Query psy14958
Match_columns 362
No_of_seqs 378 out of 2036
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 16:49:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0162 TyrS Tyrosyl-tRNA synt 100.0 3.5E-43 7.7E-48 352.6 11.7 190 44-279 31-277 (401)
2 KOG2623|consensus 100.0 1E-42 2.2E-47 343.8 11.8 233 8-277 27-324 (467)
3 KOG2623|consensus 100.0 3.4E-38 7.4E-43 311.7 11.1 183 170-362 1-232 (467)
4 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1E-37 2.2E-42 313.3 11.0 146 208-355 6-182 (401)
5 PRK13354 tyrosyl-tRNA syntheta 100.0 1E-37 2.2E-42 314.7 11.0 191 40-275 28-279 (410)
6 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 1.7E-34 3.6E-39 288.6 10.1 198 28-271 12-263 (377)
7 PRK05912 tyrosyl-tRNA syntheta 100.0 5.8E-34 1.3E-38 287.2 12.7 181 43-268 31-274 (408)
8 PRK13354 tyrosyl-tRNA syntheta 100.0 1.3E-32 2.8E-37 277.6 10.0 148 214-362 12-191 (410)
9 PRK05912 tyrosyl-tRNA syntheta 100.0 9.1E-32 2E-36 271.3 10.7 154 208-362 6-193 (408)
10 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 2.3E-30 4.9E-35 258.9 10.6 139 212-355 9-179 (377)
11 cd00395 Tyr_Trp_RS_core cataly 99.9 5.5E-28 1.2E-32 232.3 11.4 124 237-362 1-158 (273)
12 cd00395 Tyr_Trp_RS_core cataly 99.9 4E-27 8.7E-32 226.3 9.4 169 47-257 1-226 (273)
13 cd00805 TyrRS_core catalytic c 99.9 1.6E-25 3.6E-30 214.4 11.8 162 46-249 1-215 (269)
14 cd00805 TyrRS_core catalytic c 99.9 5.7E-25 1.2E-29 210.6 11.2 118 236-354 1-152 (269)
15 PF00579 tRNA-synt_1b: tRNA sy 99.9 6.8E-24 1.5E-28 203.9 9.0 122 233-355 3-151 (292)
16 PLN02486 aminoacyl-tRNA ligase 99.9 1.5E-21 3.2E-26 196.0 10.9 177 178-361 15-224 (383)
17 PRK08560 tyrosyl-tRNA syntheta 99.8 3.5E-21 7.7E-26 189.5 9.9 142 207-353 3-168 (329)
18 PTZ00126 tyrosyl-tRNA syntheta 99.8 5.4E-20 1.2E-24 184.8 8.0 145 207-355 39-212 (383)
19 PF00579 tRNA-synt_1b: tRNA sy 99.8 1.6E-20 3.5E-25 180.6 1.0 136 42-225 2-176 (292)
20 PTZ00126 tyrosyl-tRNA syntheta 99.7 2.2E-17 4.8E-22 166.0 12.0 200 7-257 23-283 (383)
21 PTZ00348 tyrosyl-tRNA syntheta 99.7 1.2E-16 2.6E-21 170.3 16.9 176 20-249 4-241 (682)
22 PRK12285 tryptophanyl-tRNA syn 99.7 5.2E-17 1.1E-21 162.6 11.6 162 178-354 14-198 (368)
23 cd00806 TrpRS_core catalytic c 99.7 9.5E-17 2.1E-21 155.0 9.9 114 237-354 1-138 (280)
24 PRK08560 tyrosyl-tRNA syntheta 99.7 2.2E-16 4.7E-21 155.7 10.2 170 30-256 18-239 (329)
25 TIGR00233 trpS tryptophanyl-tR 99.6 3.7E-15 8E-20 147.1 8.5 116 234-354 1-140 (328)
26 PTZ00348 tyrosyl-tRNA syntheta 99.6 3.9E-15 8.5E-20 158.8 8.4 144 207-355 5-177 (682)
27 PRK00927 tryptophanyl-tRNA syn 99.5 1.4E-14 3E-19 143.2 9.3 113 236-353 2-138 (333)
28 PLN02486 aminoacyl-tRNA ligase 99.5 5.1E-14 1.1E-18 141.8 8.4 166 33-255 61-289 (383)
29 PRK12282 tryptophanyl-tRNA syn 99.4 3.1E-13 6.7E-18 133.9 8.8 114 236-354 3-143 (333)
30 KOG2145|consensus 99.3 1.4E-12 3.1E-17 126.6 6.9 165 178-349 27-217 (397)
31 PRK12556 tryptophanyl-tRNA syn 99.1 1.9E-10 4.1E-15 114.2 10.1 115 236-354 4-150 (332)
32 KOG2144|consensus 99.1 5.1E-11 1.1E-15 115.8 5.5 141 208-355 9-179 (360)
33 cd00806 TrpRS_core catalytic c 99.1 1.9E-10 4.2E-15 111.3 8.9 122 47-223 1-162 (280)
34 PLN02886 aminoacyl-tRNA ligase 99.1 2.6E-10 5.7E-15 115.3 10.1 114 236-354 47-185 (389)
35 PRK12285 tryptophanyl-tRNA syn 99.1 2.9E-10 6.3E-15 114.3 10.1 165 35-256 56-276 (368)
36 PRK12284 tryptophanyl-tRNA syn 99.0 6.7E-10 1.4E-14 113.5 8.6 118 235-354 2-149 (431)
37 PRK00927 tryptophanyl-tRNA syn 98.9 1.6E-09 3.4E-14 107.4 6.9 155 47-257 3-221 (333)
38 PRK12283 tryptophanyl-tRNA syn 98.9 9.8E-09 2.1E-13 104.2 10.4 113 236-353 3-142 (398)
39 COG0180 TrpS Tryptophanyl-tRNA 98.7 1E-07 2.3E-12 94.1 9.8 115 234-352 4-144 (314)
40 TIGR00233 trpS tryptophanyl-tR 98.6 1.9E-07 4.1E-12 92.7 9.3 157 44-256 1-217 (328)
41 PRK12282 tryptophanyl-tRNA syn 98.1 7.4E-06 1.6E-10 81.7 7.6 155 46-257 3-221 (333)
42 KOG2713|consensus 97.6 0.00015 3.3E-09 71.2 6.9 117 234-354 12-156 (347)
43 PRK12556 tryptophanyl-tRNA syn 96.7 0.0022 4.8E-08 64.1 5.2 54 203-257 154-227 (332)
44 cd00802 class_I_aaRS_core cata 96.4 0.0061 1.3E-07 52.7 5.5 37 238-275 2-42 (143)
45 cd00802 class_I_aaRS_core cata 95.1 0.027 5.8E-07 48.7 4.0 111 48-222 2-117 (143)
46 PRK12284 tryptophanyl-tRNA syn 94.8 0.09 2E-06 54.6 7.8 161 45-257 2-227 (431)
47 TIGR00467 lysS_arch lysyl-tRNA 79.0 7 0.00015 41.7 7.8 75 235-310 19-142 (515)
48 cd00671 ArgRS_core catalytic c 68.5 5.8 0.00013 36.8 3.7 35 239-274 6-44 (212)
49 PRK00260 cysS cysteinyl-tRNA s 60.9 10 0.00023 39.6 4.2 42 233-275 21-67 (463)
50 PRK01611 argS arginyl-tRNA syn 58.0 11 0.00024 39.7 3.9 35 239-274 117-155 (507)
51 PRK12283 tryptophanyl-tRNA syn 55.3 52 0.0011 34.3 8.1 79 45-175 2-85 (398)
52 cd00674 LysRS_core_class_I cat 48.6 19 0.00041 36.7 3.6 36 240-276 25-64 (353)
53 cd00672 CysRS_core catalytic c 48.2 28 0.0006 32.8 4.5 43 233-276 18-65 (213)
54 PF09334 tRNA-synt_1g: tRNA sy 46.1 23 0.0005 36.2 3.9 32 244-276 10-45 (391)
55 COG1384 LysS Lysyl-tRNA synthe 44.3 98 0.0021 33.4 8.2 100 235-343 20-170 (521)
56 cd00668 Ile_Leu_Val_MetRS_core 42.0 19 0.00041 35.1 2.5 29 248-276 14-46 (312)
57 PF11090 DUF2833: Protein of u 42.0 21 0.00045 29.6 2.3 71 105-192 10-81 (86)
58 PLN02886 aminoacyl-tRNA ligase 42.0 70 0.0015 33.2 6.6 75 46-174 47-127 (389)
59 cd00808 GluRS_core catalytic c 40.7 36 0.00079 32.8 4.1 34 243-277 9-43 (239)
60 PF00750 tRNA-synt_1d: tRNA sy 40.5 29 0.00063 34.9 3.6 37 239-276 26-68 (354)
61 TIGR00456 argS arginyl-tRNA sy 39.5 32 0.00069 36.9 3.8 38 239-277 118-161 (566)
62 COG0018 ArgS Arginyl-tRNA synt 38.8 34 0.00073 37.2 3.9 36 241-277 125-166 (577)
63 cd00817 ValRS_core catalytic c 38.3 24 0.00052 35.8 2.6 29 248-276 15-47 (382)
64 PLN02286 arginine-tRNA ligase 38.2 29 0.00063 37.4 3.3 36 241-277 125-166 (576)
65 PRK00750 lysK lysyl-tRNA synth 37.4 31 0.00066 36.7 3.3 35 240-275 29-67 (510)
66 TIGR00398 metG methionyl-tRNA 36.2 33 0.00072 36.1 3.3 32 244-276 10-45 (530)
67 cd00814 MetRS_core catalytic c 35.6 30 0.00065 34.0 2.7 29 248-276 14-46 (319)
68 PRK12451 arginyl-tRNA syntheta 33.7 42 0.00092 36.0 3.6 37 240-277 120-162 (562)
69 PRK11893 methionyl-tRNA synthe 33.2 49 0.0011 34.4 4.0 29 248-276 15-47 (511)
70 PF13480 Acetyltransf_6: Acety 32.9 51 0.0011 26.8 3.3 41 236-276 96-136 (142)
71 PRK12267 methionyl-tRNA synthe 32.4 38 0.00083 36.8 3.1 29 248-276 18-50 (648)
72 cd00812 LeuRS_core catalytic c 32.0 31 0.00067 34.0 2.1 29 248-276 14-46 (314)
73 PF01921 tRNA-synt_1f: tRNA sy 31.9 1.1E+02 0.0023 31.7 5.9 75 235-310 24-148 (360)
74 PRK05710 glutamyl-Q tRNA(Asp) 30.9 62 0.0013 32.3 4.1 34 243-277 13-47 (299)
75 TIGR00435 cysS cysteinyl-tRNA 30.8 72 0.0016 33.5 4.7 42 233-275 19-65 (465)
76 cd00818 IleRS_core catalytic c 30.7 47 0.001 33.1 3.2 29 248-276 15-47 (338)
77 PRK12418 cysteinyl-tRNA synthe 30.1 58 0.0012 33.7 3.8 40 236-276 10-54 (384)
78 cd00418 GlxRS_core catalytic c 29.9 69 0.0015 30.8 4.0 33 243-276 9-42 (230)
79 TIGR00125 cyt_tran_rel cytidyl 29.1 64 0.0014 23.6 3.0 12 51-62 7-20 (66)
80 PRK14536 cysS cysteinyl-tRNA s 28.9 74 0.0016 34.0 4.4 41 233-274 21-66 (490)
81 PLN02946 cysteine-tRNA ligase 28.9 73 0.0016 34.6 4.4 42 233-275 78-124 (557)
82 PRK14535 cysS cysteinyl-tRNA s 28.5 77 0.0017 35.4 4.6 42 233-275 246-292 (699)
83 PF13758 Prefoldin_3: Prefoldi 27.6 39 0.00086 28.7 1.7 35 114-148 54-94 (99)
84 COG0143 MetG Methionyl-tRNA sy 27.5 64 0.0014 35.0 3.7 32 244-276 16-51 (558)
85 PLN02224 methionine-tRNA ligas 27.1 57 0.0012 35.7 3.3 29 248-276 83-115 (616)
86 TIGR03838 queuosine_YadB gluta 26.2 84 0.0018 30.9 4.0 33 243-276 8-41 (272)
87 PRK00133 metG methionyl-tRNA s 25.9 75 0.0016 34.8 4.0 32 244-276 13-48 (673)
88 PRK14534 cysS cysteinyl-tRNA s 25.6 95 0.002 33.1 4.5 38 234-272 20-62 (481)
89 PF00749 tRNA-synt_1c: tRNA sy 25.5 86 0.0019 31.2 4.0 34 243-277 9-43 (314)
90 TIGR03447 mycothiol_MshC cyste 25.4 94 0.002 32.5 4.4 41 235-276 36-81 (411)
91 cd09287 GluRS_non_core catalyt 25.1 94 0.002 30.1 4.0 36 240-276 6-42 (240)
92 cd00807 GlnRS_core catalytic c 24.7 95 0.0021 30.1 4.0 33 243-276 9-42 (238)
93 PF00133 tRNA-synt_1: tRNA syn 24.5 72 0.0016 34.5 3.5 29 248-276 37-69 (601)
94 PRK12268 methionyl-tRNA synthe 23.8 65 0.0014 34.1 2.9 29 248-276 17-50 (556)
95 PLN02563 aminoacyl-tRNA ligase 22.7 92 0.002 36.0 4.0 35 241-276 117-157 (963)
96 COG0525 ValS Valyl-tRNA synthe 22.5 63 0.0014 36.9 2.6 31 248-278 47-81 (877)
97 TIGR00396 leuS_bact leucyl-tRN 21.3 72 0.0016 36.1 2.8 29 248-276 43-75 (842)
98 cd02156 nt_trans nucleotidyl t 20.9 1.3E+02 0.0027 24.5 3.5 29 245-276 7-35 (105)
No 1
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-43 Score=352.60 Aligned_cols=190 Identities=26% Similarity=0.325 Sum_probs=166.5
Q ss_pred CcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCcccccc
Q psy14958 44 TQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVG 117 (362)
Q Consensus 44 ~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IG 117 (362)
.|+++|+|||| +||+|+++ ||++||+.| |++ ++|||||||+||
T Consensus 31 ~~~~~Y~GfDPTa~slHlGhlv~l~---------------kL~~fQ~aG--h~~--------------ivLigd~ta~Ig 79 (401)
T COG0162 31 GPLRVYIGFDPTAPSLHLGHLVPLM---------------KLRRFQDAG--HKP--------------IVLIGDATAMIG 79 (401)
T ss_pred CCceEEEeeCCCCCccchhhHHHHH---------------HHHHHHHCC--CeE--------------EEEecccceecC
Confidence 39999999999 89999999 999999999 999 899999999999
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhh
Q psy14958 118 DPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDM 197 (362)
Q Consensus 118 DPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~M 197 (362)
|||||+++|++++.|+|.+|+++|.+|+.++++ +++++||||+|++++++.+||+++|+|||||+|
T Consensus 80 DpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld--------------~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rm 145 (401)
T COG0162 80 DPSGKSEERKLLTRETVLENAETIKKQLGKFLD--------------NKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRM 145 (401)
T ss_pred CCCCCHHHHhhccHHHHHHHHHHHHHHhcccCC--------------cceEEEechHHhCcCCHHHHHHHHHhHccHHHH
Confidence 999999999999999999999999999999975 468999999999999999999999999999999
Q ss_pred hhhc----------------------------------ccCccchhHHHhhcccchhccccc-----eeeeecc------
Q psy14958 198 LKKQ----------------------------------SVGGSDQMGNIKAGHDLISKLYGK-----TVFDLLV------ 232 (362)
Q Consensus 198 L~Rd----------------------------------~iGGsDQ~~NI~rGrdLi~r~~gq-----eLp~LL~------ 232 (362)
|+|| ++||+|||+|++.|++++++.... ++|+|..
T Consensus 146 l~~d~~~~R~~~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~Km 225 (401)
T COG0162 146 LRRDDVKKRLEREQGISFTEFNYPLLQAYDFVYLNKDLQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKM 225 (401)
T ss_pred HHhhhHHHHhccCCCCchhhhhhHHHHHHHHHHHccchhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCcc
Confidence 9998 379999999999999999974333 4677652
Q ss_pred CCCCce-eeccCCC--CCCcchhhHhHH---HHHHHHHHcCCceEEeecchhH
Q psy14958 233 RTPQTV-YAGFDPT--ASSLHIGNLLIL---INLIHWQRAGHQVIALMICLSQ 279 (362)
Q Consensus 233 sksl~~-YiG~dpT--a~~lHlGhlmsi---l~lr~fq~~G~~~i~lIg~i~~ 279 (362)
+||.++ |++.... |-++ +...+.+ .+++|+....+.+...|..|.+
T Consensus 226 gKs~~~a~~~~s~~~Sp~~~-yq~~~~i~D~~~~~~~~~~t~l~~~eI~~i~~ 277 (401)
T COG0162 226 GKSEGGAVWLDSEKTSPYDF-YQYWMNIEDADVKRFLKLLTFLSLEEIEEIEK 277 (401)
T ss_pred cccCCCceEccCCCCCcHhh-hhcHhcCcHHHHHHHHHHhCcCChHHHHHHHH
Confidence 567776 7766433 5567 8889988 9999999987776555555443
No 2
>KOG2623|consensus
Probab=100.00 E-value=1e-42 Score=343.79 Aligned_cols=233 Identities=30% Similarity=0.439 Sum_probs=189.0
Q ss_pred hccccchhhhHHHHHHHHhc-CchhhHHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchh
Q psy14958 8 SKSEKLFVAMNCREILSEIF-GLKYFLSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAF 80 (362)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
|.+++.+...+.|.++...+ -+.....+.|. ..|.|.+||+|||| +||+|++. .|.
T Consensus 27 S~s~~~L~~l~aR~l~~~s~Pet~~~~~~~L~--~rglp~~vYcGfDPTA~SLHvGNLl~lm---------------~L~ 89 (467)
T KOG2623|consen 27 SRSQDYLTELKARGLFQTSFPETLSKCSEDLN--GRGLPQYVYCGFDPTAESLHVGNLLALM---------------VLI 89 (467)
T ss_pred hhHHHHHHHHHhcccccccCCCccchhhhhhh--cCCCCceEEecCCCcHHhhhhcchHHHH---------------HHH
Confidence 56666666666666665444 22122222221 12679999999999 89999999 888
Q ss_pred hhhhcCCCccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q psy14958 81 LYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDR 160 (362)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~ 160 (362)
+||..| |++ |.|||||||.|||||||++||+.|..+.+++|+++|++|+.+|+.|+.+|++...
T Consensus 90 hfqr~G--h~~--------------ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~ 153 (467)
T KOG2623|consen 90 HFQRAG--HRP--------------IALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGS 153 (467)
T ss_pred HHHHcC--CCc--------------eEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCc
Confidence 999999 999 8999999999999999999999999999999999999999999999999995432
Q ss_pred CCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhhhhc--------------------------------------c
Q psy14958 161 KDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQ--------------------------------------S 202 (362)
Q Consensus 161 ~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~Rd--------------------------------------~ 202 (362)
+.++.+|+||++||++++++|||+++|+||+|++||+|| +
T Consensus 154 --s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ~lQAYDfy~L~~~~g~~~Q 231 (467)
T KOG2623|consen 154 --SQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQLLQAYDFYHLYENYGCRFQ 231 (467)
T ss_pred --ccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHhcCeeEE
Confidence 237899999999999999999999999999999999998 3
Q ss_pred cCccchhHHHhhcccchhccccc-------eeeeecc------CCCCceeeccCCCCCCcchhhHhHH-------HHHHH
Q psy14958 203 VGGSDQMGNIKAGHDLISKLYGK-------TVFDLLV------RTPQTVYAGFDPTASSLHIGNLLIL-------INLIH 262 (362)
Q Consensus 203 iGGsDQ~~NI~rGrdLi~r~~gq-------eLp~LL~------sksl~~YiG~dpTa~~lHlGhlmsi-------l~lr~ 262 (362)
+||||||+||+.|+|+|+|+... ++|+++. .||-+|-+=+||+-.+. + |+..+ -..+.
