Query psy14956
Match_columns 147
No_of_seqs 135 out of 200
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 16:47:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2301|consensus 99.1 1.2E-10 2.6E-15 116.8 4.4 73 1-74 1473-1547(1592)
2 PF00612 IQ: IQ calmodulin-bin 96.2 0.0061 1.3E-07 32.9 2.8 18 55-72 2-19 (21)
3 smart00015 IQ Short calmodulin 95.4 0.015 3.3E-07 32.6 2.3 21 53-73 2-22 (26)
4 PF15157 IQ-like: IQ-like 93.0 0.072 1.6E-06 39.6 2.1 18 56-73 49-66 (97)
5 KOG0162|consensus 87.4 0.6 1.3E-05 46.0 3.5 19 54-72 696-714 (1106)
6 KOG0377|consensus 84.3 1.1 2.4E-05 42.0 3.6 21 52-72 15-35 (631)
7 PF08763 Ca_chan_IQ: Voltage g 83.9 1.3 2.8E-05 27.6 2.6 19 54-72 9-27 (35)
8 PF10613 Lig_chan-Glu_bd: Liga 45.1 15 0.00033 25.1 1.6 13 2-14 21-33 (65)
9 KOG4427|consensus 42.8 25 0.00053 35.3 3.2 22 51-72 27-48 (1096)
10 PTZ00014 myosin-A; Provisional 41.2 30 0.00065 34.1 3.5 17 56-72 779-795 (821)
11 PTZ00014 myosin-A; Provisional 40.9 32 0.0007 33.8 3.7 20 53-72 799-818 (821)
12 PTZ00447 apical membrane antig 35.6 11 0.00024 34.7 -0.3 15 129-144 267-281 (508)
13 PRK15321 putative type III sec 33.4 1.1E+02 0.0024 23.5 4.8 57 4-67 16-76 (120)
14 KOG1419|consensus 31.2 29 0.00062 33.5 1.6 21 51-71 337-357 (654)
15 PF04959 ARS2: Arsenite-resist 23.3 12 0.00026 31.3 -2.1 14 130-143 73-86 (214)
16 PF08110 Antimicrobial15: Ocel 21.7 65 0.0014 17.5 1.3 14 4-17 2-15 (19)
17 PF11807 DUF3328: Domain of un 20.4 46 0.00099 25.2 0.7 7 2-8 165-171 (217)
No 1
>KOG2301|consensus
Probab=99.05 E-value=1.2e-10 Score=116.76 Aligned_cols=73 Identities=30% Similarity=0.449 Sum_probs=65.8
Q ss_pred CchHHHHHHHHhHHhcCCC--CccchhhhhhHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14956 1 MFCVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQCRAGG 74 (147)
Q Consensus 1 IHClDIL~ALtKrVLG~~~--~~l~~~~e~~~f~~~~P~k~~yepIsTTl~rkrEe~AA~vIQRA~R~~~l~r~~~ 74 (147)
|||.|||+||++++||.++ +.++..+++ +++.++|+++.|+||.+|+.+++++.+|.+||+|||.|++++...
T Consensus 1473 V~f~d~L~aL~~r~l~i~~~~~~~~~~q~e-~~~~~~~~~i~~~~i~~~l~~l~~~~~a~~i~~~y~~~~~~~~~~ 1547 (1592)
T KOG2301|consen 1473 VHCLDILFALTKRVLGIKKELDKVRELQEE-EFLASIPSKISYEPITTTLKRLQEPLSATIIQRAYRGYLLRDSDK 1547 (1592)
T ss_pred eehhhHHHHHHHHhhcccccccHHHHHHHH-HHHhhcchhhccchHHHHHHhhccchhhHHHHHHHHHHHHHHHHh
Confidence 7999999999999999877 445666677 899999999999999999999999999999999999999877643
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.21 E-value=0.0061 Score=32.87 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy14956 55 YCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 55 ~AA~vIQRA~R~~~l~r~ 72 (147)
.||.+||+.||.|+.++.
