Query psy14958
Match_columns 362
No_of_seqs 378 out of 2036
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:50:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p0j_A Tyrosyl-tRNA synthetase 100.0 5.2E-36 1.8E-40 317.2 15.5 279 17-355 9-522 (690)
2 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.6E-35 5.4E-40 298.0 12.3 200 32-276 21-280 (419)
3 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 3.4E-35 1.2E-39 295.7 12.8 200 31-276 22-281 (420)
4 1h3f_A Tyrosyl-tRNA synthetase 100.0 8.7E-35 3E-39 293.7 6.7 212 16-274 5-277 (432)
5 2jan_A Tyrosyl-tRNA synthetase 100.0 1.8E-33 6.1E-38 284.1 9.7 199 32-276 23-282 (432)
6 2pid_A Tyrosyl-tRNA synthetase 100.0 4.5E-32 1.5E-36 267.8 11.9 204 31-268 32-296 (356)
7 1y42_X Tyrosyl-tRNA synthetase 100.0 3.1E-32 1.1E-36 272.0 7.8 183 42-256 61-320 (392)
8 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1.2E-31 4E-36 269.9 10.8 149 211-362 9-191 (420)
9 2ts1_A Tyrosyl-tRNA synthetase 100.0 9.7E-32 3.3E-36 270.6 9.9 149 211-362 7-190 (419)
10 2jan_A Tyrosyl-tRNA synthetase 100.0 2.8E-31 9.5E-36 268.1 10.7 151 210-362 8-192 (432)
11 1y42_X Tyrosyl-tRNA synthetase 100.0 5.7E-31 1.9E-35 262.9 10.7 151 211-362 40-237 (392)
12 2yxn_A Tyrosyl-tRNA synthetase 100.0 8.4E-31 2.9E-35 255.3 10.0 180 32-256 24-262 (322)
13 1h3f_A Tyrosyl-tRNA synthetase 100.0 6.7E-30 2.3E-34 258.0 12.0 148 207-361 10-191 (432)
14 2yxn_A Tyrosyl-tRNA synthetase 100.0 6.5E-30 2.2E-34 249.1 9.6 151 211-362 10-196 (322)
15 2pid_A Tyrosyl-tRNA synthetase 100.0 2E-29 6.8E-34 248.9 12.5 151 210-362 14-215 (356)
16 2j5b_A Tyrosyl-tRNA synthetase 99.9 1.5E-26 5.2E-31 227.5 7.3 150 208-362 14-191 (348)
17 2cya_A Tyrosyl-tRNA synthetase 99.9 2.9E-26 9.9E-31 226.8 7.9 148 207-361 8-181 (364)
18 1r6u_A Tryptophanyl-tRNA synth 99.9 2.6E-26 9E-31 232.1 7.2 170 178-353 50-245 (437)
19 2cyc_A Tyrosyl-tRNA synthetase 99.9 1.5E-25 5.1E-30 222.6 8.9 147 207-361 5-184 (375)
20 2zp1_A Tyrosyl-tRNA synthetase 99.9 1.7E-25 6E-30 217.1 9.0 145 207-361 2-167 (314)
21 2ip1_A Tryptophanyl-tRNA synth 99.9 7.9E-26 2.7E-30 228.3 6.8 176 178-361 44-253 (432)
22 3vgj_A Tyrosyl-tRNA synthetase 99.9 2E-25 6.8E-30 221.6 9.4 143 207-353 29-200 (373)
23 1r6t_A Tryptophanyl-tRNA synth 99.9 5.3E-25 1.8E-29 224.7 9.6 170 177-352 96-291 (477)
24 3hv0_A Tryptophanyl-tRNA synth 99.9 5.7E-25 1.9E-29 219.8 6.0 175 178-361 16-224 (393)
25 3foc_A Tryptophanyl-tRNA synth 99.9 1.4E-24 4.8E-29 220.2 6.7 169 179-354 34-229 (451)
26 3vgj_A Tyrosyl-tRNA synthetase 99.9 4.7E-24 1.6E-28 211.8 5.9 192 13-257 21-273 (373)
27 2j5b_A Tyrosyl-tRNA synthetase 99.9 1.3E-23 4.5E-28 206.7 5.1 186 17-257 9-258 (348)
28 3i05_A Tryptophanyl-tRNA synth 99.9 3.7E-23 1.3E-27 206.8 8.1 167 177-351 19-210 (395)
29 2cya_A Tyrosyl-tRNA synthetase 99.9 1.9E-23 6.5E-28 206.6 4.7 189 17-256 4-263 (364)
30 2cyc_A Tyrosyl-tRNA synthetase 99.9 3.8E-23 1.3E-27 205.3 5.8 192 18-256 2-276 (375)
31 3tzl_A Tryptophanyl-tRNA synth 99.9 2.1E-22 7.2E-27 196.3 10.5 120 233-361 1-143 (322)
32 2cyb_A Tyrosyl-tRNA synthetase 99.9 1.5E-22 5.2E-27 196.6 9.3 146 207-361 5-174 (323)
33 3p0j_A Tyrosyl-tRNA synthetase 99.9 1.3E-22 4.5E-27 215.0 8.6 142 207-353 13-183 (690)
34 2el7_A Tryptophanyl-tRNA synth 99.9 8.9E-22 3.1E-26 192.9 11.9 118 236-361 2-145 (337)
35 3tze_A Tryptophanyl-tRNA synth 99.9 3.1E-22 1.1E-26 200.8 7.3 174 178-361 43-247 (406)
36 3jxe_A Tryptophanyl-tRNA synth 99.9 6.4E-22 2.2E-26 197.7 8.7 165 178-353 15-206 (392)
37 1n3l_A Tyrosyl-tRNA synthetase 99.8 1.4E-21 4.8E-26 193.7 8.9 144 207-361 9-182 (372)
38 2dlc_X Tyrosyl-tRNA synthetase 99.8 1.7E-21 5.9E-26 194.4 9.3 145 207-361 11-186 (394)
39 2g36_A Tryptophanyl-tRNA synth 99.8 4.3E-21 1.5E-25 188.3 11.2 119 235-361 12-157 (340)
40 3hzr_A Tryptophanyl-tRNA synth 99.8 1.2E-21 4E-26 195.5 6.4 166 177-351 23-213 (386)
41 2cyb_A Tyrosyl-tRNA synthetase 99.8 1.9E-21 6.5E-26 188.9 7.5 183 18-256 2-238 (323)
42 1yi8_B Tryptophanyl-tRNA synth 99.8 1.8E-20 6.1E-25 184.7 10.9 120 233-361 20-166 (351)
43 2zp1_A Tyrosyl-tRNA synthetase 99.8 1.4E-20 4.8E-25 182.6 8.6 166 32-257 19-229 (314)
44 1r6u_A Tryptophanyl-tRNA synth 99.8 7.2E-21 2.5E-25 192.5 6.1 164 35-256 98-327 (437)
45 3hv0_A Tryptophanyl-tRNA synth 99.8 8.5E-21 2.9E-25 189.7 5.3 172 33-257 62-292 (393)
46 1n3l_A Tyrosyl-tRNA synthetase 99.8 1.7E-20 5.9E-25 185.9 6.8 185 17-256 5-247 (372)
47 2dlc_X Tyrosyl-tRNA synthetase 99.8 5.6E-20 1.9E-24 183.4 10.3 190 17-257 7-253 (394)
48 3foc_A Tryptophanyl-tRNA synth 99.8 5.6E-20 1.9E-24 186.5 4.7 172 34-257 80-359 (451)
49 3i05_A Tryptophanyl-tRNA synth 99.8 1.4E-19 4.9E-24 181.0 5.4 170 33-257 66-295 (395)
50 1r6t_A Tryptophanyl-tRNA synth 99.8 3.9E-19 1.3E-23 181.5 8.1 168 35-256 145-374 (477)
51 2ip1_A Tryptophanyl-tRNA synth 99.8 2.1E-19 7.1E-24 181.6 4.8 169 35-256 92-320 (432)
52 3jxe_A Tryptophanyl-tRNA synth 99.8 6.3E-19 2.2E-23 176.2 7.2 168 34-256 62-278 (392)
53 1i6k_A TRPRS, tryptophanyl-tRN 99.7 4.5E-17 1.5E-21 159.0 10.6 117 236-361 2-141 (328)
54 3tzl_A Tryptophanyl-tRNA synth 99.7 1.2E-17 4.1E-22 162.8 6.3 154 44-255 2-215 (322)
55 3tze_A Tryptophanyl-tRNA synth 99.7 1.2E-17 4E-22 167.7 6.1 168 33-256 89-314 (406)
56 2el7_A Tryptophanyl-tRNA synth 99.7 2.8E-17 9.6E-22 161.0 8.4 154 47-256 3-219 (337)
57 2yy5_A Tryptophanyl-tRNA synth 99.7 6.7E-17 2.3E-21 159.1 9.2 118 235-361 4-151 (348)
58 1yi8_B Tryptophanyl-tRNA synth 99.7 3.8E-17 1.3E-21 161.0 5.9 156 43-255 20-238 (351)
59 3hzr_A Tryptophanyl-tRNA synth 99.6 6E-17 2E-21 161.6 5.5 168 35-257 72-295 (386)
60 3a04_A Tryptophanyl-tRNA synth 99.6 4.1E-16 1.4E-20 154.7 10.6 165 178-355 14-202 (372)
61 3prh_A Tryptophanyl-tRNA synth 99.6 7.4E-16 2.5E-20 153.9 8.8 115 234-353 30-171 (388)
62 3sz3_A Tryptophanyl-tRNA synth 99.6 1.7E-16 5.7E-21 156.0 3.6 113 236-353 7-143 (341)
63 2g36_A Tryptophanyl-tRNA synth 99.6 2.7E-16 9.2E-21 154.3 4.2 153 45-256 12-229 (340)
64 3n9i_A Tryptophanyl-tRNA synth 99.6 3.9E-16 1.3E-20 153.8 3.6 114 235-353 15-152 (346)
65 1i6k_A TRPRS, tryptophanyl-tRN 99.5 1.2E-14 4E-19 142.0 5.3 155 47-256 3-219 (328)
66 2yy5_A Tryptophanyl-tRNA synth 99.4 1.8E-13 6.1E-18 134.7 5.0 157 44-256 3-229 (348)
67 3sz3_A Tryptophanyl-tRNA synth 99.3 1E-12 3.5E-17 129.2 4.1 154 46-256 7-228 (341)
68 3prh_A Tryptophanyl-tRNA synth 99.1 2.8E-11 9.6E-16 120.9 6.1 165 34-257 19-254 (388)
69 3n9i_A Tryptophanyl-tRNA synth 99.1 6E-11 2.1E-15 116.9 4.1 157 45-256 15-234 (346)
70 3a04_A Tryptophanyl-tRNA synth 98.9 7.4E-10 2.5E-14 109.9 6.0 170 33-257 58-282 (372)
71 1f7u_A Arginyl-tRNA synthetase 55.8 8.5 0.00029 40.2 4.1 37 239-276 149-191 (607)
72 1iq0_A Arginyl-tRNA synthetase 55.5 7.3 0.00025 40.3 3.5 38 239-277 109-152 (592)
73 2zue_A Arginyl-tRNA synthetase 55.4 8.5 0.00029 40.3 4.0 38 239-277 125-168 (629)
74 3tqo_A Cysteinyl-tRNA syntheta 53.5 11 0.00038 38.1 4.4 41 234-275 24-69 (462)
75 3c8z_A Cysteinyl-tRNA syntheta 49.5 15 0.0005 36.2 4.5 39 236-275 40-83 (414)
76 2x1l_A Methionyl-tRNA syntheta 45.5 16 0.00056 36.6 4.2 38 238-275 13-57 (524)
77 3u1f_A Methionyl-tRNA syntheta 44.0 18 0.00061 36.3 4.2 32 244-276 20-55 (542)
78 4dlp_A Aminoacyl-tRNA syntheta 41.4 20 0.00069 36.2 4.1 39 237-276 26-71 (536)
79 2csx_A Methionyl-tRNA syntheta 40.0 22 0.00074 35.4 4.1 31 244-275 16-50 (497)
80 1irx_A Lysyl-tRNA synthetase; 38.4 24 0.00081 35.8 4.1 34 241-275 27-64 (523)
81 2d5b_A Methionyl-tRNA syntheta 38.3 26 0.00088 34.8 4.3 29 247-275 16-48 (500)
82 3kfl_A Methionyl-tRNA syntheta 37.7 24 0.00083 36.0 4.1 40 236-276 26-72 (564)
83 1li5_A Cysrs, cysteinyl-tRNA s 37.3 26 0.0009 35.0 4.2 39 235-274 22-65 (461)
84 3fnr_A Arginyl-tRNA synthetase 31.5 36 0.0012 34.3 4.1 35 242-277 39-79 (464)
85 3h99_A Methionyl-tRNA syntheta 31.4 47 0.0016 33.7 5.0 41 235-276 17-64 (560)
86 3sp1_A Cysteinyl-tRNA syntheta 29.1 44 0.0015 34.2 4.3 39 235-274 42-85 (501)
87 1nzj_A Hypothetical protein YA 26.4 60 0.0021 30.7 4.5 34 243-277 13-47 (298)
88 3ohe_A Histidine triad (HIT) p 25.3 1.1E+02 0.0037 25.4 5.4 46 102-147 88-135 (137)
89 1wkb_A Leucyl-tRNA synthetase; 23.7 42 0.0014 35.8 3.1 31 244-275 45-79 (810)
90 4en6_A Hemagglutinin component 23.1 65 0.0022 29.2 3.7 35 106-140 67-107 (224)
91 1j09_A Glutamyl-tRNA synthetas 20.8 70 0.0024 32.3 3.9 33 243-276 9-42 (468)
No 1
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=5.2e-36 Score=317.18 Aligned_cols=279 Identities=11% Similarity=-0.035 Sum_probs=214.4
Q ss_pred hHHHHHHHHhc-CchhhHH-----HHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhc
Q psy14958 17 MNCREILSEIF-GLKYFLS-----PLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQ 85 (362)
Q Consensus 17 ~~~~~~~~~~~-g~~~~~~-----~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (362)
|+..|.++.+. |+.|++. ++| .+++|++++.|||| +||.++..+ +++.||+.
