BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14958
(362 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W107|SYYM_DROME Probable tyrosine--tRNA ligase, mitochondrial OS=Drosophila
melanogaster GN=CG16912 PE=2 SV=1
Length = 464
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 102/192 (53%), Gaps = 46/192 (23%)
Query: 216 HDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMI 275
H + + L R Q++YAGFDPTA SLH+GNLL+++ LIH QRAGH+ IAL+
Sbjct: 38 HGIFPDTAAPRMKQLFTRGQQSIYAGFDPTADSLHVGNLLVIMGLIHCQRAGHRPIALVG 97
Query: 276 CLSQI----------------------------------------LWRTCNEE------A 289
+ + LW + ++
Sbjct: 98 GATGLIGDPSGRKTERNQLGETVIETNLKAIEQQLRRVFENHENCLWDSKKQKLPLAPLI 157
Query: 290 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDW 349
+VNN WY + +IDF+ ++ R FRMG ML + SV +RLESE GM++TEF+YQIFQ+YDW
Sbjct: 158 IVNNADWYADLQLIDFVANMGRHFRMGSMLSRSSVQSRLESEDGMSFTEFTYQIFQAYDW 217
Query: 350 AHLYKEHNCRFQ 361
HL + HNC FQ
Sbjct: 218 LHLLRRHNCCFQ 229
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 41/163 (25%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFW--KDRKDSLKP 166
+GGAT +GDPSG+ +R++ ++TN K IE+ ++ +F NHE W K +K L P
Sbjct: 96 VGGATGLIGDPSGRKTERNQLGETVIETNLKAIEQQLRRVFENHENCLWDSKKQKLPLAP 155
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
I+VNN WY + +IDF+ ++ R FRMG ML + SV
Sbjct: 156 LIIVNNADWYADLQLIDFVANMGRHFRMGSMLSRSSVQSRLESEDGMSFTEFTYQIFQAY 215
Query: 204 ---------------GGSDQMGNIKAGHDLISKLYGK-TVFDL 230
GGSDQ GN+ GH+LIS++ K VF L
Sbjct: 216 DWLHLLRRHNCCFQMGGSDQTGNLMTGHELISRVERKREVFGL 258
>sp|A1A1W2|SYY_BIFAA Tyrosine--tRNA ligase OS=Bifidobacterium adolescentis (strain ATCC
15703 / DSM 20083 / NCTC 11814 / E194a) GN=tyrS PE=3
SV=1
Length = 435
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 87/157 (55%), Gaps = 33/157 (21%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------RTCNE 287
P T Y GFDPTA+SLHIGNL+ LIN+ H Q AGH IAL+ + ++ RT N
Sbjct: 42 PITYYCGFDPTAASLHIGNLVQLINMRHLQAAGHHPIALVGGATGLIGDPRQSGERTLNP 101
Query: 288 EAVV--------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
+ VV +N W S+NVIDF+ + + FRMG ML K
Sbjct: 102 KDVVAGWADRLKKQIGGILETEGSNPVRFVSNYDWTASMNVIDFLRDVGKNFRMGTMLAK 161
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNC 358
+V RL SE G+++TEFSYQ+ Q D+ HL+ E++C
Sbjct: 162 DTVARRLNSEEGISFTEFSYQVLQGNDFLHLFDEYHC 198
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 61/157 (38%), Gaps = 49/157 (31%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDP ++ +R V ++K I I + P
Sbjct: 81 VGGATGLIGDPR-QSGERTLNPKDVVAGWADRLKKQIGGILET----------EGSNPVR 129
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V+N W S+NVIDF+ + + FRMG ML K +V
Sbjct: 130 FVSNYDWTASMNVIDFLRDVGKNFRMGTMLAKDTVARRLNSEEGISFTEFSYQVLQGNDF 189
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTV 227
GGSDQ GN+ +G DLI K+ G V
Sbjct: 190 LHLFDEYHCVLEIGGSDQWGNLTSGLDLIHKVRGVDV 226
>sp|B7GTN2|SYY_BIFLS Tyrosine--tRNA ligase OS=Bifidobacterium longum subsp. infantis
(strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 /
S12) GN=tyrS PE=3 SV=1
Length = 440
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 33/160 (20%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------RTCNE 287
P T Y GFDPTA+SLHIGNL+ LIN+ H Q AGH IAL+ + ++ RT N
Sbjct: 42 PITYYCGFDPTAASLHIGNLVQLINMRHLQLAGHHPIALVGGATGLIGDPRQSGERTLNP 101
Query: 288 EAVV--------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
+ VV +N W S+ VIDF+ + + FR+G ML K
Sbjct: 102 KDVVAGWADRLKNQIGGILDTEGANAVRFVSNYDWTASMTVIDFLRDVGKNFRLGTMLAK 161
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+V RL SE G+++TEFSYQ+ Q D+ HL+ E++C +
Sbjct: 162 DTVARRLNSEEGISFTEFSYQVLQGNDFLHLFDEYHCTLE 201
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 58/157 (36%), Gaps = 49/157 (31%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDP ++ +R V ++ I I +
Sbjct: 81 VGGATGLIGDPR-QSGERTLNPKDVVAGWADRLKNQIGGILDT----------EGANAVR 129
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V+N W S+ VIDF+ + + FR+G ML K +V
Sbjct: 130 FVSNYDWTASMTVIDFLRDVGKNFRLGTMLAKDTVARRLNSEEGISFTEFSYQVLQGNDF 189
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTV 227
GGSDQ GN+ +G DLI K+ G V
Sbjct: 190 LHLFDEYHCTLELGGSDQWGNLTSGLDLIHKVRGVDV 226
>sp|B3DSX9|SYY_BIFLD Tyrosine--tRNA ligase OS=Bifidobacterium longum (strain DJO10A)
GN=tyrS PE=3 SV=1
Length = 440
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 33/160 (20%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------RTCNE 287
P T Y GFDPTA+SLHIGNL+ LIN+ H Q AGH IAL+ + ++ RT N
Sbjct: 42 PITYYCGFDPTAASLHIGNLVQLINMRHLQLAGHHPIALVGGATGLIGDPRQSGERTLNP 101
Query: 288 EAVV--------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
+ VV +N W S+ VIDF+ + + FR+G ML K
Sbjct: 102 KDVVAGWADRLKNQIGGILDTEGANAVRFVSNYDWTASMTVIDFLRDVGKNFRLGTMLAK 161
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+V RL SE G+++TEFSYQ+ Q D+ HL+ E++C +
Sbjct: 162 DTVARRLNSEEGISFTEFSYQVLQGNDFLHLFDEYHCTLE 201
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 58/157 (36%), Gaps = 49/157 (31%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDP ++ +R V ++ I I +
Sbjct: 81 VGGATGLIGDPR-QSGERTLNPKDVVAGWADRLKNQIGGILDT----------EGANAVR 129
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V+N W S+ VIDF+ + + FR+G ML K +V
Sbjct: 130 FVSNYDWTASMTVIDFLRDVGKNFRLGTMLAKDTVARRLNSEEGISFTEFSYQVLQGNDF 189
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTV 227
GGSDQ GN+ +G DLI K+ G V
Sbjct: 190 LHLFDEYHCTLELGGSDQWGNLTSGLDLIHKVRGVDV 226
>sp|Q8G5G1|SYY_BIFLO Tyrosine--tRNA ligase OS=Bifidobacterium longum (strain NCC 2705)
GN=tyrS PE=3 SV=1
Length = 440
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 87/160 (54%), Gaps = 33/160 (20%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------RTCNE 287
P T Y GFDPTA+SLHIGNL+ LIN+ H Q AGH IAL+ + ++ RT N
Sbjct: 42 PITYYCGFDPTAASLHIGNLVQLINMRHLQLAGHHPIALVGGATGLIGDPRQSGERTLNP 101
Query: 288 EAVV--------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
+ VV +N W S+ VIDF+ + + FR+G ML K
Sbjct: 102 KDVVAGWADRLKNQIGGILDTEGANAVRFVSNYDWTASMTVIDFLRDVGKNFRLGTMLAK 161
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+V RL SE G+++TEFSYQ+ Q D+ HL+ E++C +
Sbjct: 162 DTVARRLNSEEGISFTEFSYQVLQGNDFLHLFDEYHCTLE 201
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 58/157 (36%), Gaps = 49/157 (31%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDP ++ +R V ++ I I +
Sbjct: 81 VGGATGLIGDPR-QSGERTLNPKDVVAGWADRLKNQIGGILDT----------EGANAVR 129
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V+N W S+ VIDF+ + + FR+G ML K +V
Sbjct: 130 FVSNYDWTASMTVIDFLRDVGKNFRLGTMLAKDTVARRLNSEEGISFTEFSYQVLQGNDF 189
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTV 227
GGSDQ GN+ +G DLI K+ G V
Sbjct: 190 LHLFDEYHCTLELGGSDQWGNLTSGLDLIHKVRGVDV 226
>sp|Q8BYL4|SYYM_MOUSE Tyrosine--tRNA ligase, mitochondrial OS=Mus musculus GN=Yars2 PE=2
SV=2
Length = 472
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 42/170 (24%)
Query: 234 TPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW----RTCNEEA 289
+PQTVY GFDPT SLH+G+LL L+ L H+QRAGH VIAL+ + +L RT EA
Sbjct: 67 SPQTVYCGFDPTGDSLHVGHLLTLLGLFHFQRAGHNVIALVGGSTALLGDPSGRTKGREA 126
Query: 290 --------------------------------------VVNNMSWYNSINVIDFMNHIAR 311
V++N +W+ +++DF+ +
Sbjct: 127 LSAECVRANAHALRRGLEALAANHARLFADGRPWGSFTVLDNAAWFQEQHLVDFLATVGG 186
Query: 312 LFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
FRMG +L + SV +RL+S GM+ EF YQ+ Q+YD+ +L++ + CR Q
Sbjct: 187 HFRMGTLLSRLSVQSRLKSPEGMSLAEFFYQVLQAYDFYYLFQHYGCRVQ 236
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 42/163 (25%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRK-DSLKPP 167
+GG+TA +GDPSG+TK R+ V+ N + + ++ + NH + F R S
Sbjct: 107 VGGSTALLGDPSGRTKGREALSAECVRANAHALRRGLEALAANHARLFADGRPWGSF--- 163
Query: 168 IVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------ 203
V++N +W+ +++DF+ + FRMG +L + SV
Sbjct: 164 TVLDNAAWFQEQHLVDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFFYQVLQAYD 223
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GGSDQ+GNI +G++ I KL G+ VF + V
Sbjct: 224 FYYLFQHYGCRVQLGGSDQLGNIMSGYEFIHKLTGEDVFGITV 266
>sp|Q5I0L3|SYYM_RAT Tyrosine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Yars2
PE=2 SV=1
Length = 471
