BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14958
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PID|A Chain A, Crystal Structure Of Human Mitochondrial Tyrosyl-trna
Synthetase In Complex With An Adenylate Analog
pdb|2PID|B Chain B, Crystal Structure Of Human Mitochondrial Tyrosyl-trna
Synthetase In Complex With An Adenylate Analog
pdb|3ZXI|A Chain A, Crystal Structure Of Human Mitochondrial Tyrosyl-Trna
Synthetase In Complex With A Tyrosyl-Adenylate Analog
pdb|3ZXI|B Chain B, Crystal Structure Of Human Mitochondrial Tyrosyl-Trna
Synthetase In Complex With A Tyrosyl-Adenylate Analog
Length = 356
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 77/169 (45%), Gaps = 42/169 (24%)
Query: 235 PQTVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW----RTCNEEA- 289
PQT+Y GFDPTA S QRAGH VIAL+ + L RT EA
Sbjct: 46 PQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREAL 105
Query: 290 -------------------------------------VVNNMSWYNSINVIDFMNHIARL 312
V++N +WY +++DF+ +
Sbjct: 106 ETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGH 165
Query: 313 FRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
FRMG +L +QSV RL+S GM+ EF YQ+ Q+YD+ +L++ + CR Q
Sbjct: 166 FRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQ 214
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 40/162 (24%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGATA++GDPSG+TK+R+ + V+ N + + ++ + NH+Q F R S
Sbjct: 85 VGGATARLGDPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGR--SWGSFT 142
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V++N +WY +++DF+ + FRMG +L +QSV
Sbjct: 143 VLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDF 202
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GGSDQ+GNI +G++ I+KL G+ VF + V
Sbjct: 203 YYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITV 244
>pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|B Chain B, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|C Chain C, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|D Chain D, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
Length = 432
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 35/163 (21%)
Query: 233 RTPQTVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW-------RTC 285
R P TVYAGFDPTA S +QRAGH+ I L + ++ R+
Sbjct: 30 RGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSL 89
Query: 286 NEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFRMGDM 318
NE V NN+ W S++ I+F+ I + F + M
Sbjct: 90 NEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVM 149
Query: 319 LKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
L + ++ RL E G++YTEFSY + Q+ D+ L++ H C Q
Sbjct: 150 LARDTIRRRLAGE-GISYTEFSYLLLQANDYVELHRRHGCTLQ 191
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 63/160 (39%), Gaps = 47/160 (29%)
Query: 110 GGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIV 169
GGAT +GDP +D ++ L T + E+ R + F D DS IV
Sbjct: 72 GGATGMIGDP----RDVGERSLNEADTVAEWTER-----IRGQLERF-VDFDDSPMGAIV 121
Query: 170 VNNMSWYNSINVIDFMNHIARLFRMGDMLKKQS--------------------------- 202
NN+ W S++ I+F+ I + F + ML + +
Sbjct: 122 ENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEGISYTEFSYLLLQANDYVE 181
Query: 203 ----------VGGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
+GG+DQ GNI AG L+ + G TV L V
Sbjct: 182 LHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTV 221
>pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3
ANGSTROMS Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
pdb|3TS1|A Chain A, Structure Of Tyrosyl-t/rna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 419
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 37/160 (23%)
Query: 237 TVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW--------RTCNEE 288
T+Y GFDPTA S +Q+AGH+ IAL+ + ++ RT N +
Sbjct: 32 TLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAK 91
Query: 289 AVV---------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
V NN W ++VI F+ + + F + M+ K
Sbjct: 92 ETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAK 151
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+SV +R+E+ G+++TEFSY + Q+YD+ LY+ CR Q
Sbjct: 152 ESVQSRIET--GISFTEFSYMMLQAYDFLRLYETEGCRLQ 189
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 45/154 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R TV+ + I++ + D + P
Sbjct: 69 VGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFL---------DFEADGNPAK 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W ++VI F+ + + F + M+ K+SV
Sbjct: 120 IKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLR 179
Query: 204 -----------GGSDQMGNIKAGHDLISKLYGKT 226
GGSDQ GNI AG +LI K G+
Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGEA 213
>pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 37/160 (23%)
Query: 237 TVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW--------RTCNEE 288
T+Y GFDPTA S +Q+AGH+ IAL+ + ++ RT N +
Sbjct: 32 TLYCGFDPTADSLHIGHLAAILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAK 91
Query: 289 AVV---------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