T Consensus 9 ~~~~~~~~~~~~~~~e~~~~~eL~~~L---~~~~~~~vy~G~~PTg~lHLG~~v~~~~--------------~~~~lQ~~ 71 (690)
T 3p0j_A 9 MNTDERYKLLRSVGEECIQESELRNLI---EKKPLIRCYDGFEPSGRMHIAQGIFKAV--------------NVNKCTAA 71 (690)
T ss_dssp CCHHHHHHHHHHTCSEEECHHHHHHHH---HHCTTEEEEEEECCCSCCBHHHHHHHHH--------------HHHHHHHT
T ss_pred cCHHHHHHHHhhCceeecCHHHHHHHH---hcCCCceEEeeecCCCcchhHhhHHHHH--------------HHHHHHHC
Confidence 67788899888 8766554 444 34789999999999 789776542 57889999
Q ss_pred CCCccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q psy14958 86 GDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLK 165 (362)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~ 165 (362)
| |.+ +++|||+||+||||||++. |+|++|+..+.+++. .+.. +++
T Consensus 72 G--~~~--------------~~lIaD~ha~~~d~~~~~~-------e~i~~~~~~~~~~~l-A~Gl-----------Dp~ 116 (690)
T 3p0j_A 72 G--CEF--------------VFWVADWFALMNDKVGGEL-------EKIRIVGRYLIEVWK-AAGM-----------DMD 116 (690)
T ss_dssp T--EEE--------------EEEECCGGGGGGCTTTTHH-------HHHHHHHHHHHHHHH-HTTC-----------CGG
T ss_pred C--CcE--------------EEEEeeeEEEecCCCcchH-------HHHHHHHHHHHHHHH-HcCC-----------ChH
Confidence 8 999 7999999999999999975 668999966655433 3211 277
Q ss_pred CcEEEeChhhhccCC--HHHHHHHHHhhhhhhhhhhhc--------------------------------ccCccchhHH
Q psy14958 166 PPIVVNNMSWYNSIN--VIDFMNHIARLFRMGDMLKKQ--------------------------------SVGGSDQMGN 211 (362)
Q Consensus 166 ~~~i~nN~~Wl~~m~--~~dfL~~lg~~f~v~~ML~Rd--------------------------------~iGGsDQ~~N 211 (362)
+++|++||+|+..++ +..++.++++++||++|++++ ..||+||++|
T Consensus 117 k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~ 196 (690)
T 3p0j_A 117 KVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKV 196 (690)
T ss_dssp GEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGGHHH
T ss_pred HeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCCCchhhHhhHHHHHHHHHhhCCCEEeccccHHHH
Confidence 899999999999886 356777799999999999875 2599999999
Q ss_pred Hhhcccchhccccc------e---eeeec-----cCCCCc-eeecc----------------------------------
Q psy14958 212 IKAGHDLISKLYGK------T---VFDLL-----VRTPQT-VYAGF---------------------------------- 242 (362)
Q Consensus 212 I~rGrdLi~r~~gq------e---Lp~LL-----~sksl~-~YiG~---------------------------------- 242 (362)
+..+|+++++.... + ++.|. .|||.+ +||++
T Consensus 197 l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i~kKI~~A~td~~~~~~~~~~d~g~~~~ 276 (690)
T 3p0j_A 197 NMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQAYCPRVKQSASAITDDGAPVA 276 (690)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTCCHHHHHHHHHTSCCCSSCCCCCCCCTTCCCCC
T ss_pred HHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeeccCCHHHHHHHHHhCcCCCcccccccccCCCCccc
Confidence 99999998754221 0 11210 022221 11110
Q ss_pred --------------------------------------------------------------------------------
Q psy14958 243 -------------------------------------------------------------------------------- 242 (362)
Q Consensus 243 -------------------------------------------------------------------------------- 242 (362)
T Consensus 277 ~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~ 356 (690)
T 3p0j_A 277 TDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLE 356 (690)
T ss_dssp CSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence
Q ss_pred -------------------------------CCCCCCcchhhHhHHHH-HHHHHHc--CCceEEeecchhHHhhc-----
Q psy14958 243 -------------------------------DPTASSLHIGNLLILIN-LIHWQRA--GHQVIALMICLSQILWR----- 283 (362)
Q Consensus 243 -------------------------------dpTa~~lHlGhlmsil~-lr~fq~~--G~~~i~lIg~i~~~l~~----- 283 (362)
-|+..++|+||++++++ ++.|+.+ ||.++++|||+|+++++
T Consensus 357 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ps~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~ 436 (690)
T 3p0j_A 357 AVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGV 436 (690)
T ss_dssp HHHHTCCC-----------CCCCSSCEEEEECCCCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCC
T ss_pred HHHHHhcCCCCCCCcccccCCCCCCcceEEecCCCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCC
Confidence 13344799999999999 9999999 99999999999877641
Q ss_pred ------------------C-CCceEEEechhhhcCC---CHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhh
Q psy14958 284 ------------------T-CNEEAVVNNMSWYNSI---NVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSY 341 (362)
Q Consensus 284 ------------------~-~~~~~Iv~NsdW~~~~---~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~Y 341 (362)
+ .++++|++||+|+... .+.++++ +++++|++||+++. . +++++++||+|
T Consensus 437 ~e~i~~~~~y~~~~~~alG~d~k~~fv~~S~~~~~~~~~~~~~vi~-la~~~tl~r~~~~~------~-~~~~~i~~~~Y 508 (690)
T 3p0j_A 437 EKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDDFWVSVIG-IARKNLLSHVEELY------G-GEVRNAGQVIA 508 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTSEEEEHHHHHHHTHHHHHHHHHH-HHTTSCHHHHHHHT------T-SCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCeEEEECCchhccchhhHHHHHHH-HHHhhhHHHHHHHh------C-CCCcchHHHHH
Confidence 2 2479999999999875 3456776 99999999999753 2 46789999999
Q ss_pred hhHhHHhHHHHhhh
Q psy14958 342 QIFQSYDWAHLYKE 355 (362)
Q Consensus 342 pllQayDf~~L~~~ 355 (362)
|+|||||+++|..+
T Consensus 509 PlmQaaDi~~l~aD 522 (690)
T 3p0j_A 509 ALMRVATALMLSVS 522 (690)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHhhhhccCCC
Confidence 99999999998653
No 2
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.6e-35 Score=298.04 Aligned_cols=200 Identities=24% Similarity=0.322 Sum_probs=173.2
Q ss_pred hHHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccce
Q psy14958 32 FLSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELS 105 (362)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 105 (362)
.|.++|+ ++|.+++.|||| +||+|+++ +++.||+.| |++
T Consensus 21 ~L~~~L~----~~~~~iy~G~dPTg~sLHlGh~v~l~---------------~l~~lQ~~G--~~~-------------- 65 (419)
T 2ts1_A 21 GLRKLLN----EERVTLYCGFDPTADSLHIGHLATIL---------------TMRRFQQAG--HRP-------------- 65 (419)
T ss_dssp HHHHHHH----HSCCEEEEEECCSSSSCBGGGHHHHH---------------HHHHHHHTT--CEE--------------
T ss_pred HHHHHHc----CCCCEEEEeeCCCCCCccHHHHHHHH---------------HHHHHHHCC--CcE--------------
Confidence 4556664 679999999999 89999998 999999998 999
Q ss_pred eEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHH
Q psy14958 106 NGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFM 185 (362)
Q Consensus 106 ~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL 185 (362)
+++|||+||+|||||||+++|++|+.|+|.+|+++|++|+.++|+. .-+|+++.|++|++|+.++++.+||
T Consensus 66 i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~~L~~---------g~dp~k~~i~~ns~w~~~~~~~~~l 136 (419)
T 2ts1_A 66 IALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDF---------EADGNPAKIKNNYDWIGPLDVITFL 136 (419)
T ss_dssp EEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTTSSCS---------SCSSSCCEEEETHHHHTTCCHHHHH
T ss_pred EEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHHHHhc---------CCCCCceEEEEchhhhhhchHHHHH
Confidence 8999999999999999999999999999999999999999999873 1237889999999999999999999
Q ss_pred HHHHhhhhhhhhhhhc------------------------------------ccCccchhHHHhhcccchhcc-ccc---
Q psy14958 186 NHIARLFRMGDMLKKQ------------------------------------SVGGSDQMGNIKAGHDLISKL-YGK--- 225 (362)
Q Consensus 186 ~~lg~~f~v~~ML~Rd------------------------------------~iGGsDQ~~NI~rGrdLi~r~-~gq--- 225 (362)
+++|+++||++|++++ ++||+|||+||..||+++++. .+.
T Consensus 137 ~~~~~~~tv~rm~~~~~~k~r~~~~is~~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~ 216 (419)
T 2ts1_A 137 RDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAF 216 (419)
T ss_dssp HHTGGGCCHHHHHTSHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCE
T ss_pred HHHhcccCHHHHhccchhhhccCCCcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCee
Confidence 9999999999999986 249999999999999999975 332
Q ss_pred --eeeeec------cCCCCceeeccCC---CCCCcchhhHhHH---HHHHHHHHcCCceEEeecc
Q psy14958 226 --TVFDLL------VRTPQTVYAGFDP---TASSLHIGNLLIL---INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 226 --eLp~LL------~sksl~~YiG~dp---Ta~~lHlGhlmsi---l~lr~fq~~G~~~i~lIg~ 276 (362)
+.|.+. .|||.++||.+++ ||.++ +.+++.+ .+++|+..+.+.+...|..
T Consensus 217 ~lt~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i-~qki~~~~D~~v~~~l~l~t~~~~~ei~~ 280 (419)
T 2ts1_A 217 GLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEF-YQFWINTDDRDVIRYLKYFTFLSKEEIEA 280 (419)
T ss_dssp EEEECCCCCTTSCCTTCCSSCCCBSSTTTSCHHHH-HHHHHTCCHHHHHHHHHHHCCCCHHHHHH
T ss_pred ecccccccCCCcccccCCCCCeEecCCCCCCHHHH-HHHHhcCCchhHHHHHHHHHcCCHHHHHH
Confidence 234442 3789999999999 99888 9998887 6788998888866555444
No 3
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=3.4e-35 Score=295.66 Aligned_cols=200 Identities=26% Similarity=0.329 Sum_probs=172.8
Q ss_pred hhHHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccc
Q psy14958 31 YFLSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKEL 104 (362)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 104 (362)
+.|.++|+ ++|.+++.|||| +||+|+++ +++.||+.| |++
T Consensus 22 ~~L~~~L~----~~~~~iy~G~dPTg~sLHlGh~v~l~---------------~~~~lQ~~G--~~~------------- 67 (420)
T 1jil_A 22 QGIEDLLN----KEQVTLYCGADPTADSLHIGHLLPFL---------------TLRRFQEHG--HRP------------- 67 (420)
T ss_dssp HHHHHHHH----HSCCEEEEEECCSSSSCBHHHHHHHH---------------HHHHHHHTT--CEE-------------
T ss_pred HHHHHHHc----CCCCEEEEeeCCCCCCccHHHHHHHH---------------HHHHHHHCC--CcE-------------
Confidence 34666663 679999999999 89999998 999999998 999
Q ss_pred eeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHH
Q psy14958 105 SNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDF 184 (362)
Q Consensus 105 ~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~df 184 (362)
+++|||+||+|||||||+++|++|+.|+|.+|+++|.+|+.+++|. . +++++.|++|++|+.++++++|
T Consensus 68 -~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~~ld~---------~-~~~k~~i~~ns~w~~~~~~l~~ 136 (420)
T 1jil_A 68 -IVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEF---------G-TDHGAVLVNNRDWLGQISLISF 136 (420)
T ss_dssp -EEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHHSCC---------S-SSSSCEEEETHHHHTTCCHHHH
T ss_pred -EEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHHHhCC---------C-CCCceEEEEchhhhhhccHHHH
Confidence 8999999999999999999999999999999999999999999872 1 2478999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhcc------------------------------------cCccchhHHHhhcccchhcc-ccc--
Q psy14958 185 MNHIARLFRMGDMLKKQS------------------------------------VGGSDQMGNIKAGHDLISKL-YGK-- 225 (362)
Q Consensus 185 L~~lg~~f~v~~ML~Rd~------------------------------------iGGsDQ~~NI~rGrdLi~r~-~gq-- 225 (362)
|+++|+++||++|+++++ +||+|||+||..|||++++. .+.
T Consensus 137 l~~~~~~~tv~~m~~~~~~k~r~~~~is~~ef~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~ 216 (420)
T 1jil_A 137 LRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDA 216 (420)
T ss_dssp HHHTGGGCCHHHHHTCGGGHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhccccHHHHhcchhhhhhccCCcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCe
Confidence 999999999999999872 49999999999999999976 332
Q ss_pred ---eeeeec------cCCCCceeeccCC---CCCCcchhhHhHH---HHHHHHHHcCCceEEeecc
Q psy14958 226 ---TVFDLL------VRTPQTVYAGFDP---TASSLHIGNLLIL---INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 226 ---eLp~LL------~sksl~~YiG~dp---Ta~~lHlGhlmsi---l~lr~fq~~G~~~i~lIg~ 276 (362)
+.|.+. .|||.++||.+++ ||.++ +.+++.+ .+++|+..+.+.+...|..
T Consensus 217 ~~l~~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i-~~ki~~~~D~~v~~~l~~~t~~~~~ei~~ 281 (420)
T 1jil_A 217 YGLTIPLVTKSDGKKFGKSESGAVWLDAEKTSPYEF-YQFWINQSDEDVIKFLKYFTFLGKEEIDR 281 (420)
T ss_dssp EEEEECCCBCTTSCBTTBCSSSBCBSSTTTSCHHHH-HHHHHTCCHHHHHHHHHHHCCCCHHHHHH
T ss_pred eEeecccccCCccccccCCCCCeEecCCCCCCHHHH-HHHHhcCCchhHHHHHHHHHcCCHHHHHH
Confidence 234432 3789999999999 99888 8998887 6788888888765444433
No 4
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=8.7e-35 Score=293.65 Aligned_cols=212 Identities=18% Similarity=0.250 Sum_probs=158.3
Q ss_pred hhHHHHHHHHhc-Cchh-----hHHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhh
Q psy14958 16 AMNCREILSEIF-GLKY-----FLSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYS 83 (362)
Q Consensus 16 ~~~~~~~~~~~~-g~~~-----~~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (362)
.|++.+.++.+. |+.+ .|.++|+ +++|++++.|||| +||+|+++ +++.||
T Consensus 5 ~~~~~~~~~li~Rg~~e~~~~~~L~~~L~---~~~~~~vy~G~dPTg~sLHlGh~v~l~---------------~l~~lQ 66 (432)
T 1h3f_A 5 GHTPEEALALLKRGAEEIVPEEELLAKLK---EGRPLTVKLGADPTRPDLHLGHAVVLR---------------KMRQFQ 66 (432)
T ss_dssp CCCHHHHHHHHHTTCSEEETHHHHHHHHH---TCSCCEEEEEECTTCCSCBHHHHHHHH---------------HHHHHH
T ss_pred CCCHHHHHHHHHcchHHhCCHHHHHHHHh---cCCCcEEEEcccCCCCCCchhhHHHHH---------------HHHHHH
Confidence 356777887776 7744 4445553 5789999999999 79999998 999999
Q ss_pred hcCCCccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q psy14958 84 QQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDS 163 (362)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~ 163 (362)
+.| |++ +++|||+||+|||||||+++|++++.|+|.+|+++|..|+.+++|+ +
T Consensus 67 ~~G--~~~--------------i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~~~ld~-----------~ 119 (432)
T 1h3f_A 67 ELG--HKV--------------VLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQ-----------E 119 (432)
T ss_dssp HTT--CEE--------------EEEECCCC---------------------HHHHHHHHHHHTTTSCC-----------C
T ss_pred HCC--CCE--------------EEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcC-----------C
Confidence 999 998 8999999999999999999999999999999999999999988873 2
Q ss_pred CCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhhhhc----------------------------------ccCccchh
Q psy14958 164 LKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQ----------------------------------SVGGSDQM 209 (362)
Q Consensus 164 ~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~Rd----------------------------------~iGGsDQ~ 209 (362)
|++++|++||+|+.++++.+|++ +++++|+++||+|+ ++||+|||
T Consensus 120 p~k~~i~~nSd~~~~~~~~~~l~-l~~~~tv~~ml~~~~~k~r~~~~~~is~~ef~YPlLQaaDil~l~~~l~~gG~DQ~ 198 (432)
T 1h3f_A 120 PHLFELRYNSEWLEGLTFKEVVR-LTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQR 198 (432)
T ss_dssp TTTEEEEETHHHHTTCBHHHHHH-HHTTSBHHHHTTSHHHHHHHHTTCCCBGGGGTHHHHHHHHHHHHTCSEEEEEGGGH
T ss_pred CCceEEEECCcccccCcHHHHHH-HhCcCcHHHHHhhhhHHHHhhcCCCCCccccchhhHHhhhhhhcCccEEEechHHH
Confidence 78899999999999999999999 89999999999886 25999999
Q ss_pred HHHhhcccchhccccc-----eeeeec-------cCCCCceeeccCCCCCCcchhhHhHH---HHHHHHHHcCCceEEee
Q psy14958 210 GNIKAGHDLISKLYGK-----TVFDLL-------VRTPQTVYAGFDPTASSLHIGNLLIL---INLIHWQRAGHQVIALM 274 (362)
Q Consensus 210 ~NI~rGrdLi~r~~gq-----eLp~LL-------~sksl~~YiG~dpTa~~lHlGhlmsi---l~lr~fq~~G~~~i~lI 274 (362)
+||..|++++++.... +.|.+. .|||.++||++++||.++ ..+++.+ .+++|+..+.+.+...|
T Consensus 199 ~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~dsp~~i-~~Ki~~~~d~~v~~~l~~ft~~~~eei 277 (432)
T 1h3f_A 199 FNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTEPPEAM-FKKLMRVPDPLLPSYFRLLTDLEEEEI 277 (432)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTSCHHHH-HHHHHTSCGGGHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCeeCCCCCHHHH-HHHHhCCCccHHHHHHHHcCCCCHHHH
Confidence 9999999999864322 234332 267889999999999888 8888887 67788887776654443
No 5
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.8e-33 Score=284.08 Aligned_cols=199 Identities=24% Similarity=0.298 Sum_probs=171.9
Q ss_pred hHHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccce
Q psy14958 32 FLSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELS 105 (362)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 105 (362)
.|.++|+ ++|.+++.|||| +||+++++ +++.||+.| |.+
T Consensus 23 ~L~~~L~----~~~~~iy~G~dPTg~sLHLGhlv~l~---------------~l~~lQ~~G--~~~-------------- 67 (432)
T 2jan_A 23 TLAAEAQ----RGPMTVYAGFDPTAPSLHAGHLVPLL---------------TLRRFQRAG--HRP-------------- 67 (432)
T ss_dssp HHHHHHH----HSCCEEEEEECCSSSSCBGGGHHHHH---------------HHHHHHHTT--CEE--------------
T ss_pred HHHHHHc----CCCCEEEEeeCCCCCCcCHHHHHHHH---------------HHHHHHHCC--CcE--------------
Confidence 4556664 679999999999 89999999 999999999 998
Q ss_pred eEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHH
Q psy14958 106 NGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFM 185 (362)
Q Consensus 106 ~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL 185 (362)
+++|||+||+||||| |+++|++++.|+|.+|+++|++|+.++|+. .-+|++++|++||+|+.++++.+||
T Consensus 68 i~lIgD~ta~igdps-k~~~R~~~~~e~i~~n~~~~~~~~~~~La~---------G~dp~k~~i~~nsdw~~~~~~l~~l 137 (432)
T 2jan_A 68 IVLAGGATGMIGDPR-DVGERSLNEADTVAEWTERIRGQLERFVDF---------DDSPMGAIVENNLEWTGSLSAIEFL 137 (432)
T ss_dssp EEEECHHHHHHHCCC-CTTTSGGGHHHHHHHHHHHHHHHHHHHSCC---------SSSTTCCEEEETHHHHSSCBHHHHH
T ss_pred EEEEcCcEEEccCCc-ccccccCCCHHHHHHHHHHHHHHHHHHHhc---------CCCCCceEEEECchhcccCcHHHHH
Confidence 899999999999999 999999999999999999999999999973 1237889999999999999999999
Q ss_pred HHHHhhhhhhhhhhhc-------------------------------------ccCccchhHHHhhcccchhccccce--
Q psy14958 186 NHIARLFRMGDMLKKQ-------------------------------------SVGGSDQMGNIKAGHDLISKLYGKT-- 226 (362)
Q Consensus 186 ~~lg~~f~v~~ML~Rd-------------------------------------~iGGsDQ~~NI~rGrdLi~r~~gqe-- 226 (362)
+++|+++||++|++++ ++||+|||+||..||+++++....+
T Consensus 138 r~l~~~~tv~~m~~~~~~k~r~~~~~is~~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~ 217 (432)
T 2jan_A 138 RDIGKHFSVNVMLARDTIRRRLAGEGISYTEFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVH 217 (432)
T ss_dssp HHTGGGCBHHHHHHSHHHHHHTSTTCCBHHHHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCE
T ss_pred HHHhccCcHHHHhcchHHhhhhcCCCcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999986 1499999999999999998754332
Q ss_pred ---eeeec------cCCCCce-eeccCC---CCCCcchhhHhHH---HHHHHHHHcCCceEEeecc
Q psy14958 227 ---VFDLL------VRTPQTV-YAGFDP---TASSLHIGNLLIL---INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 227 ---Lp~LL------~sksl~~-YiG~dp---Ta~~lHlGhlmsi---l~lr~fq~~G~~~i~lIg~ 276 (362)
.|.+. .|||.++ ||.+++ ||.++ +.+++.+ .+++|+..+.+.+...|..