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 42/170 (24%)
Query: 234 TPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW----RTCNEEA 289
+PQTVY GFDPT SLH+G+LL L+ L H+QRAGH VIAL+ + +L RT EA
Sbjct: 66 SPQTVYCGFDPTGDSLHVGHLLTLLGLFHFQRAGHNVIALVGGSTALLGDPSGRTKEREA 125
Query: 290 --------------------------------------VVNNMSWYNSINVIDFMNHIAR 311
V++N +W+ +++DF+ +
Sbjct: 126 LSAECVRANARALQRGLETLAANHARLFADGRPWGTFTVLDNAAWFQKQHLMDFLATVGG 185
Query: 312 LFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
FRMG +L + SV +RL+S GM+ EF YQ+ Q+YD+ +L++ + CR Q
Sbjct: 186 HFRMGTLLSRLSVQSRLKSPEGMSLAEFFYQVLQAYDFYYLFRHYGCRVQ 235
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 40/162 (24%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GG+TA +GDPSG+TK+R+ V+ N + +++ ++T+ NH + F R
Sbjct: 106 VGGSTALLGDPSGRTKEREALSAECVRANARALQRGLETLAANHARLFADGRPWGTF--T 163
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V++N +W+ +++DF+ + FRMG +L + SV
Sbjct: 164 VLDNAAWFQKQHLMDFLATVGGHFRMGTLLSRLSVQSRLKSPEGMSLAEFFYQVLQAYDF 223
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GGSDQ+GNI +G++ I KL G+ VF + V
Sbjct: 224 YYLFRHYGCRVQLGGSDQLGNIMSGYEFIHKLTGEDVFGITV 265
>sp|Q7UM14|SYY_RHOBA Tyrosine--tRNA ligase OS=Rhodopirellula baltica (strain SH1)
GN=tyrS PE=3 SV=1
Length = 438
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 34/170 (20%)
Query: 227 VFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL----- 281
+ +LL PQT+Y GFDPTA+SLH+G ++ L+ L +QRAGH IAL+ + ++
Sbjct: 35 IAELLNSGPQTIYIGFDPTATSLHVGGMMQLMMLRRFQRAGHNPIALVGGATGMIGDPSG 94
Query: 282 -----------------------------WRTCNEEAVVNNMSWYNSINVIDFMNHIARL 312
+ N ++NN W + ++F+ + +
Sbjct: 95 KSEERNLLSADQLQKNVDGVAAQMRHFLDFEGDNAAKLLNNFDWMKDYSYLEFLRDVGKN 154
Query: 313 FRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362
F +G M+ K+SV +RLESE G++YTEFSY + Q+YD+ +L + H+CR QA
Sbjct: 155 FPVGAMMGKESVRSRLESEAGLSYTEFSYMLLQAYDFVNLAQTHDCRIQA 204
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 48/160 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK+++R+ +Q N G+ ++ H F D L
Sbjct: 82 VGGATGMIGDPSGKSEERNLLSADQLQKNVDGVAAQMR-----HFLDFEGDNAAKL---- 132
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+NN W + ++F+ + + F +G M+ K+SV
Sbjct: 133 -LNNFDWMKDYSYLEFLRDVGKNFPVGAMMGKESVRSRLESEAGLSYTEFSYMLLQAYDF 191
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GGSDQ GNI AG DL ++ GK +F +
Sbjct: 192 VNLAQTHDCRIQAGGSDQWGNITAGIDLGRRMLGKQLFGI 231
>sp|Q6AGC2|SYY_LEIXX Tyrosine--tRNA ligase OS=Leifsonia xyli subsp. xyli (strain CTCB07)
GN=tyrS PE=3 SV=1
Length = 442
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 33/165 (20%)
Query: 230 LLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW------- 282
LL P Y GFDPTA SLH+GNL+ L+ + Q AGH+ L+ + ++
Sbjct: 46 LLAGEPIAYYCGFDPTAPSLHLGNLVQLLTMRRLQLAGHRPFGLVGGSTGLIGDPKPSAE 105
Query: 283 RTCNEEA--------------------------VVNNMSWYNSINVIDFMNHIARLFRMG 316
RT N + +VNN+ W ++ IDF+ I + FR+G
Sbjct: 106 RTLNAKETVAEWVGSLREQVTRFLSAEGDNAVRLVNNLDWTAPLSAIDFLREIGKHFRVG 165
Query: 317 DMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
MLKK +V RL S+ G++YTEFSYQI Q D+ LY++H C Q
Sbjct: 166 AMLKKDAVAARLNSDEGISYTEFSYQILQGLDYLELYRQHGCVLQ 210
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 49/156 (31%)
Query: 107 GKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKP 166
G +GG+T +GDP K ++ L +T + + + ++ ++ + ++++
Sbjct: 88 GLVGGSTGLIGDP----KPSAERTLNAKET----VAEWVGSLREQVTRFLSAEGDNAVR- 138
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
+VNN+ W ++ IDF+ I + FR+G MLKK +V
Sbjct: 139 --LVNNLDWTAPLSAIDFLREIGKHFRVGAMLKKDAVAARLNSDEGISYTEFSYQILQGL 196
Query: 204 ---------------GGSDQMGNIKAGHDLISKLYG 224
GGSDQ GN+ +G +LI ++ G
Sbjct: 197 DYLELYRQHGCVLQTGGSDQWGNLTSGTELIRRVEG 232
>sp|A0LUB6|SYY_ACIC1 Tyrosine--tRNA ligase OS=Acidothermus cellulolyticus (strain ATCC
43068 / 11B) GN=tyrS PE=3 SV=1
Length = 426
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 37/164 (22%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL------------- 281
P TVY GFDPTA SLHIG+L+ ++ L +Q AGH+ IAL+ + ++
Sbjct: 31 PITVYCGFDPTAPSLHIGHLVQILTLRRFQDAGHRPIALVGGATGLIGDPSGRTTERALN 90
Query: 282 -------W-----------------RTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGD 317
W R VNN+ W + I+F+ + + FR+G
Sbjct: 91 DPDVVAGWAERIHRQLAPFLDFTGERAGQPAIAVNNLEWTGRLTAIEFLRDVGKHFRVGR 150
Query: 318 MLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
ML K+ V RL SE G++YTEFSYQI QS D+ LY+ + C Q
Sbjct: 151 MLAKEVVAARLRSEQGISYTEFSYQILQSLDFLELYRRYRCVLQ 194
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 45/160 (28%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSG+T +R D V + I + + F +R +P I
Sbjct: 70 VGGATGLIGDPSGRTTERALNDPDVVAGWAERIHRQLAPFLD-----FTGERAG--QPAI 122
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
VNN+ W + I+F+ + + FR+G ML K+ V
Sbjct: 123 AVNNLEWTGRLTAIEFLRDVGKHFRVGRMLAKEVVAARLRSEQGISYTEFSYQILQSLDF 182
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GG DQ GN+ +G +LI K+ G V L
Sbjct: 183 LELYRRYRCVLQIGGIDQWGNLTSGIELIHKVEGVDVHAL 222
>sp|Q87J85|SYY1_VIBPA Tyrosine--tRNA ligase 1 OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=tyrS1 PE=3 SV=1
Length = 419
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 35/166 (21%)
Query: 231 LVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------- 282
L+ PQTVY GFDPTA SLHIG+L+ LI L +Q AGHQ +AL+ + ++
Sbjct: 27 LLSQPQTVYCGFDPTAGSLHIGHLVPLIMLKRFQDAGHQAVALIGGATGMIGDPSFKATE 86
Query: 283 RTCNEEAV--------------------------VNNMSWYNSINVIDFMNHIARLFRMG 316
R+ N + VNN W +INVIDF + + F +
Sbjct: 87 RSLNSAEIVSGWVNDLSNQIQQLMNHQLSKPMIMVNNADWMRAINVIDFFRDVGKHFSIN 146
Query: 317 DMLKKQSVVTRLE-SEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
M+ ++SV RL+ + G+++TEFSY + QSYD+A L +++ CR Q
Sbjct: 147 TMINRESVKQRLQRPDQGISFTEFSYALLQSYDFAELNRQYGCRLQ 192
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 64/161 (39%), Gaps = 49/161 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
IGGAT +GDPS K +R V + I+ + NH+ KP I
Sbjct: 70 IGGATGMIGDPSFKATERSLNSAEIVSGWVNDLSNQIQQLM-NHQLS---------KPMI 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN W +INVIDF + + F + M+ ++SV
Sbjct: 120 MVNNADWMRAINVIDFFRDVGKHFSINTMINRESVKQRLQRPDQGISFTEFSYALLQSYD 179
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GG+DQ GNI +G DL + G+ VF L
Sbjct: 180 FAELNRQYGCRLQIGGNDQWGNIVSGIDLTRRQNGEQVFGL 220
>sp|Q54WD9|SYYM_DICDI Probable tyrosine--tRNA ligase, mitochondrial OS=Dictyostelium
discoideum GN=mtyrS PE=3 SV=1
Length = 482
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 32/157 (20%)
Query: 237 TVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWRTCNEEA------- 289
++YAGFDPTA SLHIGNLL L+ ++H++R GH IALM + ++ + +
Sbjct: 83 SLYAGFDPTADSLHIGNLLTLMVMLHFKRHGHNPIALMGGATALIGDPSGKSSDRVMLTE 142
Query: 290 -----------------------VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVT 326
VVNN+ W +++VI F+ + FR+G M+KK +
Sbjct: 143 EFIEGNLKHIRENITAVLGEDTLVVNNIEWNKTMDVISFLREVGSYFRVGSMIKKDFIQN 202
Query: 327 RLE--SEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
RL +E+G+++TEF Y +FQ+ D+AHL+ +H C Q
Sbjct: 203 RLSDSNENGISFTEFCYSLFQANDFAHLFLKHGCSIQ 239
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 65/153 (42%), Gaps = 54/153 (35%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGATA +GDPSGK+ DR V + IE N+K I N +D +
Sbjct: 120 MGGATALIGDPSGKSSDR-------VMLTEEFIEGNLKHIRENITAVLGED-------TL 165
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQ--------------------------- 201
VVNN+ W +++VI F+ + FR+G M+KK
Sbjct: 166 VVNNIEWNKTMDVISFLREVGSYFRVGSMIKKDFIQNRLSDSNENGISFTEFCYSLFQAN 225
Query: 202 -------------SVGGSDQMGNIKAGHDLISK 221
+GGSDQ GNI AG DLI K
Sbjct: 226 DFAHLFLKHGCSIQIGGSDQWGNITAGCDLIRK 258
>sp|Q9KUQ0|SYY1_VIBCH Tyrosine--tRNA ligase 1 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=tyrS1 PE=3 SV=2
Length = 426
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 37/165 (22%)
Query: 234 TPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL------------ 281
TPQ +Y GFDPTA SLHIG+L+ L+ L +Q AGHQ IAL+ + ++
Sbjct: 31 TPQVLYCGFDPTAGSLHIGHLVPLLMLKRFQNAGHQAIALIGGATGMIGDPSFKANERVL 90
Query: 282 --------W----------------RTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGD 317
W C VNN W IN+IDF + + F +
