 KFLSAIADAADKL 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.142    0.418 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 704,112
Number of extensions: 31908
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.4 bits)