T Consensus 218 ~l~~plL~~ldG~KMSKS~~nsaI~L~d~~tsp~~i-~qki~~~~D~~v~~~l~l~t~~~~~ei~~ 282 (432)
T 2jan_A 218 ALTVPLVTAADGTKFGKSTGGGSLWLDPQMTSPYAW-YQYFVNTADADVIRYLRWFTFLSADELAE 282 (432)
T ss_dssp EEECCCCBCTTSCBTTBCSSSCBCBSSTTTSCHHHH-HHHHHTCCHHHHHHHHHHHSCCCHHHHHH
T ss_pred ccccccccCCCcCcCCCCCCCCeEEccCCCCCHHHH-HHHHhcCCchhHHHHHHHHHcCChHHHHH
Confidence 33332 2789999 999999 99888 8898887 6788888888765444433
No 6
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=99.97 E-value=4.5e-32 Score=267.80 Aligned_cols=204 Identities=31% Similarity=0.472 Sum_probs=158.4
Q ss_pred hhHHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccc
Q psy14958 31 YFLSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKEL 104 (362)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 104 (362)
+.|.++|++..+|+|.+++.|+|| +||++++. +++.||+.| |++
T Consensus 32 ~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~---------------~~~~lQ~~G--~~~------------- 81 (356)
T 2pid_A 32 IELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALL---------------GLFHLQRAG--HNV------------- 81 (356)
T ss_dssp SCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHH---------------HHHHHHHTT--CEE-------------
T ss_pred HHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHH---------------HHHHHHHCC--CcE-------------
Confidence 467777876667889999999999 79999998 999999998 998
Q ss_pred eeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHH
Q psy14958 105 SNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDF 184 (362)
Q Consensus 105 ~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~df 184 (362)
+++|||+||+|||||||+++|+.++.|+|.+|++.|..|+.+++|....++ ...-+.++++|++|++|+.++++.+|
T Consensus 82 -~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~lDp~~~~~--qs~~~~~~~~i~~ns~w~~~~~~~~~ 158 (356)
T 2pid_A 82 -IALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEALAANHQQLF--TDGRSWGSFTVLDNSAWYQKQHLVDF 158 (356)
T ss_dssp -EEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHS--CCSSCCCCEEEEETHHHHTTCBHHHH
T ss_pred -EEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHHhcChhhccc--cccCCCcceEEEechHhhhhccHHHH
Confidence 899999999999999999999999999999999999999999998643333 11112357999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhcc--------------------------------------cCccchhHHHhhcccchhccccce
Q psy14958 185 MNHIARLFRMGDMLKKQS--------------------------------------VGGSDQMGNIKAGHDLISKLYGKT 226 (362)
Q Consensus 185 L~~lg~~f~v~~ML~Rd~--------------------------------------iGGsDQ~~NI~rGrdLi~r~~gqe 226 (362)
+++++++++|++|+++++ +||+|||+||..||+++++....+
T Consensus 159 l~~~~~~~~v~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~ 238 (356)
T 2pid_A 159 LAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGED 238 (356)
T ss_dssp HHHHGGGSBHHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCC
T ss_pred HHHHhcceeHHHHhcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999861 499999999999999998754332
Q ss_pred -----eeeec------cCCCCceeeccCC---CCCCcchhhHhHH---HHHHHHHHcCC
Q psy14958 227 -----VFDLL------VRTPQTVYAGFDP---TASSLHIGNLLIL---INLIHWQRAGH 268 (362)
Q Consensus 227 -----Lp~LL------~sksl~~YiG~dp---Ta~~lHlGhlmsi---l~lr~fq~~G~ 268 (362)
.|.+. .|||.+++|.+++ +|.++ ..+++.+ -+.+|+..+.+
T Consensus 239 ~~~l~~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i-~~ki~~~~D~~v~~~l~~~t~ 296 (356)
T 2pid_A 239 VFGITVPLITSTTGAKLGKSAGNAVWLNRDKTSPFEL-YQFFVRQPDDSVERYLKLFTF 296 (356)
T ss_dssp CEEEEECCCC-------------CCBSSTTTSCHHHH-HHHHHTCCHHHHHHHHHHHCC
T ss_pred ccccccccccCCCcccccCCCCCeeeccCCCCCHHHH-HHHHHcCCchhHHHHHHHHHc
Confidence 23332 3789999999999 88877 7777764 33444444443
No 7
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=99.97 E-value=3.1e-32 Score=272.04 Aligned_cols=183 Identities=27% Similarity=0.442 Sum_probs=141.1
Q ss_pred CCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCcccc
Q psy14958 42 ASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQ 115 (362)
Q Consensus 42 ~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~ 115 (362)
+++|.+++.|||| +||+|++. +++.||+.| |.+ +++|||+||+
T Consensus 61 ~~~~~~vy~G~dPTg~sLHlGhlv~l~---------------~l~~lQ~~G--~~~--------------~~lIgD~hal 109 (392)
T 1y42_X 61 RTRRIGAYVGIDPTAPSLHVGHLLPLM---------------PLFWMYLEG--YKA--------------FTLIGGSTAK 109 (392)
T ss_dssp HHCCCEEEEEECCCSSSCBGGGHHHHH---------------HHHHHHHHT--CEE--------------EEEECTTTTT
T ss_pred cCCCCEEEEeecCCCCCccHHHHHHHH---------------HHHHHHHcC--CcE--------------EEEEcCceeE
Confidence 3668999999999 89999998 999999999 998 8999999999
Q ss_pred ccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cc-CCCCCCcEEEeChhhhccCCHHHHHHHHHhhhh
Q psy14958 116 VGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWK-DR-KDSLKPPIVVNNMSWYNSINVIDFMNHIARLFR 193 (362)
Q Consensus 116 IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~-~~-~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~ 193 (362)
|||||||+++|+.++.|+|.+|++.|..|+.+++++...+.++ +. .+.++++.|++|++|+.++++++||+++|++|+
T Consensus 110 igdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~ 189 (392)
T 1y42_X 110 IGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALR 189 (392)
T ss_dssp TCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCC
T ss_pred eCCCCCcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999742211100 01 122578899999999999999999999999999
Q ss_pred hhhhhhhc--------------------------------------ccCccchhHHHhhcccchhccc------------
Q psy14958 194 MGDMLKKQ--------------------------------------SVGGSDQMGNIKAGHDLISKLY------------ 223 (362)
Q Consensus 194 v~~ML~Rd--------------------------------------~iGGsDQ~~NI~rGrdLi~r~~------------ 223 (362)
|++|++|+ ++||+|||+||..|||++++..
T Consensus 190 v~rml~~~~~k~r~~~~~~is~gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~ 269 (392)
T 1y42_X 190 IGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYV 269 (392)
T ss_dssp HHHHHSSHHHHHTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHhhhhHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhcccccccccc
Confidence 99999875 1499999999999999997631
Q ss_pred ------cc----eeeeec------cCCCCceeeccCC---CCCCcchhhHhH
Q psy14958 224 ------GK----TVFDLL------VRTPQTVYAGFDP---TASSLHIGNLLI 256 (362)
Q Consensus 224 ------gq----eLp~LL------~sksl~~YiG~dp---Ta~~lHlGhlms 256 (362)
+. +.|.+. .|||.+++|.+++ ||.++ +.+++.
T Consensus 270 ~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d~~tsp~~i-~qki~~ 320 (392)
T 1y42_X 270 TPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDPYQTSVFDF-YGYFVR 320 (392)
T ss_dssp SCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSSTTTSCHHHH-HHHHHT
T ss_pred ccccccCCccccccccCcCCchhhccCCCCCeeeccCCCCCHHHH-HHHHHc
Confidence 11 123332 2789999999999 77666 666664
No 8
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=99.97 E-value=1.2e-31 Score=269.89 Aligned_cols=149 Identities=36% Similarity=0.579 Sum_probs=130.4
Q ss_pred HHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhh--------
Q psy14958 211 NIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------- 282 (362)
Q Consensus 211 NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~-------- 282 (362)
.+.||...+. ...+++..+|.+++..+|+||||||+|+|+||++++++|++||++||+++++|||+|+++.
T Consensus 9 l~~Rg~~~~~-~~~~~L~~~L~~~~~~iy~G~dPTg~sLHlGh~v~l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~ 87 (420)
T 1jil_A 9 LKWRGLIYQQ-TDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEE 87 (420)
T ss_dssp HHHTTCCCCB-SCHHHHHHHHHHSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSC
T ss_pred HHHcCchhhc-CCHHHHHHHHcCCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCCcEEEEEcCceeEecCCCccccc
Confidence 4558876643 1235677777778999999999999999999999999999999999999999999662220
Q ss_pred -----------------------cCC---CceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcc
Q psy14958 283 -----------------------RTC---NEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNY 336 (362)
Q Consensus 283 -----------------------~~~---~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~ 336 (362)
-++ ++++|++|++|+.++++.+|++++++++|+++|+++++|++|+ ++++|+
T Consensus 88 R~~l~~e~i~~n~~~~~~~~~~~ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~--~~~is~ 165 (420)
T 1jil_A 88 RVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL--EHGISY 165 (420)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHSCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH--TTTCCH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc--cCCcch
Confidence 024 6899999999999999999999999999999999999999999 378999
Q ss_pred hhhhhhhHhHHhHHHHhhhcCceecC
Q psy14958 337 TEFSYQIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 337 ~Ef~YpllQayDf~~L~~~~~~~~Qi 362 (362)
+||+||+||||||++|+++|+|.+|+
T Consensus 166 ~ef~YplLQaaD~l~l~~~~~~~i~~ 191 (420)
T 1jil_A 166 TEFTYTILQAIDFGHLNRELNCKIQV 191 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEe
Confidence 99999999999999999999999984
No 9
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=99.97 E-value=9.7e-32 Score=270.56 Aligned_cols=149 Identities=35% Similarity=0.608 Sum_probs=130.0
Q ss_pred HHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHh---------
Q psy14958 211 NIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL--------- 281 (362)
Q Consensus 211 NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l--------- 281 (362)
.+.||...+. ...+++..++.++++.+|+||||||+|+|+||++++++|++||++||+++++|||+|+++
T Consensus 7 L~~Rg~~~~~-~~~~~L~~~L~~~~~~iy~G~dPTg~sLHlGh~v~l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~ 85 (419)
T 2ts1_A 7 LQWRGLVNQT-TDEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSE 85 (419)
T ss_dssp HHHHTCCSEE-SCHHHHHHHHHHSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSC
T ss_pred HHHcCchhhc-CCHHHHHHHHcCCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCCcEEEEEcCceeEecCCCCcccc
Confidence 4557876643 123457777777889999999999999999999999999999999999999999966221
Q ss_pred ------------------------h--cCCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCc
Q psy14958 282 ------------------------W--RTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMN 335 (362)
Q Consensus 282 ------------------------~--~~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis 335 (362)
. -+++++.|++|++|+.++++.+||+++++++|+++|+++++|++|+ ++++|
T Consensus 86 R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~--~~~is 163 (419)
T 2ts1_A 86 RTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRI--ETGIS 163 (419)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTT--TTCCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhcc--CCCcc
Confidence 0 0266899999999999999999999999999999999999999999 37899
Q ss_pred chhhhhhhHhHHhHHHHhhhcCceecC
Q psy14958 336 YTEFSYQIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 336 ~~Ef~YpllQayDf~~L~~~~~~~~Qi 362 (362)
++||+||+||||||++|+++|+|.+|+
T Consensus 164 ~~ef~YPlLQaaDil~l~~~~~~~i~~ 190 (419)
T 2ts1_A 164 FTEFSYMMLQAYDFLRLYETEGCRLQI 190 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhccCCCcEEe
Confidence 999999999999999999999999984
No 10
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=99.97 E-value=2.8e-31 Score=268.11 Aligned_cols=151 Identities=36% Similarity=0.553 Sum_probs=131.4
Q ss_pred HHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHh--------
Q psy14958 210 GNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL-------- 281 (362)
Q Consensus 210 ~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l-------- 281 (362)
..+.||...+. ...+++..++.++++.+|+||||||+++|+||++++++|++||++||+++++|||+|+++
T Consensus 8 ~L~~RG~~~~~-~~~e~L~~~L~~~~~~iy~G~dPTg~sLHLGhlv~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~ 86 (432)
T 2jan_A 8 ELSWRGLIAQS-TDLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGE 86 (432)
T ss_dssp HHHHHTCCSEE-SCHHHHHHHHHHSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTT
T ss_pred HHHHcCchhhc-CCHHHHHHHHcCCCCEEEEeeCCCCCCcCHHHHHHHHHHHHHHHCCCcEEEEEcCcEEEccCCccccc
Confidence 34568877643 123457677777889999999999999999999999999999999999999999966222
Q ss_pred ------------------------hc--CCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCc
Q psy14958 282 ------------------------WR--TCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMN 335 (362)
Q Consensus 282 ------------------------~~--~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis 335 (362)
.- ++++++|++|++|+.++++++|++++++++|+++|+++++|++|+ +++++|
T Consensus 87 R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~-~~~~is 165 (432)
T 2jan_A 87 RSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL-AGEGIS 165 (432)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT-STTCCB
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh-cCCCcc
Confidence 10 267899999999999999999999999999999999999999999 457899
Q ss_pred chhhhhhhHhHHhHHHHhhhcCceecC
Q psy14958 336 YTEFSYQIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 336 ~~Ef~YpllQayDf~~L~~~~~~~~Qi 362 (362)
++||+||+||||||++|+++|+|.+|+
T Consensus 166 ~~ef~YPlLQaaDil~l~~~~~~~i~~ 192 (432)
T 2jan_A 166 YTEFSYLLLQANDYVELHRRHGCTLQI 192 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred hHHHHHHHHHHHHHHHHhccCCCcEEe
Confidence 999999999999999999999999984
No 11
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=99.97 E-value=5.7e-31 Score=262.95 Aligned_cols=151 Identities=25% Similarity=0.497 Sum_probs=129.0
Q ss_pred HHhhcccchhccc-cceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHh--------
Q psy14958 211 NIKAGHDLISKLY-GKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL-------- 281 (362)
Q Consensus 211 NI~rGrdLi~r~~-gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l-------- 281 (362)
.+.||...+. .. .+.+..++.+++..+|+||||||+|+|+||++++++|++||++||+++++|||+|+++
T Consensus 40 L~~Rg~~~~~-~~~~e~l~~ll~~~~~~vy~G~dPTg~sLHlGhlv~l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~ 118 (392)
T 1y42_X 40 FEERGYVKDT-AGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLK 118 (392)
T ss_dssp HHHHTCCSCE-ESCHHHHHHHHHHCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHHTCEEEEEECTTTTTTCCCCC---
T ss_pred HHHCCcHHhh-cCCHHHHHHHHcCCCCEEEEeecCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCceeEeCCCCCcch
Confidence 3447765521 11 2346666777889999999999999999999999999999999999999999955111
Q ss_pred ----------------------h--c-----------C---CCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhH
Q psy14958 282 ----------------------W--R-----------T---CNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQS 323 (362)
Q Consensus 282 ----------------------~--~-----------~---~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~ 323 (362)
. + + ++++.|++|++|+.++++.+|++++|+++|+++|+++++
T Consensus 119 ~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~ 198 (392)
T 1y42_X 119 SRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDT 198 (392)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhH
Confidence 0 1 1 357899999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCcchhhhhhhHhHHhHHHHhhhcCceecC
Q psy14958 324 VVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 324 ~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~~~~~~~Qi 362 (362)
|+.|+++++++|++||+||+||||||++|+++|+|.+|+
T Consensus 199 ~k~r~~~~~~is~gef~YPlLQAaDil~l~~~~~~~i~~ 237 (392)
T 1y42_X 199 VKNKMTQGDGVSFAEFTYPIMQGWDWFELFYQQGVQMQI 237 (392)
T ss_dssp HHHTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHhccCCccEEe
Confidence 999998777899999999999999999999999999984
No 12
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=99.97 E-value=8.4e-31 Score=255.32 Aligned_cols=180 Identities=28% Similarity=0.402 Sum_probs=154.2
Q ss_pred hHHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccce
Q psy14958 32 FLSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELS 105 (362)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 105 (362)
.|.++++ ++|.+++.|+|| +||++++. +++.||+.| |.+
T Consensus 24 ~l~~~l~----~~~~~vy~G~~PTg~slHlGh~l~l~---------------~~~~lQ~~g--~~~-------------- 68 (322)
T 2yxn_A 24 ALAERLA----QGPIALVCGFDPTADSLHLGHLVPLL---------------CLKRFQQAG--HKP-------------- 68 (322)
T ss_dssp HHHHHHH----HSCCEEEEEECCSSSSCBHHHHHHHH---------------HHHHHHHTT--CEE--------------
T ss_pred HHHHHHc----CCCCEEEEeecCCCCcccHHHHHHHH---------------HHHHHHHcC--CcE--------------
Confidence 4445553 669999999999 79999988 999999999 998
Q ss_pred eEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHH
Q psy14958 106 NGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFM 185 (362)
Q Consensus 106 ~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL 185 (362)
+++|||+||+|||||||++||++++.|+|++|+++|++|+..+++.. -+|+++.|++|++|+.+++.++|+
T Consensus 69 ~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g---------~dp~k~~i~~qs~w~~~~~~l~~l 139 (322)
T 2yxn_A 69 VALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFD---------CGENSAIAANNYDWFGNMNVLTFL 139 (322)
T ss_dssp EEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGGGSCSS---------SGGGCCEEEETHHHHTTCCHHHHH
T ss_pred EEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHcC---------CCccceEEEecchhhccCcHHHHH
Confidence 89999999999999999999999999999999999999999998631 136789999999999999999999
Q ss_pred HHHHhhhhhhhhhhhcc---------------------------------------cCccchhHHHhhcccchhccccc-
Q psy14958 186 NHIARLFRMGDMLKKQS---------------------------------------VGGSDQMGNIKAGHDLISKLYGK- 225 (362)
Q Consensus 186 ~~lg~~f~v~~ML~Rd~---------------------------------------iGGsDQ~~NI~rGrdLi~r~~gq- 225 (362)
+++|++++|++|+++++ +||+||++||..||+++++....
T Consensus 140 ~~~~~~~~v~~m~~~~~~k~r~~~~~~~is~g~f~YP~LQaaDil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~ 219 (322)
T 2yxn_A 140 RDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQ 219 (322)
T ss_dssp HHTGGGCCHHHHTTCHHHHHHHHCTTCCCCHHHHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHhccccHHHHhhhHHHHHHhccCCCCccchhhhHHHHHHHHHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCC
Confidence 99999999999998761 58999999999999999875432
Q ss_pred ----eeeeec------cCCCCceeeccCC---CCCCcchhhHhH
Q psy14958 226 ----TVFDLL------VRTPQTVYAGFDP---TASSLHIGNLLI 256 (362)
Q Consensus 226 ----eLp~LL------~sksl~~YiG~dp---Ta~~lHlGhlms 256 (362)
+.|.+. .|||.+++|.+++ +|.++ ..+++.