Sbjct: 91 NSAQTVQQWVSDLSQQITQLMTSQGENCASLMAVNNADWIGKINLIDFFRDVGKHFSVNA 150
Query: 318 MLKKQSVVTRL-ESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
M+ ++SV RL + G+++TEFSY + QSYD+AHL +E C Q
Sbjct: 151 MINRESVKQRLARPDQGISFTEFSYSLLQSYDFAHLNREFGCALQ 195
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 47/161 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
IGGAT +GDPS K +R TVQ + + I + + + ++ +
Sbjct: 71 IGGATGMIGDPSFKANERVLNSAQTVQQWVSDLSQQITQLMTS--------QGENCASLM 122
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
VNN W IN+IDF + + F + M+ ++SV
Sbjct: 123 AVNNADWIGKINLIDFFRDVGKHFSVNAMINRESVKQRLARPDQGISFTEFSYSLLQSYD 182
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GG+DQ GNI +G DL +L G V L
Sbjct: 183 FAHLNREFGCALQIGGNDQWGNIVSGIDLTRRLNGVEVCGL 223
>sp|Q6MC06|SYY_PARUW Tyrosine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25)
GN=tyrS PE=3 SV=1
Length = 425
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 35/166 (21%)
Query: 231 LVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWRTCNEEA- 289
L P VY GFDPTA SLH+GNL+ ++ L +QR GH +A++ + ++ + A
Sbjct: 25 LTNQPIKVYCGFDPTADSLHLGNLVAIMGLAWFQRFGHTPVAIVGGATGMIGDPSGKNAE 84
Query: 290 ----------------------------------VVNNMSWYNSINVIDFMNHIARLFRM 315
++NN+ W+ + I F+ + +LFR+
Sbjct: 85 RQLLDEKKIQLNLKGISKNLEAILDFNHPTAPAIILNNLDWFKNFTFISFLRDVGKLFRL 144
Query: 316 GDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
ML K SV TRL SE GM++TEF YQI Q YD+ HL++ + +
Sbjct: 145 SPMLAKDSVKTRLNSEEGMSFTEFCYQILQGYDFLHLFENYGVTVE 190
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 47/160 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R D +Q N KGI KN++ I D P I
Sbjct: 68 VGGATGMIGDPSGKNAERQLLDEKKIQLNLKGISKNLEAIL---------DFNHPTAPAI 118
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
++NN+ W+ + I F+ + +LFR+ ML K SV
Sbjct: 119 ILNNLDWFKNFTFISFLRDVGKLFRLSPMLAKDSVKTRLNSEEGMSFTEFCYQILQGYDF 178
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GGSDQ GNI AG DLI K++ K + +
Sbjct: 179 LHLFENYGVTVELGGSDQWGNITAGTDLIRKVHAKPAYGI 218
>sp|B1ZUZ4|SYY_OPITP Tyrosine--tRNA ligase OS=Opitutus terrae (strain DSM 11246 /
PB90-1) GN=tyrS PE=3 SV=1
Length = 425
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 35/166 (21%)
Query: 231 LVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL----------------- 273
L + P T+Y GFDPTA SLH+GNL+ L+ L +Q GH IAL
Sbjct: 26 LGQGPVTLYCGFDPTADSLHVGNLVPLLALRRFQLHGHHPIALAGGATGMVGDPSGRSAE 85
Query: 274 ------------MICLSQILWR------TCNEEAVVNNMSWYNSINVIDFMNHIARLFRM 315
+ + Q L R T N +V+N +W I+ ++F+ + + F +
Sbjct: 86 RNLLTPDQVAHNIASIKQQLGRFLDFDATTNPARMVDNSTWTAPISFLEFLRDVGKHFSV 145
Query: 316 GDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
ML K+SV RLESE G++YTEFSY + Q++D+ HL + NC Q
Sbjct: 146 NAMLAKESVRARLESESGISYTEFSYMLLQAHDFLHLRETMNCELQ 191
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 51/173 (29%)
Query: 110 GGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIV 169
GGAT VGDPSG++ +R+ V N I++ + D + P +
Sbjct: 70 GGATGMVGDPSGRSAERNLLTPDQVAHNIASIKQQLGRFL---------DFDATTNPARM 120
Query: 170 VNNMSWYNSINVIDFMNHIARLFRMGDMLKKQS--------------------------- 202
V+N +W I+ ++F+ + + F + ML K+S
Sbjct: 121 VDNSTWTAPISFLEFLRDVGKHFSVNAMLAKESVRARLESESGISYTEFSYMLLQAHDFL 180
Query: 203 -----------VGGSDQMGNIKAGHDLISKLYGKTV----FDLLVRTPQTVYA 240
VG +DQ GNI AG DLI K G F LL ++ T Y
Sbjct: 181 HLRETMNCELQVGATDQWGNITAGTDLIRKKLGAPAWGLTFPLLTKSDGTKYG 233
>sp|P22326|SYY1_BACSU Tyrosine--tRNA ligase 1 OS=Bacillus subtilis (strain 168) GN=tyrS1
PE=2 SV=2
Length = 422
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 37/159 (23%)
Query: 238 VYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------RTCNEEA 289
+Y+GFDPTA SLHIG+LL ++ L +Q AGH IAL+ + ++ RT N
Sbjct: 34 LYSGFDPTADSLHIGHLLPILTLRRFQLAGHHPIALVGGATGLIGDPSGKKAERTLNTAD 93
Query: 290 VV---------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKKQ 322
+V NN W +NVIDF+ + + F + ML K
Sbjct: 94 IVSEWSQKIKNQLSRFLDFEAAENPAVIANNFDWIGKMNVIDFLRDVGKNFGINYMLAKD 153
Query: 323 SVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+V +R+ES G++YTEFSY I QSYD+ +LY++ NC+ Q
Sbjct: 154 TVSSRIES--GISYTEFSYMILQSYDFLNLYRDKNCKLQ 190
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 59/149 (39%), Gaps = 45/149 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R NT I +N F D + + P +
Sbjct: 70 VGGATGLIGDPSGKKAER--------TLNTADIVSEWSQKIKNQLSRFL-DFEAAENPAV 120
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W +NVIDF+ + + F + ML K +V
Sbjct: 121 IANNFDWIGKMNVIDFLRDVGKNFGINYMLAKDTVSSRIESGISYTEFSYMILQSYDFLN 180
Query: 204 -----------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI AG +LI K
Sbjct: 181 LYRDKNCKLQIGGSDQWGNITAGLELIRK 209
>sp|B8DU64|SYY_BIFA0 Tyrosine--tRNA ligase OS=Bifidobacterium animalis subsp. lactis
(strain AD011) GN=tyrS PE=3 SV=1
Length = 440
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 81/160 (50%), Gaps = 33/160 (20%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALM-------------------- 274
P Y GFDPTA SLHIGNL+ LI + H Q AGH IAL+
Sbjct: 42 PVHYYCGFDPTAPSLHIGNLVQLIIMRHLQEAGHHPIALVGGATGLIGDPRQSGERILNP 101
Query: 275 ------------ICLSQILWRT-CNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
I + IL + N V+N W ++NV+DF+ I + FR+G M+ K
Sbjct: 102 KDIVEQWCERLRIQIGGILEQEGSNPVTFVSNYDWTATMNVLDFLRDIGKNFRVGTMISK 161
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
V RL SE G+++TEFSYQ+ Q D+ +LY ++C +
Sbjct: 162 DIVARRLNSEEGISFTEFSYQVLQGNDYLYLYDHYDCVLE 201
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 49/157 (31%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDP ++ +R V+ + + I I ++ P
Sbjct: 81 VGGATGLIGDPR-QSGERILNPKDIVEQWCERLRIQIGGILE----------QEGSNPVT 129
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V+N W ++NV+DF+ I + FR+G M+ K V
Sbjct: 130 FVSNYDWTATMNVLDFLRDIGKNFRVGTMISKDIVARRLNSEEGISFTEFSYQVLQGNDY 189
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTV 227
GGSDQ GN+ +G DLI K+ G V
Sbjct: 190 LYLYDHYDCVLELGGSDQWGNLTSGLDLIHKVRGVNV 226
>sp|Q9RJ50|SYY_STRCO Tyrosine--tRNA ligase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=tyrS PE=3 SV=1
Length = 422
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 83/164 (50%), Gaps = 33/164 (20%)
Query: 231 LVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMI-CLSQI------LWR 283
L P T Y GFDPTA SLH+G+L+ ++ + Q+AGH+ +AL+ QI R
Sbjct: 27 LADGPVTFYCGFDPTAPSLHVGHLVQVLTVRRLQQAGHRPLALVGGATGQIGDPRPTAER 86
Query: 284 TCNEE--------------------------AVVNNMSWYNSINVIDFMNHIARLFRMGD 317
T N +VNN+ W ++ I+F+ I + FR+
Sbjct: 87 TLNSPETVAGWVERLRGQIEPFLSFEGENAAVMVNNLDWTEGLSAIEFLRDIGKHFRVNK 146
Query: 318 MLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
ML K SV RLES G++YTEFSYQ+ Q+ D+ LY+ + C Q
Sbjct: 147 MLTKDSVARRLESSEGISYTEFSYQLLQAMDFLQLYRRYGCTMQ 190
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 49/152 (32%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT Q+GDP + ++ L + +T +E+ R + F ++ +
Sbjct: 70 VGGATGQIGDP----RPTAERTLNSPETVAGWVER-----LRGQIEPFLSFEGENAA--V 118
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN+ W ++ I+F+ I + FR+ ML K SV
Sbjct: 119 MVNNLDWTEGLSAIEFLRDIGKHFRVNKMLTKDSVARRLESSEGISYTEFSYQLLQAMDF 178
Query: 204 -------------GGSDQMGNIKAGHDLISKL 222
GGSDQ GN+ AG DL+ +L
Sbjct: 179 LQLYRRYGCTMQQGGSDQWGNLTAGLDLLHRL 210
>sp|B1W1W0|SYY_STRGG Tyrosine--tRNA ligase OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=tyrS PE=3 SV=1
Length = 423
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 33/164 (20%)
Query: 231 LVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMI-CLSQI------LWR 283
L P T Y GFDPTA+SLH+G+L+ ++ + Q+AG + +AL+ QI R
Sbjct: 27 LADGPVTFYCGFDPTAASLHVGHLVQVLTMRRLQQAGLKPLALVGGATGQIGDPRPTAER 86
Query: 284 TCNEE--------------------------AVVNNMSWYNSINVIDFMNHIARLFRMGD 317
T N+ +VNN+ W ++ I+F+ I + FR+
Sbjct: 87 TLNDPETIAAWVQRLRGQIEPFLTFEGPNAATMVNNLDWTAGMSAIEFLRDIGKHFRVNK 146
Query: 318 MLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
ML K SV RLES+ G++YTEFSYQ+ Q D+ LY+ H C Q
Sbjct: 147 MLTKDSVARRLESQEGISYTEFSYQLLQGMDFLELYRRHGCTLQ 190
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 50/165 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT Q+GDP T +R D T+ + + I+ +
Sbjct: 70 VGGATGQIGDPR-PTAERTLNDPETIAAWVQRLRGQIEPFLTF----------EGPNAAT 118