T Consensus 232 lGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp~~tsp-y-~lYQfF~~~pDd~v~k~ 309 (467)
T KOG2623|consen 232 LGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDPSKTSP-Y-HLYQFFASLPDDDVEKF 309 (467)
T ss_pred ecccccccccchHHHHHHHhcccccceeeeeeeeEecCcchhhccCCCceEEecCccCCc-H-HHHHHHHhCchhHHHHH
Confidence 69999999999999999987662 4677753 46777777778877665 4 33333 66777
Q ss_pred HHHcCCceEEeecch
Q psy14958 263 WQRAGHQVIALMICL 277 (362)
Q Consensus 263 fq~~G~~~i~lIg~i 277 (362)
+..+.+-|+..|..|
T Consensus 310 LklfTfl~l~eI~~I 324 (467)
T KOG2623|consen 310 LKLFTFLPLEEIKQI 324 (467)
T ss_pred HHHHhcCCHHHHHHH
Confidence 888888888777763
No 3
>KOG2623|consensus
Probab=100.00 E-value=3.4e-38 Score=311.75 Aligned_cols=183 Identities=40% Similarity=0.686 Sum_probs=142.0
Q ss_pred EeChhhhccCCHHHHHHHHHhhhhhhhhhhhcccCccchhHHHh--hcccchhccccce----eeeeccCC-CCceeecc
Q psy14958 170 VNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVGGSDQMGNIK--AGHDLISKLYGKT----VFDLLVRT-PQTVYAGF 242 (362)
Q Consensus 170 ~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~Rd~iGGsDQ~~NI~--rGrdLi~r~~gqe----Lp~LL~sk-sl~~YiG~ 242 (362)
++|+-|+.++....+|.-+. ++-.+ .-+++ .+|. .-|.+..-.+.++ ++.|-... +..+|+||
T Consensus 1 ~~~sr~~~pl~~~s~l~pl~--~r~~~------~S~s~--~~L~~l~aR~l~~~s~Pet~~~~~~~L~~rglp~~vYcGf 70 (467)
T KOG2623|consen 1 MFNSRRIGPLALRSVLSPLE--LREVQ------DSRSQ--DYLTELKARGLFQTSFPETLSKCSEDLNGRGLPQYVYCGF 70 (467)
T ss_pred CCccccccchhhhhhccchh--hhhhh------hhhHH--HHHHHHHhcccccccCCCccchhhhhhhcCCCCceEEecC
Confidence 37888988888777766443 11111 11111 1121 1222222233444 23332223 68899999
Q ss_pred CCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchh---------------------------------H-------Hhh
Q psy14958 243 DPTASSLHIGNLLILINLIHWQRAGHQVIALMICLS---------------------------------Q-------ILW 282 (362)
Q Consensus 243 dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~---------------------------------~-------~l~ 282 (362)
||||+|+|+||+++++.+.|||.+||+|+++||+.| + |++
T Consensus 71 DPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~ 150 (467)
T KOG2623|consen 71 DPTAESLHVGNLLALMVLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYR 150 (467)
T ss_pred CCcHHhhhhcchHHHHHHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhc
Confidence 999999999999999999999999999999999943 1 122
Q ss_pred cC--CCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhhhcCcee
Q psy14958 283 RT--CNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRF 360 (362)
Q Consensus 283 ~~--~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~~~~~~~ 360 (362)
++ ..+..||||++||+++.+.|||.++|+||+|+.||+|++|+.|+++.+||||+||+||+||||||+||+++|||++
T Consensus 151 ~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ~lQAYDfy~L~~~~g~~~ 230 (467)
T KOG2623|consen 151 DGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQLLQAYDFYHLYENYGCRF 230 (467)
T ss_pred CCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHhcCeeE
Confidence 22 1478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy14958 361 QA 362 (362)
Q Consensus 361 Qi 362 (362)
||
T Consensus 231 Ql 232 (467)
T KOG2623|consen 231 QL 232 (467)
T ss_pred Ee
Confidence 96
No 4
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-37 Score=313.29 Aligned_cols=146 Identities=36% Similarity=0.657 Sum_probs=129.8
Q ss_pred hhHHHhhc-ccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhhc---
Q psy14958 208 QMGNIKAG-HDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWR--- 283 (362)
Q Consensus 208 Q~~NI~rG-rdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~~--- 283 (362)
+...+.|| .+.+. +.+++..+++.+++.+|+||||||+++|+||+|+++++++||++||+|+++|||+|.++.+
T Consensus 6 ~~~L~~Rg~~~~i~--~ee~l~~ll~~~~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~IgDpsG 83 (401)
T COG0162 6 LLELIKRGLIEQIT--DEEELRKLLEEGPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGDPSG 83 (401)
T ss_pred HHHHHHcCchhccC--cHHHHHHHHhcCCceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecCCCCC
Confidence 56678899 45553 4556777777779999999999999999999999999999999999999999998733321
Q ss_pred --------------------------CCC-ceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcc
Q psy14958 284 --------------------------TCN-EEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNY 336 (362)
Q Consensus 284 --------------------------~~~-~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~ 336 (362)
..+ ++++|+|++|+++++|++||+++|++|||+||+++|+|+.|+++++|+||
T Consensus 84 k~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~ 163 (401)
T COG0162 84 KSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISF 163 (401)
T ss_pred CHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCch
Confidence 133 79999999999999999999999999999999999999999998889999
Q ss_pred hhhhhhhHhHHhHHHHhhh
Q psy14958 337 TEFSYQIFQSYDWAHLYKE 355 (362)
Q Consensus 337 ~Ef~YpllQayDf~~L~~~ 355 (362)
+||+||+||||||++|+.+
T Consensus 164 ~Ef~YpLmQayD~~~L~~d 182 (401)
T COG0162 164 TEFNYPLLQAYDFVYLNKD 182 (401)
T ss_pred hhhhhHHHHHHHHHHHccc
Confidence 9999999999999999987
No 5
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-37 Score=314.66 Aligned_cols=191 Identities=27% Similarity=0.358 Sum_probs=168.6
Q ss_pred ccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCcc
Q psy14958 40 GSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGAT 113 (362)
Q Consensus 40 ~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~T 113 (362)
..+++|+++|+|||| +||++++. +++.||+.| |.+ +++|||+|
T Consensus 28 ~~~~~~~~iy~G~dPT~~sLHlGhlv~l~---------------~l~~lq~~G--~~~--------------~~ligd~t 76 (410)
T PRK13354 28 LKEGKPLTLYLGFDPTAPSLHIGHLVPLM---------------KLKRFQDAG--HRP--------------VILIGGFT 76 (410)
T ss_pred HhcCCCcEEEEcccCCCCCcchhhHHHHH---------------HHHHHHHcC--CeE--------------EEEEcccc
Confidence 356899999999999 89999999 999999999 999 89999999
Q ss_pred ccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhh
Q psy14958 114 AQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFR 193 (362)
Q Consensus 114 a~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~ 193 (362)
|+|||||||+++|+.+|.|+|.+|+++|..|+.++|+ +++++|++|++|++++++.+||+++|+++|
T Consensus 77 a~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~~ld-------------~~k~~i~~ns~w~~~~~~~~~l~~v~~~~t 143 (410)
T PRK13354 77 GKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFKLFD-------------FEKTEIVNNSDWLSKLNLIDFLRDYGKHFT 143 (410)
T ss_pred cccCCCCcccccccCCCHHHHHHHHHHHHHHHHHhcC-------------ccceEEEECccccccccHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999997 568999999999999999999999999999
Q ss_pred hhhhhhhc--------------------------------------ccCccchhHHHhhcccchhccccc-----eeeee
Q psy14958 194 MGDMLKKQ--------------------------------------SVGGSDQMGNIKAGHDLISKLYGK-----TVFDL 230 (362)
Q Consensus 194 v~~ML~Rd--------------------------------------~iGGsDQ~~NI~rGrdLi~r~~gq-----eLp~L 230 (362)
|++|++++ ++||+|||+|++.|+|++++.... ++|.|
T Consensus 144 v~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL 223 (410)
T PRK13354 144 VNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLL 223 (410)
T ss_pred HHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCc
Confidence 99999875 259999999999999999975332 46666
Q ss_pred c------cCCCCceeeccCCC---CCCcchhhHhHH---HHHHHHHHcCCceEEeec
Q psy14958 231 L------VRTPQTVYAGFDPT---ASSLHIGNLLIL---INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 231 L------~sksl~~YiG~dpT---a~~lHlGhlmsi---l~lr~fq~~G~~~i~lIg 275 (362)
. .|||.+++|.+|++ |.++ +++++.+ .+.+|+..+.+.+...|.
T Consensus 224 ~g~dG~KMsKS~~naI~L~d~~tsp~~i-~qki~~~~D~~v~~~l~~~t~l~~~ei~ 279 (410)
T PRK13354 224 EGADGTKMGKSAGGAIWLDPEKTSPYEF-YQFWMNIDDRDVVKYLKLFTDLSPDEID 279 (410)
T ss_pred cCCCCCccCCCCCCceeccCCCCCHHHH-HHHHHcCChHHHHHHHHHHhCCCHHHHH
Confidence 4 27889999999999 9888 9998887 557777777764444333
No 6
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=1.7e-34 Score=288.59 Aligned_cols=198 Identities=27% Similarity=0.346 Sum_probs=163.8
Q ss_pred CchhhHH--HHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhh
Q psy14958 28 GLKYFLS--PLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFL 99 (362)
Q Consensus 28 g~~~~~~--~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 99 (362)
|+.+... +.+.+..++ |+++|+|||| +||+|+++ |++.||+.| |.+
T Consensus 12 g~~~~~t~~~~l~~ll~~-~~~vy~G~dPTg~~lHlGh~v~l~---------------~l~~lq~~G--~~~-------- 65 (377)
T TIGR00234 12 GLEVQVPEEEELLKLLER-KIKLYVGFDPTAPSLHLGHLVPLL---------------KLRDFQQAG--HEV-------- 65 (377)
T ss_pred CCEEEcCCHHHHHHHhcC-CCEEEEeeCCCCCCccHHHHHHHH---------------HHHHHHHCC--CcE--------
Confidence 6544433 233333233 9999999999 79999998 999999999 999
Q ss_pred hcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccC
Q psy14958 100 TTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSI 179 (362)
Q Consensus 100 ~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m 179 (362)
+++|||+||+||||||++++|+.++.|+|.+|+++|+.|+.+++| +++++|++|++|+.++
T Consensus 66 ------~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~~~i~~~la~gld-------------~~k~~iv~ns~w~~~~ 126 (377)
T TIGR00234 66 ------IVLLGDATALIGDPSGKSEERKLLTREEVQENAENIKKQIARFLD-------------FEKAKFVNNSEWLLKL 126 (377)
T ss_pred ------EEEEeccchhhcCCCChHHHhhcCCHHHHHHHHHHHHHHHHHhCC-------------hhheEEEECchhcCcC
Confidence 799999999999999999999999999999999999999999998 5689999999999999
Q ss_pred CHHHHHHHHHhhhhhhhhhhhc--------------------------------ccCccchhHHHhhcccchhccccc--
Q psy14958 180 NVIDFMNHIARLFRMGDMLKKQ--------------------------------SVGGSDQMGNIKAGHDLISKLYGK-- 225 (362)
Q Consensus 180 ~~~dfL~~lg~~f~v~~ML~Rd--------------------------------~iGGsDQ~~NI~rGrdLi~r~~gq-- 225 (362)
++.+|++++|+++||++|++++ ++||+|||+||+.|++++++..+.
T Consensus 127 ~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~~ef~YpllQa~D~~~l~~di~~gG~DQ~~ni~~g~dLar~~~~~~~ 206 (377)
T TIGR00234 127 NYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAYDFVYLNVDLQIGGSDQWGNIRKGRDLIRRNLPSLG 206 (377)
T ss_pred CHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCchhhhhHHHHHHHHHHHcCCeeEecchhHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999997 269999999999999999865332
Q ss_pred ---eeeeec------cCCCCceeeccCCCCCCcchhhHhHH---HHHHHHHHcCCceE
Q psy14958 226 ---TVFDLL------VRTPQTVYAGFDPTASSLHIGNLLIL---INLIHWQRAGHQVI 271 (362)
Q Consensus 226 ---eLp~LL------~sksl~~YiG~dpTa~~lHlGhlmsi---l~lr~fq~~G~~~i 271 (362)
+.|.+. .|||.++|+..+|++.++ +.+++.. .+-+++..+..-+.
T Consensus 207 ~~~t~pLl~~~dg~KmgKS~~~~i~l~~~~~~~-~i~~~d~~D~~~~Ki~k~~t~~~~ 263 (377)
T TIGR00234 207 FGLTVPLLTPADGEKMGKSGGGAVSLDEGKYDF-YQFWINTPDEDVKKILKLFTFLGL 263 (377)
T ss_pred eeeceeeecCCCCCCccCCCCCcccCCccHhhh-hhhhcCCcHHHHHHHHHHcCCCcH
Confidence 455553 267888999999885444 5555554 55556555555554
No 7
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.8e-34 Score=287.25 Aligned_cols=181 Identities=25% Similarity=0.375 Sum_probs=159.8
Q ss_pred CCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccc
Q psy14958 43 STQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQV 116 (362)
Q Consensus 43 ~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~I 116 (362)
++|++++.|||| +||++++. +++.||+.| |.+ +++|||+||+|
T Consensus 31 ~~~~~vy~G~dPTg~slHlGhlv~l~---------------~l~~lQ~~G--~~~--------------~~ligd~ta~i 79 (408)
T PRK05912 31 KEPLRIYLGFDPTAPSLHLGHLVPLL---------------KLRRFQDAG--HKP--------------IALIGGFTGMI 79 (408)
T ss_pred CCCCEEEEeecCCCCCccHHhHHHHH---------------HHHHHHHCC--CcE--------------EEEEcCceeEc
Confidence 689999999999 89999998 999999998 999 89999999999
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC--cEEEeChhhhccCCHHHHHHHHHhhhhh
Q psy14958 117 GDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKP--PIVVNNMSWYNSINVIDFMNHIARLFRM 194 (362)
Q Consensus 117 GDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~--~~i~nN~~Wl~~m~~~dfL~~lg~~f~v 194 (362)
||||||+++|+.+|.|++.+|+++|++|+..+|| +++ ++|++|++|++.+.+.+||+++|+++||
T Consensus 80 gDpsgk~~~r~~l~~e~i~~n~~~i~~ql~~~ld-------------~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v 146 (408)
T PRK05912 80 GDPSGKSETRKLLTREQVAENAETIKEQLFKFLD-------------FEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTV 146 (408)
T ss_pred CCCCCCchhhccCCHHHHHHHHHHHHHHHHHhcC-------------cCcCcEEEEECCCcCCcccHHHHHHHHhhhccH
Confidence 9999999999999999999999999999999997 445 9999999999999999999999999999
Q ss_pred hhhhhhc--------------------------------------ccCccchhHHHhhcccchhcccc-----ceeeeec
Q psy14958 195 GDMLKKQ--------------------------------------SVGGSDQMGNIKAGHDLISKLYG-----KTVFDLL 231 (362)
Q Consensus 195 ~~ML~Rd--------------------------------------~iGGsDQ~~NI~rGrdLi~r~~g-----qeLp~LL 231 (362)
++|++++ ++||+|||+||+.||+++++... .++|.|.
T Consensus 147 ~~m~~~~~~k~r~~~~~~is~~ef~Yp~LQa~D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~ 226 (408)
T PRK05912 147 NRMLERDDFKKRLREGQGISFTEFLYPLLQGYDFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLT 226 (408)
T ss_pred HHHhhcchHHHHhccCCCCchhhhhhHHHHHhhHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcC
Confidence 9999865 25999999999999999997532 2455553
Q ss_pred ------cCCCCceeeccCC---CCCCcchhhHhHH---HHHHHHHHcCC
Q psy14958 232 ------VRTPQTVYAGFDP---TASSLHIGNLLIL---INLIHWQRAGH 268 (362)
Q Consensus 232 ------~sksl~~YiG~dp---Ta~~lHlGhlmsi---l~lr~fq~~G~ 268 (362)
.|||.+++|.+|+ ||.++ ..+++.+ -..+++..++.
T Consensus 227 ~~~G~KMsKS~~naI~L~d~~tsp~~i-~qki~~~~D~~v~~~l~~~t~ 274 (408)
T PRK05912 227 GLDGKKMGKSEGNAVWLDEEKTSPYEM-YQKWMNISDADVWRYLKLLTF 274 (408)
T ss_pred CCCCCcccCCCCCceeCCCCCCCHHHH-HHHHhcCChHHHHHHHHHHhc
Confidence 2788899999999 99888 8888876 45555555554
No 8
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=99.97 E-value=1.3e-32 Score=277.65 Aligned_cols=148 Identities=34% Similarity=0.616 Sum_probs=127.2
Q ss_pred hcccchhccccceeee-eccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhh----------
Q psy14958 214 AGHDLISKLYGKTVFD-LLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW---------- 282 (362)
Q Consensus 214 rGrdLi~r~~gqeLp~-LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~---------- 282 (362)
||...+.. ..+++.. +..++++.+|+|||||++++|+||+++++++++||++||+++++|||+|..+.
T Consensus 12 Rg~~~~~~-~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~ 90 (410)
T PRK13354 12 RGAINQET-DEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERK 90 (410)
T ss_pred cCCchhcC-CHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccccccCCCCccccccc
Confidence 55444431 1233544 34578999999999999999999999999999999999999999999762221
Q ss_pred ---------------------cCCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhh
Q psy14958 283 ---------------------RTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSY 341 (362)
Q Consensus 283 ---------------------~~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~Y 341 (362)
-++++++|++|++|+++++|.+|++++++++|+++|+++++|++|+++++++|++||+|
T Consensus 91 ~l~~e~i~~n~~~i~~q~~~~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~Y 170 (410)
T PRK13354 91 LLTDEQVQHNAKTYTEQIFKLFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFY 170 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhcc
Confidence 02568999999999999999999988999999999999999999998778999999999
Q ss_pred hhHhHHhHHHHhhhcCceecC
Q psy14958 342 QIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 342 pllQayDf~~L~~~~~~~~Qi 362 (362)
|+||||||++|+++|+|.+|+
T Consensus 171 pllQa~D~~~l~~~~~~~iq~ 191 (410)
T PRK13354 171 PLLQAYDFVHLNRKEDVDLQI 191 (410)
T ss_pred HHHHhhhHHHHhccCCCCEEE
Confidence 999999999999999999984
No 9
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=99.97 E-value=9.1e-32 Score=271.32 Aligned_cols=154 Identities=32% Similarity=0.619 Sum_probs=133.3
Q ss_pred hhHHHh-hcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhh----
Q psy14958 208 QMGNIK-AGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW---- 282 (362)
Q Consensus 208 Q~~NI~-rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~---- 282 (362)
++..|. ||...+.. ..+++..+++++++.+|+|||||++++|+||++++++|++||++||+++++|||+|+.+.
