BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14956
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35500|SCNA_DROME Sodium channel protein para OS=Drosophila melanogaster GN=para PE=2
SV=3
Length = 2131
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Query: 1 MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
M+CVDILDALTKDFFARKGNPIEETG+ + E+ RPD GY+PVSSTLWRQREEYCARLI
Sbjct: 1936 MYCVDILDALTKDFFARKGNPIEETGE-IGEIAARPDTEGYEPVSSTLWRQREEYCARLI 1994
Query: 61 QHAWRKHKQCRAGG 74
QHAWRKHK GG
Sbjct: 1995 QHAWRKHKARGEGG 2008
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 79 SPGS-PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSRSAEC 121
SPG+ GR TAVLVESDGF KNGH+VVIHSRSPS TSR+A+
Sbjct: 2088 SPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV 2131
>sp|Q28371|SCN4A_HORSE Sodium channel protein type 4 subunit alpha OS=Equus caballus
GN=SCN4A PE=1 SV=1
Length = 1834
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 3 CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+DIL ALTK+ G + ++ET + + P + Y+P+++TL R++EE CA I
Sbjct: 1673 CLDILFALTKEVLGDSGEMDALKETME-EKFMAANPSKVSYEPITTTLKRKQEEVCAIKI 1731
Query: 61 QHAWRKHKQCRA 72
Q A+R+H R+
Sbjct: 1732 QRAYRRHLLQRS 1743
>sp|Q9ER60|SCN4A_MOUSE Sodium channel protein type 4 subunit alpha OS=Mus musculus GN=Scn4a
PE=2 SV=1
Length = 1841
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 3 CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+DIL ALTK+ G + +++T + + P + Y+P+++TL R++EE CA I
Sbjct: 1670 CLDILFALTKEVLGDSGEMDALKQTME-EKFMAANPSKVSYEPITTTLKRKQEEVCAIKI 1728
Query: 61 QHAWRKHKQCRA 72
Q A+R+H R+
Sbjct: 1729 QRAYRRHLLQRS 1740
>sp|P15390|SCN4A_RAT Sodium channel protein type 4 subunit alpha OS=Rattus norvegicus
GN=Scn4a PE=2 SV=1
Length = 1840
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 3 CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+DIL ALTK+ G + +++T + + P + Y+P+++TL R++EE CA I
Sbjct: 1669 CLDILFALTKEVLGDSGEMDALKQTME-EKFMAANPSKVSYEPITTTLKRKQEEVCAIKI 1727
Query: 61 QHAWRKHKQCRA 72
Q A+R+H R+
Sbjct: 1728 QRAYRRHLLQRS 1739
>sp|Q2XVR4|SC4AB_TETNG Sodium channel protein type 4 subunit alpha B OS=Tetraodon
nigroviridis GN=scn4ab PE=3 SV=1
Length = 1715
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL ALT + +E L A + + P + Y+P+SSTL R+ EE A
Sbjct: 1560 CMDILLALTAEVLGDS----DEMDTLKATMEEKFMANNPSKVSYEPISSTLRRKEEEVAA 1615
Query: 58 RLIQHAWRKH 67
R+IQ A+RK+
Sbjct: 1616 RVIQRAYRKY 1625
>sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha OS=Homo sapiens GN=SCN4A
PE=1 SV=4
Length = 1836
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 3 CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+DIL ALTK+ G + +++T + + P + Y+P+++TL R+ EE CA I
Sbjct: 1676 CLDILFALTKEVLGDSGEMDALKQTME-EKFMAANPSKVSYEPITTTLKRKHEEVCAIKI 1734
Query: 61 QHAWRKHKQCRA 72
Q A+R+H R+