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN+ W ++ I+F+ I + FR+ ML K SV
Sbjct: 119 MVNNLDWTAGMSAIEFLRDIGKHFRVNKMLTKDSVARRLESQEGISYTEFSYQLLQGMDF 178
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTVFDLLVRTP 235
GGSDQ GN+ AG DLI +L V L TP
Sbjct: 179 LELYRRHGCTLQQGGSDQWGNLTAGIDLIHRLEPGAVVHALA-TP 222
>sp|Q7MCN7|SYY1_VIBVY Tyrosine--tRNA ligase 1 OS=Vibrio vulnificus (strain YJ016)
GN=tyrS1 PE=3 SV=1
Length = 422
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 85/166 (51%), Gaps = 35/166 (21%)
Query: 231 LVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------- 282
L R PQT+Y GFDPTA SLHIG+L+ LI L +Q AGHQ IAL+ + ++
Sbjct: 28 LFRQPQTLYCGFDPTAGSLHIGHLVPLIMLKRFQDAGHQGIALIGGATGMIGDPSFKASE 87
Query: 283 RTCNEE--------------------------AVVNNMSWYNSINVIDFMNHIARLFRMG 316
R+ N +VNN W SI VI F I + F +
Sbjct: 88 RSLNSAETVAAWVNALATQIQQLMTPHLTQPLVMVNNADWMQSIGVIAFFRDIGKHFSVN 147
Query: 317 DMLKKQSVVTRL-ESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
M++++SV RL + G+++TEFSY + QSYD+A L + H C Q
Sbjct: 148 AMIQRESVKQRLARPDQGISFTEFSYSLLQSYDFAQLNQTHQCALQ 193
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 49/161 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
IGGAT +GDPS K +R TV + I+ + H +P +
Sbjct: 71 IGGATGMIGDPSFKASERSLNSAETVAAWVNALATQIQQLMTPH----------LTQPLV 120
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN W SI VI F I + F + M++++SV
Sbjct: 121 MVNNADWMQSIGVIAFFRDIGKHFSVNAMIQRESVKQRLARPDQGISFTEFSYSLLQSYD 180
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GG+DQ GNI +G DL +L G TV L
Sbjct: 181 FAQLNQTHQCALQIGGNDQWGNIVSGIDLTRRLNGTTVHGL 221
>sp|Q8D5N2|SYY1_VIBVU Tyrosine--tRNA ligase 1 OS=Vibrio vulnificus (strain CMCP6)
GN=tyrS1 PE=3 SV=1
Length = 422
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 85/166 (51%), Gaps = 35/166 (21%)
Query: 231 LVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------- 282
L R PQT+Y GFDPTA SLHIG+L+ LI L +Q AGHQ IAL+ + ++
Sbjct: 28 LFRQPQTLYCGFDPTAGSLHIGHLVPLIMLKRFQDAGHQGIALIGGATGMIGDPSFKASE 87
Query: 283 RTCNEE--------------------------AVVNNMSWYNSINVIDFMNHIARLFRMG 316
R+ N +VNN W SI VI F I + F +
Sbjct: 88 RSLNSAETVAAWVNALATQIQQLMTPHLTQPLVMVNNADWMQSIGVIAFFRDIGKHFSVN 147
Query: 317 DMLKKQSVVTRL-ESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
M++++SV RL + G+++TEFSY + QSYD+A L + H C Q
Sbjct: 148 AMIQRESVKQRLARPDQGISFTEFSYSLLQSYDFAQLNQTHQCALQ 193
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 49/161 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
IGGAT +GDPS K +R TV + I+ + H +P +
Sbjct: 71 IGGATGMIGDPSFKASERSLNSAETVAAWVNALATQIQQLMTPH----------LTQPLV 120
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN W SI VI F I + F + M++++SV
Sbjct: 121 MVNNADWMQSIGVIAFFRDIGKHFSVNAMIQRESVKQRLARPDQGISFTEFSYSLLQSYD 180
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GG+DQ GNI +G DL +L G V L
Sbjct: 181 FAQLNQTHQCALQIGGNDQWGNIVSGIDLTRRLNGTNVHGL 221
>sp|Q83GS7|SYY_TROWT Tyrosine--tRNA ligase OS=Tropheryma whipplei (strain Twist) GN=tyrS
PE=3 SV=1
Length = 471
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 33/166 (19%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMIC------------ 276
+LL P Y GFDPTA SLH+GNL ++ + Q AGH+ IAL+
Sbjct: 31 ELLDGPPIRFYCGFDPTAPSLHVGNLAQILIMRRLQLAGHRPIALVGGSTGLIGDPRPGG 90
Query: 277 --------------------LSQIL-WRTCNEEAVVNNMSWYNSINVIDFMNHIARLFRM 315
LS+ L ++ +VNN+ W S+ +DF+ + + FR+
Sbjct: 91 ERQLHSHEQVQEWVRALQQQLSRFLDFKGAAAAVLVNNLDWTKSLTALDFLRELGKHFRV 150
Query: 316 GDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
MLKK +V RL S G++YTEFSYQI QS D+ LY ++ C Q
Sbjct: 151 NAMLKKDAVAARLSSTEGISYTEFSYQILQSLDFRQLYLDYKCVLQ 196
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 49/157 (31%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GG+T +GDP +R VQ + +++ + D K + +
Sbjct: 76 VGGSTGLIGDPR-PGGERQLHSHEQVQEWVRALQQQLSRFL---------DFKGA-AAAV 124
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN+ W S+ +DF+ + + FR+ MLKK +V
Sbjct: 125 LVNNLDWTKSLTALDFLRELGKHFRVNAMLKKDAVAARLSSTEGISYTEFSYQILQSLDF 184
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTV 227
GGSDQ GNI +G DLI K G V
Sbjct: 185 RQLYLDYKCVLQIGGSDQWGNITSGVDLIRKTEGAGV 221
>sp|Q83HH5|SYY_TROW8 Tyrosine--tRNA ligase OS=Tropheryma whipplei (strain TW08/27)
GN=tyrS PE=3 SV=1
Length = 471
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 33/166 (19%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMIC------------ 276
+LL P Y GFDPTA SLH+GNL ++ + Q AGH+ IAL+
Sbjct: 31 ELLDGPPIRFYCGFDPTAPSLHVGNLAQILIMRRLQLAGHRPIALVGGSTGLIGDPRPGG 90
Query: 277 --------------------LSQIL-WRTCNEEAVVNNMSWYNSINVIDFMNHIARLFRM 315
LS+ L ++ +VNN+ W S+ +DF+ + + FR+
Sbjct: 91 ERQLHSHEQVQEWVRALQQQLSRFLDFKGAAAAVLVNNLDWTKSLTALDFLRELGKHFRV 150
Query: 316 GDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
MLKK +V RL S G++YTEFSYQI QS D+ LY ++ C Q
Sbjct: 151 NAMLKKDAVAARLSSTEGISYTEFSYQILQSLDFRQLYLDYKCVLQ 196
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 49/157 (31%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GG+T +GDP +R VQ + +++ + D K + +
Sbjct: 76 VGGSTGLIGDPR-PGGERQLHSHEQVQEWVRALQQQLSRFL---------DFKGA-AAAV 124
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN+ W S+ +DF+ + + FR+ MLKK +V
Sbjct: 125 LVNNLDWTKSLTALDFLRELGKHFRVNAMLKKDAVAARLSSTEGISYTEFSYQILQSLDF 184
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTV 227
GGSDQ GNI +G DLI K G V
Sbjct: 185 RQLYLDYKCVLQIGGSDQWGNITSGVDLIRKTEGAGV 221
>sp|Q72Z73|SYY1_BACC1 Tyrosine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 10987)
GN=tyrS1 PE=3 SV=1
Length = 418
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 37/167 (22%)
Query: 230 LLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW------- 282
LL + +Y GFDPTA SLHIG++L ++ L +Q AGHQ IAL+ + ++
Sbjct: 25 LLEKESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKA 84
Query: 283 -RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFR 314
RT N + V NN W +++VI F+ I + F
Sbjct: 85 ERTLNTKDTVAYYTESIKNQLSNFLEFENVDNPATMANNYDWLGNLDVISFLRDIGKNFG 144
Query: 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ ML K +V +RLE+ G+++TEFSY I QSYD+ +LY+ HNCR Q
Sbjct: 145 LNYMLAKDTVASRLET--GISFTEFSYMILQSYDFLNLYQHHNCRLQ 189
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 63/163 (38%), Gaps = 55/163 (33%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI--FRNHEQYFWKDRKDSLKP 166
+GG T +GDPSGK +R TV T+ I+ + F N + P
Sbjct: 69 VGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVDN-----------P 117
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
+ NN W +++VI F+ I + F + ML K +V
Sbjct: 118 ATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLETGISFTEFSYMILQSYDF 177
Query: 204 -------------GGSDQMGNIKAGHDLI------SKLYGKTV 227
GGSDQ GNI AG +LI +K YG T+
Sbjct: 178 LNLYQHHNCRLQIGGSDQWGNITAGLELIRKSEEDAKAYGLTI 220
>sp|Q6HCM0|SYY1_BACHK Tyrosine--tRNA ligase 1 OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=tyrS1 PE=3 SV=1
Length = 418
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 37/167 (22%)
Query: 230 LLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW------- 282
LL + +Y GFDPTA SLHIG++L ++ L +Q AGHQ IAL+ + ++
Sbjct: 25 LLEKESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKA 84
Query: 283 -RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFR 314
RT N + V NN W +++VI F+ I + F
Sbjct: 85 ERTLNTKDTVAYYTESIKNQLSNFLEFENVENPATMANNYDWLGNLDVISFLRDIGKNFG 144
Query: 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ ML K +V +RLE+ G+++TEFSY I QSYD+ +LY+ HNCR Q
Sbjct: 145 LNYMLAKDTVASRLET--GISFTEFSYMILQSYDFLNLYQHHNCRLQ 189
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 49/151 (32%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI--FRNHEQYFWKDRKDSLKP 166
+GG T +GDPSGK +R TV T+ I+ + F N E P
Sbjct: 69 VGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVEN-----------P 117
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
+ NN W +++VI F+ I + F + ML K +V
Sbjct: 118 ATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLETGISFTEFSYMILQSYDF 177
Query: 204 -------------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI AG +LI K
Sbjct: 178 LNLYQHHNCRLQIGGSDQWGNITAGLELIRK 208
>sp|Q633D2|SYY1_BACCZ Tyrosine--tRNA ligase 1 OS=Bacillus cereus (strain ZK / E33L)
