Query psy14956
Match_columns 147
No_of_seqs 135 out of 200
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 16:47:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dck_A Sodium channel protein 99.9 3E-25 1E-29 175.4 4.6 72 1-73 76-149 (168)
2 2kxw_B Sodium channel protein 99.0 5.2E-11 1.8E-15 69.1 1.3 24 49-72 1-24 (27)
3 2l53_B CAM, voltage-gated sodi 99.0 1.1E-10 3.9E-15 69.6 2.0 25 50-74 2-26 (31)
4 1n2d_C IQ2 and IQ3 motifs from 95.2 0.022 7.5E-07 34.7 3.8 22 51-72 25-46 (48)
5 2ix7_C Myosin-5A; contractIle 92.8 0.092 3.1E-06 33.1 3.2 18 54-71 5-22 (58)
6 2bl0_A Major plasmodial myosin 85.7 0.89 3E-05 29.2 3.7 22 51-72 27-48 (63)
7 3dvk_B Voltage-dependent R-typ 84.7 0.68 2.3E-05 25.6 2.3 17 54-70 6-22 (23)
8 2ix7_C Myosin-5A; contractIle 84.1 1.2 4E-05 27.9 3.7 19 54-72 28-46 (58)
9 1wdc_A Scallop myosin; calcium 84.0 1.2 4.1E-05 28.6 3.7 21 52-72 30-50 (64)
10 3dve_B Voltage-dependent N-typ 80.5 0.65 2.2E-05 25.7 1.2 18 54-71 5-22 (23)
11 1n2d_C IQ2 and IQ3 motifs from 80.2 1.2 4.1E-05 26.7 2.5 18 55-72 4-21 (48)
12 3bxl_B CAM, voltage-dependent 75.8 2 7E-05 24.3 2.4 19 54-72 2-20 (26)
13 2dfs_A Myosin-5A; myosin-V, in 73.5 2.5 8.5E-05 40.8 3.8 21 52-72 814-834 (1080)
14 1kk8_A Myosin heavy chain, str 71.8 3 0.0001 39.4 3.9 19 54-72 805-823 (837)
15 2f3y_B Voltage-dependent L-typ 62.0 4.5 0.00015 22.9 1.8 18 55-72 3-20 (26)
16 1w7j_A Myosin VA; motor protei 58.5 7.6 0.00026 36.4 3.8 26 47-72 758-786 (795)
17 2dfs_A Myosin-5A; myosin-V, in 56.6 8.4 0.00029 37.2 3.8 19 54-72 768-786 (1080)
18 2be6_D Voltage-dependent L-typ 56.1 8.6 0.00029 23.3 2.5 18 55-72 12-29 (37)
19 3g43_E Voltage-dependent L-typ 51.1 7.9 0.00027 27.1 2.0 19 53-71 62-80 (81)
20 1i84_S Smooth muscle myosin he 50.4 12 0.00042 35.9 3.9 20 53-72 817-836 (1184)
21 3l9k_W Dynein intermediate cha 40.5 14 0.00048 22.3 1.7 13 53-65 19-31 (38)
22 2cov_D Beta-1,3-xylanase; carb 37.6 3.4 0.00012 30.0 -1.6 13 126-139 30-42 (104)
23 2lvu_A Zinc finger and BTB dom 42.8 7.4 0.00025 18.5 0.0 10 134-143 2-11 (26)
24 1kk8_A Myosin heavy chain, str 36.3 26 0.0009 33.0 3.7 18 55-72 780-797 (837)
25 2lvr_A Zinc finger and BTB dom 38.4 9.6 0.00033 18.4 0.0 10 134-143 3-12 (30)
26 2lvt_A Zinc finger and BTB dom 37.1 10 0.00035 18.3 0.0 10 134-143 2-11 (29)
27 1p7a_A BF3, BKLF, kruppel-like 30.0 5.6 0.00019 20.7 -1.2 14 131-144 8-21 (37)
28 3iuf_A Zinc finger protein UBI 26.7 6.3 0.00021 22.5 -1.5 13 131-143 4-16 (48)
29 1vzm_A Osteocalcin; calcium-bi 26.0 49 0.0017 20.6 2.5 16 53-68 24-40 (45)