V NN W ++VI F+ + + F + M+ K
Sbjct: 92 ETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAK 151
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+SV +R+E+ G+++TEFSY + Q+YD+ LY+ CR Q
Sbjct: 152 ESVQSRIET--GISFTEFSYMMLQAYDFLRLYETEGCRLQ 189
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 45/153 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R TV+ + I++ + D + P
Sbjct: 69 VGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFL---------DFEADGNPAK 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W ++VI F+ + + F + M+ K+SV
Sbjct: 120 IKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLR 179
Query: 204 -----------GGSDQMGNIKAGHDLISKLYGK 225
GGSDQ GNI AG +LI K G+
Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGE 212
>pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 319
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 37/160 (23%)
Query: 237 TVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW--------RTCNEE 288
T+Y GFDPTA S +Q+AGH+ IAL+ + ++ RT N +
Sbjct: 32 TLYCGFDPTADSLHIGHLASILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAK 91
Query: 289 AVV---------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
V NN W ++VI F+ + + F + M+ K
Sbjct: 92 ETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAK 151
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+SV +R+E+ G+++TEFSY + Q+YD+ LY+ CR Q
Sbjct: 152 ESVQSRIET--GISFTEFSYMMLQAYDFLRLYETEGCRLQ 189
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 45/153 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R TV+ + I++ + D + P
Sbjct: 69 VGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFL---------DFEADGNPAK 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W ++VI F+ + + F + M+ K+SV
Sbjct: 120 IKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLR 179
Query: 204 -----------GGSDQMGNIKAGHDLISKLYGK 225
GGSDQ GNI AG +LI K G+
Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGE 212
>pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
pdb|4TS1|B Chain B, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
Length = 319
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 37/160 (23%)
Query: 237 TVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW--------RTCNEE 288
T+Y GFDPTA S +Q+AGH+ IAL+ + ++ RT N +
Sbjct: 32 TLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAK 91
Query: 289 AVV---------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
V NN W ++VI F+ + + F + M+ K
Sbjct: 92 ETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAK 151
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+SV +R+E+ G+++TEFSY + Q+YD+ LY+ CR Q
Sbjct: 152 ESVQSRIET--GISFTEFSYMMLQAYDFLRLYETEGCRLQ 189
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 45/153 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R TV+ + I++ + D + P
Sbjct: 69 VGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFL---------DFEADGNPAK 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W ++VI F+ + + F + M+ K+SV
Sbjct: 120 IKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLR 179
Query: 204 -----------GGSDQMGNIKAGHDLISKLYGK 225
GGSDQ GNI AG +LI K G+
Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGE 212
>pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 37/160 (23%)
Query: 237 TVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW--------RTCNEE 288
T+Y GFDPTA S +Q+AGH+ IAL+ + ++ RT N +
Sbjct: 32 TLYCGFDPTADSLHIGHLAPILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAK 91
Query: 289 AVV---------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
V NN W ++VI F+ + + F + M+ K
Sbjct: 92 ETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAK 151
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+SV +R+E+ G+++TEFSY + Q+YD+ LY+ CR Q
Sbjct: 152 ESVQSRIET--GISFTEFSYMMLQAYDFLRLYETEGCRLQ 189
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 45/153 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R TV+ + I++ + D + P
Sbjct: 69 VGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFL---------DFEADGNPAK 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W ++VI F+ + + F + M+ K+SV
Sbjct: 120 IKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLR 179
Query: 204 -----------GGSDQMGNIKAGHDLISKLYGK 225
GGSDQ GNI AG +LI K G+
Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGE 212
>pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 37/160 (23%)
Query: 237 TVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW--------RTCNEE 288
T+Y GFDPTA S +Q+AGH+ IAL+ + ++ RT N +
Sbjct: 32 TLYCGFDPTADSLHIGHLAGILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAK 91
Query: 289 AVV---------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
V NN W ++VI F+ + + F + M+ K
Sbjct: 92 ETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAK 151
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+SV +R+E+ G+++TEFSY + Q+YD+ LY+ CR Q
Sbjct: 152 ESVQSRIET--GISFTEFSYMMLQAYDFLRLYETEGCRLQ 189
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 45/153 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R TV+ + I++ + D + P