GN=tyrS1 PE=3 SV=1
Length = 418
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 37/167 (22%)
Query: 230 LLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW------- 282
LL + +Y GFDPTA SLHIG++L ++ L +Q AGHQ IAL+ + ++
Sbjct: 25 LLEKESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKA 84
Query: 283 -RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFR 314
RT N + V NN W +++VI F+ I + F
Sbjct: 85 ERTLNTKDTVAYYTESIKNQLSNFLEFENVENPATMANNYDWLGNLDVISFLRDIGKNFG 144
Query: 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ ML K +V +RLE+ G+++TEFSY I QSYD+ +LY+ HNCR Q
Sbjct: 145 LNYMLAKDTVASRLET--GISFTEFSYMILQSYDFLNLYQHHNCRLQ 189
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 49/151 (32%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI--FRNHEQYFWKDRKDSLKP 166
+GG T +GDPSGK +R TV T+ I+ + F N E P
Sbjct: 69 VGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVEN-----------P 117
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
+ NN W +++VI F+ I + F + ML K +V
Sbjct: 118 ATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLETGISFTEFSYMILQSYDF 177
Query: 204 -------------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI AG +LI K
Sbjct: 178 LNLYQHHNCRLQIGGSDQWGNITAGLELIRK 208
>sp|Q81KS9|SYY1_BACAN Tyrosine--tRNA ligase 1 OS=Bacillus anthracis GN=tyrS1 PE=3 SV=1
Length = 418
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 37/167 (22%)
Query: 230 LLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW------- 282
LL + +Y GFDPTA SLHIG++L ++ L +Q AGHQ IAL+ + ++
Sbjct: 25 LLEKESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKA 84
Query: 283 -RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFR 314
RT N + V NN W +++VI F+ I + F
Sbjct: 85 ERTLNTKDTVAYYTESIKNQLSNFLEFENVENPATMANNYDWLGNLDVISFLRDIGKNFG 144
Query: 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ ML K +V +RLE+ G+++TEFSY I QSYD+ +LY+ HNCR Q
Sbjct: 145 LNYMLAKDTVASRLET--GISFTEFSYMILQSYDFLNLYQHHNCRLQ 189
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 49/151 (32%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI--FRNHEQYFWKDRKDSLKP 166
+GG T +GDPSGK +R TV T+ I+ + F N E P
Sbjct: 69 VGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVEN-----------P 117
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
+ NN W +++VI F+ I + F + ML K +V
Sbjct: 118 ATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLETGISFTEFSYMILQSYDF 177
Query: 204 -------------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI AG +LI K
Sbjct: 178 LNLYQHHNCRLQIGGSDQWGNITAGLELIRK 208
>sp|B6EHW3|SYY_ALISL Tyrosine--tRNA ligase OS=Aliivibrio salmonicida (strain LFI1238)
GN=tyrS PE=3 SV=1
Length = 426
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 36/162 (22%)
Query: 236 QTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL-------------- 281
+T+Y GFDPTA SLHIG+L+ L+ L +Q+AGH+ +AL+ + ++
Sbjct: 35 RTLYCGFDPTADSLHIGSLVPLLVLKRFQQAGHKPLALVGGATGLIGDPSFKAAERQLNT 94
Query: 282 ------W---------------RTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLK 320
W + N VVNN+ W INVI+FM I + F + M++
Sbjct: 95 SDVVGDWVNKIRAQVSAFVDFNESKNGAEVVNNLDWIGEINVIEFMRDIGKHFSVNSMIQ 154
Query: 321 KQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
K+SV R++ E G+++TEFSY + QSYD+A L K C Q
Sbjct: 155 KESVKQRIDREGSGISFTEFSYMLLQSYDFAALNKAKECTLQ 196
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 63/161 (39%), Gaps = 48/161 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R Q NT + + R F D +S
Sbjct: 73 VGGATGLIGDPSFKAAER--------QLNTSDVVGDWVNKIRAQVSAF-VDFNESKNGAE 123
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
VVNN+ W INVI+FM I + F + M++K+SV
Sbjct: 124 VVNNLDWIGEINVIEFMRDIGKHFSVNSMIQKESVKQRIDREGSGISFTEFSYMLLQSYD 183
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GGSDQ GNI G DL ++ VF L
Sbjct: 184 FAALNKAKECTLQIGGSDQWGNITGGIDLTRRMNRNKVFGL 224
>sp|A7Z7R1|SYY_BACA2 Tyrosine--tRNA ligase OS=Bacillus amyloliquefaciens (strain FZB42)
GN=tyrS PE=3 SV=1
Length = 421
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 37/159 (23%)
Query: 238 VYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------RTCNEEA 289
+Y+GFDPTA SLHIG+LL ++ L +Q AGH IAL+ + ++ RT N +
Sbjct: 34 LYSGFDPTADSLHIGHLLPILTLRRFQLAGHHPIALVGGATGLIGDPSGKKAERTLNTQD 93
Query: 290 VV---------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKKQ 322
+V NN W +++I+F+ + + F + ML K
Sbjct: 94 IVVEWSQKIKNQLSRFLDFEAGENPAVIANNFDWIGKLSIIEFLRDVGKNFGINYMLAKD 153
Query: 323 SVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+V +R+E+ G++YTEFSY I QSYD+ +LY+E NC+ Q
Sbjct: 154 TVSSRIET--GISYTEFSYMILQSYDFLNLYREKNCKLQ 190
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 45/149 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R NT+ I +N F D + P +
Sbjct: 70 VGGATGLIGDPSGKKAER--------TLNTQDIVVEWSQKIKNQLSRFL-DFEAGENPAV 120
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W +++I+F+ + + F + ML K +V
Sbjct: 121 IANNFDWIGKLSIIEFLRDVGKNFGINYMLAKDTVSSRIETGISYTEFSYMILQSYDFLN 180
Query: 204 -----------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI AG +LI K
Sbjct: 181 LYREKNCKLQIGGSDQWGNITAGLELIRK 209
>sp|Q251G4|SYY_DESHY Tyrosine--tRNA ligase OS=Desulfitobacterium hafniense (strain Y51)
GN=tyrS PE=3 SV=1
Length = 420
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 37/165 (22%)
Query: 232 VRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------R 283
+ +P T+Y GFDPTA SLHIG+LL ++ L +Q AGH IAL+ + ++ R
Sbjct: 26 LESPMTLYCGFDPTADSLHIGHLLPVLMLRRFQLAGHCPIALVGGGTGLIGDPSGKTSER 85
Query: 284 TCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFRMG 316
T N VV NN W +INVI+F+ I + F +G
Sbjct: 86 TLNPTEVVQEWANRIKEQLSCFLDFEGVGNPAIMANNYEWLGTINVIEFLRDIGKNFSLG 145
Query: 317 DMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
ML K+SV +R+ G+++TEFSYQI QSYD+ L + + C Q
Sbjct: 146 SMLAKESVESRM--SRGISFTEFSYQILQSYDFLKLNELYGCEMQ 188
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 45/150 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GG T +GDPSGKT +R VQ I++ + D + P I
Sbjct: 68 VGGGTGLIGDPSGKTSERTLNPTEVVQEWANRIKEQLSCFL---------DFEGVGNPAI 118
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W +INVI+F+ I + F +G ML K+SV
Sbjct: 119 MANNYEWLGTINVIEFLRDIGKNFSLGSMLAKESVESRMSRGISFTEFSYQILQSYDFLK 178
Query: 204 -----------GGSDQMGNIKAGHDLISKL 222
GGSDQ GNI +G DLI ++
Sbjct: 179 LNELYGCEMQIGGSDQWGNITSGTDLIRRM 208
>sp|B8G0N6|SYY_DESHD Tyrosine--tRNA ligase OS=Desulfitobacterium hafniense (strain DCB-2
/ DSM 10664) GN=tyrS PE=3 SV=1
Length = 420
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 37/165 (22%)
Query: 232 VRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------R 283
+ +P T+Y GFDPTA SLHIG+LL ++ L +Q AGH IAL+ + ++ R
Sbjct: 26 LESPMTLYCGFDPTADSLHIGHLLPVLMLRRFQLAGHCPIALVGGGTGLIGDPSGKTSER 85
Query: 284 TCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFRMG 316
T N VV NN W +INVI+F+ I + F +G
Sbjct: 86 TLNPTEVVQEWANRIKEQLSCFLDFEGVGNPAIMANNYEWLGTINVIEFLRDIGKNFSLG 145
Query: 317 DMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
ML K+SV +R+ G+++TEFSYQI QSYD+ L + + C Q
Sbjct: 146 SMLAKESVESRM--SRGISFTEFSYQILQSYDFLKLNELYGCEMQ 188
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 45/150 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GG T +GDPSGKT +R VQ I++ + D + P I
Sbjct: 68 VGGGTGLIGDPSGKTSERTLNPTEVVQEWANRIKEQLSCFL---------DFEGVGNPAI 118
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W +INVI+F+ I + F +G ML K+SV
Sbjct: 119 MANNYEWLGTINVIEFLRDIGKNFSLGSMLAKESVESRMSRGISFTEFSYQILQSYDFLK 178
Query: 204 -----------GGSDQMGNIKAGHDLISKL 222
GGSDQ GNI +G DLI ++
Sbjct: 179 LNELYGCEMQIGGSDQWGNITSGTDLIRRM 208
>sp|Q823H9|SYY_CHLCV Tyrosine--tRNA ligase OS=Chlamydophila caviae (strain GPIC) GN=tyrS
PE=3 SV=1
Length = 412
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 29/159 (18%)
Query: 232 VRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------R 283
V +P + Y GFDPTA+SLHIG+ + + L G +AL+ + ++ R
Sbjct: 24 VESPISAYLGFDPTAASLHIGHWIGICFLRRMASFGITPVALVGSATGMIGDPSGKSIER 83
Query: 284 T---CNEEA------------------VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQ 322
T NE A +VNNM W+ VIDF+ + + FR+G ML K
Sbjct: 84 TLLESNEVAHNSKKLSECLSHYLPGVQIVNNMEWFQGTTVIDFLRDVGKHFRLGTMLGKD 143
Query: 323 SVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