Sbjct: 1735 QRAYRRHLLQRS 1746
>sp|Q2XVR6|SC4AB_TAKRU Sodium channel protein type 4 subunit alpha B OS=Takifugu rubripes
GN=scn4ab PE=3 SV=1
Length = 1719
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL ALT + +E L A + + P + Y+P+SSTL R+ EE A
Sbjct: 1564 CMDILLALTAEVLGDS----DEMDTLKATMEEKFMANNPSKVSYEPISSTLLRKEEEVAA 1619
Query: 58 RLIQHAWRKH 67
+IQ A+RK+
Sbjct: 1620 TVIQRAYRKY 1629
>sp|O08562|SCN9A_RAT Sodium channel protein type 9 subunit alpha OS=Rattus norvegicus
GN=Scn9a PE=1 SV=1
Length = 1984
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L +++ R P + Y+P+++TL R++EE A
Sbjct: 1836 CLDILFAFTKRVLGEGG----EMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEEVSA 1891
Query: 58 RLIQHAWRKHK 68
+IQ A+R+++
Sbjct: 1892 TIIQRAYRRYR 1902
>sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alpha OS=Homo sapiens GN=SCN1A
PE=1 SV=2
Length = 2009
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L ++ R P + Y P+++TL R++EE A
Sbjct: 1864 CLDILFAFTKRVLGESG----EMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSA 1919
Query: 58 RLIQHAWRKH 67
+IQ A+R+H
Sbjct: 1920 VIIQRAYRRH 1929
>sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha OS=Rattus norvegicus
GN=Scn1a PE=2 SV=1
Length = 2009
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L ++ R P + Y P+++TL R++EE A
Sbjct: 1864 CLDILFAFTKRVLGESG----EMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSA 1919
Query: 58 RLIQHAWRKH 67
+IQ A+R+H
Sbjct: 1920 VIIQRAYRRH 1929
>sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A
PE=1 SV=3
Length = 1988
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L +++ R P + Y+P+++TL R++E+ A
Sbjct: 1838 CLDILFAFTKRVLGESG----EMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSA 1893
Query: 58 RLIQHAWRKHKQCRAGGTEPGSPGSPDG-RDTAVLVESD 95
+IQ A+R+++ R S DG RD +L + D
Sbjct: 1894 TVIQRAYRRYR-LRQNVKNISSIYIKDGDRDDDLLNKKD 1931
>sp|Q62205|SCN9A_MOUSE Sodium channel protein type 9 subunit alpha OS=Mus musculus GN=Scn9a
PE=1 SV=2
Length = 1984
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L +++ R P + Y+P+++TL R++E+ A
Sbjct: 1836 CLDILFAFTKRVLGESG----EMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSA 1891
Query: 58 RLIQHAWRKHK 68
+IQ A+R+++
Sbjct: 1892 TIIQRAYRRYR 1902
>sp|Q28644|SCN9A_RABIT Sodium channel protein type 9 subunit alpha OS=Oryctolagus cuniculus
GN=SCN9A PE=2 SV=1
Length = 1984
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L +++ R P + Y+P+++TL R++E+ A
Sbjct: 1835 CLDILFAFTKRVLGESG----EMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSA 1890
Query: 58 RLIQHAWRKHK 68
+IQ A+R+++
Sbjct: 1891 TVIQRAYRRYR 1901
>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha OS=Homo sapiens GN=SCN2A
PE=1 SV=3
Length = 2005
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L ++ R P + Y+P+++TL R++EE A