T Consensus 6 ~l~~l~~Rg~~~~~~-~~~~l~~~l~~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~G~~~~~ligd~ta~igDpsg 84 (408)
T PRK05912 6 LLEELKERGLIEQIT-DEEELEEKLAKEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDAGHKPIALIGGFTGMIGDPSG 84 (408)
T ss_pred HHHHHHhCCCeeecC-CHHHHHHHhhCCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHCCCcEEEEEcCceeEcCCCCC
Confidence 556677 88777652 134566666678899999999999999999999999999999999999999999652110
Q ss_pred -------------------------c--CCCc--eEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCC
Q psy14958 283 -------------------------R--TCNE--EAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHG 333 (362)
Q Consensus 283 -------------------------~--~~~~--~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~g 333 (362)
. ++++ ++|++|++|+.++++.+|++++++++|+++|+++++|++|+..+.+
T Consensus 85 k~~~r~~l~~e~i~~n~~~i~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~~~~ 164 (408)
T PRK05912 85 KSETRKLLTREQVAENAETIKEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLREGQG 164 (408)
T ss_pred CchhhccCCHHHHHHHHHHHHHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhccCCC
Confidence 0 2445 9999999999999999999999999999999999999999976678
Q ss_pred CcchhhhhhhHhHHhHHHHhhhcCceecC
Q psy14958 334 MNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 334 is~~Ef~YpllQayDf~~L~~~~~~~~Qi 362 (362)
+|++||+||+||||||++|+++|+|.+|+
T Consensus 165 is~~ef~Yp~LQa~D~l~l~~~~~~~i~~ 193 (408)
T PRK05912 165 ISFTEFLYPLLQGYDFVALNKRYGCDLQL 193 (408)
T ss_pred CchhhhhhHHHHHhhHHHHhccCCCCEEe
Confidence 99999999999999999999999999985
No 10
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=99.96 E-value=2.3e-30 Score=258.89 Aligned_cols=139 Identities=35% Similarity=0.654 Sum_probs=119.9
Q ss_pred Hhhcccchhcccc-ceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhhc-------
Q psy14958 212 IKAGHDLISKLYG-KTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWR------- 283 (362)
Q Consensus 212 I~rGrdLi~r~~g-qeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~~------- 283 (362)
..||...+. +. +.+..++.+ ++.+|+||||||+++|+||+++++++++||++||+++++|||+|+++.+
T Consensus 9 ~~rg~~~~~--t~~~~l~~ll~~-~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~ 85 (377)
T TIGR00234 9 KKRGLEVQV--PEEEELLKLLER-KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEE 85 (377)
T ss_pred HHCCCEEEc--CCHHHHHHHhcC-CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccchhhcCCCChHHH
Confidence 346766553 33 335555555 8999999999999999999999999999999999999999997733310
Q ss_pred ------------------------CCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhh
Q psy14958 284 ------------------------TCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEF 339 (362)
Q Consensus 284 ------------------------~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef 339 (362)
++++++|++|++|+.+++|++|++++|+++|+++|+++++|++|++ ++++++||
T Consensus 86 R~~~~~~~i~~n~~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~--~~is~~ef 163 (377)
T TIGR00234 86 RKLLTREEVQENAENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLE--RGISLSEF 163 (377)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHh--cCCCchhh
Confidence 2458999999999999999999999999999999999999999997 46999999
Q ss_pred hhhhHhHHhHHHHhhh
Q psy14958 340 SYQIFQSYDWAHLYKE 355 (362)
Q Consensus 340 ~YpllQayDf~~L~~~ 355 (362)
+||+||||||++|+.+
T Consensus 164 ~YpllQa~D~~~l~~d 179 (377)
T TIGR00234 164 IYPLLQAYDFVYLNVD 179 (377)
T ss_pred hhHHHHHHHHHHHcCC
Confidence 9999999999999876
No 11
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.95 E-value=5.5e-28 Score=232.26 Aligned_cols=124 Identities=33% Similarity=0.542 Sum_probs=113.1
Q ss_pred ceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHh------------------------------h--cC
Q psy14958 237 TVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL------------------------------W--RT 284 (362)
Q Consensus 237 ~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l------------------------------~--~~ 284 (362)
++|+|+|||++++|+||+++++.|++||++|++++++|||.|++. . .+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d 80 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIF 80 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCc
Confidence 489999999999999999999999999999999999999865211 0 12
Q ss_pred --CCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhhhcCceecC
Q psy14958 285 --CNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 285 --~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~~~~~~~Qi 362 (362)
+++++|++|++|++++++.+|+..+++++|+++|+++++|+.|++ ++++++||+||+||||||++++.+++|.+|+
T Consensus 81 ~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~--~~~~~~~~~Yp~lQaaD~l~l~~~~~~~~vp 158 (273)
T cd00395 81 EDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSE--EGISATEFTYPPLQAADFLLLNTTEGCDIQP 158 (273)
T ss_pred CCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhc--CCCCchhhhhHHHHHHHHHHHhcccCCcEEE
Confidence 568999999999999999999999999999999999999999994 6899999999999999999999999999984
No 12
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.94 E-value=4e-27 Score=226.29 Aligned_cols=169 Identities=24% Similarity=0.336 Sum_probs=142.1
Q ss_pred eEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCCC
Q psy14958 47 ISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPS 120 (362)
Q Consensus 47 ~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPS 120 (362)
.++.|+|| +||++.+. +++.||+.| |++ +++|||+||+|||||
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~---------------~~~~lq~~g--~~~--------------~~~I~d~~a~~~d~s 49 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLL---------------TFRRFQHAG--HRP--------------IFLIGGQTGIIGDPS 49 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHH---------------HHHHHHHCC--CCE--------------EEEEecCceeeCCCC
Confidence 37899999 79999988 999999988 998 899999999999999
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhhhh
Q psy14958 121 GKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKK 200 (362)
Q Consensus 121 Gr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~R 200 (362)
||+++|+.++.|++.+|++.+.+|+..+..+ ..|++++|++|++|++++++.||+.++++++|+++|+++
T Consensus 50 g~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d----------~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~ 119 (273)
T cd00395 50 GKKSERTLNDPEEVRQNIRRIAAQYLAVGIF----------EDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERK 119 (273)
T ss_pred CccccccCCCHHHHHHHHHHHHHHHHHhcCc----------CCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhC
Confidence 9999999999999999999999999998742 126789999999999999999999999999999999988
Q ss_pred c------------------------------------ccCccchhHHHhhcccchhccccc------eeeeec------c
Q psy14958 201 Q------------------------------------SVGGSDQMGNIKAGHDLISKLYGK------TVFDLL------V 232 (362)
Q Consensus 201 d------------------------------------~iGGsDQ~~NI~rGrdLi~r~~gq------eLp~LL------~ 232 (362)
+ ..||+|||+|+..||++++|..+. ..|.+. .
T Consensus 120 ~~~k~r~~~~~~~~~~~Yp~lQaaD~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KM 199 (273)
T cd00395 120 TSFQSRSEEGISATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKF 199 (273)
T ss_pred hHHHHHhcCCCCchhhhhHHHHHHHHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcC
Confidence 6 149999999999999999875321 123332 2
Q ss_pred CCCCceeeccC---CCCCCcchhhHhHH
Q psy14958 233 RTPQTVYAGFD---PTASSLHIGNLLIL 257 (362)
Q Consensus 233 sksl~~YiG~d---pTa~~lHlGhlmsi 257 (362)
|||.++++.++ .||.++ ..+++..
T Consensus 200 SKS~~~~i~l~~~~dsp~~i-~~ki~~a 226 (273)
T cd00395 200 GKSESGPKWLDTEKTSPYEF-YQFWINA 226 (273)
T ss_pred CCCCCCCccccccCCCHHHH-HHHHHcc
Confidence 77888887764 355555 5555554
No 13
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.93 E-value=1.6e-25 Score=214.40 Aligned_cols=162 Identities=31% Similarity=0.425 Sum_probs=138.2
Q ss_pred ceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCC
Q psy14958 46 GISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDP 119 (362)
Q Consensus 46 ~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDP 119 (362)
++++.|+|| +||.+.+. +++.+|+.| |.+ +++|||+||++|||
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~~---------------~~~~lq~~g--~~~--------------~ilI~D~~a~~~~~ 49 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPLM---------------KLRDFQQAG--HEV--------------IVLIGDATAMIGDP 49 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHHH---------------HHHHHHHCC--CeE--------------EEEECCCeeecCCC
Confidence 478999999 78999888 999999997 998 89999999999999
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhhh
Q psy14958 120 SGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLK 199 (362)
Q Consensus 120 SGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~ 199 (362)
|||+++|+.++.|+|++|++.+..|+..++.+. ++++++|++||+|+.++..++|++ +++++++++|++
T Consensus 50 ~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~----------~p~k~~i~~~s~~~~~l~~~~~l~-l~~~~~~~~l~~ 118 (269)
T cd00805 50 SGKSEERKLLDLELIRENAKYYKKQLKAILDFI----------PPEKAKFVNNSDWLLSLYTLDFLR-LGKHFTVNRMLR 118 (269)
T ss_pred CCccccccCCCHHHHHHHHHHHHHHHHHHHccC----------CCcceEEEEchHhhccCCHHHHHH-HHhhCcHHHHHH
Confidence 999999999999999999999999999998631 378999999999999999999999 999999999998
Q ss_pred hc----------------------------------ccCccchhHHHhhcccchhccccce-----eeeec------cCC
Q psy14958 200 KQ----------------------------------SVGGSDQMGNIKAGHDLISKLYGKT-----VFDLL------VRT 234 (362)
Q Consensus 200 Rd----------------------------------~iGGsDQ~~NI~rGrdLi~r~~gqe-----Lp~LL------~sk 234 (362)
++ .+||+||+.|+..||+++++..... .|.+. .||
T Consensus 119 ~~~~k~r~~~~~~~~~~~~~YP~lQaaDi~~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G~KMSK 198 (269)
T cd00805 119 RDAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSK 198 (269)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCCCcccC
Confidence 75 2599999999999999998753222 22221 266
Q ss_pred CCceee--ccCCCCCCc
Q psy14958 235 PQTVYA--GFDPTASSL 249 (362)
Q Consensus 235 sl~~Yi--G~dpTa~~l 249 (362)
|.++++ .+.++|.++
T Consensus 199 S~~~~~~i~l~dsp~~i 215 (269)
T cd00805 199 SEGNAIWDPVLDSPYDV 215 (269)
T ss_pred CCCCcccccCCCCHHHH
Confidence 776666 666666555
No 14
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.92 E-value=5.7e-25 Score=210.65 Aligned_cols=118 Identities=38% Similarity=0.699 Sum_probs=107.0
Q ss_pred CceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhh---------------------------------
Q psy14958 236 QTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--------------------------------- 282 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~--------------------------------- 282 (362)
+++|+|||||++++|+||+++++.|+++|++|++++++|||+|+++.
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILD 80 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHHHHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 46999999999999999999999999999999999999999663321
Q ss_pred c-CCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 283 R-TCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 283 ~-~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
+ ++++++|++||+|+.++.+.+|++ +++++|+++|+++++|+.|.+++++++++||+||+||||||++++.
T Consensus 81 ~~~p~k~~i~~~s~~~~~l~~~~~l~-l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaDi~~l~~ 152 (269)
T cd00805 81 FIPPEKAKFVNNSDWLLSLYTLDFLR-LGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDV 152 (269)
T ss_pred cCCCcceEEEEchHhhccCCHHHHHH-HHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhC
Confidence 1 266899999999999988899999 9999999999999999999976678999999999999999999875
No 15
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=99.90 E-value=6.8e-24 Score=203.90 Aligned_cols=122 Identities=33% Similarity=0.587 Sum_probs=110.4
Q ss_pred CCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhh-------------------------c--CC
Q psy14958 233 RTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------------------------R--TC 285 (362)
Q Consensus 233 sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~-------------------------~--~~ 285 (362)
.++..+|+|++||++ +|+||+++++.++++|++|++++++|||+|+++. - ++
T Consensus 3 ~~~~~~y~G~~PTg~-lHlG~l~~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~ 81 (292)
T PF00579_consen 3 NKPFRVYTGIDPTGD-LHLGHLVPIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDP 81 (292)
T ss_dssp HSSEEEEEEEESSSS--BHHHHHHHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHT
T ss_pred CCCcEEEEeECCCCc-ccchHHHHHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCc
Confidence 357899999999998 9999999999999999999999999999774332 1 15
Q ss_pred CceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhhh
Q psy14958 286 NEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKE 355 (362)
Q Consensus 286 ~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~~ 355 (362)
++++|++||+|+...+|+.++..+++.+++++|++++++++|++++++++++||+||+|||+||++|+.+
T Consensus 82 ~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~ 151 (292)
T PF00579_consen 82 EKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKAD 151 (292)
T ss_dssp TTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHS
T ss_pred cceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccc
Confidence 6899999999999999999999999999999999999999999976799999999999999999999876
No 16
>PLN02486 aminoacyl-tRNA ligase
Probab=99.85 E-value=1.5e-21 Score=196.00 Aligned_cols=177 Identities=12% Similarity=0.163 Sum_probs=139.7
Q ss_pred cCCHHHHHHHHHhhhhhhhhhhh-cccCccchhHHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhH
Q psy14958 178 SINVIDFMNHIARLFRMGDMLKK-QSVGGSDQMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 178 ~m~~~dfL~~lg~~f~v~~ML~R-d~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlms 256 (362)
.+++..+++++|..---..+++| +.+-|.+.+..+.||..+.++.....+..+.+++++.+|+|++||+++||+||+|+
T Consensus 15 ~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~~PSg~~lHlGHlv~ 94 (383)
T PLN02486 15 KIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIP 94 (383)
T ss_pred CcCHHHHHHHhCCCcCCHHHHHHHHHhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCCCCCCccccHHHHHH
Confidence 57899999999887666668887 56888999999999998888655444444445679999999999999999999999
Q ss_pred HHHHHHHHHcCCceE-EeecchhHHhh---------------------c--CCCceEEEechhhhcCCCHHHHHHHHHhh
Q psy14958 257 LINLIHWQRAGHQVI-ALMICLSQILW---------------------R--TCNEEAVVNNMSWYNSINVIDFMNHIARL 312 (362)
Q Consensus 257 il~lr~fq~~G~~~i-~lIg~i~~~l~---------------------~--~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~ 312 (362)
+++++|||++|+.++ +.|+|.++|++ - ++++++|++|++|..++.|.++++ ++++
T Consensus 95 ~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~~~~~~~~~~-l~r~ 173 (383)
T PLN02486 95 FMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVK-IAKC 173 (383)
T ss_pred HHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHhHhHHHHHHH-HHhh
Confidence 999999999966655 44688554332 0 366899999999998777789998 9999
Q ss_pred ccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHH-----Hhhh---cCceec
Q psy14958 313 FRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAH-----LYKE---HNCRFQ 361 (362)
Q Consensus 313 ~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~-----L~~~---~~~~~Q 361 (362)
+|+++|++...| . ++.++++|+||+|||+|+++ ++.. +.|.++
T Consensus 174 ~t~~~~~~~~gf----~--~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVP 224 (383)
T PLN02486 174 VTLNQVRGIFGF----S--GEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIP 224 (383)
T ss_pred CcHHHHHHhhCc----C--CCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceee
Confidence 999999864333 2 34577999999999999985 4332 447764
No 17
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=99.84 E-value=3.5e-21 Score=189.49 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=120.0
Q ss_pred chhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhhc--
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWR-- 283 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~~-- 283 (362)
++...|.+|.+++. +.+++..+++ ++++.+|+|++||++ +|+||+++++.|+++|++|++++++|+|+|++..+
T Consensus 3 ~~~~~~~~~~~e~~--~~~el~~~l~~~~~~~v~~G~~PTG~-lHLG~~~~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~ 79 (329)
T PRK08560 3 ERLELITRNTEEVV--TEEELRELLESKEEPKAYIGFEPSGK-IHLGHLLTMNKLADLQKAGFKVTVLLADWHAYLNDKG 79 (329)
T ss_pred HHHHHHHhCceeec--CHHHHHHHHhCCCCCEEEEccCCCCc-chhhhhHHHHHHHHHHHCCCeEEEEEccchhhcCCCC
Confidence 35677788988774 5677888876 678899999999996 99999999999999999999999999998744320
Q ss_pred ---------------------CCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhh
Q psy14958 284 ---------------------TCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQ 342 (362)
Q Consensus 284 ---------------------~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~Yp 342 (362)
++++++|+.+|+|.....|+.++..+++++|+++|.+..+++.|-. ++.++++|+||
T Consensus 80 ~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~--~~~~~g~l~YP 157 (329)
T PRK08560 80 DLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRM--EEPDVSKLVYP 157 (329)
T ss_pred CHHHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccC--CCCCHHHHHHH
Confidence 2568999999999988778887777999999999999877766543 23599999999
Q ss_pred hHhHHhHHHHh
Q psy14958 343 IFQSYDWAHLY 353 (362)
Q Consensus 343 llQayDf~~L~ 353 (362)
+|||+|++++.