T Consensus 2 ~aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 589999999999998764
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.40 E-value=0.015 Score=32.64 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q psy14956 53 EEYCARLIQHAWRKHKQCRAG 73 (147)
Q Consensus 53 Ee~AA~vIQRA~R~~~l~r~~ 73 (147)
++.||.+||..||.|+.++..
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 567999999999999988753
No 4
>PF15157 IQ-like: IQ-like
Probab=93.00 E-value=0.072 Score=39.55 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy14956 56 CARLIQHAWRKHKQCRAG 73 (147)
Q Consensus 56 AA~vIQRA~R~~~l~r~~ 73 (147)
-++|||||||.|+.+...
T Consensus 49 kvkiiqrawre~lq~qd~ 66 (97)
T PF15157_consen 49 KVKIIQRAWREYLQRQDP 66 (97)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 367999999999987653
No 5
>KOG0162|consensus
Probab=87.35 E-value=0.6 Score=46.02 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy14956 54 EYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 54 e~AA~vIQRA~R~~~l~r~ 72 (147)
+--|++||||||+|+.||.
T Consensus 696 d~~A~~IQkAWRrfv~rrk 714 (1106)
T KOG0162|consen 696 DGMARRIQKAWRRFVARRK 714 (1106)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4468899999999998776
No 6
>KOG0377|consensus
Probab=84.35 E-value=1.1 Score=41.97 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy14956 52 REEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 52 rEe~AA~vIQRA~R~~~l~r~ 72 (147)
+...||.+||++||+|..|.+
T Consensus 15 raikaAilIQkWYRr~~ARle 35 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLE 35 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999986554
No 7
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=83.88 E-value=1.3 Score=27.57 Aligned_cols=19 Identities=32% Similarity=0.467 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy14956 54 EYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 54 e~AA~vIQRA~R~~~l~r~ 72 (147)
.+||-+||..||+|+.++.
T Consensus 9 ~YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998765
No 8
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=45.13 E-value=15 Score=25.15 Aligned_cols=13 Identities=31% Similarity=1.137 Sum_probs=11.0
Q ss_pred chHHHHHHHHhHH
Q psy14956 2 FCVDILDALTKDF 14 (147)
Q Consensus 2 HClDIL~ALtKrV 14 (147)
+|+|+|.+|.+.+
T Consensus 21 yciDll~~la~~l 33 (65)
T PF10613_consen 21 YCIDLLEELAEEL 33 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHc
Confidence 6999999997763
No 9
>KOG4427|consensus
Probab=42.81 E-value=25 Score=35.33 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy14956 51 QREEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 51 krEe~AA~vIQRA~R~~~l~r~ 72 (147)
+|.|.||..||+.||.|+-|+.
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk 48 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKK 48 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999998766
No 10
>PTZ00014 myosin-A; Provisional
Probab=41.16 E-value=30 Score=34.07 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy14956 56 CARLIQHAWRKHKQCRA 72 (147)
Q Consensus 56 AA~vIQRA~R~~~l~r~ 72 (147)
+|.+||++||.|+.|+.
T Consensus 779 ~~~~iq~~~r~~~~r~~ 795 (821)
T PTZ00014 779 LVSVLEALILKIKKKRK 795 (821)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666655543
No 11
>PTZ00014 myosin-A; Provisional
Probab=40.87 E-value=32 Score=33.83 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy14956 53 EEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 53 Ee~AA~vIQRA~R~~~l~r~ 72 (147)
...|+.+||+.||.|+.++.
T Consensus 799 ~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 799 NIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35689999999999998765
No 12
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=35.57 E-value=11 Score=34.69 Aligned_cols=15 Identities=53% Similarity=1.371 Sum_probs=12.2
Q ss_pred CcchHHHHhHhhcCCc
Q psy14956 129 SMGKWAYLCLLCGKNR 144 (147)
Q Consensus 129 ~~~~~~~~~~~~~~~~ 144 (147)
-||.| +||.||-|+.