T Consensus 220 ~~~l~~pll~gldG~KMSKS~~n~I~L~d~~tsp~~~-~~ki~~ 262 (322)
T 2yxn_A 220 VFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKF-YQFWIN 262 (322)
T ss_dssp CEEEECCCCBCTTSCBTTEETTEECBSSTTTSCHHHH-HHHHHT
T ss_pred ceeeccCccCCCCcccccCCCCCeeeccCCCCCHHHH-HHHHhC
Confidence 233332 2788889999999 88766 556554
No 13
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=99.96 E-value=6.7e-30 Score=258.04 Aligned_cols=148 Identities=21% Similarity=0.391 Sum_probs=129.1
Q ss_pred chhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhh---
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW--- 282 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~--- 282 (362)
+|+..|.||...+- ..+++..+|+ ++++.+|+||||||+++|+||++++++|++||++||+++++|||+|+++.
T Consensus 10 ~~~~li~Rg~~e~~--~~~~L~~~L~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l~~lQ~~G~~~i~lIgD~ta~igdps 87 (432)
T 1h3f_A 10 EALALLKRGAEEIV--PEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPS 87 (432)
T ss_dssp HHHHHHHTTCSEEE--THHHHHHHHHTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHTTCEEEEEECCCC-------
T ss_pred HHHHHHHcchHHhC--CHHHHHHHHhcCCCcEEEEcccCCCCCCchhhHHHHHHHHHHHHCCCCEEEEEccceEEecCCC
Confidence 48889999986653 4566777774 67899999999999999999999999999999999999999999662221
Q ss_pred --------------------------c--C--CCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCC
Q psy14958 283 --------------------------R--T--CNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEH 332 (362)
Q Consensus 283 --------------------------~--~--~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~ 332 (362)
. + +++++|++||+|+.++++.+|++ +++++|+++|+++++|++|+++++
T Consensus 88 gk~~~R~~l~~e~i~~n~~~~~~ql~~~ld~~p~k~~i~~nSd~~~~~~~~~~l~-l~~~~tv~~ml~~~~~k~r~~~~~ 166 (432)
T 1h3f_A 88 GRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVR-LTSLMTVAQMLEREDFKKRYEAGI 166 (432)
T ss_dssp --------------HHHHHHHHHHHTTTSCCCTTTEEEEETHHHHTTCBHHHHHH-HHTTSBHHHHTTSHHHHHHHHTTC
T ss_pred CcccccccCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEECCcccccCcHHHHHH-HhCcCcHHHHHhhhhHHHHhhcCC
Confidence 0 3 66899999999999999999999 899999999999999999998778
Q ss_pred CCcchhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 333 GMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 333 gis~~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
++|++||+||+||||||++++ |.+|
T Consensus 167 ~is~~ef~YPlLQaaDil~l~----~~l~ 191 (432)
T 1h3f_A 167 PISLHELLYPFAQAYDSVAIR----ADVE 191 (432)
T ss_dssp CCBGGGGTHHHHHHHHHHHHT----CSEE
T ss_pred CCCccccchhhHHhhhhhhcC----ccEE
Confidence 999999999999999999986 6665
No 14
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=99.96 E-value=6.5e-30 Score=249.06 Aligned_cols=151 Identities=32% Similarity=0.576 Sum_probs=130.0
Q ss_pred HHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhh--------
Q psy14958 211 NIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-------- 282 (362)
Q Consensus 211 NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~-------- 282 (362)
.+.||..++.. ..+++..++++++..+|+|||||++|+|+||+++++.|++||++||+++++|||+|++..
T Consensus 10 l~~Rg~~~~~~-~~~~l~~~l~~~~~~vy~G~~PTg~slHlGh~l~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~ 88 (322)
T 2yxn_A 10 LQERGLVAQVT-DEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAE 88 (322)
T ss_dssp HHHTTCCSEES-SHHHHHHHHHHSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSC
T ss_pred HHHCCceeeeC-CHHHHHHHHcCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEccceeeecCCCCcccc
Confidence 45578776542 134566666677899999999999999999999999999999999999999998653220
Q ss_pred -----------------c----------CCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhh-cCCCC
Q psy14958 283 -----------------R----------TCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLE-SEHGM 334 (362)
Q Consensus 283 -----------------~----------~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~-~~~gi 334 (362)
+ +++++.|++|++|+.++++.+|++++++++++++|+++++|+.|++ +++++
T Consensus 89 R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~~~~i 168 (322)
T 2yxn_A 89 RKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGI 168 (322)
T ss_dssp CCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCTTCCC
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccCCCCc
Confidence 0 2568999999999999999999999999999999999999999997 45789
Q ss_pred cchhhhhhhHhHHhHHHHhhhcCceecC
Q psy14958 335 NYTEFSYQIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 335 s~~Ef~YpllQayDf~~L~~~~~~~~Qi 362 (362)
+++||+||+||||||++++++|+|.+|+
T Consensus 169 s~g~f~YP~LQaaDil~l~~~~~~~v~~ 196 (322)
T 2yxn_A 169 SFTEFSYNLLQGYDFACLNKQYGVVLCI 196 (322)
T ss_dssp CHHHHTHHHHHHHHHHHHHHHHCEEEEE
T ss_pred cchhhhHHHHHHHHHHHHhccCCceEEe
Confidence 9999999999999999999999999884
No 15
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=99.96 E-value=2e-29 Score=248.91 Aligned_cols=151 Identities=41% Similarity=0.696 Sum_probs=127.7
Q ss_pred HHHhhcccchhccccc-----eeeeeccCC----CCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHH
Q psy14958 210 GNIKAGHDLISKLYGK-----TVFDLLVRT----PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQI 280 (362)
Q Consensus 210 ~NI~rGrdLi~r~~gq-----eLp~LL~sk----sl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~ 280 (362)
..+.||...+ ++.+ ++..+|+++ ++.+|+|||||++++|+||++++++|++||++||+++++|||+|++
T Consensus 14 ~l~~Rg~~~~--~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~G~~~~~lIaD~hal 91 (356)
T 2pid_A 14 AQKARGLFKD--FFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATAR 91 (356)
T ss_dssp HHHHHTSCCE--EECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGG
T ss_pred HHHHcCChhe--eCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHCCCcEEEEEccceee
Confidence 3455776643 2343 677777543 4899999999999999999999999999999999999999996632
Q ss_pred hhc-------------------------------CC-----------CceEEEechhhhcCCCHHHHHHHHHhhccHHHH
Q psy14958 281 LWR-------------------------------TC-----------NEEAVVNNMSWYNSINVIDFMNHIARLFRMGDM 318 (362)
Q Consensus 281 l~~-------------------------------~~-----------~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~m 318 (362)
..+ ++ ++++|++|++|+.++++++|++++++++|+++|
T Consensus 92 ~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m 171 (356)
T 2pid_A 92 LGDPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTL 171 (356)
T ss_dssp TCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHH
T ss_pred ecCCcccccccccCCHHHHHHHHHHHHHHHHHhcChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHH
Confidence 210 12 349999999999999999999999999999999
Q ss_pred HchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhhhcCceecC
Q psy14958 319 LKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 319 L~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~~~~~~~Qi 362 (362)
+++++|++|++++++++++||+||+||||||++++++|+|.+|+
T Consensus 172 ~~~~~~k~r~~~~~~is~g~f~YPvLQAaDil~l~~~~~~~i~p 215 (356)
T 2pid_A 172 LSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQL 215 (356)
T ss_dssp HHCHHHHHHHTSTTCCBHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred hcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHhccCCCcEEe
Confidence 99999999998767899999999999999999999999999973
No 16
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=99.93 E-value=1.5e-26 Score=227.52 Aligned_cols=150 Identities=16% Similarity=0.186 Sum_probs=113.8
Q ss_pred hhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhh-HhHHHHHHHHHHcCCceEEeecchhHHhh---
Q psy14958 208 QMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGN-LLILINLIHWQRAGHQVIALMICLSQILW--- 282 (362)
Q Consensus 208 Q~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGh-lmsil~lr~fq~~G~~~i~lIg~i~~~l~--- 282 (362)
|...+.||.+.+. ..+++..+|+ ++++.+|+|+|||+ ++|+|| ++++++|++||++||+++++|||+|+++.
T Consensus 14 ~~~l~~r~~~e~~--~~~~L~~~L~~~~~~~vy~G~~PTg-~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~ 90 (348)
T 2j5b_A 14 RLTQLLSIAEECE--TLDRLKQLVDSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKM 90 (348)
T ss_dssp HHHHHHTTCSEES--CHHHHHHHHHHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGG
T ss_pred HHHHHHcCccccc--CHHHHHHHHhcCCCCEEEeccCCCC-CCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCC
Confidence 7888999976663 4566777776 47899999999997 899999 89999999999999999999999774331
Q ss_pred ---------------------c-CCCceEEEechhhhcCC-CHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhh
Q psy14958 283 ---------------------R-TCNEEAVVNNMSWYNSI-NVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEF 339 (362)
Q Consensus 283 ---------------------~-~~~~~~Iv~NsdW~~~~-~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef 339 (362)
+ ++++++|++||+|+... .++++++++++++|+++|+++++++.|.+ +++++++||
T Consensus 91 ~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~-~~~i~~g~f 169 (348)
T 2j5b_A 91 NGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNE-SDCLKASQI 169 (348)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC------------------C
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhc-cCCcChHHH
Confidence 0 25689999999997543 68999988999999999999999999975 368999999
Q ss_pred hhhhHhHHhHHHHhhhcCceecC
Q psy14958 340 SYQIFQSYDWAHLYKEHNCRFQA 362 (362)
Q Consensus 340 ~YpllQayDf~~L~~~~~~~~Qi 362 (362)
+||+||||||+++++ ++|.+|+
T Consensus 170 ~YP~lQaaDil~~~~-~~~~~~~ 191 (348)
T 2j5b_A 170 FYPCMQAADVFELVP-EGIDICQ 191 (348)
T ss_dssp CHHHHHHHHHHHSST-TCCSEEC
T ss_pred hhHHHHHHHHHHHhc-CCCcEEE
Confidence 999999999999987 6888874
No 17
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=99.92 E-value=2.9e-26 Score=226.77 Aligned_cols=148 Identities=14% Similarity=0.199 Sum_probs=122.1
Q ss_pred chhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhhc--
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWR-- 283 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~~-- 283 (362)
+|+..+.||.+.+. +.+++..+++ ++++.+|+||+||+ ++|+||++++++|++||++||+++++|||+|+++.+
T Consensus 8 ~~~~l~~r~~~e~~--~~~~L~~~l~~~~~~~iy~G~~PTg-~lHlG~l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps 84 (364)
T 2cya_A 8 ERFNRIARNTVEIV--TEEELKGLLASGARIKGYIGYEPSG-VAHIGWLVWMYKVKDLVEAGVDFSVLEATWHAYINDKL 84 (364)
T ss_dssp HHHHHHHTTCSEEE--THHHHHHHHHHCSCCEEEEEECCCS-SCBTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTTGG
T ss_pred HHHHHHHcCchhcC--CHHHHHHHHhcCCCCEEEeccCCCC-CccHhHHHHHHHHHHHHHCCCCEEEEEeCcchhhCCCC
Confidence 38888999976663 4566777776 46899999999999 599999999999999999999999999998754420
Q ss_pred -----------------------CCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhh
Q psy14958 284 -----------------------TCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFS 340 (362)
Q Consensus 284 -----------------------~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~ 340 (362)
++++++|++||+|+.+..+++++..+++++|+++|+++++|+.|.++++++++++|+
T Consensus 85 ~~~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~ 164 (364)
T 2cya_A 85 GGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLI 164 (364)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhh
Confidence 356899999999998867889888999999999999999999999866679999999
Q ss_pred hhhHhHHhHHHHhhhcCceec
Q psy14958 341 YQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 341 YpllQayDf~~L~~~~~~~~Q 361 (362)
||+|||||+++ |+|.+|
T Consensus 165 YP~LQaaDil~----~~~~~v 181 (364)
T 2cya_A 165 YPLMQVSDIFY----MDLDIA 181 (364)
T ss_dssp HHHHHHHHHHH----TTCSEE
T ss_pred hHHHHHhhHHh----cCCCEE
Confidence 99999999998 566665
No 18
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=99.92 E-value=2.6e-26 Score=232.14 Aligned_cols=170 Identities=13% Similarity=0.210 Sum_probs=139.0
Q ss_pred cCCHHHHHHHHHhhhhhhhhhhh-cccCccchhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhHh
Q psy14958 178 SINVIDFMNHIARLFRMGDMLKK-QSVGGSDQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNLL 255 (362)
Q Consensus 178 ~m~~~dfL~~lg~~f~v~~ML~R-d~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhlm 255 (362)
.+++..+++.+|..---..+|+| +.+.|...+..+.||.-+.++.. +.+..+++ ++++.+|+||||||++||+||++
T Consensus 50 ~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~-~~l~~~l~~~~~~~vy~G~dPTag~LHLGh~v 128 (437)
T 1r6u_A 50 GIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDM-NQVLDAYENKKPFYLYTGRGPSSEAMHVGHLI 128 (437)
T ss_dssp CSCTTTHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHHTSEEEEESH-HHHHHHHTTTCCEEEEEEECCCSSCCBHHHHH
T ss_pred ccCHHHHHHHhCCCCCCHHHHHHHHHHhCCCcHHHHhCCCccCCCCH-HHHHHHHhcCCCcEEEEcccCCCCCccHHHHH
Confidence 48888899987775544678888 46778888999999995554221 12333344 46899999999998899999999
Q ss_pred HHHHHHHHHH-cCCceEEeecchhHHhhc-----------------------CCCceEEEechhhhcCCCHHHHHHHHHh
Q psy14958 256 ILINLIHWQR-AGHQVIALMICLSQILWR-----------------------TCNEEAVVNNMSWYNSINVIDFMNHIAR 311 (362)
Q Consensus 256 sil~lr~fq~-~G~~~i~lIg~i~~~l~~-----------------------~~~~~~Iv~NsdW~~~~~~~dfL~~vgk 311 (362)
++++++|||+ +||+++++|||+|+++.+ ++++++|++||+|..++ .+|++++
T Consensus 129 ~~~~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~~~l--~~~~~l~-- 204 (437)
T 1r6u_A 129 PFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMS--SGFYKNV-- 204 (437)
T ss_dssp HHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGGGC--TTHHHHH--
T ss_pred HHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEechhhhhhH--HHHHHHH--
Confidence 9999999999 999999999998744321 25689999999999865 3788866
Q ss_pred hccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHh
Q psy14958 312 LFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLY 353 (362)
Q Consensus 312 ~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~ 353 (362)
.+|++|++++++++|+..+++++++||+||+||||||++|+
T Consensus 205 -~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~ 245 (437)
T 1r6u_A 205 -VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNS 245 (437)
T ss_dssp -HHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGG
T ss_pred -HHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhh
Confidence 48999999999999997667899999999999999999986
No 19
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.5e-25 Score=222.56 Aligned_cols=147 Identities=12% Similarity=0.221 Sum_probs=125.2
Q ss_pred chhHHHhhc-ccchhccccceeeeecc-CCCCceeeccCCCCCCcchhh-HhHHHHHHHHHHcCCceEEeecchhHHhh-
Q psy14958 207 DQMGNIKAG-HDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGN-LLILINLIHWQRAGHQVIALMICLSQILW- 282 (362)
Q Consensus 207 DQ~~NI~rG-rdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGh-lmsil~lr~fq~~G~~~i~lIg~i~~~l~- 282 (362)
+|...+.|| .+.+. +.+++..+++ ++++.+|+|||||+ ++|+|| ++++++|++||++||+++++|||+|+++.
T Consensus 5 ~~~~l~~r~~~~e~~--~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~ 81 (375)
T 2cyc_A 5 ERINLVLKKPTEEVL--TVENLRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWIND 81 (375)
T ss_dssp HHHHHHHSTTEEEEE--THHHHHHHHHHTCCCBEEEEECCCS-CCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTT
T ss_pred HHHHHHhcCCceeec--CHHHHHHHHhcCCCcEEEeCCCCCC-CcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCC
Confidence 377888899 77663 3456666665 46899999999999 899999 99999999999999999999999662221
Q ss_pred ----------------------c-------CCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCC
Q psy14958 283 ----------------------R-------TCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHG 333 (362)
Q Consensus 283 ----------------------~-------~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~g 333 (362)
. ++++++|++||+|..+..++.++..+++++|+++|+++++|+.|.+ +++
T Consensus 82 ~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~-~~~ 160 (375)
T 2cyc_A 82 KLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQM-GEA 160 (375)
T ss_dssp GGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCC-CTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhcc-CCC
Confidence 0 3568999999999998878999888999999999999999999996 367
Q ss_pred CcchhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 334 MNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 334 is~~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
+++++|+||+||||||++ |+|.+|
T Consensus 161 i~~g~f~YP~LQaaDil~----~~~~~v 184 (375)
T 2cyc_A 161 IDFAKLIYPMMQVADIFY----QGVTIA 184 (375)
T ss_dssp CBTHHHHHHHHHHHHHHH----TTCSEE
T ss_pred CChHHHHHHHHHHHHHHH----hCCCee
Confidence 999999999999999999 466665
No 20
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=99.92 E-value=1.7e-25 Score=217.06 Aligned_cols=145 Identities=20% Similarity=0.292 Sum_probs=124.2
Q ss_pred chhHHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhhc---
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWR--- 283 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~~--- 283 (362)
||...+.||.+++. ..+++..+|.++++.+|+|||||+ ++|+||+++++.|++||++|++++++|||+|++..+
T Consensus 2 ~~~~l~~r~~~e~~--~~~~l~~~L~~~~~~vy~G~~PTg-~lHlGhl~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~ 78 (314)
T 2zp1_A 2 DEFEMIKRNTSEII--SEEELREVLKKDEKSAYIGFEPSG-KIHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQKGE 78 (314)
T ss_dssp CHHHHHHTTCSEEE--THHHHHHHHTSSSEEEEEEECCCS-SCBHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCC
T ss_pred cHHHHHHcCCeecC--CHHHHHHHHcCCCCEEEEccCCCC-CcchhhHHHHHHHHHHHHCCCCEEEEEecceEecCCCCC
Confidence 58888999977663 446677778777899999999999 699999999999999999999999999998755421
Q ss_pred ------------------CCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHh
Q psy14958 284 ------------------TCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQ 345 (362)
Q Consensus 284 ------------------~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQ 345 (362)
+.+ ++|++||+|+.+..+++++..+++++|+++|+++.+++.|.+ +++ +++||+||+||
T Consensus 79 ~e~i~~~~~~~~~~~~a~G~d-~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~-~~~-~~g~~~YP~LQ 155 (314)
T 2zp1_A 79 LDEIRKIGDYNKKVFEAMGLK-AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED-ENP-KVAEVIYPIMQ 155 (314)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCC-SSC-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCC-eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhcc-CCC-CchhhhhHHHH
Confidence 234 899999999988778999999999999999999988888874 345 99999999999
Q ss_pred HHhHHHHhhhcCceec
Q psy14958 346 SYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 346 ayDf~~L~~~~~~~~Q 361 (362)
||||+++ +|.+|
T Consensus 156 aaDil~~----~~~~v 167 (314)
T 2zp1_A 156 VNTSHYL----GVDVA 167 (314)
T ss_dssp HHHHHHH----TCSEE
T ss_pred HHhHHhh----CCCEE
Confidence 9999987 56665
No 21
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=99.92 E-value=7.9e-26 Score=228.34 Aligned_cols=176 Identities=11% Similarity=0.181 Sum_probs=140.0
Q ss_pred cCCHHHHHHHHHhhhhhhhhhhh-cccCccchhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhHh
Q psy14958 178 SINVIDFMNHIARLFRMGDMLKK-QSVGGSDQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNLL 255 (362)
Q Consensus 178 ~m~~~dfL~~lg~~f~v~~ML~R-d~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhlm 255 (362)
.++|..+++.+|..---..+|+| +.+.|...+..+.||..++++.. +++..+++ ++++.+|+||||||++||+||++
T Consensus 44 ~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~-~~l~~~l~~g~~~~vy~G~dPTag~LHLGh~v 122 (432)
T 2ip1_A 44 NIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDF-TKILDLYEQGKPFFLYTGRGPSSDSMHLGHMI 122 (432)
T ss_dssp --CHHHHHHHHTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESH-HHHHHHHHHTCCCEEEEEECCCSSCCBGGGHH
T ss_pred cCCHHHHHHHhCCCcCCHHHHHHHHHhhCCccHHHHhCCCcccCCCH-HHHHHHHhcCCCeEEEEeecCCCCCccHHHHH
Confidence 47888999988875554688888 46778788999999997776322 23444454 46899999999998899999999
Q ss_pred HHHHHHHHHH-cCCceEEeecchhHHhh----------------------c--CCCceEEEechhhhcCCCHHHHHHHHH
Q psy14958 256 ILINLIHWQR-AGHQVIALMICLSQILW----------------------R--TCNEEAVVNNMSWYNSINVIDFMNHIA 310 (362)
Q Consensus 256 sil~lr~fq~-~G~~~i~lIg~i~~~l~----------------------~--~~~~~~Iv~NsdW~~~~~~~dfL~~vg 310 (362)
++++++|||+ +||+++++|||+|+++. - ++++++|++||+|.. ..+.+++.