T Consensus 158 ~lqaaDil~~~ 168 (329)
T PRK08560 158 LMQVADIFYLD 168 (329)
T ss_pred HHHHHHHHHhC
Confidence 99999999974
No 18
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=99.80 E-value=5.4e-20 Score=184.79 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=118.7
Q ss_pred chhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhh-HhHHHHHHHHHHcCCceEEeecchhHHhhc-
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGN-LLILINLIHWQRAGHQVIALMICLSQILWR- 283 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGh-lmsil~lr~fq~~G~~~i~lIg~i~~~l~~- 283 (362)
+|...|++|++++. +.+++..+++ ++++.+|+||+||+ .+|+|| ++..+.|+.||++|++++++|||+|++.++
T Consensus 39 e~~~~i~r~~~e~i--~~eel~~~l~~~~~~~v~~G~~PTG-~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~ 115 (383)
T PTZ00126 39 ERVKLCLSIGEECI--QPEELRELLKLKERPICYDGFEPSG-RMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNK 115 (383)
T ss_pred HHHHHHhcCceeec--CHHHHHHHHhcCCCCEEEEEECCCC-cccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCC
Confidence 47888999998874 6777877775 46789999999999 599999 577789999999999999999998743310
Q ss_pred ------------------------CCCceEEEechhhhcCCC--HHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcch
Q psy14958 284 ------------------------TCNEEAVVNNMSWYNSIN--VIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYT 337 (362)
Q Consensus 284 ------------------------~~~~~~Iv~NsdW~~~~~--~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~ 337 (362)
++++++|+.+|+|+..++ ||.+...+++++|+++|.+.-.++.|-+ +++++++
T Consensus 116 ~g~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~-~~~~~~g 194 (383)
T PTZ00126 116 MGGDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE-GDEQPCA 194 (383)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc-CCCCCch
Confidence 356899999999997765 4544445999999999998877777654 3567899
Q ss_pred hhhhhhHhHHhHHHHhhh
Q psy14958 338 EFSYQIFQSYDWAHLYKE 355 (362)
Q Consensus 338 Ef~YpllQayDf~~L~~~ 355 (362)
+|+||+|||+|++++..+
T Consensus 195 ~l~YP~LQaaDil~l~ad 212 (383)
T PTZ00126 195 QILYPCMQCADIFYLKAD 212 (383)
T ss_pred hhhhhHHHhhhhhccCCC
Confidence 999999999999998654
No 19
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=99.79 E-value=1.6e-20 Score=180.56 Aligned_cols=136 Identities=24% Similarity=0.324 Sum_probs=122.4
Q ss_pred CCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccc
Q psy14958 42 ASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQV 116 (362)
Q Consensus 42 ~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~I 116 (362)
+++|.+++.|+|| +||++++. ++..+|+.| |.+ +++|||.||++
T Consensus 2 ~~~~~~~y~G~~PTg~lHlG~l~~~~---------------~~~~lq~~g--~~~--------------~i~iaD~~a~~ 50 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTGDLHLGHLVPIM---------------KLIWLQKAG--FKV--------------IILIADLHALL 50 (292)
T ss_dssp THSSEEEEEEEESSSS-BHHHHHHHH---------------HHHHHHHTT--SEE--------------EEEEEHHHHHH
T ss_pred CCCCcEEEEeECCCCcccchHHHHHH---------------HHHHHHhcC--Ccc--------------ceEecchhhcc
Confidence 4689999999999 89999999 999999977 999 89999999999
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhh
Q psy14958 117 GDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGD 196 (362)
Q Consensus 117 GDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ 196 (362)
|||+ |.+.|+.....++..|. ++++...+| ++++.|++||+|+..+.+..++.++++++++++
T Consensus 51 ~~~~-~~~~~~~~~~~~~~~~~---~~~la~g~d-------------~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~ 113 (292)
T PF00579_consen 51 GDPS-KGDERKIRSRAEYNIND---KAILALGLD-------------PEKTEIFRQSDWPEHMELWWFLSDVARLFSLNR 113 (292)
T ss_dssp TTTT-GSSHHHHHHHHHHHHHH---HHHHHTTSH-------------TTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHH
T ss_pred cCcc-cccHHHHHHHHHHHHHH---HHHHHhccC-------------ccceEEEeCCCcccccchhhhhcccccccchhh
Confidence 9999 99999888877777776 677777776 788999999999999999999999999999999
Q ss_pred hhhhcc----------------------------------cCccchhHHHhhcccchhccccc
Q psy14958 197 MLKKQS----------------------------------VGGSDQMGNIKAGHDLISKLYGK 225 (362)
Q Consensus 197 ML~Rd~----------------------------------iGGsDQ~~NI~rGrdLi~r~~gq 225 (362)
|+++++ +||.||+.|+..||+++++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~ 176 (292)
T PF00579_consen 114 MLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRGHIELARDLARKFNYK 176 (292)
T ss_dssp HHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHH
T ss_pred hhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHHHHHHHHHHHhhhccc
Confidence 999972 49999999999999999875443
No 20
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=99.72 E-value=2.2e-17 Score=166.04 Aligned_cols=200 Identities=12% Similarity=-0.005 Sum_probs=144.3
Q ss_pred hhccccchhh--hHHHHHHHHhc-CchhhHH--HHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccc
Q psy14958 7 ESKSEKLFVA--MNCREILSEIF-GLKYFLS--PLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRRE 76 (362)
Q Consensus 7 ~~~~~~~~~~--~~~~~~~~~~~-g~~~~~~--~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~ 76 (362)
+.|-+|++-+ +++.+.++.+. |+.|++. ++.+..+++++++++.|+|| +||.++-.+
T Consensus 23 ~~~~~~~~~~~~~~~~e~~~~i~r~~~e~i~~eel~~~l~~~~~~~v~~G~~PTG~lHLG~g~i~~~------------- 89 (383)
T PTZ00126 23 ETGFRGSPPQSKLSLEERVKLCLSIGEECIQPEELRELLKLKERPICYDGFEPSGRMHIAQGILKAI------------- 89 (383)
T ss_pred hhhcccCCCCCCCCHHHHHHHHhcCceeecCHHHHHHHHhcCCCCEEEEEECCCCcccccchHhHhH-------------
Confidence 3444555554 56788888887 8776664 33333356899999999999 888432211
Q ss_pred cchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14958 77 EPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYF 156 (362)
Q Consensus 77 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~ 156 (362)
++..||++| |.+ +++|+|+||++|||+|++ .++| +|+..|..++.+.+..
T Consensus 90 -~~~~lq~~G--~~v--------------~~~IaD~hA~~~~~~g~~-------l~~i-~~~~~~~~~~~~A~Gl----- 139 (383)
T PTZ00126 90 -NVNKLTKAG--CVF--------------VFWVADWFALLNNKMGGD-------LEKI-RKVGEYFIEVWKAAGM----- 139 (383)
T ss_pred -HHHHHHhCC--CeE--------------EEEEccceeecCCCCCCC-------HHHH-HHHHHHHHHHHHHhCC-----
Confidence 556689999 999 799999999999999998 3667 4555666666666521
Q ss_pred hcccCCCCCCcEEEeChhhhccCC---HHHHHHHHHhhhhhhhh------hhhc--------------------------
Q psy14958 157 WKDRKDSLKPPIVVNNMSWYNSIN---VIDFMNHIARLFRMGDM------LKKQ-------------------------- 201 (362)
Q Consensus 157 ~~~~~~~~~~~~i~nN~~Wl~~m~---~~dfL~~lg~~f~v~~M------L~Rd-------------------------- 201 (362)
++++++|+.||+|+..++ ...+++ +++++|+++| ++|+
T Consensus 140 ------Dp~k~~i~~qS~~v~~~~~l~w~~~~~-la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~YP~LQaaDil~l~ad 212 (383)
T PTZ00126 140 ------DMDNVRFLWASEEINKNPNDYWLRVMD-IARSFNITRIKRCSQIMGRSEGDEQPCAQILYPCMQCADIFYLKAD 212 (383)
T ss_pred ------CccceEEEECChhhhhhhHHHHHHHHH-HhccCCHHHHHhhhhhhccccCCCCCchhhhhhHHHhhhhhccCCC
Confidence 277899999999998876 466777 8999999999 4553
Q ss_pred -ccCccchhHHHhhcccchhccccc---------eeeeec-----cCCCCce-eeccCCCCCCcchhhHhHH
Q psy14958 202 -SVGGSDQMGNIKAGHDLISKLYGK---------TVFDLL-----VRTPQTV-YAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 202 -~iGGsDQ~~NI~rGrdLi~r~~gq---------eLp~LL-----~sksl~~-YiG~dpTa~~lHlGhlmsi 257 (362)
..||.||...+.-.|++..+.... -+|.|- +|||..+ +|+++++++++ ..+++..
T Consensus 213 ivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~Dspe~I-~kKI~kA 283 (383)
T PTZ00126 213 ICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDV-NRKIKKA 283 (383)
T ss_pred EEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCCCCHHHH-HHHHHhC
Confidence 149999965555578888753211 134442 2777756 79999999988 8888774
No 21
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.72 E-value=1.2e-16 Score=170.30 Aligned_cols=176 Identities=10% Similarity=-0.008 Sum_probs=116.0
Q ss_pred HHHHHHhc-CchhhH-----HHHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCC
Q psy14958 20 REILSEIF-GLKYFL-----SPLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDC 88 (362)
Q Consensus 20 ~~~~~~~~-g~~~~~-----~~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 88 (362)
.+.++.+. +++|.+ ..++ .++++++++.|++| +||.+.-.+ |++.+++.|
T Consensus 4 ~e~~~ll~r~~~Evi~~eeL~~ll---~~~~~~rv~sGi~PTG~lHLGng~~~ai--------------k~~~~~q~g-- 64 (682)
T PTZ00348 4 DERYKLLRSVGEECIQESELRNLI---EKKPLIRCYDGFEPSGRMHIAQGIFKAV--------------NVNKCTQAG-- 64 (682)
T ss_pred HHHHHHHhcCceeecCHHHHHHHH---hcCCCCEEEEeeCCCCcCeeccHHHHHH--------------HHHHHHhCC--
Confidence 44455554 554444 4454 45788999999999 788432221 566667777
Q ss_pred ccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcE
Q psy14958 89 ENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168 (362)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~ 168 (362)
|.+ +++|+|.+|+++||+|++.+|. ..+.. +-.++.+.+.. ++++++
T Consensus 65 ~~~--------------~~lIAD~HAlt~~~~~~~l~~i-------~~~~~-~~~~~~lA~Gl-----------DpeK~~ 111 (682)
T PTZ00348 65 CEF--------------VFWVADWFALMNDKVGGELEKI-------RIVGR-YLIEVWKAAGM-----------DMDKVL 111 (682)
T ss_pred CeE--------------EEEEcchhhhcCCCCCCCHHHH-------HHHHH-HHHHHHHHcCC-----------CccceE
Confidence 888 7999999999999999977663 33332 22223333211 277899
Q ss_pred EEeChhhhccC---CHHHHHHHHHhhhhhhhhhhh-------c-------------------------ccCccchhHHHh
Q psy14958 169 VVNNMSWYNSI---NVIDFMNHIARLFRMGDMLKK-------Q-------------------------SVGGSDQMGNIK 213 (362)
Q Consensus 169 i~nN~~Wl~~m---~~~dfL~~lg~~f~v~~ML~R-------d-------------------------~iGGsDQ~~NI~ 213 (362)
|+.+|+|+... ....++. +++++|++++.++ + ..+|.||...+.
T Consensus 112 ~~~qSd~i~e~~el~w~lv~~-v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh~e 190 (682)
T PTZ00348 112 FLWSSEEITNHANTYWRTVLD-IGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKVNM 190 (682)
T ss_pred EEECcHhhhhhhHHHHHHHHH-HHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHHHH
Confidence 99999999865 2444556 9999999998763 1 139999976666
Q ss_pred hcccchhccccc----------eeeeec-----cCCCC-ceeeccCCCCCCc
Q psy14958 214 AGHDLISKLYGK----------TVFDLL-----VRTPQ-TVYAGFDPTASSL 249 (362)
Q Consensus 214 rGrdLi~r~~gq----------eLp~LL-----~sksl-~~YiG~dpTa~~l 249 (362)
..|++..+. +. -+|.|- +|||. +++|.+++|++++
T Consensus 191 LaRdia~~~-g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~Dspe~I 241 (682)
T PTZ00348 191 LAREYCDLI-GRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDV 241 (682)
T ss_pred HHHHHHHHh-CCCCCceecccccCcCCCCCCCcCCCCCCCCeecccCCHHHH
Confidence 667766642 21 133432 26776 5888888776543
No 22
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.71 E-value=5.2e-17 Score=162.62 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=127.6
Q ss_pred cCCHHHHHHHHHhhhhhhhhhhhcccCccchhHHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHH
Q psy14958 178 SINVIDFMNHIARLFRMGDMLKKQSVGGSDQMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 178 ~m~~~dfL~~lg~~f~v~~ML~Rd~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsi 257 (362)
.+++..+++++|..---..+++-+.+ +..+.||.-+.++....-+..+..++++.+|+|++||+ .||+||++++
T Consensus 14 ~~dy~kl~~~fg~~~~~~~~~~~~~~-----h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~~PSG-~lHLGh~~~~ 87 (368)
T PRK12285 14 IVDYDKLFEEFGIEPFTEVLPELPEP-----HPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGFMPSG-PMHIGHKMVF 87 (368)
T ss_pred cccHHHHHHHhCCCcCChHHHhcccc-----chHHhcCeeeecCCHHHHHHHHhcCCCeEEEEccCCCC-CccHHHHHHH
Confidence 37788888888876555555553333 88889999888865443333333467999999999998 6999999999
Q ss_pred HHHHHHHHcCCceEEeecchhHHhhc-----------------------CCCceEEEechhhhcCCCHHHHHHHHHhhcc
Q psy14958 258 INLIHWQRAGHQVIALMICLSQILWR-----------------------TCNEEAVVNNMSWYNSINVIDFMNHIARLFR 314 (362)
Q Consensus 258 l~lr~fq~~G~~~i~lIg~i~~~l~~-----------------------~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~t 314 (362)
..|+|+|++|+++++.|+|+|++.+. ++++++|+.+|+|.. +.++.-.+++++|
T Consensus 88 ~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~~---~~~l~~~l~~~~t 164 (368)
T PRK12285 88 DELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENIK---VYDLAFELAKKVN 164 (368)
T ss_pred HHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchHH---HHHHHHHHHhhCc
Confidence 99999999999999999998755420 367899999999974 6677667999999
Q ss_pred HHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 315 l~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
+++|.+.-.+ .+.++++.|+||+|||+|++++.-
T Consensus 165 ~~~l~r~~~f------~~~~~~g~~~YP~lQaADil~~~~ 198 (368)
T PRK12285 165 FSELKAIYGF------TGETNIGHIFYPATQAADILHPQL 198 (368)
T ss_pred HHHHHHhhCC------CCCCchhhhhhhHHHHHHHHhhcc
Confidence 9999763222 145799999999999999998644
No 23
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=99.68 E-value=9.5e-17 Score=155.03 Aligned_cols=114 Identities=15% Similarity=0.241 Sum_probs=97.0
Q ss_pred ceeeccCCCCCCcchhhHhH-HHHHHHHHHcCCceEEeecchhHHhhc-----------------------CCCceEEEe
Q psy14958 237 TVYAGFDPTASSLHIGNLLI-LINLIHWQRAGHQVIALMICLSQILWR-----------------------TCNEEAVVN 292 (362)
Q Consensus 237 ~~YiG~dpTa~~lHlGhlms-il~lr~fq~~G~~~i~lIg~i~~~l~~-----------------------~~~~~~Iv~ 292 (362)
.+|+|++||+ ++|+||+++ +..|+++|++|++++++|+|+|++... ++++++|+.
T Consensus 1 ~i~tG~~PTG-~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~ 79 (280)
T cd00806 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFF 79 (280)
T ss_pred CEEEeeCCCc-hhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEE
Confidence 3799999999 899999999 999999999999999999998744320 256799999
Q ss_pred chhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 293 NMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 293 NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
||+|.. +.+..-.+++++|++++.+...|+.|...+++++++.|+||+|||+|++++..
T Consensus 80 qS~~~~---~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaaDil~~~~ 138 (280)
T cd00806 80 QSDVPE---HYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADILLYKA 138 (280)
T ss_pred cCCcHH---HHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHhhhhhccC
Confidence 999983 43333348999999999998999888876678899999999999999998754
No 24
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=99.67 E-value=2.2e-16 Score=155.69 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=136.6
Q ss_pred hhhHHHHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccc
Q psy14958 30 KYFLSPLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKEL 104 (362)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 104 (362)
.+.|.+++ +++++.+++.|++| +||++++. +++.+|+.| |.+
T Consensus 18 ~~el~~~l---~~~~~~~v~~G~~PTG~lHLG~~~~~~---------------~~~~lq~~g--~~~------------- 64 (329)
T PRK08560 18 EEELRELL---ESKEEPKAYIGFEPSGKIHLGHLLTMN---------------KLADLQKAG--FKV------------- 64 (329)
T ss_pred HHHHHHHH---hCCCCCEEEEccCCCCcchhhhhHHHH---------------HHHHHHHCC--CeE-------------
Confidence 34444555 34789999999999 89999998 899999988 998
Q ss_pred eeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHH
Q psy14958 105 SNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVID 183 (362)
Q Consensus 105 ~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~d 183 (362)
+++|+|.||+++|| .+.++|++|+..+..++..+ +| +++++|+.||+|.....+-.
T Consensus 65 -~i~IaD~ha~~~~~---------~~~~~i~~~~~~~~~~~~A~G~d-------------p~k~~i~~qS~~~~~~~~~~ 121 (329)
T PRK08560 65 -TVLLADWHAYLNDK---------GDLEEIRKVAEYNKKVFEALGLD-------------PDKTEFVLGSEFQLDKEYWL 121 (329)
T ss_pred -EEEEccchhhcCCC---------CCHHHHHHHHHHHHHHHHHcCCC-------------hhheEEEecchhhccchHHH
Confidence 79999999999997 68899999999988888776 22 77899999999998877766
Q ss_pred HHHHHHhhhhhhhhhhh--------c------------------------ccCccchhHHHhhcccchhccccc------
Q psy14958 184 FMNHIARLFRMGDMLKK--------Q------------------------SVGGSDQMGNIKAGHDLISKLYGK------ 225 (362)
Q Consensus 184 fL~~lg~~f~v~~ML~R--------d------------------------~iGGsDQ~~NI~rGrdLi~r~~gq------ 225 (362)
++.++++++++++|.+. + ..||.||+.++..+|++.++....
T Consensus 122 ~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~ 201 (329)
T PRK08560 122 LVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKKPVCIH 201 (329)
T ss_pred HHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCCceEEE
Confidence 77779999999999973 1 149999999999999999863221
Q ss_pred --eeeeec-----cCCCC-ceeeccCCCCCCcchhhHhH
Q psy14958 226 --TVFDLL-----VRTPQ-TVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 226 --eLp~LL-----~sksl-~~YiG~dpTa~~lHlGhlms 256 (362)
-+|.|- .|||. +++|.++++++++ ..+++.
T Consensus 202 ~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I-~~KI~k 239 (329)
T PRK08560 202 TPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEI-RRKIKK 239 (329)
T ss_pred cCccCCCCCCCCCCcCCCCCCeecccCCHHHH-HHHHHh
Confidence 123332 25666 8899999999877 556555
No 25
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=99.58 E-value=3.7e-15 Score=147.14 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=100.2
Q ss_pred CCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhhc------------------------CCCceE
Q psy14958 234 TPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWR------------------------TCNEEA 289 (362)
Q Consensus 234 ksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~~------------------------~~~~~~ 289 (362)
++..+|+|++||+ .+|+||+++.++.++++.+|++++++|+|+|++.+. ++++++
T Consensus 1 ~~~~v~~G~~PTG-~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 79 (328)
T TIGR00233 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTF 79 (328)
T ss_pred CCCEEEEeeCCCc-HhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheE
Confidence 3678999999999 799999999999999999999999999998744320 367899
Q ss_pred EEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 290 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 290 Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
|+.+|+|. .+.++.-.+++++|++++.+...|+.|.. +++++++.|+||+|||+|++.+..