Sbjct: 1854 CLDILFAFTKRVLGESG----EMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSA 1909
Query: 58 RLIQHAWRKH 67
+IQ A+R++
Sbjct: 1910 IIIQRAYRRY 1919
>sp|Q20JQ7|SC4AB_DANRE Sodium channel protein type 4 subunit alpha B OS=Danio rerio
GN=scn4ab PE=2 SV=1
Length = 1784
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 3 CVDILDALTKDFF--ARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+D+L ALT + + + + ++ T + N P +A Y+P++STL R++EE A I
Sbjct: 1618 CLDLLLALTGEVLGGSDQMDGMKATMEEKFMANN-PSKASYEPITSTLKRKQEEVAASTI 1676
Query: 61 QHAWRKH--KQC 70
Q A+R H K+C
Sbjct: 1677 QRAYRSHILKRC 1688
>sp|P15389|SCN5A_RAT Sodium channel protein type 5 subunit alpha OS=Rattus norvegicus
GN=Scn5a PE=2 SV=1
Length = 2019
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 3 CVDILDALTKDFFARKGN----PIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCAR 58
C+DIL A TK G I+ +A P + Y+P+++TL R+ EE A
Sbjct: 1852 CMDILFAFTKRVLGESGEMDALKIQMEEKFMA---ANPSKISYEPITTTLRRKHEEVSAT 1908
Query: 59 LIQHAWRKHKQCRA 72
+IQ A+R+H R+
Sbjct: 1909 VIQRAFRRHLLQRS 1922
>sp|Q14524|SCN5A_HUMAN Sodium channel protein type 5 subunit alpha OS=Homo sapiens GN=SCN5A
PE=1 SV=2
Length = 2016
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 3 CVDILDALTKDFFARKGN----PIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCAR 58
C+DIL A TK G I+ +A P + Y+P+++TL R+ EE A
Sbjct: 1850 CMDILFAFTKRVLGESGEMDALKIQMEEKFMA---ANPSKISYEPITTTLRRKHEEVSAM 1906
Query: 59 LIQHAWRKHKQCRA 72
+IQ A+R+H R+
Sbjct: 1907 VIQRAFRRHLLQRS 1920
>sp|Q9JJV9|SCN5A_MOUSE Sodium channel protein type 5 subunit alpha OS=Mus musculus GN=Scn5a
PE=1 SV=2
Length = 2019
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 3 CVDILDALTKDFFARKGN----PIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCAR 58
C+DIL A TK G I+ +A P + Y+P+++TL R+ EE A
Sbjct: 1852 CMDILFAFTKRVLGESGEMDALKIQMEEKFMA---ANPSKISYEPITTTLRRKHEEVSAT 1908
Query: 59 LIQHAWRKHKQCRA 72
+IQ A+R+H R+
Sbjct: 1909 VIQRAFRRHLLQRS 1922
>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus
GN=Scn2a PE=1 SV=1
Length = 2005
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L ++ R P + Y+P+++TL R++EE A
Sbjct: 1854 CLDILFAFTKRVLGESG----EMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSA 1909
Query: 58 RLIQHAWRKH 67
+IQ A+R++
Sbjct: 1910 IVIQRAYRRY 1919
>sp|Q9WTU3|SCN8A_MOUSE Sodium channel protein type 8 subunit alpha OS=Mus musculus GN=Scn8a
PE=1 SV=1
Length = 1978
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+DIL A TK G ++ + E V + P + Y+P+++TL R++EE A ++
Sbjct: 1842 CLDILFAFTKRVLGDSGE-LDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVL 1900
Query: 61 QHAWRKH 67
Q A+R H
Sbjct: 1901 QRAYRGH 1907
>sp|Q2XVR7|SC4AA_TAKRU Sodium channel protein type 4 subunit alpha A OS=Takifugu rubripes
GN=scn4aa PE=3 SV=1
Length = 1892
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVN-TRPDEAGYDPVSSTLWRQREEYCARLIQ 61