T Consensus 123 ~~~~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~-~~~~~~~~--- 198 (432)
T 2ip1_A 123 PFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMG-GAFYETVV--- 198 (432)
T ss_dssp HHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCS-HHHHHHHH---
T ss_pred HHHHHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCchhhh-hhHHHHHH---
Confidence 9999999999 99999999999764432 0 256899999999976 33455554
Q ss_pred hhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHH-----hh--hcCceec
Q psy14958 311 RLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHL-----YK--EHNCRFQ 361 (362)
Q Consensus 311 k~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L-----~~--~~~~~~Q 361 (362)
+|++|+.++++++|+...++++++||+||+||||||++| +. +|+|++|
T Consensus 199 ---~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lv 253 (432)
T 2ip1_A 199 ---RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLI 253 (432)
T ss_dssp ---HHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEE
T ss_pred ---HHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEE
Confidence 589999999999998655789999999999999999998 43 3788886
No 22
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=99.92 E-value=2e-25 Score=221.64 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=121.1
Q ss_pred chhHHHhhcccchhccccceeeeeccC-CCCceeeccCCCCCCcchhhHh-HHHHHHHHHHcCCceEEeecchhHHhhc-
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLVR-TPQTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQVIALMICLSQILWR- 283 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~s-ksl~~YiG~dpTa~~lHlGhlm-sil~lr~fq~~G~~~i~lIg~i~~~l~~- 283 (362)
+|...|.||.+++. ..+++..+|++ +++.+|+|||||| ++|+||.+ ..++|++||++||+++++|||+|+++.+
T Consensus 29 e~~~li~r~~~e~~--~~~~L~~~L~~~~~~~iy~G~~PTg-~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~ 105 (373)
T 3vgj_A 29 KILNDILSISSECI--QPDELRVKLLLKRKLICYDGFEPSG-RMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNK 105 (373)
T ss_dssp HHHHHHHHHCSEEE--CHHHHHHHHHHCSSCEEEEEECCCS-SCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTG
T ss_pred HHHHHHHcCcceec--CHHHHHHHHhcCCCceEEeCCCCCC-CceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCC
Confidence 47788999987763 56678777764 5889999999999 89999965 4567999999999999999998855420
Q ss_pred ------------------------CCCceEEEechhhhcCCC--HHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcch
Q psy14958 284 ------------------------TCNEEAVVNNMSWYNSIN--VIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYT 337 (362)
Q Consensus 284 ------------------------~~~~~~Iv~NsdW~~~~~--~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~ 337 (362)
++++++|++||+|...++ ++.++.++++++|+++|+++++++.|.++ ++++++
T Consensus 106 ~~~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~-~~~~~g 184 (373)
T 3vgj_A 106 MSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEG-EENYCS 184 (373)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTT-SCCBTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhcc-CCCChH
Confidence 367899999999995554 67788889999999999999999999875 689999
Q ss_pred hhhhhhHhHHhHHHHh
Q psy14958 338 EFSYQIFQSYDWAHLY 353 (362)
Q Consensus 338 Ef~YpllQayDf~~L~ 353 (362)
||+||+|||||++++.
T Consensus 185 ~f~YPlLQaaDil~l~ 200 (373)
T 3vgj_A 185 QILYPCMQCADIFFLN 200 (373)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccC
Confidence 9999999999999974
No 23
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=99.91 E-value=5.3e-25 Score=224.71 Aligned_cols=170 Identities=13% Similarity=0.221 Sum_probs=135.5
Q ss_pred ccCCHHHHHHHHHhhhhhhhhhhh-cccCccchhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhH
Q psy14958 177 NSINVIDFMNHIARLFRMGDMLKK-QSVGGSDQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNL 254 (362)
Q Consensus 177 ~~m~~~dfL~~lg~~f~v~~ML~R-d~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhl 254 (362)
..++|..+++.+|..---..+|+| +.+.|...+..+.||.-+.++.. +.+..+++ .+++.+|+||||||++||+||+
T Consensus 96 ~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~-~~l~~~l~~~~~~~vy~G~dPTag~LHLGh~ 174 (477)
T 1r6t_A 96 KGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDM-NQVLDAYENKKPFYLYTGRGPSSEAMHVGHL 174 (477)
T ss_dssp TCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESH-HHHHHHHHTTCCEEEEEEECCCTTCCBGGGH
T ss_pred cccCHHHHHHHhCCCCCCHHHHHHHHHHhCcccHHHHhCCCccccCCH-HHHHHHHhcCCCcEEEEcccCCCCCccHHHH
Confidence 348899999988876555688888 46788888999999996554221 12333344 4689999999999889999999
Q ss_pred hHHHHHHHHHH-cCCceEEeecchhHHhhc-----------------------CCCceEEEechhhhcCCCHHHHHHHHH
Q psy14958 255 LILINLIHWQR-AGHQVIALMICLSQILWR-----------------------TCNEEAVVNNMSWYNSINVIDFMNHIA 310 (362)
Q Consensus 255 msil~lr~fq~-~G~~~i~lIg~i~~~l~~-----------------------~~~~~~Iv~NsdW~~~~~~~dfL~~vg 310 (362)
+++++++|||+ +||+++++|||+|+++.+ ++++++|++||+|..++. +|++++
T Consensus 175 v~~~~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~~~l~--~~~~~~- 251 (477)
T 1r6t_A 175 IPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSS--GFYKNV- 251 (477)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGGGCT--THHHHH-
T ss_pred HHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEechhhhcccH--HHHHHH-
Confidence 99999999999 999999999998754420 367899999999997553 566654
Q ss_pred hhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHH
Q psy14958 311 RLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHL 352 (362)
Q Consensus 311 k~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L 352 (362)
++|++|+..+++++|+..+++++++||+||+||||||++|
T Consensus 252 --~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l 291 (477)
T 1r6t_A 252 --VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSN 291 (477)
T ss_dssp --HHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGG
T ss_pred --HHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHh
Confidence 4788888888888887555789999999999999999997
No 24
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=99.90 E-value=5.7e-25 Score=219.82 Aligned_cols=175 Identities=12% Similarity=0.200 Sum_probs=134.2
Q ss_pred cCCHHHHHHHHHhhhhhhhhhhh-cccCccchhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhHh
Q psy14958 178 SINVIDFMNHIARLFRMGDMLKK-QSVGGSDQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNLL 255 (362)
Q Consensus 178 ~m~~~dfL~~lg~~f~v~~ML~R-d~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhlm 255 (362)
.++|..+++.+|..---..+|+| +.+.|.+.+..+.||.-+.++.. +.+..+++ .+++.+|+||||||+++|+||++
T Consensus 16 ~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~-~~l~~~l~~g~~~~vy~G~~PTa~~lHlGh~v 94 (393)
T 3hv0_A 16 GIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDF-EKILDVYEKGELFYLYTGRGPSSESLHVGHLV 94 (393)
T ss_dssp ----CCHHHHTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESH-HHHHHHHHTTCCCEEEEEECCSSSSCBSTTHH
T ss_pred cccHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccCCH-HHHHHHHhcCCCeEEEeCCCCCCCCccHHHHH
Confidence 46677778877766555667777 46889999999999996665322 22333343 45899999999999999999999
Q ss_pred HHHHHHHHHHc-CCceEEeecchhHHhh----------------------c--CCCceEEEechhhhcCCCHHHHHHHHH
Q psy14958 256 ILINLIHWQRA-GHQVIALMICLSQILW----------------------R--TCNEEAVVNNMSWYNSINVIDFMNHIA 310 (362)
Q Consensus 256 sil~lr~fq~~-G~~~i~lIg~i~~~l~----------------------~--~~~~~~Iv~NsdW~~~~~~~dfL~~vg 310 (362)
++++++|||++ |+..++.|||++++++ - ++++++|++|++|..++ +.++++ ++
T Consensus 95 ~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~~~-~~~~~~-l~ 172 (393)
T 3hv0_A 95 PFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIAEL-YPDILR-IE 172 (393)
T ss_dssp HHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHHHH-HHHHHH-HH
T ss_pred HHHHHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHHHH-HHHHHH-HH
Confidence 99999999999 5556778899764321 0 36789999999999877 889998 99
Q ss_pred hhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHH------HhhhcCc-eec
Q psy14958 311 RLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAH------LYKEHNC-RFQ 361 (362)
Q Consensus 311 k~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~------L~~~~~~-~~Q 361 (362)
+++|+++|+++..+ +++++++||+||+|||||+++ ++.+++| ++|
T Consensus 173 r~~t~~~~~~~~~~------~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lv 224 (393)
T 3hv0_A 173 KKISCSQIKSIFGF------KDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLV 224 (393)
T ss_dssp HHSBHHHHHHHHCC------CTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEE
T ss_pred ccCCHHHHHHhhCC------CCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceec
Confidence 99999999986433 367999999999999999986 4556776 454
No 25
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=99.90 E-value=1.4e-24 Score=220.20 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHhhhhhhhhhhhc-ccCccchhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhHhH
Q psy14958 179 INVIDFMNHIARLFRMGDMLKKQ-SVGGSDQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 179 m~~~dfL~~lg~~f~v~~ML~Rd-~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhlms 256 (362)
.+|..+++.+|..---..+|+|= .+.|.+.+..+.||..+.++.. +.+...++ .+++.+|+||||||+++|+||+++
T Consensus 34 ~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl-~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v~ 112 (451)
T 3foc_A 34 VAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDF-EEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLP 112 (451)
T ss_dssp HHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESH-HHHHHHHHTTCCEEEEEEECCCSSCCBHHHHHH
T ss_pred CcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccH-HHHHHHHhcCCCeEEEecCCCCCCCccHHHHHH
Confidence 34555555555443334455663 4678888999999997765322 22333344 468999999999998999999999
Q ss_pred HHHHHHHHHc-CCceEEeecchhHHhh------------------------cCCCceEEEechhhhcCCCHHHHHHHHHh
Q psy14958 257 LINLIHWQRA-GHQVIALMICLSQILW------------------------RTCNEEAVVNNMSWYNSINVIDFMNHIAR 311 (362)
Q Consensus 257 il~lr~fq~~-G~~~i~lIg~i~~~l~------------------------~~~~~~~Iv~NsdW~~~~~~~dfL~~vgk 311 (362)
+++++|||++ |+..++.|||.+++++ -++++++|++||+|.....+++++.++++
T Consensus 113 ~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~r 192 (451)
T 3foc_A 113 FIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDR 192 (451)
T ss_dssp HHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHHh
Confidence 9999999999 5556667898643321 03568999999999987789999999999
Q ss_pred hccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhh
Q psy14958 312 LFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYK 354 (362)
Q Consensus 312 ~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~ 354 (362)
++|+++|++++.+ .++++++||+||+||||||+++.-
T Consensus 193 ~~Tv~~m~~~~~f------~~~is~gef~YPlLQAaDil~~~~ 229 (451)
T 3foc_A 193 MLPISQLRASFGF------SNDANVGYAAFPPKQMLPVYSTYF 229 (451)
T ss_dssp TCCHHHHHHHHCC------CSSSCHHHHTCHHHHHGGGSGGGG
T ss_pred hCCHHHHHhhccc------CCCCchHHHhhHHHHHHHHHHhhc
Confidence 9999999998754 256999999999999999998843
No 26
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=99.89 E-value=4.7e-24 Score=211.81 Aligned_cols=192 Identities=13% Similarity=-0.006 Sum_probs=147.2
Q ss_pred chhhhHHHHHHHHhc-CchhhH-----HHHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhh
Q psy14958 13 LFVAMNCREILSEIF-GLKYFL-----SPLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFL 81 (362)
Q Consensus 13 ~~~~~~~~~~~~~~~-g~~~~~-----~~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
.+..|++.+.++.+. |+.|.+ .++|+ +++|++++.|||| +||.++.++ |++.
T Consensus 21 ~~~~~~~~e~~~li~r~~~e~~~~~~L~~~L~---~~~~~~iy~G~~PTg~lHlG~gvl~~~--------------~~~~ 83 (373)
T 3vgj_A 21 ESKIEDVDKILNDILSISSECIQPDELRVKLL---LKRKLICYDGFEPSGRMHIAQGLLKSI--------------IVNK 83 (373)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEECHHHHHHHHH---HCSSCEEEEEECCCSSCBHHHHHHHHH--------------HHHH
T ss_pred CCCCCCHHHHHHHHHcCcceecCHHHHHHHHh---cCCCceEEeCCCCCCCceehhhHHHHH--------------HHHH
Confidence 344578899999887 765444 45553 4789999999999 788764432 6889
Q ss_pred hhhcCCCccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q psy14958 82 YSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRK 161 (362)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~ 161 (362)
||+.| |.+ +++|||+||+||||||++.+ +|++|+..+. +....+..
T Consensus 84 lQ~~G--~~~--------------~~lIaD~ha~i~d~~~~~~~-------~i~~~~~~~~-~~~~a~G~---------- 129 (373)
T 3vgj_A 84 LTSNG--CTF--------------IFWIADWFAHLNNKMSGDLK-------KIKKVGSYFI-EVWKSCGM---------- 129 (373)
T ss_dssp HHTTT--CEE--------------EEEECHHHHHHTTGGGGCHH-------HHHHHHHHHH-HHHHHTTC----------
T ss_pred HHHCC--CcE--------------EEEEecceeEecCCCCCCHH-------HHHHHHHHHH-HHHHHcCC----------
Confidence 99998 999 79999999999999999854 6888886654 44444421
Q ss_pred CCCCCcEEEeChhhhccCCH--HHHHHHHHhhhhhhhhhhhc---------------------------------ccCcc
Q psy14958 162 DSLKPPIVVNNMSWYNSINV--IDFMNHIARLFRMGDMLKKQ---------------------------------SVGGS 206 (362)
Q Consensus 162 ~~~~~~~i~nN~~Wl~~m~~--~dfL~~lg~~f~v~~ML~Rd---------------------------------~iGGs 206 (362)
++++++|++||+|.+.++- ..|+.+++++++|++|++++ +.||+
T Consensus 130 -dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~ 208 (373)
T 3vgj_A 130 -NMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIFFLNVDICQLGI 208 (373)
T ss_dssp -CSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSCCBTHHHHHHHHHHHHHHHTTCSEECCBG
T ss_pred -ChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCCCChHHHHHHHHHHhcccccCCcEEEcch
Confidence 2789999999999966663 34566799999999999974 25999
Q ss_pred chhHHHhhcccchhccccc------e---eeeec-----cCCCC-ceeeccCCCCCCcchhhHhHH
Q psy14958 207 DQMGNIKAGHDLISKLYGK------T---VFDLL-----VRTPQ-TVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gq------e---Lp~LL-----~sksl-~~YiG~dpTa~~lHlGhlmsi 257 (362)
||++|+..||+++++.... + ++.|. .|||. ++||+++++|+++ .+++++.