30 1q8h_A Osteocalcin; helix-turn 25.9 49 0.0017 21.0 2.5 16 53-68 30-46 (49)
31 1znf_A 31ST zinc finger from X 24.5 8 0.00027 18.3 -1.2 10 135-144 2-11 (27)
32 1ard_A Yeast transcription fac 24.4 9.9 0.00034 18.1 -0.8 10 135-144 3-12 (29)
33 2kvg_A Zinc finger and BTB dom 24.1 7.6 0.00026 18.9 -1.3 9 135-143 4-12 (27)
34 2elx_A Zinc finger protein 406 23.4 5.8 0.0002 20.1 -1.9 13 131-143 4-16 (35)
35 1g4y_B Calcium-activated potas 23.0 1E+02 0.0035 22.2 4.1 28 45-72 20-47 (101)
36 2kvh_A Zinc finger and BTB dom 22.7 8.3 0.00028 18.5 -1.3 9 135-143 4-12 (27)
37 3gn4_A Myosin-VI; unconvention 22.1 64 0.0022 24.6 3.0 20 53-72 44-63 (148)
38 2m0f_A Zinc finger and BTB dom 21.8 11 0.00038 17.9 -1.0 9 135-143 3-11 (29)
39 2m0d_A Zinc finger and BTB dom 21.6 11 0.00038 17.9 -1.0 10 134-143 3-12 (30)
40 2fzp_A NRDP1, ring finger prot 21.5 58 0.002 24.9 2.6 54 5-68 50-103 (144)
41 1paa_A Yeast transcription fac 21.4 13 0.00044 17.9 -0.8 10 135-144 3-12 (30)
42 2en7_A Zinc finger protein 268 21.1 10 0.00035 20.4 -1.3 14 131-144 9-22 (44)
43 2kfq_A FP1; protein, de novo p 20.9 11 0.00039 19.1 -1.1 9 135-143 3-11 (32)
44 1gd2_E Transcription factor PA 20.4 81 0.0028 21.0 2.9 19 48-69 10-28 (70)
45 2kvf_A Zinc finger and BTB dom 20.2 10 0.00034 18.2 -1.3 9 135-143 4-12 (28)
No 1
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=99.91 E-value=3e-25 Score=175.42 Aligned_cols=72 Identities=32% Similarity=0.541 Sum_probs=68.1
Q ss_pred CchHHHHHHHHhHHhcCCC--CccchhhhhhHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14956 1 MFCVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQCRAG 73 (147)
Q Consensus 1 IHClDIL~ALtKrVLG~~~--~~l~~~~e~~~f~~~~P~k~~yepIsTTl~rkrEe~AA~vIQRA~R~~~l~r~~ 73 (147)
|||+|||+||||+|||+++ +.++++|++ +|+++||++.+|+||+||++|++|++||++||||||+|++++..
T Consensus 76 Vhf~dvL~ALtk~vlg~~~~~~~~~~~~e~-~~~~~~P~~~~~~pi~tt~~~~~e~~aA~~IQra~R~~~~r~~~ 149 (168)
T 4dck_A 76 IHCMDILFAFTKRVLGESGEMDALKIQMEE-KFMAANPSKISYEPITTTLRRKHEEVSAMVIQRAFRRHLLQRSL 149 (168)
T ss_dssp EEHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHCCCGGGCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHhCCcccHHHHHHHHHH-HHHHhCCCcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7999999999999999876 688999999 99999999999999999999999999999999999999988763
No 2
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=99.03 E-value=5.2e-11 Score=69.09 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy14956 49 WRQREEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 49 ~rkrEe~AA~vIQRA~R~~~l~r~ 72 (147)
+|++||+||+|||||||+|++++.