++ R++SE G++YTEFSY + QSYD+AHL+++H Q
Sbjct: 144 TIKQRIQSEEGISYTEFSYILLQSYDFAHLFEKHGIALQ 182
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 59/151 (39%), Gaps = 53/151 (35%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+G AT +GDPSGK+ +R + V N+K + + + +
Sbjct: 66 VGSATGMIGDPSGKSIERTLLESNEVAHNSKKLSECLSHYLPGVQ--------------- 110
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNNM W+ VIDF+ + + FR+G ML K ++
Sbjct: 111 IVNNMEWFQGTTVIDFLRDVGKHFRLGTMLGKDTIKQRIQSEEGISYTEFSYILLQSYDF 170
Query: 204 -------------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI +G D I +
Sbjct: 171 AHLFEKHGIALQCGGSDQWGNITSGIDYIRR 201
>sp|A5UUZ9|SYY_ROSS1 Tyrosine--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=tyrS PE=3
SV=1
Length = 424
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 41/172 (23%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL--------------- 273
+LL R T+Y GFDP+A SLHIG+LL L+ L +QR GH IAL
Sbjct: 23 ELLTRERVTLYIGFDPSADSLHIGHLLPLLTLARFQRWGHTPIALAGGGTGLIGDPSGKT 82
Query: 274 ----MICLSQILWRTCNEEAV-------------------VNNMSWYNSINVIDFMNHIA 310
++ Q+ N EA+ +NN W ++++DF+ +
Sbjct: 83 QERPLLSKEQV---AANVEAIKGQLAQFLDFNAGDHSALLLNNADWLTRLSLMDFLRDVG 139
Query: 311 RLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362
+ + ML K SV +R+ SE G+++TEFSY + Q+YD+A+L++ + C+ QA
Sbjct: 140 KHLTVNYMLAKDSVRSRMTSETGISFTEFSYMLLQAYDFAYLFEHYGCKLQA 191
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 47/160 (29%)
Query: 110 GGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIV 169
GG T +GDPSGKT++R V N + I+ + D ++
Sbjct: 69 GGGTGLIGDPSGKTQERPLLSKEQVAANVEAIKGQLAQFL---------DFNAGDHSALL 119
Query: 170 VNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV-------------------------- 203
+NN W ++++DF+ + + + ML K SV
Sbjct: 120 LNNADWLTRLSLMDFLRDVGKHLTVNYMLAKDSVRSRMTSETGISFTEFSYMLLQAYDFA 179
Query: 204 ------------GGSDQMGNIKAGHDLISKLYGKTVFDLL 231
GGSDQ GNI AG +LI + G+ + L+
Sbjct: 180 YLFEHYGCKLQAGGSDQWGNITAGIELIRRTLGQKAYGLV 219
>sp|Q65G35|SYY1_BACLD Tyrosine--tRNA ligase 1 OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=tyrS1 PE=3 SV=2
Length = 421
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 37/168 (22%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW------ 282
+LL + ++Y+GFDPTA SLHIG+LL ++ L +Q AGH+ IAL+ + ++
Sbjct: 25 ELLDKEKISLYSGFDPTADSLHIGHLLPILMLRRFQLAGHRPIALVGGATGLIGDPSGKK 84
Query: 283 --RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLF 313
RT N E +V NN W +NVIDF+ + + F
Sbjct: 85 AERTLNNEEIVREWSQKIKNQLSRFLDFEAEENPAIMANNYDWIGKMNVIDFLRDVGKNF 144
Query: 314 RMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ ML K +V +R+E+ G++YTEFSY I QS D+ +LY+ C+ Q
Sbjct: 145 GINYMLAKDTVSSRIET--GISYTEFSYMILQSLDFLNLYRNQECKLQ 190
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 45/149 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R + V+ ++ I+ + D + P I
Sbjct: 70 VGGATGLIGDPSGKKAERTLNNEEIVREWSQKIKNQLSRFL---------DFEAEENPAI 120
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W +NVIDF+ + + F + ML K +V
Sbjct: 121 MANNYDWIGKMNVIDFLRDVGKNFGINYMLAKDTVSSRIETGISYTEFSYMILQSLDFLN 180
Query: 204 -----------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI +G +LI K
Sbjct: 181 LYRNQECKLQIGGSDQWGNITSGLELIRK 209
>sp|A7NK64|SYY_ROSCS Tyrosine--tRNA ligase OS=Roseiflexus castenholzii (strain DSM 13941
/ HLO8) GN=tyrS PE=3 SV=1
Length = 424
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 41/172 (23%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL--------------- 273
DLL R T+Y GFDP+A SLHIG+LL L+ L +QR GH IAL
Sbjct: 23 DLLERERVTLYIGFDPSADSLHIGHLLPLLTLARFQRWGHTPIALAGGGTGLIGDPSGKT 82
Query: 274 ----MICLSQILWRTCNEEAV-------------------VNNMSWYNSINVIDFMNHIA 310
++ Q+ N EA+ +NN W ++++DF+ +
Sbjct: 83 QERPLLSKEQV---AANVEAIKRQLAQFLDFNAGDHSAMLLNNAEWLTRLSLMDFLRDVG 139
Query: 311 RLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362
+ + ML K SV +R+ SE G+++TEFSY + Q+YD+A+L++ + C+ QA
Sbjct: 140 KHLTVNYMLAKDSVRSRMMSETGISFTEFSYMLLQAYDFAYLFEHYGCKLQA 191
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 47/160 (29%)
Query: 110 GGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIV 169
GG T +GDPSGKT++R V N + I++ + D ++
Sbjct: 69 GGGTGLIGDPSGKTQERPLLSKEQVAANVEAIKRQLAQFL---------DFNAGDHSAML 119
Query: 170 VNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV-------------------------- 203
+NN W ++++DF+ + + + ML K SV
Sbjct: 120 LNNAEWLTRLSLMDFLRDVGKHLTVNYMLAKDSVRSRMMSETGISFTEFSYMLLQAYDFA 179
Query: 204 ------------GGSDQMGNIKAGHDLISKLYGKTVFDLL 231
GGSDQ GNI AG +LI + G+ + L+
Sbjct: 180 YLFEHYGCKLQAGGSDQWGNITAGIELIRRTSGQKAYGLV 219
>sp|Q829F2|SYY_STRAW Tyrosine--tRNA ligase OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=tyrS PE=3 SV=1
Length = 422
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 33/160 (20%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------RTCNE 287
P T Y GFDPTA SLH+GNL+ ++ + Q+AG++ + L+ + ++ RT N
Sbjct: 31 PVTFYCGFDPTAPSLHLGNLVQILTMRRIQQAGNRPLGLVGGATGLIGDPKPNSERTLNS 90
Query: 288 EAVV--------------------------NNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
VV NN+ W ++ I+F+ + + FR+ M+ K
Sbjct: 91 REVVAEWVERLRAQIAPLLDFEGPNAAIMVNNLDWTQGLSAIEFLRDVGKYFRVNKMIAK 150
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
++V RL S+ G++YTEFSYQI Q D+ LY+ + C Q
Sbjct: 151 EAVSRRLNSDAGISYTEFSYQILQGMDFLELYRRYGCTLQ 190
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 49/153 (32%)
Query: 107 GKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKP 166
G +GGAT +GDP K ++ L + + + +E R Q +
Sbjct: 68 GLVGGATGLIGDP----KPNSERTLNSREVVAEWVE-------RLRAQIAPLLDFEGPNA 116
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
I+VNN+ W ++ I+F+ + + FR+ M+ K++V
Sbjct: 117 AIMVNNLDWTQGLSAIEFLRDVGKYFRVNKMIAKEAVSRRLNSDAGISYTEFSYQILQGM 176
Query: 204 ---------------GGSDQMGNIKAGHDLISK 221
GGSDQ GN+ +G DLI +
Sbjct: 177 DFLELYRRYGCTLQTGGSDQWGNLTSGTDLIHR 209
>sp|B5FFR9|SYY_VIBFM Tyrosine--tRNA ligase OS=Vibrio fischeri (strain MJ11) GN=tyrS PE=3
SV=1
Length = 426
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 36/162 (22%)
Query: 236 QTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL-------------- 281
+T+Y GFDPTA SLHIG+L+ L+ L +Q+AGH+ +AL+ + ++
Sbjct: 35 RTLYCGFDPTADSLHIGSLVPLLVLKRFQQAGHKPLALVGGATGLIGDPSFKAAERQLNT 94
Query: 282 ------W---------------RTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLK 320
W N VVNN+ W INVI+FM + + F + M++
Sbjct: 95 NEVVGDWVNKIKAQVSAFVDFTEEKNGAEVVNNLDWIGQINVIEFMRDVGKHFSVNAMIQ 154
Query: 321 KQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
K+SV R++ E G+++TEFSY + QSYD+A L K C Q
Sbjct: 155 KESVKQRIDREGSGISFTEFSYMLLQSYDFAALNKAKECTLQ 196
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 48/161 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R Q NT + + + F D +
Sbjct: 73 VGGATGLIGDPSFKAAER--------QLNTNEVVGDWVNKIKAQVSAF-VDFTEEKNGAE 123
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
VVNN+ W INVI+FM + + F + M++K+SV
Sbjct: 124 VVNNLDWIGQINVIEFMRDVGKHFSVNAMIQKESVKQRIDREGSGISFTEFSYMLLQSYD 183
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GGSDQ GNI G DL ++ VF L
Sbjct: 184 FAALNKAKECTLQIGGSDQWGNITGGIDLTRRMNRNKVFGL 224
>sp|Q5E424|SYY_VIBF1 Tyrosine--tRNA ligase OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=tyrS PE=3 SV=1
Length = 426
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 36/162 (22%)
Query: 236 QTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL-------------- 281
+T+Y GFDPTA SLHIG+L+ L+ L +Q+AGH+ +AL+ + ++
Sbjct: 35 RTLYCGFDPTADSLHIGSLVPLLVLKRFQQAGHKPLALVGGATGLIGDPSFKAAERQLNT 94
Query: 282 ------W---------------RTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLK 320
W N VVNN+ W INVI+FM + + F + M++
Sbjct: 95 NEVVGDWVNKIKAQVSAFVDFTEEKNGAEVVNNLDWIGQINVIEFMRDVGKHFSVNAMIQ 154
Query: 321 KQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
K+SV R++ E G+++TEFSY + QSYD+A L K C Q
Sbjct: 155 KESVKQRIDREGSGISFTEFSYMLLQSYDFAALNKAKECTLQ 196
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 48/161 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R Q NT + + + F D +
Sbjct: 73 VGGATGLIGDPSFKAAER--------QLNTNEVVGDWVNKIKAQVSAF-VDFTEEKNGAE 123
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
VVNN+ W INVI+FM + + F + M++K+SV