T Consensus 209 DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D~p~~i-~~KI~kA 273 (373)
T 3vgj_A 209 DQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDV-NRKIKKA 273 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTCCHHHH-HHHHHHS
T ss_pred hhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecCCCHHHH-HHHHHhC
Confidence 9999999999999864322 1 23331 26777 5899999999888 8888775
No 27
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=99.88 E-value=1.3e-23 Score=206.69 Aligned_cols=186 Identities=13% Similarity=0.028 Sum_probs=148.2
Q ss_pred hHHHHHHHHhc-Cchhh-----HHHHHhcccCCCcceEEeeeCC-----Ccc-hhhhhhhhhhHhhhhcccccchhhhhh
Q psy14958 17 MNCREILSEIF-GLKYF-----LSPLLSRGSASTQGISRYKLSP-----CGH-LLAENIKKEWVRSCVLRREEPAFLYSQ 84 (362)
Q Consensus 17 ~~~~~~~~~~~-g~~~~-----~~~~~~~~~~~~~~~~~~g~dp-----~gh-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (362)
|++.+.++.+. |+.|. |.++|++ ++|.+++.|+|| +|| +++++ +++.||+
T Consensus 9 ~~~~~~~~l~~r~~~e~~~~~~L~~~L~~---~~~~~vy~G~~PTg~lHlGhyl~~l~---------------~~~~lQ~ 70 (348)
T 2j5b_A 9 TNNEHRLTQLLSIAEECETLDRLKQLVDS---GRIFTAYNGFEPSGRIHIAQALITVM---------------NTNNMIE 70 (348)
T ss_dssp HHHHHHHHHHHTTCSEESCHHHHHHHHHH---TCCEEEEEEECCCSSCBHHHHHHHHH---------------HHHHHHH
T ss_pred CCHHHHHHHHHcCcccccCHHHHHHHHhc---CCCCEEEeccCCCCCCchhHHHHHHH---------------HHHHHHH
Confidence 56778888876 76554 4455543 679999999999 899 88998 9999999
Q ss_pred cCCCccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCC
Q psy14958 85 QGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSL 164 (362)
Q Consensus 85 ~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~ 164 (362)
.| |.+ +++|||+||+|||||| ++.|+|++|++.+.+++..+- -++
T Consensus 71 ~G--~~~--------------~~~i~D~~a~~~~~~~-------~~~e~i~~~~~~~~~~~la~G------------ldp 115 (348)
T 2j5b_A 71 CG--GQM--------------IIYIADWFAKMNLKMN-------GDINKIRELGRYFIEVFKACG------------INL 115 (348)
T ss_dssp TT--EEE--------------EEEECHHHHHHTTGGG-------GCHHHHHHHHHHHHHHHHHTT------------CCG
T ss_pred cC--CcE--------------EEEeccchhhhCCCCC-------CCHHHHHHHHHHHHHHHHHhc------------CCc
Confidence 98 999 8999999999999997 788999999999999864331 126
Q ss_pred CCcEEEeChhhhccC-CHHHHHHHHHhhhhhhhhhhhc------------------------------------ccCccc
Q psy14958 165 KPPIVVNNMSWYNSI-NVIDFMNHIARLFRMGDMLKKQ------------------------------------SVGGSD 207 (362)
Q Consensus 165 ~~~~i~nN~~Wl~~m-~~~dfL~~lg~~f~v~~ML~Rd------------------------------------~iGGsD 207 (362)
++++|++||+|+... .+.+++.++++++++++|++++ ..||+|
T Consensus 116 ~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~D 195 (348)
T 2j5b_A 116 DGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELVPEGIDICQLGID 195 (348)
T ss_dssp GGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----------------CCHHHHHHHHHHHSSTTCCSEECCBGG
T ss_pred cceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEeccC
Confidence 789999999998643 6778888899999999999754 159999
Q ss_pred hhHHHhhcccchhccccce---------eeeec-----cCCCC-ceeeccCCCCCCcchhhHhHH
Q psy14958 208 QMGNIKAGHDLISKLYGKT---------VFDLL-----VRTPQ-TVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 208 Q~~NI~rGrdLi~r~~gqe---------Lp~LL-----~sksl-~~YiG~dpTa~~lHlGhlmsi 257 (362)
|++|+..+|+++++. +.. +|.|- .|||. +++|.++++|+++ ..+++..
T Consensus 196 Q~~~i~l~Rdia~r~-~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~p~~i-~kKI~ka 258 (348)
T 2j5b_A 196 QRKVNMLAIEYANDR-GLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEV-SEKISRA 258 (348)
T ss_dssp GHHHHHHHHHHHHHT-TCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCCHHHH-HHHHHHS
T ss_pred hHHHHHHHHHHHHHh-CCCCceeecCccccCCCCcccccccCCCCCeEeecCCHHHH-HHHHhcc
Confidence 999999999998864 321 23331 26777 5899999998877 6676664
No 28
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=99.88 E-value=3.7e-23 Score=206.83 Aligned_cols=167 Identities=12% Similarity=0.115 Sum_probs=129.1
Q ss_pred ccCCHHHHHHHHHhhhhhhhhhhhc-ccCccchhHHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHh
Q psy14958 177 NSINVIDFMNHIARLFRMGDMLKKQ-SVGGSDQMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLL 255 (362)
Q Consensus 177 ~~m~~~dfL~~lg~~f~v~~ML~Rd-~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlm 255 (362)
..+++..+++.+|..---..+|+|= .+.|.+.+..+.||..+.++....-+..+.+.+++.+|+|+|||++++|+||++
T Consensus 19 ~~~dy~~l~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~~PTg~~lHLGh~v 98 (395)
T 3i05_A 19 GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLI 98 (395)
T ss_dssp ---CHHHHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGSH
T ss_pred CcccHHHHHHHhCCCcCCHHHHHHHHHhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEEeecCCCccchHHHHH
Confidence 3577888999888765556677884 588999999999999977643222122122357999999999999999999999
Q ss_pred HHHHHHHHHHc-CCceEEeecchhHHhh-----------------------cCCCceEEEechhhhcCCCHHHHHHHHHh
Q psy14958 256 ILINLIHWQRA-GHQVIALMICLSQILW-----------------------RTCNEEAVVNNMSWYNSINVIDFMNHIAR 311 (362)
Q Consensus 256 sil~lr~fq~~-G~~~i~lIg~i~~~l~-----------------------~~~~~~~Iv~NsdW~~~~~~~dfL~~vgk 311 (362)
++++++|||++ |+..+++|||+++++. -++++++|++|++|.. ..+.++++ +++
T Consensus 99 ~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~-~~~~~v~~-l~r 176 (395)
T 3i05_A 99 PFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG-CMYRTVAK-IER 176 (395)
T ss_dssp HHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT-TSHHHHHH-HHH
T ss_pred HHHHHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH-HHHHHHHH-HHh
Confidence 99999999998 5555566899753321 0367899999999987 55678887 999
Q ss_pred hccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHH
Q psy14958 312 LFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAH 351 (362)
Q Consensus 312 ~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~ 351 (362)
++|+++|+++..+ .++++++||+||+||||||++
T Consensus 177 ~~t~~~~~~~~~~------~~~~s~g~f~YPlLQaaD~~~ 210 (395)
T 3i05_A 177 AFTASQVRGCFGF------AMEDNCGRWMFPAIQAAPSFS 210 (395)
T ss_dssp HSBHHHHHHHHCC------CTTSBHHHHHHHHHHHGGGSG
T ss_pred hCCHHHHHHhhCC------CCCCchHHHHHHHHHHHhhhc
Confidence 9999999986533 257999999999999999885
No 29
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=99.87 E-value=1.9e-23 Score=206.62 Aligned_cols=189 Identities=12% Similarity=0.084 Sum_probs=148.0
Q ss_pred hHHHHHHHHhc-CchhhHH--HHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCC
Q psy14958 17 MNCREILSEIF-GLKYFLS--PLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDC 88 (362)
Q Consensus 17 ~~~~~~~~~~~-g~~~~~~--~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 88 (362)
|++.+.++.+. |+.|++. ++.+...+|+|.+++.|||| +||++++. +++.||+.|
T Consensus 4 ~~~~~~~~l~~r~~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg~lHlG~l~~l~---------------~~~~lQ~~G-- 66 (364)
T 2cya_A 4 VDVEERFNRIARNTVEIVTEEELKGLLASGARIKGYIGYEPSGVAHIGWLVWMY---------------KVKDLVEAG-- 66 (364)
T ss_dssp CHHHHHHHHHHTTCSEEETHHHHHHHHHHCSCCEEEEEECCCSSCBTHHHHHHH---------------HHHHHHHTT--
T ss_pred CCHHHHHHHHHcCchhcCCHHHHHHHHhcCCCCEEEeccCCCCCccHhHHHHHH---------------HHHHHHHCC--
Confidence 46777777776 7765554 22222244789999999999 89999999 999999998
Q ss_pred ccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcE
Q psy14958 89 ENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168 (362)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~ 168 (362)
|.+ +++|||+||++|||||+ +.|+|++|++.+...+..+ . -++++++
T Consensus 67 ~~~--------------~~~iaD~~a~~~~ps~~-------~~e~i~~~~~~~~~~~la~-G-----------~dp~k~~ 113 (364)
T 2cya_A 67 VDF--------------SVLEATWHAYINDKLGG-------DMDLIRAAARIVRRVMEAA-G-----------VPVERVR 113 (364)
T ss_dssp CEE--------------EEEECHHHHHHTTGGGG-------CHHHHHHHHHHHHHHHHHT-T-----------CCGGGCE
T ss_pred CCE--------------EEEEeCcchhhCCCCCC-------CHHHHHHHHHHHHHHHHHh-C-----------CCccceE
Confidence 998 89999999999999998 6899999998776544332 1 1267899
Q ss_pred EEeChhhhccCCHHHHHHHHHhhhhhhhhhhhc----------------------------------ccCccchhHHHhh
Q psy14958 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQ----------------------------------SVGGSDQMGNIKA 214 (362)
Q Consensus 169 i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~Rd----------------------------------~iGGsDQ~~NI~r 214 (362)
|++||+|+....+.+++.++++++|+++|++++ ..||+||+.|+..
T Consensus 114 i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l 193 (364)
T 2cya_A 114 FVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHML 193 (364)
T ss_dssp EEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred EEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHH
Confidence 999999998877788888899999999999874 1499999999999
Q ss_pred cccchhccccc-----e---eeeec--------------------cCCC-CceeeccCCCCCCcchhhHhH
Q psy14958 215 GHDLISKLYGK-----T---VFDLL--------------------VRTP-QTVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 215 GrdLi~r~~gq-----e---Lp~LL--------------------~sks-l~~YiG~dpTa~~lHlGhlms 256 (362)
+|+++++.... . ++.+- .||| .+++|.++++|+++ ..+++.
T Consensus 194 ~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~p~~i-~~Ki~~ 263 (364)
T 2cya_A 194 ARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDI-RRKIRK 263 (364)
T ss_dssp HHHHHTTTTCCCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCCHHHH-HHHHHT
T ss_pred HHHHHHHcCCCCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCCHHHH-HHHHHh
Confidence 99999864221 1 22222 2467 68999999998776 666643
No 30
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=99.87 E-value=3.8e-23 Score=205.27 Aligned_cols=192 Identities=12% Similarity=0.059 Sum_probs=149.3
Q ss_pred HHHHHHHHhc-C-chhhHH--HHHhcccCCCcceEEeeeCC-----Ccc-hhhhhhhhhhHhhhhcccccchhhhhhcCC
Q psy14958 18 NCREILSEIF-G-LKYFLS--PLLSRGSASTQGISRYKLSP-----CGH-LLAENIKKEWVRSCVLRREEPAFLYSQQGD 87 (362)
Q Consensus 18 ~~~~~~~~~~-g-~~~~~~--~~~~~~~~~~~~~~~~g~dp-----~gh-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 87 (362)
++.+.++.+. | +.+++. ++.+...+++|.+++.|||| +|| ++++. +++.||+.|
T Consensus 2 ~~~~~~~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg~lHlG~yl~~l~---------------~~~~lQ~~G- 65 (375)
T 2cyc_A 2 DIEERINLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGA---------------KIADFQKAG- 65 (375)
T ss_dssp CHHHHHHHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCSCCBHHHHHHHHH---------------HHHHHHHTT-
T ss_pred CHHHHHHHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCCCcCchHHHHHHH---------------HHHHHHHCC-
Confidence 3555666665 7 554443 23333344789999999999 899 99999 999999998
Q ss_pred CccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHH-HHHHHHHHHHHhhhhhhhhcccCCCCCC
Q psy14958 88 CENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNT-KGIEKNIKTIFRNHEQYFWKDRKDSLKP 166 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na-~~i~~Qi~~il~n~~~~~~~~~~~~~~~ 166 (362)
|.+ +++|||+||+||||||++ .|+|++|+ +.+..|+.+.+-- ..-++++
T Consensus 66 -~~~--------------~~~iaD~ha~~~~~~g~~-------~e~i~~~~~~~~~~~~~~~~la--------~G~dp~k 115 (375)
T 2cyc_A 66 -IKT--------------RVFLADWHSWINDKLGGD-------LEVIQEVALKYFKVGMEKSIEV--------MGGDPKK 115 (375)
T ss_dssp -CBC--------------EEEECHHHHHHTTGGGGC-------HHHHHHHHHHTHHHHHHHHHHH--------TTCCGGG
T ss_pred -CcE--------------EEEecCcEEEcCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHH--------hCCCccc
Confidence 998 899999999999999986 79999999 8899888885431 1113778
Q ss_pred cEEEeChhhhccCCHHHHHHHHHhhhhhhhhhhhcc---------------------------------cCccchhHHHh
Q psy14958 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQS---------------------------------VGGSDQMGNIK 213 (362)
Q Consensus 167 ~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~Rd~---------------------------------iGGsDQ~~NI~ 213 (362)
++|++||+|+..+.+.+++.++++++++++|+++++ .||+||+.|+.
T Consensus 116 ~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g~f~YP~LQaaDil~~~~~~vp~G~DQ~~~i~ 195 (375)
T 2cyc_A 116 VEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHV 195 (375)
T ss_dssp SEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTTCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred eEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCCCChHHHHHHHHHHHHHHHhCCCeecccchHHHHHH
Confidence 999999999999877888888999999999997751 49999999999
Q ss_pred hcccchhcccc----------c----e---eeeec---------------------cCCCC-ceeeccCCCCCCcchhhH
Q psy14958 214 AGHDLISKLYG----------K----T---VFDLL---------------------VRTPQ-TVYAGFDPTASSLHIGNL 254 (362)
Q Consensus 214 rGrdLi~r~~g----------q----e---Lp~LL---------------------~sksl-~~YiG~dpTa~~lHlGhl 254 (362)
.||+++++... + + ++.+- .|||. +++|.++++|+++ ..++
T Consensus 196 l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i-~~KI 274 (375)
T 2cyc_A 196 IAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEI-RQKL 274 (375)
T ss_dssp HHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHH-HHHH
T ss_pred HHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHH-HHHH
Confidence 99999987532 1 0 12221 14565 7899999998766 5565
Q ss_pred hH
Q psy14958 255 LI 256 (362)
Q Consensus 255 ms 256 (362)
+.
T Consensus 275 ~~ 276 (375)
T 2cyc_A 275 RK 276 (375)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 31
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=99.87 E-value=2.1e-22 Score=196.33 Aligned_cols=120 Identities=16% Similarity=0.242 Sum_probs=103.8
Q ss_pred CCCCceeeccCCCCCCcchhhHh-HHHHHHHHHHcCCceEEeecchhHHhh--------------------c--CCCceE
Q psy14958 233 RTPQTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQVIALMICLSQILW--------------------R--TCNEEA 289 (362)
Q Consensus 233 sksl~~YiG~dpTa~~lHlGhlm-sil~lr~fq~~G~~~i~lIg~i~~~l~--------------------~--~~~~~~ 289 (362)
|+.+.+|+||+||+ ++|+||++ ++..|++||+ ||+++++|||+|++.. - ++++++
T Consensus 1 ~~~~~vysG~~PTg-~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 1 SNAMRVLTGLQPSG-DLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp ---CCBEEEECCSS-CCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CCceEEEEccCCCc-cccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 35678999999999 79999999 5899999999 9999999999874321 1 367899
Q ss_pred EEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 290 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 290 Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
|++||+|.. +.+++..+++++++++|.+.++||.|++.++++++++|+||+|||+||++ |+|.+|
T Consensus 79 i~~qS~~~~---~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAaDil~----~~~~~v 143 (322)
T 3tzl_A 79 FWLQSDVKE---VMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAADILL----FDTRIV 143 (322)
T ss_dssp EEEGGGCTH---HHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHHHHHH----TTCSEE
T ss_pred EEECCcchh---HHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHHHHHH----hCCcEE
Confidence 999999975 67888889999999999999999999987678999999999999999998 577765
No 32
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.87 E-value=1.5e-22 Score=196.60 Aligned_cols=146 Identities=18% Similarity=0.337 Sum_probs=120.2
Q ss_pred chhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhhc--
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWR-- 283 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~~-- 283 (362)
+|+..+.||...+. +.+++..+|+ ++++.+|+|++||+ ++|+||+++++.|+++|++|++++++|||+|+++.+
T Consensus 5 ~~~~l~~rg~~e~~--~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~l~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~ 81 (323)
T 2cyb_A 5 EKLRLITRNAEEVV--TEEELRQLIETKEKPRAYVGYEPSG-EIHLGHMMTVQKLMDLQEAGFEIIVLLADIHAYLNEKG 81 (323)
T ss_dssp HHHHHHHTTCSEEE--THHHHHHHHHSCSCCEEEEEECCCS-CCBHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTTCC
T ss_pred HHHHHHHcCChhhc--CHHHHHHHHhCCCCCEEEECcCCCC-cchHHHHHHHHHHHHHHHCCCcEEEEECCceeEcCCCC
Confidence 48888999987764 5566777776 57899999999999 699999999999999999999999999997643320
Q ss_pred ---------------------CCCceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhh
Q psy14958 284 ---------------------TCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQ 342 (362)
Q Consensus 284 ---------------------~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~Yp 342 (362)
++++++|++||+|+.+..+.+++..+++++|+++|+++.++..|-. +. .++++|+||
T Consensus 82 ~~~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~-~~-~~~g~~~YP 159 (323)
T 2cyb_A 82 TFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRK-ED-PMVSQMIYP 159 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCS-SS-CBTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhcccc-CC-CCchhhhhH
Confidence 3668999999999988778888888999999999998754443332 23 499999999
Q ss_pred hHhHHhHHHHhhhcCceec
Q psy14958 343 IFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 343 llQayDf~~L~~~~~~~~Q 361 (362)
+|||+|++++ +|.+|
T Consensus 160 ~lqaaD~l~~----~~~~v 174 (323)
T 2cyb_A 160 LMQALDIAHL----GVDLA 174 (323)
T ss_dssp HHHHHHHHHT----TCSEE
T ss_pred HHHHHHHHhc----CCCEE
Confidence 9999999986 55554
No 33
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=99.87 E-value=1.3e-22 Score=214.98 Aligned_cols=142 Identities=13% Similarity=0.182 Sum_probs=115.4
Q ss_pred chhHHHhhcccchhccccceeeeecc-CCCCceeeccCCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecchhHHhh--
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLV-RTPQTVYAGFDPTASSLHIGNLLIL-INLIHWQRAGHQVIALMICLSQILW-- 282 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~-sksl~~YiG~dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~i~~~l~-- 282 (362)
+|...|.+|.+++. ..+++..+|+ .+++.+|+|||||| ++|+||.+.. ++|++||++||+++++|||+|+++.