T Consensus 80 if~qS~~~---e~~el~~~l~~~~t~~~l~r~~~~k~k~~-~~~~~~g~l~YP~lqaaDil~~~~ 140 (328)
T TIGR00233 80 IFLQSDYP---EHYELAWLLSCQVTFGELKRMTQFKDKSQ-AENVPIGLFSYPVLQAADILLYQA 140 (328)
T ss_pred EEEcCCcH---HHHHHHHHHHccCCHHHHHhccCcchhcc-CCCCCchhhcchHHHHhhhhhcCC
Confidence 99999997 47777767999999999998899998853 366899999999999999997753
No 26
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.57 E-value=3.9e-15 Score=158.77 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=112.3
Q ss_pred chhHHHhhcccchhccccceeeeeccC-CCCceeeccCCCCCCcchhh-HhHHHHHHHHHHcCCceEEeecchhHHhhc-
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLVR-TPQTVYAGFDPTASSLHIGN-LLILINLIHWQRAGHQVIALMICLSQILWR- 283 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~s-ksl~~YiG~dpTa~~lHlGh-lmsil~lr~fq~~G~~~i~lIg~i~~~l~~- 283 (362)
++...|+++.+++. +.+++..++++ +++.+|.||+||+. +|+|| ++..+++..++..|++++++|+|+|++.++
T Consensus 5 e~~~ll~r~~~Evi--~~eeL~~ll~~~~~~rv~sGi~PTG~-lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~ 81 (682)
T PTZ00348 5 ERYKLLRSVGEECI--QESELRNLIEKKPLIRCYDGFEPSGR-MHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDK 81 (682)
T ss_pred HHHHHHhcCceeec--CHHHHHHHHhcCCCCEEEEeeCCCCc-CeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCC
Confidence 46778889988774 67788888764 57899999999995 99999 566677777778999999999998743320
Q ss_pred ------------------------CCCceEEEechhhhcCC--CHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcch
Q psy14958 284 ------------------------TCNEEAVVNNMSWYNSI--NVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYT 337 (362)
Q Consensus 284 ------------------------~~~~~~Iv~NsdW~~~~--~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~ 337 (362)
++++++|+.+|+|+... .|+.++-.+++++|++++.++-.+..+.+ .+++++
T Consensus 82 ~~~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~--~~i~~g 159 (682)
T PTZ00348 82 VGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTE--GTLTAA 159 (682)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccC--CCCchH
Confidence 25689999999999875 35555556999999999977544433322 358999
Q ss_pred hhhhhhHhHHhHHHHhhh
Q psy14958 338 EFSYQIFQSYDWAHLYKE 355 (362)
Q Consensus 338 Ef~YpllQayDf~~L~~~ 355 (362)
+|+||+|||+|++++..+
T Consensus 160 ll~YPvLQAADIl~l~ad 177 (682)
T PTZ00348 160 QVLYPLMQCADIFFLKAD 177 (682)
T ss_pred HHhhhHHHhhcccccCCC
Confidence 999999999999987654
No 27
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.54 E-value=1.4e-14 Score=143.19 Aligned_cols=113 Identities=14% Similarity=0.224 Sum_probs=90.8
Q ss_pred CceeeccCCCCCCcchhhHh-HHHHHHHHHHcCCceEEeecchhHHhh----------------------cCCCceEEEe
Q psy14958 236 QTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQVIALMICLSQILW----------------------RTCNEEAVVN 292 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlm-sil~lr~fq~~G~~~i~lIg~i~~~l~----------------------~~~~~~~Iv~ 292 (362)
..+|+|++||+. +|+||++ .+.+|+++|+. ++++++|+|+|++.+ -++++++|+.
T Consensus 2 ~~v~~G~~PTG~-lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~ 79 (333)
T PRK00927 2 KRVLSGIQPTGK-LHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFV 79 (333)
T ss_pred CEEEEeeCCCcc-chHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEE
Confidence 468999999997 9999999 77999999997 899999999874432 0367899999
Q ss_pred chhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhh-cCCCCcchhhhhhhHhHHhHHHHh
Q psy14958 293 NMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLE-SEHGMNYTEFSYQIFQSYDWAHLY 353 (362)
Q Consensus 293 NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~-~~~gis~~Ef~YpllQayDf~~L~ 353 (362)
+|+|.....+.-+ ++..++++++-+...++.+.. .++++++++|+||+|||+|++++.
T Consensus 80 qS~~~~~~el~~~---l~~~~~~~~l~r~~~~k~~~~~~~~~~~~g~~~YP~lQaaDil~~~ 138 (333)
T PRK00927 80 QSHVPEHAELAWI---LNCITPLGELERMTQFKDKSAKQKENVSAGLFTYPVLMAADILLYK 138 (333)
T ss_pred eCCCchhHHHHHH---HHhhhhHHHHHhhhhHHHHHhccCCCCCcHhhhcHHHHHHHHHhcC
Confidence 9999876555333 345778888877678887763 236789999999999999999863
No 28
>PLN02486 aminoacyl-tRNA ligase
Probab=99.49 E-value=5.1e-14 Score=141.83 Aligned_cols=166 Identities=13% Similarity=0.056 Sum_probs=125.8
Q ss_pred HHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhccccee
Q psy14958 33 LSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSN 106 (362)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (362)
+.+.|+...+|+|+.++.|+|| +||+|++. +++.||+.| |-. +
T Consensus 61 ~~~~l~~~e~~~~~~vYtG~~PSg~~lHlGHlv~~~---------------~~~~lQ~~~--~~~--------------~ 109 (383)
T PLN02486 61 LEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFM---------------FTKYLQDAF--KVP--------------L 109 (383)
T ss_pred HHHHHHHHhcCCCeEEEeCCCCCCccccHHHHHHHH---------------HHHHHHHhC--CCe--------------E
Confidence 3456666677999999999999 89999999 999999998 544 3
Q ss_pred EEEcCccccccCCCCCCcccCCCCHHHHH----HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHH
Q psy14958 107 GKIGGATAQVGDPSGKTKDRDKQDLATVQ----TNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVI 182 (362)
Q Consensus 107 ~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~----~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~ 182 (362)
+|+ |+|| ++..|+.+|.|++. +|++.|..+- || ++++.|.+|++|...+.+.
T Consensus 110 ~I~------iaD~--e~~~~~~~~~e~i~~~~~en~~~iiA~G---~d-------------p~kt~I~s~~~~~~~~~~~ 165 (383)
T PLN02486 110 VIQ------LTDD--EKFLWKNLSVEESQRLARENAKDIIACG---FD-------------VERTFIFSDFDYVGGAFYK 165 (383)
T ss_pred EEE------ecCH--HHHhhcCCCHHHHHHHHHHHHHHHHHhC---CC-------------CcceEEEeccHHHhHhHHH
Confidence 443 7799 88889999999994 4555544422 22 6789999999999888999
Q ss_pred HHHHHHHhhhhhhhhhhhc----c------------------------cC-----------ccchhHHHhhcccchhccc
Q psy14958 183 DFMNHIARLFRMGDMLKKQ----S------------------------VG-----------GSDQMGNIKAGHDLISKLY 223 (362)
Q Consensus 183 dfL~~lg~~f~v~~ML~Rd----~------------------------iG-----------GsDQ~~NI~rGrdLi~r~~ 223 (362)
++++ +++++|+++|.++. + .| |-||...+...|++.++..
T Consensus 166 ~~~~-l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~ 244 (383)
T PLN02486 166 NMVK-IAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLG 244 (383)
T ss_pred HHHH-HHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhC
Confidence 9998 99999999999883 1 14 5667777776788877542
Q ss_pred c--------ceeeeecc-----CCCCce-eeccCCCCCCcchhhHh
Q psy14958 224 G--------KTVFDLLV-----RTPQTV-YAGFDPTASSLHIGNLL 255 (362)
Q Consensus 224 g--------qeLp~LL~-----sksl~~-YiG~dpTa~~lHlGhlm 255 (362)
. ..+|.|.. |||..+ .|.+++||+++ ..+++
T Consensus 245 ~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i-~~KI~ 289 (383)
T PLN02486 245 YYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEI-KNKIN 289 (383)
T ss_pred CCCcceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHH-HHHHh
Confidence 2 12555542 778767 59999998776 44444
No 29
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=99.43 E-value=3.1e-13 Score=133.90 Aligned_cols=114 Identities=14% Similarity=0.169 Sum_probs=88.1
Q ss_pred CceeeccCCCCCCcchhhHhH-HHHHHHHHHcCCceEEeecchhHHhhc-----------------------CCCceEEE
Q psy14958 236 QTVYAGFDPTASSLHIGNLLI-LINLIHWQRAGHQVIALMICLSQILWR-----------------------TCNEEAVV 291 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlms-il~lr~fq~~G~~~i~lIg~i~~~l~~-----------------------~~~~~~Iv 291 (362)
..+|+|++||++ +|+||+++ +..|.++|++|+ ++++|+|+|++.+. ++++++|+
T Consensus 3 ~~v~sG~~PTG~-~HLGn~l~~~~~~~~lQ~~~~-~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~ 80 (333)
T PRK12282 3 PIILTGDRPTGK-LHLGHYVGSLKNRVALQNEHE-QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIF 80 (333)
T ss_pred CEEEEeeCCCCc-chHHHHHHHHHHHHHHHhCCC-EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEE
Confidence 368999999995 99999999 688889999997 78999998855420 36789999
Q ss_pred echhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhh---cCCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 292 NNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLE---SEHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 292 ~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~---~~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
.+|+|.....+..+ ++..++++++.+...++.... .+..++++.|+||+|||+|+.++..
T Consensus 81 ~qS~~~e~~~l~~~---l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~ 143 (333)
T PRK12282 81 IQSQIPELAELTMY---YMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKA 143 (333)
T ss_pred ECCcchHHHHHHHH---HHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCC
Confidence 99999653333222 445789999887788874321 1256799999999999999988643
No 30
>KOG2145|consensus
Probab=99.34 E-value=1.4e-12 Score=126.62 Aligned_cols=165 Identities=11% Similarity=0.182 Sum_probs=138.0
Q ss_pred cCCHHHHHHHHHhhhhhhhhhhh-cccCccchhHHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhH
Q psy14958 178 SINVIDFMNHIARLFRMGDMLKK-QSVGGSDQMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 178 ~m~~~dfL~~lg~~f~v~~ML~R-d~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlms 256 (362)
.+.+..+|..+|..---..++.| +.+.|...+..+.||..+.+|....-+....+.++...|.|-.||.++||+||++|
T Consensus 27 ~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kpFyLYTGRGpSS~smHlGHliP 106 (397)
T KOG2145|consen 27 GIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKPFYLYTGRGPSSESMHLGHLIP 106 (397)
T ss_pred CccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCceEEEeCCCCCccccccccchh
Confidence 78999999999987767777777 56999999999999999999876665666667899999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEe-ecchhHHhhc-----------------------CCCceEEEechhhhcC-CCHHHHHHHHHh
Q psy14958 257 LINLIHWQRAGHQVIAL-MICLSQILWR-----------------------TCNEEAVVNNMSWYNS-INVIDFMNHIAR 311 (362)
Q Consensus 257 il~lr~fq~~G~~~i~l-Ig~i~~~l~~-----------------------~~~~~~Iv~NsdW~~~-~~~~dfL~~vgk 311 (362)
+++.+|+|++-..|+++ +.|.++|+|. ++.++.|++|.++... ..|...++ |+|
T Consensus 107 FiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFsn~~y~g~~~fy~nivk-i~k 185 (397)
T KOG2145|consen 107 FIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFSNLDYMGGPAFYENIVK-ISK 185 (397)
T ss_pred HHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEechhhccCcHHHHHHHH-Hhh
Confidence 99999999999888766 4676666651 2568999999999986 56788898 999
Q ss_pred hccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhH
Q psy14958 312 LFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDW 349 (362)
Q Consensus 312 ~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf 349 (362)
.+|.|+... .|+ +. .+-.++++.+|..||.-.
T Consensus 186 ~vt~nqa~~--iFG--F~--~sd~igk~~Fpa~qaap~ 217 (397)
T KOG2145|consen 186 CVTLNQAKA--IFG--FT--DSDCIGKIGFPAIQAAPS 217 (397)
T ss_pred eechhhhee--eec--cC--CccccccccCchhhhccc
Confidence 999999876 555 32 234788999999998644
No 31
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=99.14 E-value=1.9e-10 Score=114.17 Aligned_cols=115 Identities=13% Similarity=0.190 Sum_probs=85.0
Q ss_pred CceeeccCCCCCCcchhhHhHHHH-HHHHH-HcCCceEEeecchhHHh--------------------hc--CCCceEEE
Q psy14958 236 QTVYAGFDPTASSLHIGNLLILIN-LIHWQ-RAGHQVIALMICLSQIL--------------------WR--TCNEEAVV 291 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlmsil~-lr~fq-~~G~~~i~lIg~i~~~l--------------------~~--~~~~~~Iv 291 (362)
..+|.|+.||+ .+|+||++..++ |.++| ..|++..+.|+|+|++- .- ++++++|+
T Consensus 4 ~~v~sGiqPTG-~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 4 KIMLTGIKPTG-YPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CEEEEEECCCC-cchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 47999999999 699999999655 76774 67888999999987421 10 37789999
Q ss_pred echhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhc--------CCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 292 NNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLES--------EHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 292 ~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~--------~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
.+|+.-... ++.-.++..++++++-+...+|..... +.+++++.|+||+|||+|++.+..
T Consensus 83 ~qS~v~~~~---eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~ 150 (332)
T PRK12556 83 RQSDVPEIF---ELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQA 150 (332)
T ss_pred ECCCchHHH---HHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccC
Confidence 999976542 222235677887777665555544321 235799999999999999998654
No 32
>KOG2144|consensus
Probab=99.13 E-value=5.1e-11 Score=115.83 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=109.1
Q ss_pred hhHHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhhc----
Q psy14958 208 QMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWR---- 283 (362)
Q Consensus 208 Q~~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~~---- 283 (362)
.+..|++..+++. ..+++..+|....+..|.|+.||+ -+|+|-+|+++++..|-.+|+.+.++++|+++|+++
T Consensus 9 k~~lItrnlqE~l--gee~lk~iL~er~l~~YwGtaptG-rpHiay~vpm~kiadflkAGC~VtIl~AD~hA~LdNmkap 85 (360)
T KOG2144|consen 9 KYKLITRNLQEVL--GEEELKNILAERALKCYWGTAPTG-RPHIAYFVPMMKIADFLKAGCEVTILFADLHAFLDNMKAP 85 (360)
T ss_pred HHHHHHHHHHHHh--CHHHHHHHHhccCceeeecCCCCC-CcceeeeeehhHHHHHHhcCCeEEEEehHHHHHHhcccch
Confidence 4567777777764 346788888778899999999999 599999999999999999999999999999876641
Q ss_pred ----------------------C--CCceEEEechhhhcCCCH-HHHHHHHHhhccHHHHHch-hHHHhhhhcCCCCcch
Q psy14958 284 ----------------------T--CNEEAVVNNMSWYNSINV-IDFMNHIARLFRMGDMLKK-QSVVTRLESEHGMNYT 337 (362)
Q Consensus 284 ----------------------~--~~~~~Iv~NsdW~~~~~~-~dfL~~vgk~~tl~~mL~r-d~~~~Rl~~~~gis~~ 337 (362)
| .++..++..+++..+..| +|.-+ +.+.+|-....+. -.+.+.. +..+++
T Consensus 86 ~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~r-l~~~~~~hdak~agaevvkqv---e~plls 161 (360)
T KOG2144|consen 86 DELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYR-LSSNVTQHDAKKAGAEVVKQV---ENPLLS 161 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHH-HHhhccHhHHHHhhhhHHHhh---cchhhh
Confidence 1 247889999999888777 57776 5555544444433 2333333 346999
Q ss_pred hhhhhhHhHHhHHHHhhh
Q psy14958 338 EFSYQIFQSYDWAHLYKE 355 (362)
Q Consensus 338 Ef~YpllQayDf~~L~~~ 355 (362)
.+.||.|||.|.++|.-+
T Consensus 162 ~llYP~MQalDe~~L~vD 179 (360)
T KOG2144|consen 162 GLLYPGMQALDEFYLEVD 179 (360)
T ss_pred hhhhhhHHHhhHHHHhhh
Confidence 999999999999999753
No 33
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=99.11 E-value=1.9e-10 Score=111.34 Aligned_cols=122 Identities=13% Similarity=0.065 Sum_probs=100.1
Q ss_pred eEEeeeCC-----Ccchhh-hhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCCC
Q psy14958 47 ISRYKLSP-----CGHLLA-ENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPS 120 (362)
Q Consensus 47 ~~~~g~dp-----~gh~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPS 120 (362)
+++.|++| +||++. +. ++..+|++| |.+ +++|+|.+|++++|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~---------------~~~~lQ~ag--~~~--------------~~~IaD~ha~t~~~- 48 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFR---------------FWVWLQEAG--YEL--------------FFFIADLHALTVKQ- 48 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHH---------------HHHHHHhCC--CCE--------------EEEecchHHHhCCC-
Confidence 47889999 899998 87 899999998 998 79999999999876
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhhhh
Q psy14958 121 GKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKK 200 (362)
Q Consensus 121 Gr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~R 200 (362)
++.+++.+|+..+..++..+-- +|+++.|..||+|.. ..+..-.++++.++++|.+.
T Consensus 49 --------~~~~~~~~~~~~~~~~~lA~G~------------dp~k~~i~~qS~~~~---~~~l~~~l~~~~~~~~l~r~ 105 (280)
T cd00806 49 --------LDPEELRQNTRENAKDYLACGL------------DPEKSTIFFQSDVPE---HYELAWLLSCVVTFGELERM 105 (280)
T ss_pred --------CCHHHHHHHHHHHHHHHHHcCC------------CcccCEEEEcCCcHH---HHHHHHHHhCcCCHHHHHhc
Confidence 8889999999999888877521 267899999999993 44444448899999987533
Q ss_pred c----------------------------------ccCccchhHHHhhcccchhccc
Q psy14958 201 Q----------------------------------SVGGSDQMGNIKAGHDLISKLY 223 (362)
Q Consensus 201 d----------------------------------~iGGsDQ~~NI~rGrdLi~r~~ 223 (362)
. ..+|.||+.++..+|++.++..
T Consensus 106 ~~fk~~~~~~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n 162 (280)
T cd00806 106 TGFKDKSAQGESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFN 162 (280)
T ss_pred cchhhhhccCCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhc
Confidence 1 1389999999999999998643
No 34
>PLN02886 aminoacyl-tRNA ligase
Probab=99.11 E-value=2.6e-10 Score=115.30 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=85.4
Q ss_pred CceeeccCCCCCCcchhhHh-HHHHHHHHHHcCCceEEeecchhHHhh----------------------cCCCceEEEe
Q psy14958 236 QTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQVIALMICLSQILW----------------------RTCNEEAVVN 292 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlm-sil~lr~fq~~G~~~i~lIg~i~~~l~----------------------~~~~~~~Iv~ 292 (362)
..+|.|+.||+ .+|+||++ .+..|.++|+ +++..+.|+|+|++.. -+++++.|+.
T Consensus 47 ~~v~sGiqPSG-~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~ 124 (389)
T PLN02886 47 KRVVSGVQPTG-SIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFV 124 (389)
T ss_pred CeEEEEECCCC-ccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEE
Confidence 56999999999 69999999 5788999999 8899999999874331 0367899999
Q ss_pred chhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhc--CCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 293 NMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLES--EHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 293 NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~--~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
.|+--....+ +.- ++..++++++-+.-.+|.+... .+.++++.|+||+|||.|+++...