T Consensus 1 ~rk~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 1 KRKQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhh
Confidence 368999999999999999999765
No 3
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=1.1e-10 Score=69.64 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14956 50 RQREEYCARLIQHAWRKHKQCRAGG 74 (147)
Q Consensus 50 rkrEe~AA~vIQRA~R~~~l~r~~~ 74 (147)
|+|||+||+|||||||+|++++...
T Consensus 2 rk~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 2 PGSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6799999999999999999987643
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.022 Score=34.74 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy14956 51 QREEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 51 krEe~AA~vIQRA~R~~~l~r~ 72 (147)
.+++.||.+||..||.|+.++.
T Consensus 25 ~~~~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 25 EMKVNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHh
Confidence 3466799999999999998763
No 5
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=92.77 E-value=0.092 Score=33.15 Aligned_cols=18 Identities=17% Similarity=0.008 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy14956 54 EYCARLIQHAWRKHKQCR 71 (147)
Q Consensus 54 e~AA~vIQRA~R~~~l~r 71 (147)
+.||.+||..||.|+.++
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk 22 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRK 22 (58)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666666555443
No 6
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=85.69 E-value=0.89 Score=29.17 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy14956 51 QREEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 51 krEe~AA~vIQRA~R~~~l~r~ 72 (147)
..+..|+.+||+.+|.|+..+.
T Consensus 27 ~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 27 REKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3345688899999999987654
No 7
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=84.68 E-value=0.68 Score=25.60 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy14956 54 EYCARLIQHAWRKHKQC 70 (147)
Q Consensus 54 e~AA~vIQRA~R~~~l~ 70 (147)
.+||-+||.-||+++.+
T Consensus 6 iYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 6 IYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 58999999999999865
No 8
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=84.15 E-value=1.2 Score=27.86 Aligned_cols=19 Identities=16% Similarity=-0.053 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy14956 54 EYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 54 e~AA~vIQRA~R~~~l~r~ 72 (147)
-.||.+||..||.|+.++.
T Consensus 28 r~aai~IQ~~~Rg~~aR~~ 46 (58)
T 2ix7_C 28 QRAAITVQRYVRGYQARCY 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3589999999999987654
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=83.95 E-value=1.2 Score=28.56 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy14956 52 REEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 52 rEe~AA~vIQRA~R~~~l~r~ 72 (147)
.+..|+.+||+.+|.|+..+.
T Consensus 30 ~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 30 DQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 345588899999999987654
No 10
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=80.51 E-value=0.65 Score=25.70 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy14956 54 EYCARLIQHAWRKHKQCR 71 (147)
Q Consensus 54 e~AA~vIQRA~R~~~l~r 71 (147)
.+||-+||.-||+++.++
T Consensus 5 iYAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 5 VYAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 589999999999997654
No 11
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=80.17 E-value=1.2 Score=26.73 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy14956 55 YCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 55 ~AA~vIQRA~R~~~l~r~ 72 (147)
.||..||..||.|+.++.
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~ 21 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQR 21 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 488999999999987664
No 12
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=75.79 E-value=2 Score=24.30 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy14956 54 EYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 54 e~AA~vIQRA~R~~~l~r~ 72 (147)
.+||..||-.||+++.++.
T Consensus 2 vYAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 2 IYAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hhHHHHHHHHHHHHHhhhh
Confidence 4799999999999998775
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.55 E-value=2.5 Score=40.81 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy14956 52 REEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 52 rEe~AA~vIQRA~R~~~l~r~ 72 (147)
++..||.+||++||.|+.|+.
T Consensus 814 r~~~AAi~IQs~~Rg~~~Rk~ 834 (1080)
T 2dfs_A 814 RRTRAAIIIQKFQRMYVVRKR 834 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhhHHHHHH
Confidence 457788889999998876653
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=71.82 E-value=3 Score=39.36 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy14956 54 EYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 54 e~AA~vIQRA~R~~~l~r~ 72 (147)
..||.+||+.||.|+.++.
T Consensus 805 r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 805 RIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 4678889999999987664
No 15
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=61.99 E-value=4.5 Score=22.86 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy14956 55 YCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 55 ~AA~vIQRA~R~~~l~r~ 72 (147)
+|.-+||-.||+++.++.