CVD+L A+T++ + + A+ N P A Y P+++T+ ++ E+ A +IQ
Sbjct: 1716 CVDVLLAVTQEVLGDTIEMVAMRESIEAKFNLNNPTSASYAPITTTVRQKEEDMAAVVIQ 1775
Query: 62 HAWRKHKQCRAGGTEPGSPGSPDGRDTA 89
A+R H R S GR A
Sbjct: 1776 RAYRNHLHKRGIHHAAYIQRSKTGRKAA 1803
>sp|Q9UQD0|SCN8A_HUMAN Sodium channel protein type 8 subunit alpha OS=Homo sapiens GN=SCN8A
PE=1 SV=1
Length = 1980
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+DIL A TK G ++ + E V + P + Y+P+++TL R++EE A ++
Sbjct: 1844 CLDILFAFTKRVLGDSGE-LDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVL 1902
Query: 61 QHAWRKH 67
Q A+R H
Sbjct: 1903 QRAYRGH 1909
>sp|Q05973|SCN1_LOLBL Sodium channel protein 1 brain OS=Loligo bleekeri PE=2 SV=1
Length = 1522
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 15/80 (18%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPV----------SSTLWRQR 52
C+DIL AL K FA GN +EET + V T+ EA +D + +STL +R
Sbjct: 1429 CLDILLALVK--FALGGN-LEET-EAFKRVRTQM-EARFDEIFPTREKSEIRTSTLQMRR 1483
Query: 53 EEYCARLIQHAWRKHKQCRA 72
EE AR +Q AW++ K R+
Sbjct: 1484 EEMAARTLQRAWKRRKIMRS 1503
>sp|O88420|SCN8A_RAT Sodium channel protein type 8 subunit alpha OS=Rattus norvegicus
GN=Scn8a PE=1 SV=1
Length = 1978
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+DIL A TK G ++ + E V + P + Y+P+++TL R++EE A ++
Sbjct: 1842 CLDILFAFTKRVLGDSGE-LDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVL 1900
Query: 61 QHAWRKH 67
Q A+R H
Sbjct: 1901 QRAYRGH 1907
>sp|Q2XVR5|SC4AA_TETNG Sodium channel protein type 4 subunit alpha A OS=Tetraodon
nigroviridis GN=scn4aa PE=3 SV=2
Length = 1863
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVN-TRPDEAGYDPVSSTLWRQREEYCARLIQ 61
CVD+L A+T++ + + A+ N P Y P+++T+ ++ EE A +IQ
Sbjct: 1696 CVDVLLAVTQEVLGDTIEMVAMRESIEAKFNLNNPTSVSYAPITTTVRQKEEEMAAVVIQ 1755
Query: 62 HAWRKHKQCR 71
A+R H R
Sbjct: 1756 RAYRNHLHKR 1765
>sp|Q9Y5Y9|SCNAA_HUMAN Sodium channel protein type 10 subunit alpha OS=Homo sapiens
GN=SCN10A PE=1 SV=2
Length = 1956
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVN-----TRPDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK+ G E L A + T ++ Y+P+++TL ++E+ A
Sbjct: 1800 CLDILFAFTKNVLGESG----ELDSLKANMEEKFMATNLSKSSYEPIATTLRWKQEDISA 1855
Query: 58 RLIQHAWRKHKQCRAGGTEPGSPGSPDGRDTAVLVESDGF 97
+IQ A+R + R+ +P P + A + +GF
Sbjct: 1856 TVIQKAYRSYVLHRSMALS-NTPCVPRAEEEAASLPDEGF 1894
>sp|O46669|SCNAA_CANFA Sodium channel protein type 10 subunit alpha OS=Canis familiaris
GN=SCN10A PE=2 SV=1
Length = 1962
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVN-----TRPDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK+ G E L A + T +A Y+P+++TL ++E+ A
Sbjct: 1807 CLDILFAFTKNVLGESG----ELDSLKANIEEKFMATNVSKASYEPIATTLRWKQEDISA 1862
Query: 58 RLIQHAWRKHKQCRAGGTEPGSPGSPDGRDTA 89
+IQ A+R + R+ T P P +
Sbjct: 1863 TVIQKAYRSYVLHRS-MTISNPPAVPRAEEAV 1893