T Consensus 125 QS~v~e~~eL--~wi-l~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~a 185 (389)
T PLN02886 125 QSHVPAHAEL--MWL-LSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQA 185 (389)
T ss_pred eCCCchhHHH--HHH-HHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcCC
Confidence 9985443333 222 4556777777666556544321 246899999999999999998643
No 35
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.11 E-value=2.9e-10 Score=114.26 Aligned_cols=165 Identities=13% Similarity=0.105 Sum_probs=129.2
Q ss_pred HHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEE
Q psy14958 35 PLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKI 109 (362)
Q Consensus 35 ~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lI 109 (362)
.+++...+|+|+.++.|++| +||++++. +++.+|+.| +.+ +++|
T Consensus 56 ~il~~~~~~~~~~iytG~~PSG~lHLGh~~~~~---------------~~~~lQ~~g--~~~--------------~i~I 104 (368)
T PRK12285 56 KILEAYRNGKPFAVYTGFMPSGPMHIGHKMVFD---------------ELKWHQEFG--ANV--------------YIPI 104 (368)
T ss_pred HHHHHHhcCCCeEEEEccCCCCCccHHHHHHHH---------------HHHHHHhcC--CCE--------------EEEe
Confidence 45555567899999999999 89999888 899999987 888 7999
Q ss_pred cCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHH
Q psy14958 110 GGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHI 188 (362)
Q Consensus 110 Gg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~l 188 (362)
+|.+|. ..| .++.|++++|+..+..++..+ +| ++++.|+.||+|.. +.++.-.+
T Consensus 105 aD~ha~--------~~~-~~~~e~~~~~~~~~~~~~lA~G~D-------------p~k~~i~~qS~~~~---~~~l~~~l 159 (368)
T PRK12285 105 ADDEAY--------AAR-GLSWEETREWAYEYILDLIALGFD-------------PDKTEIYFQSENIK---VYDLAFEL 159 (368)
T ss_pred cchHHH--------hcC-CCCHHHHHHHHHHHHHHHHHhCCC-------------ccceEEEECCchHH---HHHHHHHH
Confidence 999996 345 589999999999888777765 43 78899999999985 77777779
Q ss_pred Hhhhhhhhhhhhc----c------------------------------cCccchhHHHhhcccchhcc---ccce-----
Q psy14958 189 ARLFRMGDMLKKQ----S------------------------------VGGSDQMGNIKAGHDLISKL---YGKT----- 226 (362)
Q Consensus 189 g~~f~v~~ML~Rd----~------------------------------iGGsDQ~~NI~rGrdLi~r~---~gqe----- 226 (362)
++++|+++|-+.- + .+|.||..++...|++.++. ++-.
T Consensus 160 ~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l 239 (368)
T PRK12285 160 AKKVNFSELKAIYGFTGETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSST 239 (368)
T ss_pred HhhCcHHHHHHhhCCCCCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhH
Confidence 9999999986551 1 29999999999999988764 1211
Q ss_pred ----eeeec---cCCCC-ceeeccCCCCCCcchhhHhH
Q psy14958 227 ----VFDLL---VRTPQ-TVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 227 ----Lp~LL---~sksl-~~YiG~dpTa~~lHlGhlms 256 (362)
+|.|- +|||. +++|.+++|++++ .-+++.
T Consensus 240 ~~~~lpgL~G~KMSkS~~~s~I~L~D~p~~I-~kKI~k 276 (368)
T PRK12285 240 YHKFMPGLTGGKMSSSKPESAIYLTDDPETV-KKKIMK 276 (368)
T ss_pred hhhcccCCCCCcCCCCCCCCeeeccCCHHHH-HHHHHh
Confidence 33333 26664 6789999988776 444443
No 36
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.02 E-value=6.7e-10 Score=113.51 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=85.1
Q ss_pred CCceeeccCCCCCCcchhhHhHHH-HHHHHH-HcCCceEEeecchhHHhh--------------------c--CCCceEE
Q psy14958 235 PQTVYAGFDPTASSLHIGNLLILI-NLIHWQ-RAGHQVIALMICLSQILW--------------------R--TCNEEAV 290 (362)
Q Consensus 235 sl~~YiG~dpTa~~lHlGhlmsil-~lr~fq-~~G~~~i~lIg~i~~~l~--------------------~--~~~~~~I 290 (362)
++.+|.|+.||+ .+|+||++..+ .|..+| ..|++..+.|+|+|++.+ - +|++++|
T Consensus 2 ~~rvlSGiqPTG-~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~i 80 (431)
T PRK12284 2 TTRVLTGITTTG-TPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTF 80 (431)
T ss_pred ceEEEEEecCCC-cchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 367999999999 59999999976 466665 579999999999873321 1 3778999
Q ss_pred EechhhhcCCCH-HHHHHHHHhhccHHHHHch-hHHHhhhh----cCCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 291 VNNMSWYNSINV-IDFMNHIARLFRMGDMLKK-QSVVTRLE----SEHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 291 v~NsdW~~~~~~-~dfL~~vgk~~tl~~mL~r-d~~~~Rl~----~~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
+..|+--..-.+ |.+.. +...-+++||-.- +...+... .+++++++.|+||+|||.|++.+..
T Consensus 81 f~QSdvpeh~EL~wiL~~-it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~a 149 (431)
T PRK12284 81 YRQSDIPEIPELTWLLTC-VAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNA 149 (431)
T ss_pred EECCcchhHHHHHHHHHh-hhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCC
Confidence 999998766555 44444 6767777777421 22211111 1245899999999999999998764
No 37
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.92 E-value=1.6e-09 Score=107.42 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=112.6
Q ss_pred eEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCCC
Q psy14958 47 ISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPS 120 (362)
Q Consensus 47 ~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPS 120 (362)
+++.|++| +||.+ +++ |+..+|+. |++ +++|+|.+|++++
T Consensus 3 ~v~~G~~PTG~lHLG~~~g~~~---------------~~~~lQ~~---~~~--------------~~~IaD~ha~t~~-- 48 (333)
T PRK00927 3 RVLSGIQPTGKLHLGNYLGAIK---------------NWVELQDE---YEC--------------FFCIADLHALTVP-- 48 (333)
T ss_pred EEEEeeCCCccchHHhHHHHHH---------------HHHHHHhc---CCe--------------EEEEecHHHHhCC--
Confidence 68999999 89988 666 88889984 677 7999999999972
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhhh
Q psy14958 121 GKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLK 199 (362)
Q Consensus 121 Gr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~ 199 (362)
.+.+++.+|+..+..++..+ +| |++++|+.||+|.....+.-++..+....++.+|..
T Consensus 49 --------~~~~~i~~~~~~~~~~~lA~GlD-------------p~k~~if~qS~~~~~~el~~~l~~~~~~~~l~r~~~ 107 (333)
T PRK00927 49 --------QDPEELRENTRELAADYLACGID-------------PEKSTIFVQSHVPEHAELAWILNCITPLGELERMTQ 107 (333)
T ss_pred --------CCHHHHHHHHHHHHHHHHeEccC-------------hhheEEEEeCCCchhHHHHHHHHhhhhHHHHHhhhh
Confidence 26799999998888776654 33 788999999999887655555443333333444432
Q ss_pred ------h--c------------------------ccCccchhHHHhhcccchhccc---c--------------ceeeee
Q psy14958 200 ------K--Q------------------------SVGGSDQMGNIKAGHDLISKLY---G--------------KTVFDL 230 (362)
Q Consensus 200 ------R--d------------------------~iGGsDQ~~NI~rGrdLi~r~~---g--------------qeLp~L 230 (362)
+ + ..||.||..++...|++.++.. + ..+|.|
T Consensus 108 ~k~~~~~~~~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL 187 (333)
T PRK00927 108 FKDKSAKQKENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGL 187 (333)
T ss_pred HHHHHhccCCCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCC
Confidence 1 1 1499999999999999887631 1 013333
Q ss_pred c-----cCCCCc---eeeccCCCCCCcchhhHhHH
Q psy14958 231 L-----VRTPQT---VYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 231 L-----~sksl~---~YiG~dpTa~~lHlGhlmsi 257 (362)
- +|||.+ ++|.++++++++ ..+++..
T Consensus 188 ~g~~~KMSKS~~~~~~~I~l~D~~~~I-~~KI~~a 221 (333)
T PRK00927 188 DGPTKKMSKSDPNDNNTINLLDDPKTI-AKKIKKA 221 (333)
T ss_pred CCCCCCCCCCCCCCCCeEEeeCCHHHH-HHHHHhC
Confidence 2 277777 899999999877 6666654
No 38
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.87 E-value=9.8e-09 Score=104.18 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=82.0
Q ss_pred CceeeccCCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecchhHHhh---------------------c--CCCceEEE
Q psy14958 236 QTVYAGFDPTASSLHIGNLLIL-INLIHWQRAGHQVIALMICLSQILW---------------------R--TCNEEAVV 291 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~i~~~l~---------------------~--~~~~~~Iv 291 (362)
-.+|.|+.||+ .+|+||++.+ ..|..+|. +++..+.|+|+|++.+ - +|++++|+
T Consensus 3 ~~v~sGiqPSG-~~HLGnylG~ik~wv~lq~-~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if 80 (398)
T PRK12283 3 DRVLSGMRPTG-RLHLGHYHGVLKNWVKLQH-EYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLF 80 (398)
T ss_pred cEEEEEeCCCC-cchHHHHHHHHHHHHHHhc-CCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 35899999999 6999998876 55566666 7788999999875432 0 36789999
Q ss_pred echhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhc---CCCCcchhhhhhhHhHHhHHHHh
Q psy14958 292 NNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLES---EHGMNYTEFSYQIFQSYDWAHLY 353 (362)
Q Consensus 292 ~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~---~~gis~~Ef~YpllQayDf~~L~ 353 (362)
..|+--.... ..+. ++..++++++.+.-.+|..... ++.++++-|+||+|||.|++...
T Consensus 81 ~QS~v~eh~e--L~wi-l~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~ 142 (398)
T PRK12283 81 IQSKVPEHAE--LHLL-LSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYR 142 (398)
T ss_pred ECCCchHHHH--HHHH-HHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcC
Confidence 9988843321 1222 4557888887666667555432 35679999999999999998854
No 39
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1e-07 Score=94.15 Aligned_cols=115 Identities=13% Similarity=0.165 Sum_probs=89.8
Q ss_pred CCCceeeccCCCCCCcchhhHhHHHHHHHHHHcC-CceEEeecchhHHh----------------------hc--CCCce
Q psy14958 234 TPQTVYAGFDPTASSLHIGNLLILINLIHWQRAG-HQVIALMICLSQIL----------------------WR--TCNEE 288 (362)
Q Consensus 234 ksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G-~~~i~lIg~i~~~l----------------------~~--~~~~~ 288 (362)
++..+|.|+-||++ ||+||++..+..++.+..+ .+..+.|+|+|++. .- +++++
T Consensus 4 ~~~~vlSG~~PSG~-lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~ 82 (314)
T COG0180 4 KKFRVLSGIQPSGK-LHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKS 82 (314)
T ss_pred CCceEEecCCCCCC-cchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcccc
Confidence 46789999999996 9999999998888888888 59999999976321 11 37789
Q ss_pred EEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhc-CCCCcchhhhhhhHhHHhHHHH
Q psy14958 289 AVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLES-EHGMNYTEFSYQIFQSYDWAHL 352 (362)
Q Consensus 289 ~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~-~~gis~~Ef~YpllQayDf~~L 352 (362)
.|+.+|+--... +.-=.++..++++.|.+--.||..... +.+++++-|.||++||.|+++-
T Consensus 83 ~if~QS~v~e~~---eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAADILl~ 144 (314)
T COG0180 83 TIFLQSEVPEHA---ELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAADILLY 144 (314)
T ss_pred EEEEccCchHHH---HHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHHHHHhhhc
Confidence 999999887622 222236778999999888777765542 2368899999999999999873
No 40
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=98.59 E-value=1.9e-07 Score=92.67 Aligned_cols=157 Identities=12% Similarity=0.096 Sum_probs=112.6
Q ss_pred CcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccC
Q psy14958 44 TQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGD 118 (362)
Q Consensus 44 ~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGD 118 (362)
+|.+++.|++| +||.+... |.+.+|+.| +.+ +++|+|..|++++
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~---------------~~~~~~q~~--~~~--------------~i~IaD~ha~t~~ 49 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAI---------------QTKWLQQFG--VEL--------------FICIADLHAITVK 49 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHH---------------HHHHHHhCC--CCE--------------EEEeecchhhcCC
Confidence 47899999999 89988888 888888888 888 7999999999988
Q ss_pred CCCCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhh
Q psy14958 119 PSGKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDM 197 (362)
Q Consensus 119 PSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~M 197 (362)
++ + .++.+..|.+.+...+..+ +| |++++|..+|+|. .+.++.-.++++.++++|
T Consensus 50 ~~-~-------~~~~~~~~~~~~~~~~lA~GlD-------------p~k~~if~qS~~~---e~~el~~~l~~~~t~~~l 105 (328)
T TIGR00233 50 DN-T-------DPDALRKAREELAADILAVGLD-------------PKKTFIFLQSDYP---EHYELAWLLSCQVTFGEL 105 (328)
T ss_pred CC-C-------CHHHHHHHHHHHHHHHHHhCcC-------------hhheEEEEcCCcH---HHHHHHHHHHccCCHHHH
Confidence 74 2 2345566665543333332 22 7899999999998 377777679999999997
Q ss_pred hhhc---------------------------------ccCccchhHHHhhcccchhcccc---c-----------eeeee
Q psy14958 198 LKKQ---------------------------------SVGGSDQMGNIKAGHDLISKLYG---K-----------TVFDL 230 (362)
Q Consensus 198 L~Rd---------------------------------~iGGsDQ~~NI~rGrdLi~r~~g---q-----------eLp~L 230 (362)
.... ..+|.||...+...|++.++... . .+|.+
T Consensus 106 ~r~~~~k~k~~~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l 185 (328)
T TIGR00233 106 KRMTQFKDKSQAENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRL 185 (328)
T ss_pred HhccCcchhccCCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCC
Confidence 5321 13999999999999998875431 0 11222
Q ss_pred c------cCCCCce-eeccCCCCCCcchhhHhH
Q psy14958 231 L------VRTPQTV-YAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 231 L------~sksl~~-YiG~dpTa~~lHlGhlms 256 (362)
. +|||..+ +|.+++|++++ ..+++.
T Consensus 186 ~gl~~~KMSKS~~~s~I~L~D~~e~I-~~KI~~ 217 (328)
T TIGR00233 186 MGLSGKKMSKSDPNSAIFLTDTPKQI-KKKIRK 217 (328)
T ss_pred CCCCCCcCCCCCCCCeEeecCCHHHH-HHHHHh
Confidence 1 1667665 88888887766 444443
No 41
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=98.10 E-value=7.4e-06 Score=81.65 Aligned_cols=155 Identities=11% Similarity=0.118 Sum_probs=99.6
Q ss_pred ceEEeeeCC-----Ccchhh-hhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCC
Q psy14958 46 GISRYKLSP-----CGHLLA-ENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDP 119 (362)
Q Consensus 46 ~~~~~g~dp-----~gh~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDP 119 (362)
-++..|++| +||.+. +. +...+|+.| + + +++|+|.+|+++++
T Consensus 3 ~~v~sG~~PTG~~HLGn~l~~~~---------------~~~~lQ~~~--~-~--------------~i~IaD~ha~~~~~ 50 (333)
T PRK12282 3 PIILTGDRPTGKLHLGHYVGSLK---------------NRVALQNEH--E-Q--------------FVLIADQQALTDNA 50 (333)
T ss_pred CEEEEeeCCCCcchHHHHHHHHH---------------HHHHHHhCC--C-E--------------EEEEccchhHhCCC
Confidence 478899999 899888 44 677899998 5 5 68999999999853
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhh-
Q psy14958 120 SGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDML- 198 (362)
Q Consensus 120 SGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML- 198 (362)
.+.+++.+|+..+...+..+ +. +|+++.|+.+|+|..-..+..++. ...++++|-
T Consensus 51 ---------~~~~~i~~~~~~~~~~~lA~----------G~--dp~k~~i~~qS~~~e~~~l~~~l~---~~~~~~~l~r 106 (333)
T PRK12282 51 ---------KNPEKIRRNILEVALDYLAV----------GI--DPAKSTIFIQSQIPELAELTMYYM---NLVTVARLER 106 (333)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHh----------Cc--ChhHeEEEECCcchHHHHHHHHHH---hhchHHHHhh
Confidence 35667777765443333322 11 278899999999855332222222 222333221
Q ss_pred --------h-h---c------------------------ccCccchhHHHhhcccchhccc---cc--------------
Q psy14958 199 --------K-K---Q------------------------SVGGSDQMGNIKAGHDLISKLY---GK-------------- 225 (362)
Q Consensus 199 --------~-R---d------------------------~iGGsDQ~~NI~rGrdLi~r~~---gq-------------- 225 (362)
. + + ..||.||..++..-|++..+.. +.
T Consensus 107 ~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~ 186 (333)
T PRK12282 107 NPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAG 186 (333)
T ss_pred chHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCC
Confidence 1 1 1 1499999998888887766432 21
Q ss_pred eeeeec----cCCCCceeeccCCCCCCcchhhHhHH
Q psy14958 226 TVFDLL----VRTPQTVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 226 eLp~LL----~sksl~~YiG~dpTa~~lHlGhlmsi 257 (362)
-+|.|- +|||-+++|.+++|++++ ..+++..
T Consensus 187 ~i~~L~g~~KMSKS~~~~I~L~D~pe~I-~kKI~~A 221 (333)
T PRK12282 187 RLPGLDGKAKMSKSLGNAIYLSDDADTI-KKKVMSM 221 (333)
T ss_pred cccCCCCCCcCCCCCCCeeeeeCCHHHH-HHHHHhC
Confidence 122332 277778899999988877 5555543
No 42
>KOG2713|consensus
Probab=97.58 E-value=0.00015 Score=71.22 Aligned_cols=117 Identities=19% Similarity=0.299 Sum_probs=80.1
Q ss_pred CCCceeeccCCCCCCcchhhHh-HHHHHHHHHHcCCc---eEEeecchh------------H--------Hhh-c-CCCc
Q psy14958 234 TPQTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQ---VIALMICLS------------Q--------ILW-R-TCNE 287 (362)
Q Consensus 234 ksl~~YiG~dpTa~~lHlGhlm-sil~lr~fq~~G~~---~i~lIg~i~------------~--------~l~-~-~~~~ 287 (362)
.+..++.|+-||+ ..|+||++ ++-.|-.+|+.-.+ .+..|.|.| + ++. + ++++
T Consensus 12 ~~~rvfSGIQPTG-~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~K 90 (347)
T KOG2713|consen 12 PPKRVFSGIQPTG-IPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEK 90 (347)
T ss_pred CcceeEeccCCCC-CchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCccc
Confidence 3578999999999 79999955 57999999998776 666777754 1 111 1 3678
Q ss_pred eEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhh--cCCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 288 EAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLE--SEHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 288 ~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~--~~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
..++..|+--....+. +| ++...|++++-+-.-+|.... .-...+++=|+||+|||.|+.--..
T Consensus 91 s~lF~QS~Vpqh~el~-Wl--Lsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYks 156 (347)
T KOG2713|consen 91 SSLFVQSDVPQHAELS-WL--LSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKS 156 (347)
T ss_pred ceeeeeccchHHHHHH-HH--HHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhcc
Confidence 8888777654433332 22 355666666655555665543 1134699999999999999975433
No 43
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=96.70 E-value=0.0022 Score=64.10 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=36.6
Q ss_pred cCccchhHHHhhcccchhccc---cc--------------eeeeec---cCCCCceeeccCCCCCCcchhhHhHH
Q psy14958 203 VGGSDQMGNIKAGHDLISKLY---GK--------------TVFDLL---VRTPQTVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 203 iGGsDQ~~NI~rGrdLi~r~~---gq--------------eLp~LL---~sksl~~YiG~dpTa~~lHlGhlmsi 257 (362)
.+|.||...+...|++..+.. ++ -+|.|- .|||.+++|.+.++++.+ ..+++..