T Consensus 13 ~~~~~~~~~~~e~~--~~~eL~~~L~~~~~~~vy~G~~PTg-~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~ 89 (690)
T 3p0j_A 13 ERYKLLRSVGEECI--QESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDK 89 (690)
T ss_dssp HHHHHHHHTCSEEE--CHHHHHHHHHHCTTEEEEEEECCCS-CCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCT
T ss_pred HHHHHHhhCceeec--CHHHHHHHHhcCCCceEEeeecCCC-cchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCC
Confidence 48888999998874 5677888776 46899999999999 8999997654 5799999999999999999874431
Q ss_pred -----------------------cCCCceEEEechhhhcCCC--HHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcch
Q psy14958 283 -----------------------RTCNEEAVVNNMSWYNSIN--VIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYT 337 (362)
Q Consensus 283 -----------------------~~~~~~~Iv~NsdW~~~~~--~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~ 337 (362)
-++++++|++||+|+.+++ ++.++.++++++|+++|+++++++.|.++ +++++
T Consensus 90 ~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~--~i~~g 167 (690)
T 3p0j_A 90 VGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEG--TLTAA 167 (690)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------C--CCCCS
T ss_pred CcchHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccC--CCchh
Confidence 0256899999999998874 68888889999999999999999999874 39999
Q ss_pred hhhhhhHhHHhHHHHh
Q psy14958 338 EFSYQIFQSYDWAHLY 353 (362)
Q Consensus 338 Ef~YpllQayDf~~L~ 353 (362)
+|+||+|||||++++.
T Consensus 168 ~f~YPlLQAaDil~~~ 183 (690)
T 3p0j_A 168 QVLYPLMQCCDIFFLK 183 (690)
T ss_dssp CSSHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHhhC
Confidence 9999999999999973
No 34
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.86 E-value=8.9e-22 Score=192.89 Aligned_cols=118 Identities=12% Similarity=0.142 Sum_probs=102.5
Q ss_pred CceeeccCCCCCCcchhhHhH-HHHHHHHHHcC-CceEEeecchhHHhhc------------------------CCCceE
Q psy14958 236 QTVYAGFDPTASSLHIGNLLI-LINLIHWQRAG-HQVIALMICLSQILWR------------------------TCNEEA 289 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlms-il~lr~fq~~G-~~~i~lIg~i~~~l~~------------------------~~~~~~ 289 (362)
..+|+|||||++ +|+||+++ +.+|++||++| |+++++|||+|++..+ ++++++
T Consensus 2 ~~vy~G~~PTg~-lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~ 80 (337)
T 2el7_A 2 KRVLSGIQPSGE-IHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVT 80 (337)
T ss_dssp CCEEEEECSCSC-CBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSE
T ss_pred CEEEEeeCCCCc-ccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheE
Confidence 369999999995 99999995 46999999999 9999999997743311 367899
Q ss_pred EEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 290 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 290 Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
|++||+|.. +.++...+++++|+++|.+.++|+.|++++++++++||+||+||||||++ |+|.+|
T Consensus 81 i~~qS~~~~---~~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaaDil~----~~~~lv 145 (337)
T 2el7_A 81 LFVQSHVPE---HTELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAADILI----YKADTV 145 (337)
T ss_dssp EEEGGGSTH---HHHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHHHHHH----TTCCEE
T ss_pred EEEcCcchh---hHHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHhhHHh----hCCcEE
Confidence 999999985 56666678999999999999999999987678999999999999999998 788876
No 35
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=99.85 E-value=3.1e-22 Score=200.80 Aligned_cols=174 Identities=12% Similarity=0.168 Sum_probs=136.3
Q ss_pred cCCHHHHHHHHHhhhhhhhhhhh-cccCccchhHHHhhcccchhccccceeeeec-cCCCCceeeccCCCCCCcchhhHh
Q psy14958 178 SINVIDFMNHIARLFRMGDMLKK-QSVGGSDQMGNIKAGHDLISKLYGKTVFDLL-VRTPQTVYAGFDPTASSLHIGNLL 255 (362)
Q Consensus 178 ~m~~~dfL~~lg~~f~v~~ML~R-d~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL-~sksl~~YiG~dpTa~~lHlGhlm 255 (362)
.+++..+++.+|..---..+|+| +.+.|.+.+..+.||.-+.++... .+-..+ +++++.+|+|++||++++|+||++
T Consensus 43 ~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~-~ll~~~~~~~p~~vy~G~~PTg~~lHLGh~v 121 (406)
T 3tze_A 43 AIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFN-LLLDEIANNRPFYLYTGRGPSSKTMHIGHTI 121 (406)
T ss_dssp CCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHH-HHHHHHHTTCCEEEEEEECCCSSCCBGGGHH
T ss_pred cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHH-HHHHHHhcCCCeEEEEeeCCCCCcccHHHHH
Confidence 57899999988876555667787 468899999999999966553221 122223 357999999999999999999999
Q ss_pred HHHHHHHHHHc-CCceEEeecchhHHhh-----------------------cCCCceEEEechhhhcCCCHHHHHHHHHh
Q psy14958 256 ILINLIHWQRA-GHQVIALMICLSQILW-----------------------RTCNEEAVVNNMSWYNSINVIDFMNHIAR 311 (362)
Q Consensus 256 sil~lr~fq~~-G~~~i~lIg~i~~~l~-----------------------~~~~~~~Iv~NsdW~~~~~~~dfL~~vgk 311 (362)
++++++|||++ |+..+++|||++++++ -++++++|++|++|.. ..+.++.+ +++
T Consensus 122 ~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~~-~~~~~~~~-L~r 199 (406)
T 3tze_A 122 PFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEASH-HFEENILK-ISK 199 (406)
T ss_dssp HHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG-GGHHHHHH-HHH
T ss_pred HHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhHH-HHHHHHHH-HHh
Confidence 99999999999 8888888999775431 0256899999999997 33556665 999
Q ss_pred hccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHH-----HhhhcCceec
Q psy14958 312 LFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAH-----LYKEHNCRFQ 361 (362)
Q Consensus 312 ~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~-----L~~~~~~~~Q 361 (362)
++|+++|+++..+ ++++++++|+||+||||||++ +.. |++++|
T Consensus 200 ~~t~~~~~~~~g~------~~~~s~g~f~YPlLQaaD~~~~~~p~il~-~~a~lv 247 (406)
T 3tze_A 200 TINLNEAIKVFGF------DMSSNIGQVGFPAKEIAPCFSSSFRFIGK-GAMCLV 247 (406)
T ss_dssp TCBHHHHHHHHCC------CTTSBHHHHHHHHHHHGGGSGGGSTTSCT-TCEEEE
T ss_pred hCCHHHHHHhhCC------CCCCcchhhhhHHHhhhhhhccchHHhcc-CCCeEE
Confidence 9999999886432 257899999999999999984 544 677765
No 36
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=99.85 E-value=6.4e-22 Score=197.75 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=135.0
Q ss_pred cCCHHHHHHHHHhhhhhhhhhhh-cccCccchhHHHhhcccchhccccceeeeec-cCCCCceeeccCCCCCCcchhhHh
Q psy14958 178 SINVIDFMNHIARLFRMGDMLKK-QSVGGSDQMGNIKAGHDLISKLYGKTVFDLL-VRTPQTVYAGFDPTASSLHIGNLL 255 (362)
Q Consensus 178 ~m~~~dfL~~lg~~f~v~~ML~R-d~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL-~sksl~~YiG~dpTa~~lHlGhlm 255 (362)
..++..+++.+|..---..+|+| +.+.|.+.+..+.||.-+.++.. +.+...+ +++++.+|+|++||+ ++|+||++
T Consensus 15 ~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~Rg~i~~~~d~-~~l~~~~~~~~p~~i~sG~~PTG-~lHLGh~v 92 (392)
T 3jxe_A 15 VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDY-DLILKDYEEGRGFFLYTGRGPSG-PMHIGHII 92 (392)
T ss_dssp CCCHHHHHHHTTCEECCHHHHHHHHHHTTSCCCHHHHTTSEEEEESH-HHHHHHHHTTCCCEEEEEECCSS-CCBHHHHH
T ss_pred cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCcCcccccCH-HHHHHHHhcCCCeEEEeccCCCC-chhHHHHH
Confidence 48899999988876655777888 46899999999999996665322 1222223 467999999999997 89999999
Q ss_pred HHHHHHHHHH-cCCceEEeecchhHHhhc------------------------CCCceEEEechhhhcCCCHHHHHHHHH
Q psy14958 256 ILINLIHWQR-AGHQVIALMICLSQILWR------------------------TCNEEAVVNNMSWYNSINVIDFMNHIA 310 (362)
Q Consensus 256 sil~lr~fq~-~G~~~i~lIg~i~~~l~~------------------------~~~~~~Iv~NsdW~~~~~~~dfL~~vg 310 (362)
++++.+|||+ +|++++++|||+|+++.+ ++++++|++||+|.. +.+++..++
T Consensus 93 ~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~---~~~~~~~l~ 169 (392)
T 3jxe_A 93 PFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTK---IYEMAIPIA 169 (392)
T ss_dssp HHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTSTH---HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhHH---HHHHHHHHH
Confidence 9999999999 899999999998755320 367899999999987 888888899
Q ss_pred hhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHh
Q psy14958 311 RLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLY 353 (362)
Q Consensus 311 k~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~ 353 (362)
+++|+++|+++..+ .+++++++|+||+|||||+++++
T Consensus 170 ~~~t~~~~~~~~~~------~~~~~~g~f~YP~LQaaDil~~~ 206 (392)
T 3jxe_A 170 KKINFSMAKAVFGF------TEQSKIGMIFFPAIQIAPTFFER 206 (392)
T ss_dssp HHSBHHHHHHHHCC------CTTSBHHHHHHHHHHHGGGGSSS
T ss_pred hhCCHHHHhhhhcc------CCCCchHHHHHHHHHHhhHHhhc
Confidence 99999999875432 25689999999999999999973
No 37
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.84 E-value=1.4e-21 Score=193.69 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=116.1
Q ss_pred chhHHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHh-----
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQIL----- 281 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l----- 281 (362)
+|...+.||.+.+. ..+++..+|.+++..+|+|||||+ ++|+||+++++++++|+..|++++++|||+|++.
T Consensus 9 ~~~~l~~Rg~~e~~--~~~~L~~~L~~~~~~vy~G~~PTG-~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~ 85 (372)
T 1n3l_A 9 EKLHLITRNLQEVL--GEEKLKEILKERELKIYWGTATTG-KPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKA 85 (372)
T ss_dssp HHHHHHHTTCSEEE--CHHHHHHHHTTSCCEEEEEECCSS-CCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTS
T ss_pred HHHHHHHcCCeeec--CHHHHHHHHhcCCCEEEeCcCCCC-cccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCC
Confidence 47888999976552 345677777667889999999999 8999999999999999999999999999965221
Q ss_pred ---------------------h-c-CCCceEEEechhh-hcCCCHHHHHHHHHhhccHHHHHchhH-HHhhhhcCCCCcc
Q psy14958 282 ---------------------W-R-TCNEEAVVNNMSW-YNSINVIDFMNHIARLFRMGDMLKKQS-VVTRLESEHGMNY 336 (362)
Q Consensus 282 ---------------------~-~-~~~~~~Iv~NsdW-~~~~~~~dfL~~vgk~~tl~~mL~rd~-~~~Rl~~~~gis~ 336 (362)
+ + +++++.|++||+| +.+..+.++++ +++++|+++|.+..+ +. |. .+++++
T Consensus 86 ~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~-l~~~~t~~~~~~~~~~v~-~~--~~~~~~ 161 (372)
T 1n3l_A 86 PWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYR-LSSVVTQHDSKKAGAEVV-KQ--VEHPLL 161 (372)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHH-HHTTSCHHHHHHHTTTTS-CC--CSSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHH-HHhhCcHHHHHhchhhhh-cc--cCCCcc
Confidence 1 1 3678999999999 45455678898 999999999988643 22 22 257899
Q ss_pred hhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 337 TEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 337 ~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
+||+||+|||+||++ |+|.+|
T Consensus 162 g~~~YP~lQaaDil~----~~a~~v 182 (372)
T 1n3l_A 162 SGLLYPGLQALDEEY----LKVDAQ 182 (372)
T ss_dssp HHHHHHHHHHHHHHH----TTCSEE
T ss_pred eeeecchHhhccHHH----hcCCEE
Confidence 999999999999999 566665
No 38
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.7e-21 Score=194.36 Aligned_cols=145 Identities=18% Similarity=0.244 Sum_probs=117.2
Q ss_pred chhHHHhhcccchhccccceeeeecc--CCCCceeeccCCCCCCcchhhHhHHHHHHHHHHcCCceEEeecchhHHhh--
Q psy14958 207 DQMGNIKAGHDLISKLYGKTVFDLLV--RTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILW-- 282 (362)
Q Consensus 207 DQ~~NI~rGrdLi~r~~gqeLp~LL~--sksl~~YiG~dpTa~~lHlGhlmsil~lr~fq~~G~~~i~lIg~i~~~l~-- 282 (362)
+|...+.||.+.+. ..+++..+|+ .+++.+|+||+||+ +||+||++++++.++|+.+|++++++|||+|++..
T Consensus 11 ~~~~l~~rg~~e~~--~~e~L~~~L~~~~~p~~vy~G~~PTG-~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~ 87 (394)
T 2dlc_X 11 EAFGLITKNLQEVL--NPQIIKDVLEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNM 87 (394)
T ss_dssp HHHHHHHTTCSEEE--CHHHHHHHHHTSCSCCEEEEEECCCS-CCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTT
T ss_pred HHHHHHHcCcceec--CHHHHHHHHHccCCCeEEEEEeCCCC-CccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCC
Confidence 48889999976653 4456777775 36789999999999 89999999999999999999999999999763221
Q ss_pred ------------------------c--CCCceEEEechhhhcCCCH-HHHHHHHHhhccHHHHHchhHHHhhhhcCCCCc
Q psy14958 283 ------------------------R--TCNEEAVVNNMSWYNSINV-IDFMNHIARLFRMGDMLKKQSVVTRLESEHGMN 335 (362)
Q Consensus 283 ------------------------~--~~~~~~Iv~NsdW~~~~~~-~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis 335 (362)
- +++++.|++||+|+....+ .+++. +++++|+++|.+..+.+.|.. ++++
T Consensus 88 ~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~-l~~~~t~~~l~r~~~~~~r~~--~~~~ 164 (394)
T 2dlc_X 88 KAPLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFR-LSNIVSQNDAKRAGADVVKQV--ANPL 164 (394)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHH-HHTTSCHHHHHHHTTTTSCCC--SSCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHH-HhCcCcHHHHhcccHhhhccc--CCcc
Confidence 0 3668999999999875445 56665 999999999987765554543 5789
Q ss_pred chhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 336 YTEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 336 ~~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
++||+||+|||+||++ |+|.+|
T Consensus 165 ~g~~~YP~lQaaD~l~----~~~~~v 186 (394)
T 2dlc_X 165 LSGLIYPLMQALDEQF----LDVDCQ 186 (394)
T ss_dssp THHHHHHHHHHHHHHH----TTCSEE
T ss_pred ceeeechhHhhccHhh----hCCCEE
Confidence 9999999999999998 677766
No 39
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.84 E-value=4.3e-21 Score=188.35 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=100.7
Q ss_pred CCceeeccCCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecchhHHhh---c--------------------CCCceEE
Q psy14958 235 PQTVYAGFDPTASSLHIGNLLIL-INLIHWQRAGHQVIALMICLSQILW---R--------------------TCNEEAV 290 (362)
Q Consensus 235 sl~~YiG~dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~i~~~l~---~--------------------~~~~~~I 290 (362)
.+.+|+|++||+ ++|+||+++. ..|++||++|++++++|||+|++.. + ++++++|
T Consensus 12 ~~~v~~G~~PTG-~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 12 HMRILSGMRPTG-KLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp CCEEEEEECCCS-SCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCeEEEeeCCCC-cccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 578999999999 8999999965 5999999999999999999775442 0 3678999
Q ss_pred EechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHh---hhhcCCCCcchhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 291 VNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVT---RLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 291 v~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~---Rl~~~~gis~~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
++||+|.. +.+++..+++.+|+++|.+...||. |++.++++++++|+||+|||+|+++ |+|.+|
T Consensus 91 f~qS~~~~---~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAaDil~----~~~~~v 157 (340)
T 2g36_A 91 FVQSGVKE---HAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAADILI----YKAEGV 157 (340)
T ss_dssp EEGGGCTH---HHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHHHHHT----TTCSEE
T ss_pred EECCchHH---HHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHhhHHH----hCCCEE
Confidence 99999965 7888888999999999999999999 9876668999999999999999987 677775
No 40
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=99.84 E-value=1.2e-21 Score=195.53 Aligned_cols=166 Identities=11% Similarity=0.104 Sum_probs=130.6
Q ss_pred ccCCHHHHHHHHHhhhhhhhhhhh-cccCccchhHHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHh
Q psy14958 177 NSINVIDFMNHIARLFRMGDMLKK-QSVGGSDQMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLL 255 (362)
Q Consensus 177 ~~m~~~dfL~~lg~~f~v~~ML~R-d~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlm 255 (362)
..+++..+++.+|..---..+|+| +.+.|.+.+..+.||.-+.++....-+..+.+++++.+|+|++||++ +|+||++
T Consensus 23 ~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~~PTG~-lHLGh~v 101 (386)
T 3hzr_A 23 RTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKYPQKE-VALEEYI 101 (386)
T ss_dssp SSCCSHHHHHHHTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEECCCSS-CBGGGHH
T ss_pred ccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEeccCCCCC-ccHHHHH
Confidence 468899999998876655667788 46889999999999997665322221222224678999999999998 9999999
Q ss_pred HHHHHHHHHHc-CCceEEeecchhHHh---------------------hc--CCCceEEEechhhhcCCCHHHHHHHHHh
Q psy14958 256 ILINLIHWQRA-GHQVIALMICLSQIL---------------------WR--TCNEEAVVNNMSWYNSINVIDFMNHIAR 311 (362)
Q Consensus 256 sil~lr~fq~~-G~~~i~lIg~i~~~l---------------------~~--~~~~~~Iv~NsdW~~~~~~~dfL~~vgk 311 (362)
++++++|||++ |+..+++|+|++++. .- ++++++|++||+|.. +++.++.++++
T Consensus 102 ~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~--~~~~~~~~l~r 179 (386)
T 3hzr_A 102 TLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG--KMYRTISLVEK 179 (386)
T ss_dssp HHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH--HHHHHHHHHHh
Confidence 99999999996 777777788854322 11 366899999999998 67777777999
Q ss_pred hccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHH
Q psy14958 312 LFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAH 351 (362)
Q Consensus 312 ~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~ 351 (362)
++|+++|+++ +..++++++++|+||+|||||+++
T Consensus 180 ~~t~~~~~~~------~~~~~~~~~g~f~YP~LQaaD~~~ 213 (386)
T 3hzr_A 180 ATAYNVVQPF------FNFEYSDNIGKLASPSIMTASMFS 213 (386)
T ss_dssp HCBHHHHTTT------SCCCSSSBHHHHHHHHHHHHTTSG
T ss_pred hccHHHHHHH------hCCCCCCchhhHhhHHHHHHHHhh
Confidence 9999999763 222357999999999999999996
No 41
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.84 E-value=1.9e-21 Score=188.88 Aligned_cols=183 Identities=13% Similarity=0.103 Sum_probs=146.8
Q ss_pred HHHHHHHHhc-Cchhh-----HHHHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcC
Q psy14958 18 NCREILSEIF-GLKYF-----LSPLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQG 86 (362)
Q Consensus 18 ~~~~~~~~~~-g~~~~-----~~~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 86 (362)
++.+.++.+. |+.|. |.++| .+++|.+++.|+|| +||++++. +++.||+.|
T Consensus 2 ~~~~~~~l~~rg~~e~~~~~~l~~~l---~~~~~~~vy~G~~PTg~lHlG~l~~l~---------------~~~~lq~~g 63 (323)
T 2cyb_A 2 DITEKLRLITRNAEEVVTEEELRQLI---ETKEKPRAYVGYEPSGEIHLGHMMTVQ---------------KLMDLQEAG 63 (323)
T ss_dssp CHHHHHHHHHTTCSEEETHHHHHHHH---HSCSCCEEEEEECCCSCCBHHHHHHHH---------------HHHHHHHTT
T ss_pred CHHHHHHHHHcCChhhcCHHHHHHHH---hCCCCCEEEECcCCCCcchHHHHHHHH---------------HHHHHHHCC
Confidence 4566676665 65444 44455 34789999999999 89999998 899999998
Q ss_pred CCccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC
Q psy14958 87 DCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKP 166 (362)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~ 166 (362)
|.+ +++|||+||+||| +| +.+++.+|++.|.+++..+ .. ++++
T Consensus 64 --~~~--------------~~~i~D~~a~~~d-~~--------~~~~i~~~~~~~~~~~~a~-Gl-----------dp~k 106 (323)
T 2cyb_A 64 --FEI--------------IVLLADIHAYLNE-KG--------TFEEIAEVADYNKKVFIAL-GL-----------DESR 106 (323)
T ss_dssp --CEE--------------EEEECHHHHHHTT-CC--------CHHHHHHHHHHHHHHHHHT-TC-----------CTTT
T ss_pred --CcE--------------EEEECCceeEcCC-CC--------CHHHHHHHHHHHHHHHHHh-CC-----------Cccc
Confidence 998 8999999999999 65 7899999999999987765 10 2788
Q ss_pred cEEEeChhhhccCCHHHHHHHHHhhhhhhhhhhhc--------------------------------ccCccchhHHHhh
Q psy14958 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQ--------------------------------SVGGSDQMGNIKA 214 (362)
Q Consensus 167 ~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~Rd--------------------------------~iGGsDQ~~NI~r 214 (362)
++|++||+|+.+..+.+++..+++++|+++|+++. .+||+||+.|+..