>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha OS=Rattus norvegicus
GN=Scn3a PE=1 SV=1
Length = 1951
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L ++ R P + Y+P+++TL R++EE A
Sbjct: 1800 CLDILFAFTKRVLGESG----EMDALRIQMEDRFMASNPSKVSYEPITTTLKRKQEEVSA 1855
Query: 58 RLIQHAWR 65
+IQ +R
Sbjct: 1856 AIIQRNYR 1863
>sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha OS=Homo sapiens GN=SCN3A
PE=1 SV=2
Length = 2000
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK G E L ++ R P + Y+P+++TL R++EE A
Sbjct: 1849 CLDILFAFTKRVLGESG----EMDALRIQMEDRFMASNPSKVSYEPITTTLKRKQEEVSA 1904
Query: 58 RLIQHAWR 65
+IQ +R
Sbjct: 1905 AIIQRNFR 1912
>sp|Q62968|SCNAA_RAT Sodium channel protein type 10 subunit alpha OS=Rattus norvegicus
GN=Scn10a PE=1 SV=1
Length = 1956
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAE-VNTRPDEAGYDPVSSTLWRQREEYCARLIQ 61
C+DIL A TK+ G ++ + + T +A Y+P+++TL ++E+ A +IQ
Sbjct: 1801 CLDILFAFTKNVLGESGELDSLKTNMEEKFMATNLSKASYEPIATTLRWKQEDLSATVIQ 1860
Query: 62 HAWRKHKQCRA 72
A+R + R+
Sbjct: 1861 KAYRSYMLHRS 1871
>sp|Q6QIY3|SCNAA_MOUSE Sodium channel protein type 10 subunit alpha OS=Mus musculus
GN=Scn10a PE=1 SV=2
Length = 1958
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAE-VNTRPDEAGYDPVSSTLWRQREEYCARLIQ 61
C+DIL A TK+ G ++ + + T +A Y+P+++TL ++E+ A +IQ
Sbjct: 1801 CLDILFAFTKNVLGESGELDSLKTNMEEKFMATNLSKASYEPIATTLRCKQEDISATIIQ 1860
Query: 62 HAWRKHKQCRA 72
A+R + R+
Sbjct: 1861 KAYRNYMLQRS 1871
>sp|Q9R053|SCNBA_MOUSE Sodium channel protein type 11 subunit alpha OS=Mus musculus
GN=Scn11a PE=1 SV=2
Length = 1765
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+D+L A T ++ ++ E + P + Y+P+ +T R+ EE CA +I
Sbjct: 1662 CMDVLFAFTTRVLGNSSG-LDTMKAMMEEKFMEANPFKKLYEPIVTTTKRKEEEECAAVI 1720
Query: 61 QHAWRKHKQ 69
Q A+R+H +
Sbjct: 1721 QRAYRRHME 1729
>sp|Q2XVR3|SC4AA_DANRE Sodium channel protein type 4 subunit alpha A OS=Danio rerio
GN=scn4aa PE=2 SV=2
Length = 1829
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 5 DILDALTKDFFARKGNPIEETGDLVAE------VNTRPDEAGYDPVSSTLWRQREEYCAR 58
DIL A+T++ G+ IE D + E + P A ++P+ +TL R+ EE A
Sbjct: 1644 DILLAVTREVL---GDTIEM--DAMKESIEAKFIMNNPTSASFEPIITTLRRKEEERAAI 1698
Query: 59 LIQHAWRKHKQCRA 72
+Q +R+H RA
Sbjct: 1699 AVQRIYRRHLLKRA 1712
>sp|O88457|SCNBA_RAT Sodium channel protein type 11 subunit alpha OS=Rattus norvegicus
GN=Scn11a PE=1 SV=1
Length = 1765
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+D+L A T ++ ++ E + P + Y+P+ +T R+ EE A +I
Sbjct: 1662 CMDVLFAFTTRVLGDSSG-LDTMKTMMEEKFMEANPFKKLYEPIVTTTKRKEEEQGAAVI 1720
Query: 61 QHAWRKHKQ 69
Q A+RKH +
Sbjct: 1721 QRAYRKHME 1729
>sp|Q01118|SCN7A_HUMAN Sodium channel protein type 7 subunit alpha OS=Homo sapiens GN=SCN7A
PE=2 SV=2
Length = 1682
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 3 CVDILDALTK-----DFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCA 57