T Consensus 154 pvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~D~p~~I-~kKI~ka 227 (332)
T PRK12556 154 PVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLFAEQEKL-RKLIFKI 227 (332)
T ss_pred EeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCcccccCCHHHH-HHHHHHh
Confidence 499999999988888766431 11 122222 378888899999888776 5566553
No 44
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.41 E-value=0.0061 Score=52.72 Aligned_cols=37 Identities=24% Similarity=0.539 Sum_probs=30.1
Q ss_pred eeeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 238 VYAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 238 ~YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
.|+|.+|++ ++|+||+.++ ..-|+++..|+++..+.+
T Consensus 2 ~~~~p~~~~-~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~ 42 (143)
T cd00802 2 TFSGITPNG-YLHIGHLRTIVTFDFLAQAYRKLGYKVRCIAL 42 (143)
T ss_pred EecCCCCCC-CccHhHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 478999999 6999999887 677888888988766543
No 45
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.06 E-value=0.027 Score=48.69 Aligned_cols=111 Identities=25% Similarity=0.350 Sum_probs=70.4
Q ss_pred EEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCCCCC
Q psy14958 48 SRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGK 122 (362)
Q Consensus 48 ~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr 122 (362)
...|.+| +||+...- ..++ =.|.+...| ++|. .+.-++|.+..||+|+.+
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~--~~d~---------~~r~lr~~G--~~v~------------~~~~~dd~~~~~~~~a~~ 56 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIV--TFDF---------LAQAYRKLG--YKVR------------CIALIDDAGGLIGDPANK 56 (143)
T ss_pred EecCCCCCCCccHhHHHHHH--HHHH---------HHHHHHHcC--CCeE------------EEeeeCCCchHHHHHHHh
Confidence 3567777 78875432 1111 123445566 6662 367899999999999976
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhhhhcc
Q psy14958 123 TKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQS 202 (362)
Q Consensus 123 ~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~Rd~ 202 (362)
. ....++-+..|.+.+++++. |.- +...++.. .+..+ ---.
T Consensus 57 ~---~~~~~~~~~~~~~~~~~~~~----------------------------y~~-~~~a~~~~-~~~~~------~~i~ 97 (143)
T cd00802 57 K---GENAKAFVERWIERIKEDVE----------------------------YMF-LQAADFLL-LYETE------CDIH 97 (143)
T ss_pred c---CCCHHHHHHHHHHHHHHHHH----------------------------HHH-HHHHHHHH-HhhCC------cEEE
Confidence 5 35566777888888887665 222 22223222 12111 1236
Q ss_pred cCccchhHHHhhcccchhcc
Q psy14958 203 VGGSDQMGNIKAGHDLISKL 222 (362)
Q Consensus 203 iGGsDQ~~NI~rGrdLi~r~ 222 (362)
+||.||+.+...+.++.++.
T Consensus 98 ~~G~Dq~~h~~~~~~i~~~~ 117 (143)
T cd00802 98 LGGSDQLGHIELGLELLKKA 117 (143)
T ss_pred EechhHHHHHHHHHHHHHHh
Confidence 89999999999999988754
No 46
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.85 E-value=0.09 Score=54.63 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=93.3
Q ss_pred cceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCC
Q psy14958 45 QGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDP 119 (362)
Q Consensus 45 ~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDP 119 (362)
+++|.-|+.| +||.+-.. +.|+ +..++.| +.+ .+.|-|..|++ .|
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGai--k~~v-----------~lq~q~~--~~~--------------~~~IADlHAlT-~~ 51 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAI--RPAI-----------AASRQPG--VES--------------FYFLADYHALI-KC 51 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHH--HHHH-----------HHHHhCC--CcE--------------EEEeechhhcc-CC
Confidence 4789999999 67755432 2333 3333456 777 79999999998 22
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhh-
Q psy14958 120 SGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDML- 198 (362)
Q Consensus 120 SGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML- 198 (362)
.+.+++.+|...+... ++. -+ =+|++.+|...|+=-..-.+.=.|..+.+.-++++|=
T Consensus 52 ---------~dp~~lr~~~~e~aa~---~LA-------~G--lDPek~~if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q 110 (431)
T PRK12284 52 ---------DDPARIQRSTLEIAAT---WLA-------AG--LDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHA 110 (431)
T ss_pred ---------CCHHHHHHHHHHHHHH---HHH-------hC--CCccceEEEECCcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 2446777777554322 221 11 1377888888887543322222233344444444441
Q ss_pred ------------------------------hhcc--------cCccchhHHHhhcccchhcc---ccce-----------
Q psy14958 199 ------------------------------KKQS--------VGGSDQMGNIKAGHDLISKL---YGKT----------- 226 (362)
Q Consensus 199 ------------------------------~Rd~--------iGGsDQ~~NI~rGrdLi~r~---~gqe----------- 226 (362)
+-|. -.|-||...+...|++.++. ++.+
T Consensus 111 ~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~ 190 (431)
T PRK12284 111 YKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEE 190 (431)
T ss_pred HHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCcccccc
Confidence 1110 28999999999888887653 2211
Q ss_pred ----eeeec---cCCCCceeeccCCCCCCcchhhHhHH
Q psy14958 227 ----VFDLL---VRTPQTVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 227 ----Lp~LL---~sksl~~YiG~dpTa~~lHlGhlmsi 257 (362)
++.|- +|||.++.|.+.++++.+ .-+++..
T Consensus 191 ~~~~I~gLdg~KMSKS~~n~I~L~Ds~~~I-~kKI~~A 227 (431)
T PRK12284 191 SVATLPGLDGRKMSKSYDNTIPLFAPREEL-KKAIFSI 227 (431)
T ss_pred ccccccCCCCccccCCCCCEeeecCCHHHH-HHHHhcC
Confidence 22221 377888888887777655 3344443
No 47
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=79.04 E-value=7 Score=41.71 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=54.2
Q ss_pred CCceeeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeecc-----hh-----------HHhh------------
Q psy14958 235 PQTVYAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMIC-----LS-----------QILW------------ 282 (362)
Q Consensus 235 sl~~YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~-----i~-----------~~l~------------ 282 (362)
..-+=.|+.|++ ..|+||+.-+ +.-|++...|+++..+-+. ++ +|+-
T Consensus 19 ~~~~~tg~~psG-~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 19 LYTVASGITPSG-HIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred eEEEecCCCCCC-CccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 345667888988 5999998776 7889999999887776654 11 1221
Q ss_pred -----------------cCCCceEEEechhhhcCCCHHHHHHHHH
Q psy14958 283 -----------------RTCNEEAVVNNMSWYNSINVIDFMNHIA 310 (362)
Q Consensus 283 -----------------~~~~~~~Iv~NsdW~~~~~~~dfL~~vg 310 (362)
.-.-+.+++.+++.|++-.|.+.++.+.
T Consensus 98 ~~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~L 142 (515)
T TIGR00467 98 KTSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIAL 142 (515)
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHHH
Confidence 0012689999999999988888887433
No 48
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=68.46 E-value=5.8 Score=36.77 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=27.6
Q ss_pred eeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEee
Q psy14958 239 YAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALM 274 (362)
Q Consensus 239 YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lI 274 (362)
|.+-.|++ .+|+||+-+. ..-|+++..|++++..-
T Consensus 6 ~~spN~~~-~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~ 44 (212)
T cd00671 6 FVSANPTG-PLHVGHLRNAIIGDSLARILEFLGYDVTREY 44 (212)
T ss_pred ecCCCCCC-CccccccHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 44456766 5999998885 78899999999987553
No 49
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=60.87 E-value=10 Score=39.55 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=34.0
Q ss_pred CCCCcee-eccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 233 RTPQTVY-AGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 233 sksl~~Y-iG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
.+..++| +|-.|.+ .+|+||+.+. +.-|+++..|+++..+.|
T Consensus 21 ~~~v~~yvcgPtvy~-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~ 67 (463)
T PRK00260 21 PGKVKMYVCGPTVYD-YAHIGHARSFVVFDVLRRYLRYLGYKVTYVRN 67 (463)
T ss_pred CCcceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCceEEeec
Confidence 3456788 7877766 5999998775 888999999999888777
No 50
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=58.02 E-value=11 Score=39.65 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=28.1
Q ss_pred eeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEee
Q psy14958 239 YAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALM 274 (362)
Q Consensus 239 YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lI 274 (362)
|+|-.|+++ +|+||+-+. ..-|+++..|++++.+-
T Consensus 117 ~~spnp~g~-lHiGH~R~~iigD~laR~lr~~G~~V~~~~ 155 (507)
T PRK01611 117 YVSANPTGP-LHVGHLRSAVIGDALARILEFAGYDVTREY 155 (507)
T ss_pred ecCCCCCCC-CcCCchHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 445678774 999999886 78889999999987763
No 51
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=55.31 E-value=52 Score=34.25 Aligned_cols=79 Identities=10% Similarity=0.000 Sum_probs=47.7
Q ss_pred cceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCC
Q psy14958 45 QGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDP 119 (362)
Q Consensus 45 ~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDP 119 (362)
|-+|.-|+-| +||.+... +.|+ ++|+ | ..+ .+.|=|.-|+.-++
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~i--k~wv------------~lq~-~--~~~--------------~~~IADlHAlt~~~ 50 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVL--KNWV------------KLQH-E--YEC--------------FFFVADWHALTTHY 50 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHH--HHHH------------HHhc-C--CcE--------------EEEeecHHHHhCCC
Confidence 3568899999 56655432 3343 3444 3 455 68888988887432
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhh
Q psy14958 120 SGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSW 175 (362)
Q Consensus 120 SGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~W 175 (362)
.+.+++.+|+..+...+... +. +|++++|...|+=
T Consensus 51 ---------~d~~~ir~~~~~~~a~~lA~----------Gl--DP~k~~if~QS~v 85 (398)
T PRK12283 51 ---------ETPEVIEKNVWDMVIDWLAA----------GV--DPAQATLFIQSKV 85 (398)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHc----------CC--CccceEEEECCCc
Confidence 36778888875543322221 11 3777888877764
No 52
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=48.56 E-value=19 Score=36.72 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=29.3
Q ss_pred eccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 240 AGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 240 iG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.|+.|++ .+|+||+..+ +.-|++...|+++..+.|.
T Consensus 25 tgi~psG-~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~ 64 (353)
T cd00674 25 SGISPSG-HIHIGNFREVITADLVARALRDLGFEVRLIYSW 64 (353)
T ss_pred cCCCCCC-CcccCccHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 4887777 6999998876 8889999999988777663
No 53
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=48.24 E-value=28 Score=32.75 Aligned_cols=43 Identities=21% Similarity=0.117 Sum_probs=31.0
Q ss_pred CCCCceeeccCCCC-CCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 233 RTPQTVYAGFDPTA-SSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 233 sksl~~YiG~dpTa-~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.+..++|+-- ||+ +++|+||+-+. +.-||+...|.++....|-
T Consensus 18 ~~~~~~y~~g-pt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~ 65 (213)
T cd00672 18 PGLVTMYVCG-PTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNI 65 (213)
T ss_pred CCCceEEEeC-CccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeec
Confidence 3456777632 333 35999998776 7888999999988777764
No 54
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=46.07 E-value=23 Score=36.23 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=24.5
Q ss_pred CCCCCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 244 PTASSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 244 pTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
|.+ .+|+||+.+. ..-||.+..|+++..+-|.
T Consensus 10 ~Ng-~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGt 45 (391)
T PF09334_consen 10 PNG-DLHLGHLYPYLAADVLARYLRLRGHDVLFVTGT 45 (391)
T ss_dssp TSS-S-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CCC-CCCCChhHHHHHHHHHHHHHhhcccceeeEEec
Confidence 555 4999998887 7789999999998888775
No 55
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=44.30 E-value=98 Score=33.42 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=63.8
Q ss_pred CCceeeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe-ecc----hh-------------HHhh----------
Q psy14958 235 PQTVYAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL-MIC----LS-------------QILW---------- 282 (362)
Q Consensus 235 sl~~YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l-Ig~----i~-------------~~l~---------- 282 (362)
...+-.|+.||+ .+|+||+--+ +.-+-|.+.|+.+-.+ +.| ++ +|+.
T Consensus 20 ~~~v~tGisPSG-~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 20 EYVVATGISPSG-LIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred cEEEecCcCCCC-CcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 455677999999 6999996555 7788899999975433 344 11 2221
Q ss_pred -------------------cCCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhh
Q psy14958 283 -------------------RTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQI 343 (362)
Q Consensus 283 -------------------~~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~Ypl 343 (362)
.---+++++.+++-|++--|.+.++.+.. +++.++..|..-.+-.+.|=-||.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~se~Yk~G~~~~~i~~ale--------~rdeI~~il~~~~~~~~~e~~~P~ 170 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEVEFVSATELYKSGLYDEAIRIALE--------RRDEIMEILNEYRGRELEEDWSPF 170 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEhHHhhhcccHHHHHHHHHh--------hHHHHHHHHHHhcCCcccCCceec
Confidence 00127999999999998888777773322 446666666532222333434443
No 56
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=42.04 E-value=19 Score=35.14 Aligned_cols=29 Identities=28% Similarity=0.139 Sum_probs=24.2
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.+|+||+.+. ...|++...|+++..+.|-
T Consensus 14 ~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~ 46 (312)
T cd00668 14 SLHLGHALTHIIADFIARYKRMRGYEVPFLPGW 46 (312)
T ss_pred CcchhHHHHHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 4999998876 8889999999998777663
No 57
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=42.04 E-value=21 Score=29.64 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=46.1
Q ss_pred eeEEEcCccccccCCCCCCccc-CCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHH
Q psy14958 105 SNGKIGGATAQVGDPSGKTKDR-DKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVID 183 (362)
Q Consensus 105 ~~~lIGg~Ta~IGDPSGr~~~R-~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~d 183 (362)
.++-|||-+| |-+=.=.+.+ ..+++++-.+=.+.+++.+...++. ...+.|.-|.++-+-+-
T Consensus 10 ~~lAiGG~~g--~~~Wfvtt~~v~~~~~~~~~eF~k~i~~~~d~~l~~---------------Y~~l~N~V~~~N~~HIR 72 (86)
T PF11090_consen 10 RPLAIGGNNG--GCLWFVTTNKVKSLTKKERREFRKLIKEYLDKMLKQ---------------YPVLWNFVWVGNKSHIR 72 (86)
T ss_pred eEEEEccccC--CeEEEEECcHHhhcCHhhhHHHHHHHHHHHHHHHHH---------------hhheeEEEEeCCHHHHH
Confidence 3678899883 2221111111 2466666555566666666666542 34699999999999999
Q ss_pred HHHHHHhhh
Q psy14958 184 FMNHIARLF 192 (362)
Q Consensus 184 fL~~lg~~f 192 (362)
||+.+|..|
T Consensus 73 fLk~lGA~f 81 (86)
T PF11090_consen 73 FLKSLGAVF 81 (86)
T ss_pred HHHhcCcEE
Confidence 999998765
No 58
>PLN02886 aminoacyl-tRNA ligase
Probab=41.95 E-value=70 Score=33.18 Aligned_cols=75 Identities=12% Similarity=-0.028 Sum_probs=48.6
Q ss_pred ceEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCC
Q psy14958 46 GISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDP 119 (362)
Q Consensus 46 ~~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDP 119 (362)
.+|.-|+-| +||.+ ++. +...+|+ | ..+ .|.|=|.-|+. .|
T Consensus 47 ~~v~sGiqPSG~lHLGnylGai~---------------~~v~lQ~-~--~~~--------------~~~IADlHAlt-~~ 93 (389)
T PLN02886 47 KRVVSGVQPTGSIHLGNYLGAIK---------------NWVALQE-T--YDT--------------FFCVVDLHAIT-LP 93 (389)
T ss_pred CeEEEEECCCCccHHHHHHHHHH---------------HHHHHhc-c--CCE--------------EEEEecHHHhh-CC
Confidence 479999999 66665 444 5666777 5 555 68899998886 11
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChh
Q psy14958 120 SGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMS 174 (362)
Q Consensus 120 SGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~ 174 (362)
-+.+++.+|+..+...+... +. +|++++|...|+
T Consensus 94 ---------~~~~~lr~~~~~~~a~~lA~----------Gl--DP~ks~if~QS~ 127 (389)
T PLN02886 94 ---------HDPRELGKATRSTAAIYLAC----------GI--DPSKASVFVQSH 127 (389)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHc----------Cc--CccceEEEEeCC
Confidence 27788888885543322221 11 266777777665
No 59
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=40.71 E-value=36 Score=32.82 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=26.9
Q ss_pred CCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecch
Q psy14958 243 DPTASSLHIGNLLIL-INLIHWQRAGHQVIALMICL 277 (362)
Q Consensus 243 dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~i 277 (362)
.||+ .||+||+.+. ..|.+.+..|.+.+.=|.|.