T Consensus 3 Yat~LIqdyfRkfkkrke 20 (26)
T 2f3y_B 3 YATFLIQEYFRKFKKRKE 20 (26)
T ss_pred chhhhHHHHHHHHHHhHH
Confidence 567789999999998765
No 16
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=58.52 E-value=7.6 Score=36.43 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=19.3
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHhhc
Q psy14956 47 TLWRQRE---EYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 47 Tl~rkrE---e~AA~vIQRA~R~~~l~r~ 72 (147)
.|+..|+ ..+|.+||++||.|+.|+.
T Consensus 758 ~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~ 786 (795)
T 1w7j_A 758 YLEKIRADKLRAACIRIQKTIRGWLMRKK 786 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 3579999999999998775
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=56.59 E-value=8.4 Score=37.19 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy14956 54 EYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 54 e~AA~vIQRA~R~~~l~r~ 72 (147)
..||.+||++||.|+.|+.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~ 786 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKK 786 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5688888888888887654
No 18
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=56.10 E-value=8.6 Score=23.34 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy14956 55 YCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 55 ~AA~vIQRA~R~~~l~r~ 72 (147)
+|.-+||--||+++.++.
T Consensus 12 YatfLIQdyFRkfkkrke 29 (37)
T 2be6_D 12 YATFLIQEYFRKFKKRKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688899999999998776
No 19
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=51.14 E-value=7.9 Score=27.10 Aligned_cols=19 Identities=37% Similarity=0.460 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy14956 53 EEYCARLIQHAWRKHKQCR 71 (147)
Q Consensus 53 Ee~AA~vIQRA~R~~~l~r 71 (147)
-.|||-.||..||+|+.|+
T Consensus 62 KiYA~llI~d~~r~~k~r~ 80 (81)
T 3g43_E 62 KFYATFLIQEYFRKFKKRE 80 (81)
T ss_dssp CHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3589999999999998654
No 20
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=50.38 E-value=12 Score=35.93 Aligned_cols=20 Identities=15% Similarity=-0.076 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy14956 53 EEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 53 Ee~AA~vIQRA~R~~~l~r~ 72 (147)
+..|+.+||+.||.|+.++.
T Consensus 817 ~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 817 QLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34688889999999987654
No 21
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=40.46 E-value=14 Score=22.33 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q psy14956 53 EEYCARLIQHAWR 65 (147)
Q Consensus 53 Ee~AA~vIQRA~R 65 (147)
=+.+.+|||||.-
T Consensus 19 ~~rsskviERAL~ 31 (38)
T 3l9k_W 19 VVRAGRVIERALS 31 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4689999999973
No 22
>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM, beta-1,3-xylanas binding protein; 1.25A {Alcaligenes SP}
Probab=37.56 E-value=3.4 Score=30.02 Aligned_cols=13 Identities=54% Similarity=1.306 Sum_probs=10.0
Q ss_pred ccCCcchHHHHhHh
Q psy14956 126 KDFSMGKWAYLCLL 139 (147)
Q Consensus 126 ~~~~~~~~~~~~~~ 139 (147)
+++|.| |+|+||.
T Consensus 30 ~gWsAg-wnY~CLd 42 (104)
T 2cov_D 30 KGWSAG-WNYVCLN 42 (104)
T ss_dssp CCCCCS-SEEEEET
T ss_pred CCccce-eeEEEec
Confidence 467766 9999983
No 23
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.76 E-value=7.4 Score=18.52 Aligned_cols=10 Identities=50% Similarity=1.265 Sum_probs=8.2
Q ss_pred HHHhHhhcCC
Q psy14956 134 AYLCLLCGKN 143 (147)
Q Consensus 134 ~~~~~~~~~~ 143 (147)
.|.|..||+.