Sbjct: 124 VVNNLDWIGQINVIEFMRDVGKHFSVNAMIQKESVKQRIDREGSGISFTEFSYMLLQSYD 183
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GGSDQ GNI G DL ++ VF L
Sbjct: 184 FAALNKAKECTLQIGGSDQWGNITGGIDLTRRMNRNKVFGL 224
>sp|A6GW04|SYY_FLAPJ Tyrosine--tRNA ligase OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=tyrS PE=3 SV=1
Length = 431
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 82/168 (48%), Gaps = 37/168 (22%)
Query: 231 LVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALM---------------- 274
L + T Y GFDPTA SLHIG+++ +I L+H + GH+ IAL+
Sbjct: 25 LTKESTTAYIGFDPTADSLHIGSMVQIILLVHLKNFGHKPIALIGGATGMIGDPSGKSDE 84
Query: 275 -----------------ICLSQIL-WRTCNEEA--VVNNMSWYNSINVIDFMNHIARLFR 314
LS L + T N A +VNN W + IDF I +
Sbjct: 85 RNLLDEATLNKNVAGIKAVLSSFLDFNTTNANAPILVNNYDWMKDFSFIDFARDIGKRIT 144
Query: 315 MGDMLKKQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ M+ K SV RL +E GM++TEF+YQ+ Q YD+ +LYK HNC Q
Sbjct: 145 VNYMMSKDSVKKRLGAEGEGMSFTEFTYQLIQGYDFQYLYKNHNCLLQ 192
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 47/166 (28%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
IGGAT +GDPSGK+ +R+ D AT+ N GI+ + + F + PI
Sbjct: 68 IGGATGMIGDPSGKSDERNLLDEATLNKNVAGIKAVLSS--------FLDFNTTNANAPI 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN W + IDF I + + M+ K SV
Sbjct: 120 LVNNYDWMKDFSFIDFARDIGKRITVNYMMSKDSVKKRLGAEGEGMSFTEFTYQLIQGYD 179
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDLLVRTP 235
GGSDQ GNI G +L+ ++ G+ + TP
Sbjct: 180 FQYLYKNHNCLLQMGGSDQWGNITTGTELVRRMGGEGAKAYALTTP 225
>sp|O84065|SYY_CHLTR Tyrosine--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=tyrS PE=3 SV=1
Length = 412
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 29/157 (18%)
Query: 234 TPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------RTC 285
P + Y GFDPTA SLHIG+ + + L G +AL+ + ++ R+
Sbjct: 26 VPVSAYLGFDPTAPSLHIGHWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSL 85
Query: 286 NEEA---------------------VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV 324
++A +VNN W S++++DF+ + + FR+G ML K V
Sbjct: 86 LDQAQVLDNSKKIAAALASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVV 145
Query: 325 VTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
R+ SE G++YTEFSY + QSYD+AHL+KEHN Q
Sbjct: 146 KQRVYSEEGISYTEFSYLLLQSYDFAHLFKEHNVVLQ 182
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 55/152 (36%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK+ +R D A V N+K I + + P I
Sbjct: 66 VGGATGMIGDPSGKSVERSLLDQAQVLDNSKKIAAALASYL----------------PGI 109
Query: 169 -VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------ 203
+VNN W S++++DF+ + + FR+G ML K V
Sbjct: 110 RIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEFSYLLLQSYD 169
Query: 204 --------------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI +G D I +
Sbjct: 170 FAHLFKEHNVVLQCGGSDQWGNITSGIDYIRR 201
>sp|B0BB49|SYY_CHLTB Tyrosine--tRNA ligase OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=tyrS PE=3 SV=1
Length = 412
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 29/157 (18%)
Query: 234 TPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------RTC 285
P + Y GFDPTA SLHIG+ + + L G +AL+ + ++ R+
Sbjct: 26 VPVSAYLGFDPTAPSLHIGHWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSL 85
Query: 286 NEEA---------------------VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV 324
++A +VNN W S++++DF+ + + FR+G ML K V
Sbjct: 86 LDQAQVLDNSKKIAAALASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVV 145
Query: 325 VTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
R+ SE G++YTEFSY + QSYD+AHL+KEHN Q
Sbjct: 146 KQRVYSEEGISYTEFSYLLLQSYDFAHLFKEHNVVLQ 182
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 55/152 (36%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK+ +R D A V N+K I + + P I
Sbjct: 66 VGGATGMIGDPSGKSVERSLLDQAQVLDNSKKIAAALASYL----------------PGI 109
Query: 169 -VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------ 203
+VNN W S++++DF+ + + FR+G ML K V
Sbjct: 110 RIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEFSYLLLQSYD 169
Query: 204 --------------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI +G D I +
Sbjct: 170 FAHLFKEHNVVLQCGGSDQWGNITSGIDYIRR 201
>sp|Q3KMV9|SYY_CHLTA Tyrosine--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=tyrS PE=3 SV=1
Length = 412
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 29/157 (18%)
Query: 234 TPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------RTC 285
P + Y GFDPTA SLHIG+ + + L G +AL+ + ++ R+
Sbjct: 26 VPVSAYLGFDPTAPSLHIGHWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSL 85
Query: 286 NEEA---------------------VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV 324
++A +VNN W S++++DF+ + + FR+G ML K V
Sbjct: 86 LDQAQVLDNSKKIAAALASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVV 145
Query: 325 VTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
R+ SE G++YTEFSY + QSYD+AHL+KEHN Q
Sbjct: 146 KQRVYSEEGISYTEFSYLLLQSYDFAHLFKEHNVVLQ 182
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 55/152 (36%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK+ +R D A V N+K I + + P I
Sbjct: 66 VGGATGMIGDPSGKSVERSLLDQAQVLDNSKKIAAALASYL----------------PGI 109
Query: 169 -VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------ 203
+VNN W S++++DF+ + + FR+G ML K V
Sbjct: 110 RIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEFSYLLLQSYD 169
Query: 204 --------------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI +G D I +
Sbjct: 170 FAHLFKEHNVVLQCGGSDQWGNITSGIDYIRR 201
>sp|B0B9H0|SYY_CHLT2 Tyrosine--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=tyrS PE=3 SV=1
Length = 412
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 29/157 (18%)
Query: 234 TPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------RTC 285
P + Y GFDPTA SLHIG+ + + L G +AL+ + ++ R+
Sbjct: 26 VPVSAYLGFDPTAPSLHIGHWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSL 85
Query: 286 NEEA---------------------VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV 324
++A +VNN W S++++DF+ + + FR+G ML K V
Sbjct: 86 LDQAQVLDNSKKIAAALASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVV 145
Query: 325 VTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
R+ SE G++YTEFSY + QSYD+AHL+KEHN Q
Sbjct: 146 KQRVYSEEGISYTEFSYLLLQSYDFAHLFKEHNVVLQ 182
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 55/152 (36%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK+ +R D A V N+K I + + P I
Sbjct: 66 VGGATGMIGDPSGKSVERSLLDQAQVLDNSKKIAAALASYL----------------PGI 109
Query: 169 -VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------ 203
+VNN W S++++DF+ + + FR+G ML K V
Sbjct: 110 RIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEFSYLLLQSYD 169
Query: 204 --------------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI +G D I +
Sbjct: 170 FAHLFKEHNVVLQCGGSDQWGNITSGIDYIRR 201
>sp|Q7VR52|SYY_BLOFL Tyrosine--tRNA ligase OS=Blochmannia floridanus GN=tyrS PE=3 SV=1
Length = 422
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 37/169 (21%)
Query: 230 LLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALM--------------- 274
+L P T+Y GFDPTA SLHIG+L L+ L +Q+AGH+ + L+
Sbjct: 27 VLNSQPITLYCGFDPTADSLHIGHLAPLLCLKRFQKAGHRPLILLGGATGLIGDPSFKDS 86
Query: 275 ----------------ICLSQILWRTCN-----EEAVVNNMSWYNSINVIDFMNHIARLF 313
I L L+ CN + +++N SW++S+N++ F+ I + F
Sbjct: 87 ERKLQSFNTTQKWIKKIKLQIALFIDCNSNNASQAHIIDNYSWFSSMNILTFLRDIGKFF 146
Query: 314 RMGDMLKKQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ M+ K + RL+++ +G++YTEFSY + QSYD+AH+YK ++ Q
Sbjct: 147 SINKMINKDIIKKRLKNDNYGISYTEFSYNLMQSYDFAHIYKHYDAILQ 195
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 47/163 (28%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R Q T Q K I+ I F ++
Sbjct: 71 LGGATGLIGDPSFKDSERKLQSFNTTQKWIKKIKLQIAL--------FIDCNSNNASQAH 122
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQ--------------------------- 201
+++N SW++S+N++ F+ I + F + M+ K
Sbjct: 123 IIDNYSWFSSMNILTFLRDIGKFFSINKMINKDIIKKRLKNDNYGISYTEFSYNLMQSYD 182
Query: 202 ------------SVGGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
+GGSDQ GNI +G DLI ++Y K + L V
Sbjct: 183 FAHIYKHYDAILQIGGSDQWGNIISGIDLIKRMYKKNAYGLTV 225