T Consensus 9 sPtG-~LHlG~~~~al~n~l~ar~~~G~~ilRieDt 43 (239)
T cd00808 9 SPTG-FLHIGGARTALFNYLFARKHGGKFILRIEDT 43 (239)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4677 4999997775 88888888888877768873
No 60
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=40.54 E-value=29 Score=34.92 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=27.3
Q ss_pred eeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe--ecc
Q psy14958 239 YAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL--MIC 276 (362)
Q Consensus 239 YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l--Ig~ 276 (362)
|+.-.||.| +|+||+-+. -.-+-++.+|++++.+ |||
T Consensus 26 ~sSpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~r~nyigD 68 (354)
T PF00750_consen 26 FSSPNPTKP-LHVGHLRNTIIGDSLARILEAAGYDVTRENYIGD 68 (354)
T ss_dssp E---BTTSS--BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBT
T ss_pred ecCCCCCCC-CcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECC
Confidence 333478875 999999887 7788899999998766 688
No 61
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=39.50 E-value=32 Score=36.88 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=30.4
Q ss_pred eeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe--ecch
Q psy14958 239 YAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL--MICL 277 (362)
Q Consensus 239 YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l--Ig~i 277 (362)
|++-.|+++ +|+||+-+. ..-|+++..|++++-+ |||+
T Consensus 118 ~~spn~~~~-~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~ 161 (566)
T TIGR00456 118 FSSANPAGP-LHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDW 161 (566)
T ss_pred ecCCCCCCC-CchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecch
Confidence 555678885 999998887 7889999999998755 6873
No 62
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.84 E-value=34 Score=37.21 Aligned_cols=36 Identities=25% Similarity=0.155 Sum_probs=29.7
Q ss_pred ccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe--ecch
Q psy14958 241 GFDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL--MICL 277 (362)
Q Consensus 241 G~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l--Ig~i 277 (362)
.-+||+| ||+||+-+- -.-|-++.+|++++-. |||+
T Consensus 125 SaNptkp-lHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 125 SANPTGP-LHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred CCCCCCC-cccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 3479886 999998886 7889999999998766 7884
No 63
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=38.32 E-value=24 Score=35.80 Aligned_cols=29 Identities=28% Similarity=0.103 Sum_probs=24.1
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.+|+||+.+. ...||....|+++....|-
T Consensus 15 ~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~ 47 (382)
T cd00817 15 SLHMGHALNNTIQDIIARYKRMKGYNVLWPPGT 47 (382)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCcccccCcc
Confidence 4999999876 7888999999998777664
No 64
>PLN02286 arginine-tRNA ligase
Probab=38.21 E-value=29 Score=37.43 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=28.9
Q ss_pred ccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe--ecch
Q psy14958 241 GFDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL--MICL 277 (362)
Q Consensus 241 G~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l--Ig~i 277 (362)
.-+||.| ||+||+-+. -.-+-++-+|++++-+ |||+
T Consensus 125 SpNp~kp-lHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~ 166 (576)
T PLN02286 125 SPNIAKE-MHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDW 166 (576)
T ss_pred CCCCCCC-CccccccchhhHHHHHHHHHHcCCceEEEEeecch
Confidence 3478885 999998886 6778889999998765 6874
No 65
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=37.43 E-value=31 Score=36.74 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=0.0
Q ss_pred eccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 240 AGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 240 iG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
+|+.|++ ..|+||+..+ +.-|++...|+++..+-+
T Consensus 29 ~g~~psG-~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~ 67 (510)
T PRK00750 29 TGIGPSG-LPHIGNFREVARTDMVRRALRDLGIKTRLIFF 67 (510)
T ss_pred eCCCCCC-CcccccccchhhHHHHHHHHHHcCCcEEEEEE
No 66
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=36.25 E-value=33 Score=36.06 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=25.4
Q ss_pred CCCCCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 244 PTASSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 244 pTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
|++ .+|+||+.+. +..||+...|+++..+.|-
T Consensus 10 ~ng-~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~ 45 (530)
T TIGR00398 10 ANG-KPHLGHAYTTILADVYARYKRLRGYEVLFVCGT 45 (530)
T ss_pred CCC-CcccchhHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 444 4999998887 7788888889998777763
No 67
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=35.62 E-value=30 Score=34.03 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=24.2
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.+|+||+.+. +..|++...|+++..+.|-
T Consensus 14 ~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~ 46 (319)
T cd00814 14 VPHLGHLYGTVLADVFARYQRLRGYDVLFVTGT 46 (319)
T ss_pred CcchhhHHHHHHHHHHHHHHHhCCCcccccCcc
Confidence 5999998886 7889999999998777664
No 68
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=33.67 E-value=42 Score=36.05 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=29.5
Q ss_pred eccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe--ecch
Q psy14958 240 AGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL--MICL 277 (362)
Q Consensus 240 iG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l--Ig~i 277 (362)
+.-+||.| ||+||+-+. -..|-++.+|++++-. |||+
T Consensus 120 sSpNp~kp-lHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~ 162 (562)
T PRK12451 120 SSPNIAKP-FSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDW 162 (562)
T ss_pred cCCCCCCC-cccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCc
Confidence 33478885 999999886 7788899999998765 6773
No 69
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=33.16 E-value=49 Score=34.35 Aligned_cols=29 Identities=21% Similarity=0.116 Sum_probs=24.8
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
++|+||+.+. +..||++..|+++..+.|-
T Consensus 15 ~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~ 47 (511)
T PRK11893 15 KPHIGHAYTTLAADVLARFKRLRGYDVFFLTGT 47 (511)
T ss_pred CcccchhHHHHHHHHHHHHHHhcCCcEEecCCC
Confidence 5999998876 8889999999998887764
No 70
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=32.86 E-value=51 Score=26.77 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=35.5
Q ss_pred CceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecc
Q psy14958 236 QTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~ 276 (362)
..-++|+||+....+.|+++..-++++....|.+.+-+-++
T Consensus 96 ~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 96 YYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 45788999999888899999999999999999988776554
No 71
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=32.44 E-value=38 Score=36.77 Aligned_cols=29 Identities=21% Similarity=0.052 Sum_probs=24.5
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.+|+||+.+. ..-||+...|+++..+.|.
T Consensus 18 ~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~ 50 (648)
T PRK12267 18 KPHIGHAYTTIAADALARYKRLQGYDVFFLTGT 50 (648)
T ss_pred CcccccchHHHHHHHHHHHHHhcCCceEeecCC
Confidence 5999998877 7888888999998877774
No 72
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=31.97 E-value=31 Score=33.98 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=23.7
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.+|+||+.+. +..|++...|+++..+.|-
T Consensus 14 ~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~ 46 (314)
T cd00812 14 ALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGF 46 (314)
T ss_pred CccccchHHHHHHHHHHHHHHHcCCCcCCCCCc
Confidence 4999998886 7888888899997666653
No 73
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=31.90 E-value=1.1e+02 Score=31.67 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=45.1
Q ss_pred CCceeeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEee-cc----hh------------HHh------------
Q psy14958 235 PQTVYAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALM-IC----LS------------QIL------------ 281 (362)
Q Consensus 235 sl~~YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lI-g~----i~------------~~l------------ 281 (362)
...+-.|+.||+ ..|+||+--+ +.-+-|+..|.++-.+. .| ++ +|+
T Consensus 24 ~~v~~sG~sPSG-~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G 102 (360)
T PF01921_consen 24 PYVFASGISPSG-LPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFG 102 (360)
T ss_dssp EEEEEEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTS
T ss_pred cEEEecCCCCCC-CcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCC
Confidence 456678999999 6999997665 88899999999964443 33 22 111
Q ss_pred -----------------hcCCCceEEEechhhhcCCCHHHHHHHHH
Q psy14958 282 -----------------WRTCNEEAVVNNMSWYNSINVIDFMNHIA 310 (362)
Q Consensus 282 -----------------~~~~~~~~Iv~NsdW~~~~~~~dfL~~vg 310 (362)
..---+.+++.+++.|++--|.+.++.+.
T Consensus 103 ~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL 148 (360)
T PF01921_consen 103 CHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTAL 148 (360)
T ss_dssp SSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHH
T ss_pred CCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHH
Confidence 00011689999999999888887777443
No 74
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=30.90 E-value=62 Score=32.31 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=27.8
Q ss_pred CCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecch
Q psy14958 243 DPTASSLHIGNLLIL-INLIHWQRAGHQVIALMICL 277 (362)
Q Consensus 243 dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~i 277 (362)
.||+ .||+||+.+. ..|.+.+..|.+-+.=|.|.
T Consensus 13 SPTG-~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt 47 (299)
T PRK05710 13 SPSG-PLHFGSLVAALGSWLDARAHGGRWLLRIEDI 47 (299)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcCCEEEEEECcC
Confidence 4666 4999998775 88888899999988888883
No 75
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=30.85 E-value=72 Score=33.51 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=30.8
Q ss_pred CCCCceee-ccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 233 RTPQTVYA-GFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 233 sksl~~Yi-G~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
.+..++|+ |-.|.+ .+|+||+.+. +.-||++..|+++..+.|
T Consensus 19 ~~~v~~yvcgptvy~-~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n 65 (465)
T TIGR00435 19 QGKVKMYVCGPTVYD-YCHIGHARTAIVFDVLRRYLRYLGYKVQYVQN 65 (465)
T ss_pred CCcceEEEecCccCC-CcccccchHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 34566675 444444 5999998776 788999999999877766
No 76
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=30.68 E-value=47 Score=33.13 Aligned_cols=29 Identities=21% Similarity=-0.140 Sum_probs=23.8
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.+|+||+.+. +..|++...|+++..+.|-
T Consensus 15 ~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~ 47 (338)
T cd00818 15 LPHYGHALNKILKDIINRYKTMQGYYVPRRPGW 47 (338)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCccCCcCCc
Confidence 4999998876 8889999999998766653
No 77
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=30.05 E-value=58 Score=33.65 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=28.8
Q ss_pred CceeeccCCCC-CCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 236 QTVYAGFDPTA-SSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 236 l~~YiG~dpTa-~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.++|+ ..||+ +..|+||+.+. +.-|+++..|+++..+.|-
T Consensus 10 v~~Yv-CGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~ni 54 (384)
T PRK12418 10 ATMYV-CGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNV 54 (384)
T ss_pred eEEEe-cCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 45554 22333 35999998886 7889999999998777663
No 78
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=29.89 E-value=69 Score=30.82 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=27.6
Q ss_pred CCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecc
Q psy14958 243 DPTASSLHIGNLLIL-INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 243 dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~ 276 (362)
.||+ .||+||+.+. +.|.+-+..|-+-+.=|.|
T Consensus 9 sPtG-~lHlG~~r~al~n~l~Ar~~~G~~iLRieD 42 (230)
T cd00418 9 SPTG-YLHIGHARTALFNFAFARKYGGKFILRIED 42 (230)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 4777 4999998876 8888888899998888887
No 79
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=29.08 E-value=64 Score=23.55 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=10.3
Q ss_pred eeCC--Ccchhhhh
Q psy14958 51 KLSP--CGHLLAEN 62 (362)
Q Consensus 51 g~dp--~gh~~~~~ 62 (362)
.||| .||.-.++
T Consensus 7 ~Fdp~H~GH~~~l~ 20 (66)
T TIGR00125 7 TFDPFHLGHLDLLE 20 (66)
T ss_pred ccCCCCHHHHHHHH
Confidence 4899 89998887
No 80
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=28.91 E-value=74 Score=33.96 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=30.7
Q ss_pred CCCCceeeccCCCCC-CcchhhHhHH----HHHHHHHHcCCceEEee
Q psy14958 233 RTPQTVYAGFDPTAS-SLHIGNLLIL----INLIHWQRAGHQVIALM 274 (362)
Q Consensus 233 sksl~~YiG~dpTa~-~lHlGhlmsi----l~lr~fq~~G~~~i~lI 274 (362)
.+..+.|+ ..||.. ..|+||+.+. +.-||++..|.++..+.
T Consensus 21 ~~~v~mYv-CGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~ 66 (490)
T PRK14536 21 HGHVRLYG-CGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVM 66 (490)
T ss_pred CCceEEEe-eCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence 44577885 345544 4999998776 78899999999987774
No 81
>PLN02946 cysteine-tRNA ligase
Probab=28.87 E-value=73 Score=34.59 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=31.0
Q ss_pred CCCCceeeccCCCCC-CcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 233 RTPQTVYAGFDPTAS-SLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 233 sksl~~YiG~dpTa~-~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
.+..+.|+ ..||.. ..|+||+.+. +.-||++..|+++..+.+
T Consensus 78 ~~~v~~Y~-CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~n 124 (557)
T PLN02946 78 EGKVGMYV-CGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRN 124 (557)
T ss_pred CCceeEEE-eCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEEC
Confidence 44577785 345543 4999998876 788999999999877665
No 82
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=28.46 E-value=77 Score=35.37 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=31.3
Q ss_pred CCCCceeeccCCCCC-CcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 233 RTPQTVYAGFDPTAS-SLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 233 sksl~~YiG~dpTa~-~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
.+..++|+ ..||.. ..|+||+.+. +.-|+++..|+++..+.|
T Consensus 246 ~~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~N 292 (699)
T PRK14535 246 PENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRN 292 (699)
T ss_pred CCceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeC
Confidence 34567775 345543 4999998876 788999999999877765
No 83
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=27.64 E-value=39 Score=28.70 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=25.7
Q ss_pred ccccCCCCCCcccCC----CCH--HHHHHHHHHHHHHHHHH
Q psy14958 114 AQVGDPSGKTKDRDK----QDL--ATVQTNTKGIEKNIKTI 148 (362)
Q Consensus 114 a~IGDPSGr~~~R~~----Lt~--e~i~~Na~~i~~Qi~~i 148 (362)
..+|++++...++.+ +++ +-|..|+.++++|+..-
T Consensus 54 ~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~a 94 (99)
T PF13758_consen 54 EILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAA 94 (99)
T ss_pred HHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778886555553 444 88999999999999763
No 84
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.50 E-value=64 Score=35.00 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=25.8
Q ss_pred CCCCCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 244 PTASSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 244 pTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
|.+ .+|+||+.+. ..-||..+.|+.++.+-|.
T Consensus 16 ~Ng-~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGt 51 (558)
T COG0143 16 PNG-PPHLGHLYTYLAADVYARYLRLRGYEVFFLTGT 51 (558)
T ss_pred CCC-CcchhhHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 344 5999998876 7788888889998888886
No 85
>PLN02224 methionine-tRNA ligase
Probab=27.12 E-value=57 Score=35.70 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=24.7
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.+|+||+.+. ...||....|+++..+.|-
T Consensus 83 ~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~ 115 (616)
T PLN02224 83 PPHMGSAYTTIAADSIARFQRLLGKKVIFITGT 115 (616)
T ss_pred CCchhccHHHHHHHHHHHHHHhcCCceEEecCc
Confidence 5999998886 7889999999998877774
No 86
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=26.20 E-value=84 Score=30.94 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=27.3
Q ss_pred CCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecc
Q psy14958 243 DPTASSLHIGNLLIL-INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 243 dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~ 276 (362)
.||+ .||+||+-+. +.|.+-...|-+-+.=|.|
T Consensus 8 SPtG-~lHiG~~rtAL~n~l~Ar~~gG~~iLRiED 41 (272)
T TIGR03838 8 SPSG-PLHFGSLVAALGSYLDARAHGGRWLVRIED 41 (272)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEeCc
Confidence 4666 4999998775 8888888999998888887
No 87
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=25.90 E-value=75 Score=34.81 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=26.7
Q ss_pred CCCCCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 244 PTASSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 244 pTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
|++ .+|+||+.+. +..||....|+++..+.|.
T Consensus 13 ~ng-~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~ 48 (673)
T PRK00133 13 ANG-PIHLGHLVEYIQADIWVRYQRMRGHEVLFVCAD 48 (673)
T ss_pred CCC-cccccchHHHHHHHHHHHHHHhcCCeeEEeCcc
Confidence 444 5999998886 8889999999998888875
No 88
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=25.59 E-value=95 Score=33.12 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCCceeeccCCCCC-CcchhhHhHH----HHHHHHHHcCCceEE
Q psy14958 234 TPQTVYAGFDPTAS-SLHIGNLLIL----INLIHWQRAGHQVIA 272 (362)
Q Consensus 234 ksl~~YiG~dpTa~-~lHlGhlmsi----l~lr~fq~~G~~~i~ 272 (362)
+..++|+ ..||.. ..|+||+.+. +.-|+++..|.++..
T Consensus 20 ~~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~ 62 (481)
T PRK14534 20 SDVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNY 62 (481)
T ss_pred CceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEE
Confidence 3467776 345554 4999998886 788999999999876
No 89
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=25.52 E-value=86 Score=31.21 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=26.3
Q ss_pred CCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecch
Q psy14958 243 DPTASSLHIGNLLIL-INLIHWQRAGHQVIALMICL 277 (362)
Q Consensus 243 dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~i 277 (362)
.||+ .||+||+.+. +.+.+-...|-+-+.=|.|.
T Consensus 9 sPtG-~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt 43 (314)
T PF00749_consen 9 SPTG-YLHIGHARTALLNYLFARKYGGKFILRIEDT 43 (314)
T ss_dssp -SSS-S-BHHHHHHHHHHHHHHHHTTSEEEEEEETS
T ss_pred CCCC-CcccchhHHHHHHHHHHhccCceEEEecccc
Confidence 4677 4999998876 78888888999988888883
No 90
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=25.37 E-value=94 Score=32.47 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=30.0
Q ss_pred CCceee-ccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 235 PQTVYA-GFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 235 sl~~Yi-G~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
..++|+ |-.|- +..|+||+.+. +.-||++..|+++..+.|-
T Consensus 36 ~v~~YvCGpTvY-~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~ni 81 (411)
T TIGR03447 36 EAGMYVCGITPY-DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNV 81 (411)
T ss_pred cceEEEeCCccC-CCcccccchHHHHHHHHHHHHHhcCCceEEeeCC
Confidence 456665 33332 35999998886 7889999999998877664
No 91
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=25.09 E-value=94 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=25.4
Q ss_pred eccCCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecc
Q psy14958 240 AGFDPTASSLHIGNLLIL-INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 240 iG~dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~ 276 (362)
+|-.||+ .+|+||+.+. ..+.+.+..+.+-+.=|.|
T Consensus 6 faPsPtG-~lHiG~~rtal~~~l~Ar~~~G~~ilRieD 42 (240)
T cd09287 6 FAPNPNG-PLHLGHARAAILNGEYAKMYGGKFILRFDD 42 (240)
T ss_pred CCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEeeCc
Confidence 3456777 4999998886 6666666666666666666
No 92
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=24.73 E-value=95 Score=30.12 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=26.4
Q ss_pred CCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecc
Q psy14958 243 DPTASSLHIGNLLIL-INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 243 dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~ 276 (362)
.||+ .||+||+.+. +.+.+-...|-+-++=|.|
T Consensus 9 sPtG-~lHlG~~~~al~~~l~Ar~~~G~~iLRieD 42 (238)
T cd00807 9 EPNG-YLHIGHAKAILLNFGYAKKYGGRCNLRFDD 42 (238)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 4677 4999998886 7777888888888777877
No 93
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=24.51 E-value=72 Score=34.48 Aligned_cols=29 Identities=28% Similarity=0.123 Sum_probs=24.0
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.+|+||++.. ...||....|+++....|=
T Consensus 37 ~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~ 69 (601)
T PF00133_consen 37 DLHIGHALNKTIKDIIARYKRMQGYNVLFPPGW 69 (601)
T ss_dssp S-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCc
Confidence 4999999887 8899999999998888773
No 94
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=23.78 E-value=65 Score=34.11 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.8
Q ss_pred CcchhhHhHH-----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL-----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi-----l~lr~fq~~G~~~i~lIg~ 276 (362)
++|+||+.+. +..||+...|+++..+.|-
T Consensus 17 ~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~ 50 (556)
T PRK12268 17 PLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGS 50 (556)
T ss_pred CccccccccchhHHHHHHHHHHhcCCceEecCcC
Confidence 6999998875 8889999999998887774
No 95
>PLN02563 aminoacyl-tRNA ligase
Probab=22.73 E-value=92 Score=35.97 Aligned_cols=35 Identities=29% Similarity=0.208 Sum_probs=27.8
Q ss_pred ccCCCCCC--cchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 241 GFDPTASS--LHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 241 G~dpTa~~--lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
++ |.|.. +|+||+..- ...||....|+.+.-..|-
T Consensus 117 ~~-PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~ 157 (963)
T PLN02563 117 MF-PYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGW 157 (963)
T ss_pred CC-CCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccc
Confidence 66 54444 899998775 8899999999998888874
No 96
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.54 E-value=63 Score=36.94 Aligned_cols=31 Identities=26% Similarity=0.080 Sum_probs=26.4
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecchh
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMICLS 278 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~i~ 278 (362)
++|+||.+.. .+.||....|+.+...-|-.|
T Consensus 47 ~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 47 SLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred cccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCC
Confidence 5999998887 889999999999888887533
No 97
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=21.29 E-value=72 Score=36.12 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=24.7
Q ss_pred CcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 248 SLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 248 ~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
++|+||+... ...||....|+++....|-
T Consensus 43 ~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~ 75 (842)
T TIGR00396 43 ALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGW 75 (842)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCceeccCCc
Confidence 4999998876 8889999999998877774
No 98
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=20.86 E-value=1.3e+02 Score=24.50 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=19.0
Q ss_pred CCCCcchhhHhHHHHHHHHHHcCCceEEeecc
Q psy14958 245 TASSLHIGNLLILINLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 245 Ta~~lHlGhlmsil~lr~fq~~G~~~i~lIg~ 276 (362)
+.+-+|.||+..+..+..+. .+.++.+.+
T Consensus 7 ~Fdp~H~GH~~l~~~a~~~~---d~~i~~i~~ 35 (105)
T cd02156 7 EPGYLHIGHAKLICRAKGIA---DQCVVRIDD 35 (105)
T ss_pred CCCCCCHHHHHHHHHHHHhC---CcEEEEEcC
Confidence 34569999998765555543 456666655
Done!