T Consensus 2 p~~C~~C~k~ 11 (26)
T 2lvu_A 2 PYVCERCGKR 11 (26)
Confidence 3789999985
No 24
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=36.33 E-value=26 Score=33.00 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy14956 55 YCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 55 ~AA~vIQRA~R~~~l~r~ 72 (147)
.+|++||++||.|+.|+.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~ 797 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKA 797 (837)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 468889999999998765
No 25
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=38.38 E-value=9.6 Score=18.35 Aligned_cols=10 Identities=30% Similarity=1.205 Sum_probs=8.3
Q ss_pred HHHhHhhcCC
Q psy14956 134 AYLCLLCGKN 143 (147)
Q Consensus 134 ~~~~~~~~~~ 143 (147)
.|.|..||+.
T Consensus 3 ~~~C~~C~k~ 12 (30)
T 2lvr_A 3 PYVCIHCQRQ 12 (30)
Confidence 4889999985
No 26
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.10 E-value=10 Score=18.30 Aligned_cols=10 Identities=40% Similarity=1.175 Sum_probs=8.3
Q ss_pred HHHhHhhcCC
Q psy14956 134 AYLCLLCGKN 143 (147)
Q Consensus 134 ~~~~~~~~~~ 143 (147)
.|.|..||+.
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 2lvt_A 2 PCQCVMCGKA 11 (29)
Confidence 4889999985
No 27
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=30.05 E-value=5.6 Score=20.67 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=10.6
Q ss_pred chHHHHhHhhcCCc
Q psy14956 131 GKWAYLCLLCGKNR 144 (147)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (147)
|...|.|..||+.-
T Consensus 8 ~~k~~~C~~C~k~f 21 (37)
T 1p7a_A 8 GIKPFQCPDCDRSF 21 (37)
T ss_dssp CSSSBCCTTTCCCB
T ss_pred CCCCccCCCCCccc
Confidence 45568899999853
No 28
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=26.73 E-value=6.3 Score=22.50 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=10.0
Q ss_pred chHHHHhHhhcCC
Q psy14956 131 GKWAYLCLLCGKN 143 (147)
Q Consensus 131 ~~~~~~~~~~~~~ 143 (147)
|...|.|..|||.
T Consensus 4 ~~kp~~C~~C~k~ 16 (48)
T 3iuf_A 4 RDKPYACDICGKR 16 (48)
T ss_dssp TTSCEECTTTCCE
T ss_pred CCcCEECCCcCcc
Confidence 4456889999985
No 29
>1vzm_A Osteocalcin; calcium-binding protein, bone GLA protein, BGP, hydroxyapatite, gamma carboxyl glutamic acid, vitamin K, bone, mineralization; HET: CGU; 1.4A {Argyrosomus regius}
Probab=26.04 E-value=49 Score=20.64 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHHHHH-HHHHHHHHH
Q psy14956 53 EEYCARL-IQHAWRKHK 68 (147)
Q Consensus 53 Ee~AA~v-IQRA~R~~~ 68 (147)
|++|-.+ ||.||++|-
T Consensus 24 ~~~A~~~G~~~AY~ryf 40 (45)
T 1vzm_A 24 DEMADAQGIVAAYQAFY 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 3566666 999999985
No 30
>1q8h_A Osteocalcin; helix-turn-helix-turn-helix, paper-CLIP, hydroxyapatite CRYS surface binding protein, calcium binding protein; HET: CGU; 2.00A {Sus scrofa} SCOP: g.32.1.1 PDB: 1q3m_A*
Probab=25.86 E-value=49 Score=21.00 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=12.6
Q ss_pred HHHHHHH-HHHHHHHHH
Q psy14956 53 EEYCARL-IQHAWRKHK 68 (147)
Q Consensus 53 Ee~AA~v-IQRA~R~~~ 68 (147)
+++|-.+ ||.||++|-
T Consensus 30 ~~~A~~~G~~~AY~ryf 46 (49)
T 1q8h_A 30 DELADHIGFQEAYRRFY 46 (49)
T ss_dssp HHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 4567666 999999985
No 31
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.51 E-value=8 Score=18.33 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=7.8
Q ss_pred HHhHhhcCCc
Q psy14956 135 YLCLLCGKNR 144 (147)
Q Consensus 135 ~~~~~~~~~~ 144 (147)
|.|..||+.-
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 6799999863
No 32
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.42 E-value=9.9 Score=18.14 Aligned_cols=10 Identities=20% Similarity=0.899 Sum_probs=7.9
Q ss_pred HHhHhhcCCc
Q psy14956 135 YLCLLCGKNR 144 (147)
Q Consensus 135 ~~~~~~~~~~ 144 (147)
|.|..||+.-
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 6799999853
No 33
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.06 E-value=7.6 Score=18.88 Aligned_cols=9 Identities=44% Similarity=1.084 Sum_probs=7.4
Q ss_pred HHhHhhcCC
Q psy14956 135 YLCLLCGKN 143 (147)
Q Consensus 135 ~~~~~~~~~ 143 (147)
|.|..||+.