>sp|Q9Y2Z4|SYYM_HUMAN Tyrosine--tRNA ligase, mitochondrial OS=Homo sapiens GN=YARS2 PE=1
SV=2
Length = 477
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 42/169 (24%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW----RTCNEEA- 289
PQT+Y GFDPTA SLH+G+LL L+ L H QRAGH VIAL+ + L RT EA
Sbjct: 73 PQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREAL 132
Query: 290 -------------------------------------VVNNMSWYNSINVIDFMNHIARL 312
V++N +WY +++DF+ +
Sbjct: 133 ETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGH 192
Query: 313 FRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
FRMG +L +QSV RL+S GM+ EF YQ+ Q+YD+ +L++ + CR Q
Sbjct: 193 FRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQ 241
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 40/162 (24%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGATA++GDPSG+TK+R+ + V+ N + + ++ + NH+Q F R S
Sbjct: 112 VGGATARLGDPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGR--SWGSFT 169
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V++N +WY +++DF+ + FRMG +L +QSV
Sbjct: 170 VLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDF 229
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GGSDQ+GNI +G++ I+KL G+ VF + V
Sbjct: 230 YYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITV 271
>sp|Q2LR98|SYY_SYNAS Tyrosine--tRNA ligase OS=Syntrophus aciditrophicus (strain SB)
GN=tyrS PE=3 SV=1
Length = 428
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 81/163 (49%), Gaps = 35/163 (21%)
Query: 232 VRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALM-------------ICLS 278
+ P Y GFDPTA SLHIG+L+ ++ LIH QR GH IAL+ +
Sbjct: 29 LEAPLACYIGFDPTARSLHIGSLVPIMALIHLQRHGHTSIALVGGGTALIGDPSGKTEMR 88
Query: 279 QILWR-------TC-------------NEEAVVNNMSWYNSINVIDFMNHIARLFRMGDM 318
QIL R TC + ++NN W +N I F+ I R F + M
Sbjct: 89 QILTREKIELNATCMRRQFARYLSFEDKKAMMINNADWLTKLNYISFLRDIGRHFSVNKM 148
Query: 319 LKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
L +S RLE G+N+ EF+Y + Q+YD+ +L++ HNC Q
Sbjct: 149 LAAESYKMRLEK--GLNFIEFNYMLLQAYDFLYLFQNHNCVMQ 189
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 49/156 (31%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYF-WKDRKDSLKPP 167
+GG TA +GDPSGKT+ R + T K IE N + R +Y ++D+K
Sbjct: 71 VGGGTALIGDPSGKTEMRQ------ILTREK-IELNATCMRRQFARYLSFEDKK-----A 118
Query: 168 IVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQS------------------------- 202
+++NN W +N I F+ I R F + ML +S
Sbjct: 119 MMINNADWLTKLNYISFLRDIGRHFSVNKMLAAESYKMRLEKGLNFIEFNYMLLQAYDFL 178
Query: 203 -----------VGGSDQMGNIKAGHDLISKLYGKTV 227
+GG+DQ GN+ AG DLI ++ GK
Sbjct: 179 YLFQNHNCVMQMGGNDQWGNMLAGVDLIRRVEGKVA 214
>sp|Q11UV9|SYY_CYTH3 Tyrosine--tRNA ligase OS=Cytophaga hutchinsonii (strain ATCC 33406
/ NCIMB 9469) GN=tyrS PE=3 SV=1
Length = 427
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 84/168 (50%), Gaps = 37/168 (22%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MIC------ 276
+ L++ T Y GFDPTASSL IGNL+ ++ L+H+Q AGH +AL MI
Sbjct: 23 EYLLKNQTTAYVGFDPTASSLTIGNLVTIMMLVHFQHAGHIPMALVGGATGMIGDPSGRS 82
Query: 277 ---------------------LSQILWRTC--NEEAVVNNMSWYNSINVIDFMNHIARLF 313
L++ L C N +VNN W+ I ++F+ +
Sbjct: 83 EERNFLSEETLRLNQEGIRKQLTKFLDFDCGANSAKLVNNYDWFKGIGFLEFLRDAGKHL 142
Query: 314 RMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ M+ K SV RLE G+ +TEFSYQ+ Q YD+ HLY++ N R Q
Sbjct: 143 TVNYMMAKDSVKKRLEV--GLTFTEFSYQLLQGYDFCHLYQKENVRLQ 188
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 45/158 (28%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSG++++R+ T++ N +GI K + D
Sbjct: 68 VGGATGMIGDPSGRSEERNFLSEETLRLNQEGIRKQLTKFL---------DFDCGANSAK 118
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN W+ I ++F+ + + M+ K SV
Sbjct: 119 LVNNYDWFKGIGFLEFLRDAGKHLTVNYMMAKDSVKKRLEVGLTFTEFSYQLLQGYDFCH 178
Query: 204 -----------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GGSDQ GNI +G +LI ++ T F L
Sbjct: 179 LYQKENVRLQMGGSDQWGNITSGTELIRRMADGTAFAL 216
>sp|Q47N93|SYY_THEFY Tyrosine--tRNA ligase OS=Thermobifida fusca (strain YX) GN=tyrS
PE=3 SV=2
Length = 432
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 40/170 (23%)
Query: 231 LVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------R 283
L P T+Y GFDPTA SLH+G+L + L +QRAGH+ IAL+ + ++ R
Sbjct: 27 LADGPVTLYCGFDPTAGSLHVGHLTQALTLARFQRAGHRPIALVGGATGMIGDPKPNAER 86
Query: 284 TCNEEAVV--------------------------------NNMSWYNSINVIDFMNHIAR 311
T N + +N W + I + I +
Sbjct: 87 TLNSPETIRQWVGNLKRQLSSFLEFTPEGAEPKPTDALLLDNAEWLGKLTAIGLLRDIGK 146
Query: 312 LFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
F + ML +++V TRLE GM+YTEFSY + QSYD+ LY+ H C Q
Sbjct: 147 HFSINQMLARETVKTRLEGA-GMSYTEFSYVLLQSYDYVELYRRHGCTLQ 195
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 42/153 (27%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDP +R T++ +++ + + + D+L
Sbjct: 70 VGGATGMIGDPK-PNAERTLNSPETIRQWVGNLKRQLSSFLEFTPEGAEPKPTDAL---- 124
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+++N W + I + I + F + ML +++V
Sbjct: 125 LLDNAEWLGKLTAIGLLRDIGKHFSINQMLARETVKTRLEGAGMSYTEFSYVLLQSYDYV 184
Query: 204 ------------GGSDQMGNIKAGHDLISKLYG 224
GGSDQ GNI AG DLI ++ G
Sbjct: 185 ELYRRHGCTLQIGGSDQWGNITAGLDLIRRMEG 217
>sp|Q47B76|SYY_DECAR Tyrosine--tRNA ligase OS=Dechloromonas aromatica (strain RCB)
GN=tyrS PE=3 SV=1
Length = 424
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 38/184 (20%)
Query: 216 HD--LISKLYGKTVFD-LLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIA 272
HD LI+++ D LL T+Y GFDPTA SLH+G+L+ ++ L +Q AGH+ IA
Sbjct: 11 HDRGLIAQITDAAALDKLLTEESVTLYCGFDPTADSLHLGHLVPVLILKRFQEAGHKPIA 70
Query: 273 LMICLSQIL----------------------------------WRTCNEEAVVNNMSWYN 298
L+ + ++ + N + NN W+
Sbjct: 71 LVGGATGMIGDPSFKATERKLNTPDVIASWVGKIRGQVEPFLKFDGANAAIMANNYDWFG 130
Query: 299 SINVIDFMNHIARLFRMGDMLKKQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHN 357
+N ++FM I + F + M+KK+SV RL E G++YTEFSY + Q YD+A L K +
Sbjct: 131 GMNCLEFMRDIGKHFSVNAMIKKESVQQRLTREDQGISYTEFSYSLLQGYDFAELNKRYG 190
Query: 358 CRFQ 361
C Q
Sbjct: 191 CVLQ 194
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 65/161 (40%), Gaps = 49/161 (30%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R + NT + + R + F K D I
Sbjct: 72 VGGATGMIGDPSFKATER--------KLNTPDVIASWVGKIRGQVEPFLK--FDGANAAI 121
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W+ +N ++FM I + F + M+KK+SV
Sbjct: 122 MANNYDWFGGMNCLEFMRDIGKHFSVNAMIKKESVQQRLTREDQGISYTEFSYSLLQGYD 181
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GGSDQ GNI AG DL +L+ K VF L
Sbjct: 182 FAELNKRYGCVLQIGGSDQWGNIVAGTDLTRRLHQKHVFGL 222
>sp|Q817A2|SYY1_BACCR Tyrosine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=tyrS1 PE=3 SV=1
Length = 418
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 37/167 (22%)
Query: 230 LLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW------- 282
LL + +Y GFDPTA SLHIG++ ++ L +Q AGHQ IAL+ + ++
Sbjct: 25 LLEKESVKLYCGFDPTADSLHIGHMYPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKA 84
Query: 283 -RTCNEEAVV---------------------------NNMSWYNSINVIDFMNHIARLFR 314
RT N + V NN W +++VI F+ I + F
Sbjct: 85 ERTLNTKDTVAYYTESIKNQLSNFLEFENVDNPATMANNYDWLGNLDVISFLRDIGKNFG 144
Query: 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ ML K +V +RLE+ G+++TEFSY I QSYD+ +LY+ H CR Q
Sbjct: 145 LNYMLAKDTVASRLET--GISFTEFSYMILQSYDFLNLYQHHKCRLQ 189
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 58/151 (38%), Gaps = 49/151 (32%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI--FRNHEQYFWKDRKDSLKP 166
+GG T +GDPSGK +R TV T+ I+ + F N + P
Sbjct: 69 VGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENVDN-----------P 117
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
+ NN W +++VI F+ I + F + ML K +V
Sbjct: 118 ATMANNYDWLGNLDVISFLRDIGKNFGLNYMLAKDTVASRLETGISFTEFSYMILQSYDF 177
Query: 204 -------------GGSDQMGNIKAGHDLISK 221
GGSDQ GNI AG +LI K
Sbjct: 178 LNLYQHHKCRLQIGGSDQWGNITAGLELIRK 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,761,373
Number of Sequences: 539616
Number of extensions: 5156174
Number of successful extensions: 13761
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 11332
Number of HSP's gapped (non-prelim): 1771
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)