RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14956
         (147 letters)



>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia
           coli [TaxId: 562]}
          Length = 147

 Score = 28.0 bits (62), Expect = 0.27
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 98  SIKNGHRVVIHSRSPSQTSRSAECLFSFKDFS 129
             ++G RV+I      Q  R  E L++    S
Sbjct: 32  RWRSGKRVLIACEDEKQAYRLDEALWARPAES 63


>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human
           papillomavirus type 18 [TaxId: 333761]}
          Length = 145

 Score = 26.2 bits (58), Expect = 1.3
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)

Query: 121 CLFSFKDFSMGKWAYLCLL-----CGKNRET 146
            L++       KW  L L      CGK+R T
Sbjct: 57  ILYAHIQCLDCKWGVLILALLRYKCGKSRLT 87


>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO)
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 212

 Score = 25.8 bits (55), Expect = 1.9
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 100 KNGHRVVIHSRSPSQTSRSAECL 122
             GH +V+ SR   +    A   
Sbjct: 22  TLGHEIVVGSRREEKAEAKAAEY 44


>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
           domains {Thermus thermophilus [TaxId: 274]}
          Length = 227

 Score = 25.8 bits (55), Expect = 2.1
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 48  LWRQREEYCARLIQHAWRKHKQCRAGGTEPGSPGSPDGRDTAVLVESDGFSIKNGHRVVI 107
           L    EE   R ++    K        +EPG+        T  + + D + + NG ++ I
Sbjct: 98  LLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVL-NGTKMWI 156

Query: 108 H 108
            
Sbjct: 157 S 157


>d1f08a_ d.89.1.2 (A:) Replication initiation protein E1 {Bovine
           papillomavirus [TaxId: 10571]}
          Length = 148

 Score = 25.0 bits (55), Expect = 2.6
 Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 5/31 (16%)

Query: 121 CLFSFKDFSMGKWAYLCLL-----CGKNRET 146
           C F        +     +        K+RET
Sbjct: 60  CSFLQMQKRSHEGGTCAVYLICFNTAKSRET 90


>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes
           [TaxId: 844]}
          Length = 328

 Score = 25.1 bits (54), Expect = 3.7
 Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 27  DLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQ-CRAGGTEPGSPGSPDG 85
            L   VN    +   + V  T      E  A  +    +  K     G   PGS  S DG
Sbjct: 68  KLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKSQKPVVLVGAMRPGSSMSADG 127

Query: 86  RD---TAVLVESDGFSIKNGHRVVIHSR 110
                 AV V  +  S   G  +V++  
Sbjct: 128 PMNLYNAVNVAINKASTNKGVVIVMNDE 155


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 25.1 bits (54), Expect = 4.2
 Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 8/31 (25%)

Query: 49  WRQREEY--------CARLIQHAWRKHKQCR 71
           +  R EY            IQ+  R     +
Sbjct: 748 FLMRVEYRAMVERRESIFCIQYNVRSFMNVK 778


>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
           (Ovis orientalis aries) [TaxId: 9940]}
          Length = 176

 Score = 24.6 bits (52), Expect = 4.9
 Identities = 4/42 (9%), Positives = 9/42 (21%)

Query: 99  IKNGHRVVIHSRSPSQTSRSAECLFSFKDFSMGKWAYLCLLC 140
             +G  V   +R+ S+                       +  
Sbjct: 22  NDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSK 63


>d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces
           cerevisiae virus L-A [TaxId: 11008]}
          Length = 651

 Score = 24.9 bits (54), Expect = 5.3
 Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 2/40 (5%)

Query: 10  LTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLW 49
           L   F  R    +++  + +    T        P S  + 
Sbjct: 236 LADKFAYRHALTVQDADEWIEGDRTDDQ--FRPPSSKVML 273


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 24.7 bits (53), Expect = 6.5
 Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 8/31 (25%)

Query: 49  WRQREEY--------CARLIQHAWRKHKQCR 71
           +  R+ Y           +IQ   RK    R
Sbjct: 744 YLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 774


>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Human(Homo sapiens), liver
           isoform [TaxId: 9606]}
          Length = 164

 Score = 24.1 bits (52), Expect = 7.6
 Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 95  DGFSIKNGHRVVIHSRSPSQTSRSAECLFSFKDFSMG 131
           D F I  G    +H+ + +Q +         K +  G
Sbjct: 15  DNFGIVEGLMTTVHAITATQKTVDGPS---GKLWRDG 48


>d1g4yb_ f.15.1.1 (B:) Small-conductance potassium channel {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 82

 Score = 23.3 bits (50), Expect = 8.2
 Identities = 4/28 (14%), Positives = 13/28 (46%)

Query: 46 STLWRQREEYCARLIQHAWRKHKQCRAG 73
          + L ++ +   A +++  W  +K  +  
Sbjct: 2  TQLTKRVKNAAANVLRETWLIYKNTKLV 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.425 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 578,223
Number of extensions: 25130
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 18
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.4 bits)