T Consensus 4 ~~C~~C~k~ 12 (27)
T 2kvg_A 4 YRCPLCRAG 12 (27)
T ss_dssp EEETTTTEE
T ss_pred cCCCCCCcc
Confidence 679999974
No 34
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.44 E-value=5.8 Score=20.15 Aligned_cols=13 Identities=46% Similarity=0.996 Sum_probs=9.5
Q ss_pred chHHHHhHhhcCC
Q psy14956 131 GKWAYLCLLCGKN 143 (147)
Q Consensus 131 ~~~~~~~~~~~~~ 143 (147)
|...|.|..||+.
T Consensus 4 ~~k~~~C~~C~k~ 16 (35)
T 2elx_A 4 GSSGYVCALCLKK 16 (35)
T ss_dssp CCCSEECSSSCCE
T ss_pred CCCCeECCCCcch
Confidence 3345889999985
No 35
>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D
Probab=22.99 E-value=1e+02 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14956 45 SSTLWRQREEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 45 sTTl~rkrEe~AA~vIQRA~R~~~l~r~ 72 (147)
.|-+-.+--+.||.|+|.+|.-|+-.+-
T Consensus 20 D~qltk~~K~aAAnVLrEtWliyK~tkl 47 (101)
T 1g4y_B 20 DTQLTKRVKNAAANVLRETWLIYKNTKL 47 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566678999999999999987653
No 36
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.66 E-value=8.3 Score=18.51 Aligned_cols=9 Identities=33% Similarity=1.040 Sum_probs=7.5
Q ss_pred HHhHhhcCC
Q psy14956 135 YLCLLCGKN 143 (147)
Q Consensus 135 ~~~~~~~~~ 143 (147)
|.|..||+.
T Consensus 4 ~~C~~C~k~ 12 (27)
T 2kvh_A 4 FSCSLCPQR 12 (27)
T ss_dssp EECSSSSCE
T ss_pred ccCCCcChh
Confidence 679999985
No 37
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=22.06 E-value=64 Score=24.59 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy14956 53 EEYCARLIQHAWRKHKQCRA 72 (147)
Q Consensus 53 Ee~AA~vIQRA~R~~~l~r~ 72 (147)
...|+..||.+.|-|+.++.
T Consensus 44 R~~~~i~iQktvR~~L~rkk 63 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRR 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44588899999999998766
No 38
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.76 E-value=11 Score=17.86 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=7.3
Q ss_pred HHhHhhcCC
Q psy14956 135 YLCLLCGKN 143 (147)
Q Consensus 135 ~~~~~~~~~ 143 (147)
|.|..||+.
T Consensus 3 ~~C~~C~k~ 11 (29)
T 2m0f_A 3 LKCRECGKQ 11 (29)
T ss_dssp EECTTTSCE
T ss_pred ccCCCCCCc
Confidence 679999985
No 39
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.61 E-value=11 Score=17.92 Aligned_cols=10 Identities=40% Similarity=1.188 Sum_probs=7.8
Q ss_pred HHHhHhhcCC
Q psy14956 134 AYLCLLCGKN 143 (147)
Q Consensus 134 ~~~~~~~~~~ 143 (147)
.|.|..||+.