Sbjct: 69 VGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFL---------DFEADGNPAK 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W ++VI F+ + + F + M+ K+SV
Sbjct: 120 IKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLR 179
Query: 204 -----------GGSDQMGNIKAGHDLISKLYGK 225
GGSDQ GNI AG +LI K G+
Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGE 212
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 36/167 (21%)
Query: 231 LVRTPQTVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW-------- 282
L + P +Y GFDPTA S +Q+AGH+ +AL+ + ++
Sbjct: 25 LAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAE 84
Query: 283 RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFRM 315
R N E V NN W+ ++NV+ F+ I + F +
Sbjct: 85 RKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSV 144
Query: 316 GDMLKKQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
M+ K++V RL E G+++TEFSY + Q YD+A L K++ Q
Sbjct: 145 NQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQ 191
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 48/163 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R TVQ I K + D I
Sbjct: 68 VGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFL---------DFDCGENSAI 118
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
NN W+ ++NV+ F+ I + F + M+ K++V
Sbjct: 119 AANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYD 178
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GGSDQ GNI +G DL +L+ VF L V
Sbjct: 179 FACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTV 221
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 36/167 (21%)
Query: 231 LVRTPQTVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW-------- 282
L + P +Y GFDPTA S +Q+AGH+ +AL+ + ++
Sbjct: 29 LAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAE 88
Query: 283 RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFRM 315
R N E V NN W+ ++NV+ F+ I + F +
Sbjct: 89 RKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSV 148
Query: 316 GDMLKKQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
M+ K++V RL E G+++TEFSY + Q YD+A L K++ Q
Sbjct: 149 NQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQ 195
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 48/163 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R TVQ I K + D I
Sbjct: 72 VGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFL---------DFDCGENSAI 122
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
NN W+ ++NV+ F+ I + F + M+ K++V
Sbjct: 123 AANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYD 182
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GGSDQ GNI +G DL +L+ VF L V
Sbjct: 183 FACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQNQVFGLTV 225
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 36/168 (21%)
Query: 229 DLLVRTPQTVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQIL------- 281
DLL + T+Y G DPTA S +Q GH+ I L+ + ++
Sbjct: 26 DLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKS 85
Query: 282 ---------------------------WRTCNEEAVVNNMSWYNSINVIDFMNHIARLFR 314
+ T + +VNN W I++I F+ +
Sbjct: 86 EERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVG 145
Query: 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362
+ ML K S+ +RLE HG++YTEF+Y I Q+ D+ HL +E NC+ Q
Sbjct: 146 VNYMLGKDSIQSRLE--HGISYTEFTYTILQAIDFGHLNRELNCKIQV 191
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 46/154 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
IGG T +GDPSGK+++R Q V N +GI K + IF F D +
Sbjct: 71 IGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFE-----FGTDHG-----AV 120
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQS-------------------------- 202
+VNN W I++I F+ + + ML K S
Sbjct: 121 LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGH 180
Query: 203 ----------VGGSDQMGNIKAGHDLISKLYGKT 226
VGGSDQ GNI +G +L+ ++YG+T
Sbjct: 181 LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQT 214
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 36/164 (21%)
Query: 231 LVRTPQTVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW-------- 282
L + P + GFDPTA S +Q+AGH+ +AL+ + ++
Sbjct: 29 LAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAE 88
Query: 283 RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFRM 315
R N E V NN W+ ++NV+ F+ I + F +
Sbjct: 89 RKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSV 148
Query: 316 GDMLKKQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHNC 358
M+ K++V RL E G+++TEFSY + Q YD+A L K++
Sbjct: 149 NQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQYGV 192
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 48/163 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R TVQ I K + D I
Sbjct: 72 VGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFL---------DFDCGENSAI 122
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
NN W+ ++NV+ F+ I + F + M+ K++V
Sbjct: 123 AANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYD 182
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GGSDQ GNI +G DL +L+ VF L V