C+DIL A TK D K E+G L+A P + +P+++TL R++E A
Sbjct: 1574 CLDILLAFTKRVMGQDVRMEKVVSEIESGFLLAN----PFKITCEPITTTLKRKQEAVSA 1629
Query: 58 RLIQHAWRKHK 68
+IQ A++ ++
Sbjct: 1630 TIIQRAYKNYR 1640
>sp|P02719|SCNA_ELEEL Sodium channel protein OS=Electrophorus electricus PE=2 SV=1
Length = 1820
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 36 PDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQCRA 72
P ++PV +TL R+ EE+ + +IQ A+R++ RA
Sbjct: 1679 PSPTFFEPVVTTLRRKEEEWASVVIQRAFRQYLLMRA 1715
>sp|Q6CHE4|PSF1_YARLI DNA replication complex GINS protein PSF1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=PSF1 PE=3 SV=1
Length = 186
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 24 ETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQH-AWRKHKQC 70
E L A +N DE GYDP + R +C L+QH A R+ K+C
Sbjct: 36 EIRQLDASINKTQDEPGYDP------QDRVAHCNLLVQHLAMRRDKRC 77
>sp|Q9UI33|SCNBA_HUMAN Sodium channel protein type 11 subunit alpha OS=Homo sapiens
GN=SCN11A PE=1 SV=2
Length = 1791
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
C+DIL A T + ++ ++ E + P + Y+P+ +T R+ EE A +I
Sbjct: 1682 CMDILFAFTARVLG-GSDGLDSMKAMMEEKFMEANPLKKLYEPIVTTTKRKEEERGAAII 1740
Query: 61 QHAWRKHKQCRAGGTE 76
Q A+RK+ G +
Sbjct: 1741 QKAFRKYMMKVTKGDQ 1756
>sp|Q9ZSD6|ASPG_LUPLU Isoaspartyl peptidase/L-asparaginase OS=Lupinus luteus PE=1 SV=1
Length = 325
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 86 RDTAVLVESDGFSIKNGHRVVIHSRSPSQT------SRSAECLFSFKDFSM 130
RD A L+E G S+K VIH R+P T S + E F M
Sbjct: 256 RDVAALMEFKGLSLKEAADFVIHERTPKGTVGLIAVSAAGEIAMPFNTTGM 306
>sp|Q9W0Y8|SCN60_DROME Sodium channel protein 60E OS=Drosophila melanogaster GN=NaCP60E PE=2
SV=5
Length = 2821
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 3 CVDILDALTKDFFARKGNPIEETGD---LVAEVNTR-----PDEAGYDPVSSTLWRQREE 54
C+DIL AL K +EET + L +++ + P + VSST +R+E
Sbjct: 2364 CLDILHALVKHVLGH----VEETDNFKQLQEQMDVKFKKQFPTRKELEIVSSTRIWKRQE 2419
Query: 55 YCARLIQHAW-----RKHKQCRAG----GTEPGSPG 81
A+ IQ W RK ++ R+ T+ SPG
Sbjct: 2420 KAAKTIQTGWKEYLRRKREKERSNSGDSATQTSSPG 2455
>sp|P64757|ARFC_MYCTU Uncharacterized membrane protein ArfC OS=Mycobacterium tuberculosis
GN=arfC PE=2 SV=1
Length = 175
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 PDEAGYDPVSSTLWRQREEYCARLIQHAWRK 66
P++ YDP + +W Q EE AR WRK
Sbjct: 140 PEDPTYDPTVAQVWFQDEESAARAFFTPWRK 170
>sp|A1KH33|ARFC_MYCBP Uncharacterized membrane protein ArfC OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=arfC PE=2 SV=1
Length = 175
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 PDEAGYDPVSSTLWRQREEYCARLIQHAWRK 66
P++ YDP + +W Q EE AR WRK
Sbjct: 140 PEDPTYDPTVAQVWFQDEESAARAFFTPWRK 170
>sp|P64758|ARFC_MYCBO Uncharacterized membrane protein ArfC OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=arfC PE=3 SV=1
Length = 175