T Consensus 3 ~~~C~~C~~~ 12 (30)
T 2m0d_A 3 PYQCDYCGRS 12 (30)
T ss_dssp CEECTTTCCE
T ss_pred CccCCCCCcc
Confidence 3679999975
No 40
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein ubiquitination, structural genomics, STRU genomics consortium, SGC, ligase; 1.87A {Homo sapiens} SCOP: d.345.1.1 PDB: 2gwf_B 2ogb_A
Probab=21.46 E-value=58 Score=24.87 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=33.6
Q ss_pred HHHHHHHhHHhcCCCCccchhhhhhHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy14956 5 DILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHK 68 (147)
Q Consensus 5 DIL~ALtKrVLG~~~~~l~~~~e~~~f~~~~P~k~~yepIsTTl~rkrEe~AA~vIQRA~R~~~ 68 (147)
.+|++.+|+.|.+++-++...-. +..|--...+.+=-+||+.+|++ ||-|-+|.
T Consensus 50 ~~lq~mir~~L~~sGCP~hiln~----l~e~cHE~rWP~GLstLetRq~N------r~~~~~yV 103 (144)
T 2fzp_A 50 AVLQAVIKRSLVESGCPASIVNE----LIENAHERSWPQGLATLETRQMN------RRYYENYV 103 (144)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHH----HHHTTSGGGSCTTTSSHHHHHHT------TTGGGGCC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHH----HHHHhhhccCcchhhHHHHHHHH------HHHHHHHH
Confidence 47999999999999953222111 11223334455667889988887 34455554
No 41
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.41 E-value=13 Score=17.93 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=7.9
Q ss_pred HHhHhhcCCc
Q psy14956 135 YLCLLCGKNR 144 (147)
Q Consensus 135 ~~~~~~~~~~ 144 (147)
|.|..||+.-
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 6799999853
No 42
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.10 E-value=10 Score=20.39 Aligned_cols=14 Identities=43% Similarity=0.835 Sum_probs=10.5
Q ss_pred chHHHHhHhhcCCc
Q psy14956 131 GKWAYLCLLCGKNR 144 (147)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (147)
|...|.|..||+.-
T Consensus 9 ~~k~~~C~~C~k~f 22 (44)
T 2en7_A 9 GMKPYVCNECGKAF 22 (44)
T ss_dssp SSSSSCCTTTCCCC
T ss_pred CCcCeECCCCCCcc
Confidence 44568899999853
No 43
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.88 E-value=11 Score=19.13 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=7.5
Q ss_pred HHhHhhcCC
Q psy14956 135 YLCLLCGKN 143 (147)
Q Consensus 135 ~~~~~~~~~ 143 (147)
|.|..|||.
T Consensus 3 ~~C~~C~k~ 11 (32)
T 2kfq_A 3 FACPACPKR 11 (32)
T ss_dssp SSSSSSCTT
T ss_pred CCCCCCCcc
Confidence 679999984
No 44
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.44 E-value=81 Score=20.98 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14956 48 LWRQREEYCARLIQHAWRKHKQ 69 (147)
Q Consensus 48 l~rkrEe~AA~vIQRA~R~~~l 69 (147)
.+|+..+.+| |||||.-+.
T Consensus 10 ~kR~~qNR~A---QRafReRK~ 28 (70)
T 1gd2_E 10 SKRKAQNRAA---QRAFRKRKE 28 (70)
T ss_dssp HHHHHHHHHH---HHHHHHHHH
T ss_pred hHHHHHHHHH---HHHHHHHHH
Confidence 4666677766 999997654
No 45
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.15 E-value=10 Score=18.19 Aligned_cols=9 Identities=56% Similarity=1.423 Sum_probs=7.3
Q ss_pred HHhHhhcCC
Q psy14956 135 YLCLLCGKN 143 (147)
Q Consensus 135 ~~~~~~~~~ 143 (147)
|.|..||+.
T Consensus 4 ~~C~~C~k~ 12 (28)
T 2kvf_A 4 YSCSVCGKR 12 (28)
T ss_dssp EECSSSCCE
T ss_pred ccCCCCCcc
Confidence 679999975
Done!