T Consensus 267 imgew-flcflcfk~~ 281 (508)
T PTZ00447 267 IMGEW-FLCFLCFKDG 281 (508)
T ss_pred Hhhhh-hheeeeecCC
Confidence 48999 6899998764
No 13
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=33.39 E-value=1.1e+02 Score=23.51 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHhcCCC----CccchhhhhhHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q psy14956 4 VDILDALTKDFFARKG----NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKH 67 (147)
Q Consensus 4 lDIL~ALtKrVLG~~~----~~l~~~~e~~~f~~~~P~k~~yepIsTTl~rkrEe~AA~vIQRA~R~~ 67 (147)
+|+-+||..+++.-++ +++++.+- +.|.+|.+..+-+|---|+..+- .+||.+..+-
T Consensus 16 vdlydAF~Q~l~~LP~la~S~~~KD~I~--q~m~~F~dp~~G~pAF~s~~QQ~-----~mlq~~l~k~ 76 (120)
T PRK15321 16 VDLYDAFYQRLLALPESASSETLKDSIY--QEMNAFKDPNSGDSAFVSFEQQT-----AMLQNMLAKV 76 (120)
T ss_pred chHHHHHHHHHHhCCcccCcHHHHHHHH--HHHHHhCCCCCCCcccccHHHHH-----HHHHHHHHhc
Confidence 6999999999998665 35555544 35667777777788777776553 3678776553
No 14
>KOG1419|consensus
Probab=31.17 E-value=29 Score=33.50 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14956 51 QREEYCARLIQHAWRKHKQCR 71 (147)
Q Consensus 51 krEe~AA~vIQRA~R~~~l~r 71 (147)
+|..-||.+||=|||-|..-.
T Consensus 337 rrr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 337 RRRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred hhcchHHHHHHHHHHHHhccc
Confidence 456679999999999998654
No 15
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=23.29 E-value=12 Score=31.27 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=9.0
Q ss_pred cchHHHHhHhhcCC
Q psy14956 130 MGKWAYLCLLCGKN 143 (147)
Q Consensus 130 ~~~~~~~~~~~~~~ 143 (147)
.++|-|+|.+|||-
T Consensus 73 ~~~~K~~C~lc~Kl 86 (214)
T PF04959_consen 73 EDEDKWRCPLCGKL 86 (214)
T ss_dssp SSSEEEEE-SSS-E
T ss_pred HcCCEECCCCCCcc
Confidence 35667899999983
No 16
>PF08110 Antimicrobial15: Ocellatin family; InterPro: IPR012518 This family consists of the ocellatin family of antimicrobial peptides. Ocellatins are produced from the electrical-stimulated skin secretions of the South American frog, Leptodactylus ocellatus (Argus frog). The family consists of three structurally related peptides, ocellatin 1, ocellatin 2 and ocellatin 3. These peptides present haemolytic activity against human erythrocytes and are also active against Escherichia coli [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=21.72 E-value=65 Score=17.55 Aligned_cols=14 Identities=43% Similarity=0.710 Sum_probs=12.4
Q ss_pred HHHHHHHHhHHhcC
Q psy14956 4 VDILDALTKDFFAR 17 (147)
Q Consensus 4 lDIL~ALtKrVLG~ 17 (147)
+|||.--.|+++|.
T Consensus 2 lDIlK~AaK~l~~H 15 (19)
T PF08110_consen 2 LDILKGAAKDLLAH 15 (19)
T ss_pred hHHHHhHHHHHHHH
Confidence 79999999999885
No 17
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=20.37 E-value=46 Score=25.15 Aligned_cols=7 Identities=43% Similarity=0.994 Sum_probs=5.5
Q ss_pred chHHHHH
Q psy14956 2 FCVDILD 8 (147)
Q Consensus 2 HClDIL~ 8 (147)
||+|.|.
T Consensus 165 HC~d~LR 171 (217)
T PF11807_consen 165 HCLDYLR 171 (217)
T ss_pred HHHHHHH
Confidence 8888875
Done!