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 36 PDEAGYDPVSSTLWRQREEYCARLIQHAWRK 66
P++ YDP + +W Q EE AR WRK
Sbjct: 140 PEDPTYDPTVAQVWFQDEESAARAFFTPWRK 170
>sp|Q552C1|Y9957_DICDI Probable serine/threonine-protein kinase DDB_G0276181
OS=Dictyostelium discoideum GN=DDB_G0276181 PE=3 SV=1
Length = 1555
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 74 GTEPGSPGSPDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSRS 118
GT G+ G+ G D+ V+V D I N ++ +HS S T+ S
Sbjct: 1402 GTNSGTSGTNSGFDSPVIVTKDYHLISNLQKLDLHSNDGSDTNGS 1446
>sp|P30362|ASPG_LUPAR Isoaspartyl peptidase/L-asparaginase (Fragment) OS=Lupinus arboreus
PE=2 SV=1
Length = 306
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 86 RDTAVLVESDGFSIKNGHRVVIHSRSPSQT------SRSAECLFSFKDFSM 130
RD A L+E G S+K V+H R+P T S + E F M
Sbjct: 237 RDVAALMEFKGLSLKEAADYVVHERTPKGTVGLIAVSAAGEIAMPFNTTGM 287
>sp|P30364|ASPG_LUPAN Isoaspartyl peptidase/L-asparaginase OS=Lupinus angustifolius PE=2
SV=1
Length = 325
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 86 RDTAVLVESDGFSIKNGHRVVIHSRSPSQT------SRSAECLFSFKDFSM 130
RD A L+E G S+K V+H R+P T S + E F M
Sbjct: 256 RDVAALMEFKGLSLKEAADYVVHERTPKGTVGLIAVSAAGEIAMPFNTTGM 306
>sp|P50288|ASPG_LUPAL Isoaspartyl peptidase/L-asparaginase OS=Lupinus albus PE=3 SV=1
Length = 325
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 86 RDTAVLVESDGFSIKNGHRVVIHSRSPSQT------SRSAECLFSFKDFSM 130
RD A L+E G S+K V+H R+P T S + E F M
Sbjct: 256 RDVAALMEFKGLSLKEAADCVVHERTPKGTVGLIAVSAAGEIAMPFNTTGM 306
>sp|P13206|EDN1_CANFA Endothelin-1 OS=Canis familiaris GN=EDN1 PE=2 SV=2
Length = 202
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 14 FFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQR 52
F A +G P E L AE++T PD G P S WR R
Sbjct: 12 FVAFQGAP--EAAVLGAELSTGPDSRGEKPAPSAPWRPR 48
>sp|P59115|PHL1_LEPIN Sphingomyelinase C 1 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=sph1
PE=3 SV=1
Length = 597
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 2 FCVDILDALTKDFFARKGNPIEETGDLVAEVNTRP---DEAGYDPVSSTLWRQREEYCA 57
F +D ++ K PI LV++++ +P YDP+S+T W++ + Y +
Sbjct: 339 FTLDTKTNALAAYYYEKEKPIYLDYILVSKLHAQPPVWQNLAYDPISNTTWKRSDGYTS 397
>sp|Q72P44|PHL1_LEPIC Sphingomyelinase C 1 OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=sph1 PE=3 SV=1
Length = 596
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 2 FCVDILDALTKDFFARKGNPIEETGDLVAEVNTRP---DEAGYDPVSSTLWRQREEYCA 57
F +D ++ K PI LV++++ +P YDP+S+T W++ + Y +
Sbjct: 338 FTLDTKTNALAAYYYEKEKPIYLDYILVSKLHAQPPVWQNLAYDPISNTTWKRSDGYTS 396
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,010,374
Number of Sequences: 539616
Number of extensions: 2533314
Number of successful extensions: 6661
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6597
Number of HSP's gapped (non-prelim): 70
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)