Sbjct: 183 FACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTV 225
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 36/162 (22%)
Query: 231 LVRTPQTVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW-------- 282
L + P + GFDPTA S +Q+AGH+ +AL+ + ++
Sbjct: 28 LAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAE 87
Query: 283 RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFRM 315
R N E V NN W+ ++NV+ F+ I + F +
Sbjct: 88 RKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSV 147
Query: 316 GDMLKKQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEH 356
M+ K++V RL E G+++TEFSY + Q YD+A L K++
Sbjct: 148 NQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQY 189
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 48/163 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R TVQ I K + D I
Sbjct: 71 VGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFL---------DFDCGENSAI 121
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
NN W+ ++NV+ F+ I + F + M+ K++V
Sbjct: 122 AANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYD 181
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GGSDQ GNI +G DL +L+ VF L V
Sbjct: 182 FACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTV 224
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 36/162 (22%)
Query: 231 LVRTPQTVYAGFDPTASSXXXXXXXXXXXXXXWQRAGHQVIALMICLSQILW-------- 282
L + P + GFDPTA S +Q+AGH+ +AL+ + ++
Sbjct: 25 LAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAE 84
Query: 283 RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFRM 315
R N E V NN W+ ++NV+ F+ I + F +
Sbjct: 85 RKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSV 144
Query: 316 GDMLKKQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEH 356
M+ K++V RL E G+++TEFSY + Q YD+A L K++
Sbjct: 145 NQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQY 186
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 61/163 (37%), Gaps = 48/163 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R TVQ I K + D I
Sbjct: 68 VGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFL---------DFDCGENSAI 118
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
NN W+ ++NV+ F+ I + F + M+ K++V
Sbjct: 119 AANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYD 178
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GGSDQ GNI +G DL +L+ VF L V
Sbjct: 179 FACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTV 221
>pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18
Protein
pdb|2RKJ|A Chain A, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|B Chain B, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|E Chain E, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|F Chain F, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|I Chain I, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|J Chain J, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|M Chain M, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|N Chain N, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
Length = 392
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 285 CNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIF 344
+ +VNN W+N +++ + + R+G ML + +V ++ G+++ EF+Y I
Sbjct: 160 ARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIM 219
Query: 345 QSYDWAHLYKEHNCRFQ 361
Q +DW L+ + + Q
Sbjct: 220 QGWDWFELFYQQGVQMQ 236
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 40/151 (26%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKD--RKDSLKP 166
IGG+TA++GDP+G+ K RD + N I +K ++ N + D +
Sbjct: 103 IGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARK 162
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
+VNN W+N +++ + + R+G ML + +V
Sbjct: 163 RGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGW 222
Query: 204 ---------------GGSDQMGNIKAGHDLI 219
GGSDQ GNI +G +++
Sbjct: 223 DWFELFYQQGVQMQIGGSDQYGNIISGLEVV 253
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 84 QQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLA--TVQTNTKGI 141
Q+ E DL + F T E K+G + DP+ K D A T+ + K I
Sbjct: 137 QKQHIELTRDLAERFFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTI 196
Query: 142 EKNIKTIFRN 151
EK IK+ N
Sbjct: 197 EKKIKSAISN 206
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3F|B Chain B, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3E|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Wild-Type Trnatyr(Gua) And With Atp And
Tyrosinol
Length = 432
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYF 156
IG T +GDPSG++K R L + N K I R F
Sbjct: 76 IGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLF 123
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 200 KQSVGGSDQMGNIKAGHDL-----ISKLYGKTVFDLLVRTPQTVYAGFDP 244
K ++ D GN++ G+ + ++KL+G D TPQTV A ++P
Sbjct: 444 KLAIDRDDLYGNVQRGYAVNHDRELAKLFGPVDRDEWFMTPQTVNAYYNP 493
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,102,631
Number of Sequences: 62578
Number of extensions: 381403
Number of successful extensions: 943
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 62
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)