T Consensus 107 ~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l 186 (323)
T 2cyb_A 107 AKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHML 186 (323)
T ss_dssp CEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred eEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHH
Confidence 99999999999878888888899999999999852 1599999999999
Q ss_pred cccchhccccc-----eeeeec------cCCCCceeeccCCCCCCcchhhHhH
Q psy14958 215 GHDLISKLYGK-----TVFDLL------VRTPQTVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 215 GrdLi~r~~gq-----eLp~LL------~sksl~~YiG~dpTa~~lHlGhlms 256 (362)
+++++++.... ..|.+. .|||.++||.++++|+.+ ..+++.
T Consensus 187 ~rdla~~~~~~~p~~l~~pll~~l~G~KMSKS~~n~I~l~d~p~~i-~~Ki~~ 238 (323)
T 2cyb_A 187 ARENLPRLGYSSPVCLHTPILVGLDGQKMSSSKGNYISVRDPPEEV-ERKIRK 238 (323)
T ss_dssp HHHHGGGGTCCCCEEEEECCCBCTTSSBCCTTTTCSCBTTCCHHHH-HHHHHT
T ss_pred HHHHHHhcCCCCceEEecCcccCCCCCcccCCcCceeCCCCCHHHH-HHHHHh
Confidence 99999864222 223332 378999999999998766 555554
No 42
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.82 E-value=1.8e-20 Score=184.66 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=102.9
Q ss_pred CCCCceeeccCCCCCCcchhhHhH-HHHHHHHHHcCCceEEeecchhHHhh----------------------c-CCCce
Q psy14958 233 RTPQTVYAGFDPTASSLHIGNLLI-LINLIHWQRAGHQVIALMICLSQILW----------------------R-TCNEE 288 (362)
Q Consensus 233 sksl~~YiG~dpTa~~lHlGhlms-il~lr~fq~~G~~~i~lIg~i~~~l~----------------------~-~~~~~ 288 (362)
+++..+|+||+||++ +|+||+++ +..|++||+. |+++++|||+|++.. + +++++
T Consensus 20 ~~~~~vysG~~PTG~-lHLGn~~g~l~~~~~lQ~~-~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 97 (351)
T 1yi8_B 20 PARPRVLTGDRPTGA-LHLGHLAGSLQNRVRLQDE-AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKT 97 (351)
T ss_dssp -CCSEEEEEECCSSC-CBHHHHHHTHHHHHHHTSS-SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTE
T ss_pred CCCcEEEEeeCCCCC-ccHHHHHHHHHHHHHHHHh-CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhc
Confidence 457899999999996 99999995 5688889998 999999999774331 0 36789
Q ss_pred EEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhc---CCCCcchhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 289 AVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLES---EHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 289 ~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~---~~gis~~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
+|++||+|.. +.++...++.++++++|.++.++|.|++. ++++++++|+||+|||+||++ |+|.+|
T Consensus 98 ~i~~qS~~~~---~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~----~~~~~v 166 (351)
T 1yi8_B 98 TCVVQSAVPE---LAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAA----FGATLV 166 (351)
T ss_dssp EEEEGGGCTH---HHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHH----HTCSEE
T ss_pred EEEEcCchhh---HHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHh----cCCCEE
Confidence 9999999975 77888889999999999999999999963 367999999999999999998 677765
No 43
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=99.82 E-value=1.4e-20 Score=182.64 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=135.5
Q ss_pred hHHHHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhccccee
Q psy14958 32 FLSPLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSN 106 (362)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (362)
.|.++|+ ++|.+++.|||| +||++++. +++.||+.| |.+ +
T Consensus 19 ~l~~~L~----~~~~~vy~G~~PTg~lHlGhl~~l~---------------~~~~lQ~~g--~~~--------------~ 63 (314)
T 2zp1_A 19 ELREVLK----KDEKSAYIGFEPSGKIHLGHYLQIK---------------KMIDLQNAG--FDI--------------I 63 (314)
T ss_dssp HHHHHHT----SSSEEEEEEECCCSSCBHHHHHHHH---------------HHHHHHHTT--EEE--------------E
T ss_pred HHHHHHc----CCCCEEEEccCCCCCcchhhHHHHH---------------HHHHHHHCC--CCE--------------E
Confidence 3445553 789999999999 89999998 999999998 998 8
Q ss_pred EEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHH
Q psy14958 107 GKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMN 186 (362)
Q Consensus 107 ~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~ 186 (362)
++|||+||++|| +| +.|+|++|+..+.+++..+ . .+ +++++||+|+....+.+++.
T Consensus 64 ~~i~D~~a~~~~-~~--------~~e~i~~~~~~~~~~~~a~-G-------------~d-~~~~~qs~~~~~~~~~~~~~ 119 (314)
T 2zp1_A 64 ILLADLAAYLNQ-KG--------ELDEIRKIGDYNKKVFEAM-G-------------LK-AKYVYGSEFQLDKDYTLNVY 119 (314)
T ss_dssp EEECHHHHHHTT-CC--------CHHHHHHHHHHHHHHHHHT-T-------------CC-CEEEEGGGTTTSHHHHHHHH
T ss_pred EEEecceEecCC-CC--------CHHHHHHHHHHHHHHHHhc-C-------------CC-eEEEECChhhcchHHHHHHH
Confidence 999999999999 77 5899999999888887764 2 23 89999999999877899999
Q ss_pred HHHhhhhhhhhhhhc--------------------------------ccCccchhHHHhhcccchhc-cccceeeeec--
Q psy14958 187 HIARLFRMGDMLKKQ--------------------------------SVGGSDQMGNIKAGHDLISK-LYGKTVFDLL-- 231 (362)
Q Consensus 187 ~lg~~f~v~~ML~Rd--------------------------------~iGGsDQ~~NI~rGrdLi~r-~~gqeLp~LL-- 231 (362)
++++++|+++|+++. .+||+||++|+..+|++... ....+.|.+.
T Consensus 120 ~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~R~i~~~~~~~~~~~~l~~l 199 (314)
T 2zp1_A 120 RLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGL 199 (314)
T ss_dssp HHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHSSSCCEEEEECCCBCT
T ss_pred HHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHHHHHHHHhcCCCcEEeeccccccC
Confidence 999999999999863 15999999999888886641 1112333332
Q ss_pred -----cCCCCceeeccCCCCCCcchhhHhHH
Q psy14958 232 -----VRTPQTVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 232 -----~sksl~~YiG~dpTa~~lHlGhlmsi 257 (362)
.|||.+++|.++++++++ ..++++.
T Consensus 200 ~G~~KMSKS~~~~I~L~d~~~~i-~~KI~~a 229 (314)
T 2zp1_A 200 DGEGKMSSSKGNFIAVDDSPEEI-RAKIKKA 229 (314)
T ss_dssp TSSSBCCTTTTCSCBTTCCHHHH-HHHHHHS
T ss_pred CcccccCCCCcceecCCCCHHHH-HHHHHhC
Confidence 268899999999999877 7777764
No 44
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=99.81 E-value=7.2e-21 Score=192.47 Aligned_cols=164 Identities=9% Similarity=0.019 Sum_probs=131.2
Q ss_pred HHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhh-cCCCccccchhhhhhhcccceeE
Q psy14958 35 PLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQ-QGDCENETDLQDMFLTTKELSNG 107 (362)
Q Consensus 35 ~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 107 (362)
+++++..+++|++++.|||| +||+|++. +++.||+ .| |.+ ++
T Consensus 98 ~l~~~l~~~~~~~vy~G~dPTag~LHLGh~v~~~---------------~~~~lQ~~~G--~~~--------------ii 146 (437)
T 1r6u_A 98 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI---------------FTKWLQDVFN--VPL--------------VI 146 (437)
T ss_dssp HHHHHHTTTCCEEEEEEECCCSSCCBHHHHHHHH---------------HHHHHHHHHT--CCE--------------EE
T ss_pred HHHHHHhcCCCcEEEEcccCCCCCccHHHHHHHH---------------HHHHHHHHhC--CcE--------------EE
Confidence 45555566899999999999 79999988 7888998 88 998 89
Q ss_pred EEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHH
Q psy14958 108 KIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNH 187 (362)
Q Consensus 108 lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~ 187 (362)
+|||+||+||| .+|.|+|.+|+..+.+++..+- -+++++.|++||+|..++ .+|+++
T Consensus 147 lIgD~ta~igd---------~lt~e~i~~n~~~~~~~~lA~G------------lDp~kt~i~~nSd~~~~l--~~~~~l 203 (437)
T 1r6u_A 147 QMTDDEKYLWK---------DLTLDQAYGDAVENAKDIIACG------------FDINKTFIFSDLDYMGMS--SGFYKN 203 (437)
T ss_dssp EECHHHHHHHS---------SCCHHHHHHHHHHHHHHHHTTT------------CCGGGEEEEEHHHHGGGC--TTHHHH
T ss_pred EEecceeeecC---------CCCHHHHHHHHHHHHHHHHHhC------------CCccceEEEechhhhhhH--HHHHHH
Confidence 99999999998 5899999999988765533211 126789999999999876 499997
Q ss_pred HHhhhhhhhhhhhcc----------------------------------cC-----------ccchhHHHhhcccchhcc
Q psy14958 188 IARLFRMGDMLKKQS----------------------------------VG-----------GSDQMGNIKAGHDLISKL 222 (362)
Q Consensus 188 lg~~f~v~~ML~Rd~----------------------------------iG-----------GsDQ~~NI~rGrdLi~r~ 222 (362)
+ ++|++|+++++ .| |+|||+||..||+++++.
T Consensus 204 ~---~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~ 280 (437)
T 1r6u_A 204 V---VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRI 280 (437)
T ss_dssp H---HHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGG
T ss_pred H---HHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHHHHHh
Confidence 5 48999998861 24 999999999999999864
Q ss_pred ccc-----e---eeeec-----cCCCCce-eeccCCCCCCcchhhHhH
Q psy14958 223 YGK-----T---VFDLL-----VRTPQTV-YAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 223 ~gq-----e---Lp~LL-----~sksl~~-YiG~dpTa~~lHlGhlms 256 (362)
... . ++.+- .|||.++ +|.++++|+++ .+++++
T Consensus 281 ~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I-~kKI~~ 327 (437)
T 1r6u_A 281 GYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQI-KTKVNK 327 (437)
T ss_dssp TCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHH-HHHHHH
T ss_pred CCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHH-HHHhhc
Confidence 312 1 22221 2788888 99999999888 888887
No 45
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=99.81 E-value=8.5e-21 Score=189.68 Aligned_cols=172 Identities=12% Similarity=0.020 Sum_probs=133.8
Q ss_pred HHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhccccee
Q psy14958 33 LSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSN 106 (362)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (362)
+.++++...+|+|++++.|||| +||+|.+. +++.||+.|. +.+
T Consensus 62 ~~~l~~~l~~g~~~~vy~G~~PTa~~lHlGh~v~~~---------------~~~~lQ~~~~-~~v--------------- 110 (393)
T 3hv0_A 62 FEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFL---------------FTKYLQDTFK-VPL--------------- 110 (393)
T ss_dssp HHHHHHHHHTTCCCEEEEEECCSSSSCBSTTHHHHH---------------HHHHHHHHHC-CCE---------------
T ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCCccHHHHHHHH---------------HHHHHHHhcC-CCe---------------
Confidence 3355665567899999999999 89999998 8999999961 333
Q ss_pred EEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHH
Q psy14958 107 GKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMN 186 (362)
Q Consensus 107 ~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~ 186 (362)
++ +||||+ +..+|+.++.|+|.+|+..+.+++..+ . . +++++.|++|++|..++ +.+|++
T Consensus 111 ~i------~I~D~~-~~~~r~~~~~e~i~~~~~~~~~~~lA~-G---------l--Dp~kt~i~~ns~~~~~~-~~~~~~ 170 (393)
T 3hv0_A 111 VI------QLTDDE-KFIFKSNLTLEETHNYAYENMKDIIAC-G---------F--DPELTFIFTNLEYIAEL-YPDILR 170 (393)
T ss_dssp EE------EECHHH-HHHHCTTCCHHHHHHHHHHHHHHHHTT-C---------C--CTTTEEEEEHHHHHHHH-HHHHHH
T ss_pred Ee------eccChH-HHhhccCCCHHHHHHHHHHHHHHHHHc-C---------C--CCcceEEEECCHHHHHH-HHHHHH
Confidence 23 789997 888999999999999999888776542 1 1 27789999999999999 999998
Q ss_pred HHHhhhhhhhhhhhc--------------------c-------------------cCccchhHHHhhcccchhccccc--
Q psy14958 187 HIARLFRMGDMLKKQ--------------------S-------------------VGGSDQMGNIKAGHDLISKLYGK-- 225 (362)
Q Consensus 187 ~lg~~f~v~~ML~Rd--------------------~-------------------iGGsDQ~~NI~rGrdLi~r~~gq-- 225 (362)
+++++|+++|+++. . .||+||++|+..||+++++....
T Consensus 171 -l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p 249 (393)
T 3hv0_A 171 -IEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKP 249 (393)
T ss_dssp -HHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCCC
T ss_pred -HHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCCc
Confidence 99999999999984 1 38999999999999999875322
Q ss_pred ---eeeeec--------cCCCCce-eeccCCCCCCcchhhHhHH
Q psy14958 226 ---TVFDLL--------VRTPQTV-YAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 226 ---eLp~LL--------~sksl~~-YiG~dpTa~~lHlGhlmsi 257 (362)
+.|.+. .|||.++ +|.++++|+.+ ..+++++
T Consensus 250 ~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i-~kKI~k~ 292 (393)
T 3hv0_A 250 SSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESI-RNKIMKY 292 (393)
T ss_dssp EEEEECCCCC-------------CCCCBTTCCHHHH-HHHHHHH
T ss_pred eeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHH-HHHHHhh
Confidence 122221 2677776 99999999887 7777764
No 46
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.81 E-value=1.7e-20 Score=185.88 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=140.7
Q ss_pred hHHHHHHHHhc-Cchhh-----HHHHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhc
Q psy14958 17 MNCREILSEIF-GLKYF-----LSPLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQ 85 (362)
Q Consensus 17 ~~~~~~~~~~~-g~~~~-----~~~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (362)
|++.+.++.+. |+.++ |.++|+. +|.+++.|||| +||++.+. +++.||+.
T Consensus 5 ~~~~~~~~l~~Rg~~e~~~~~~L~~~L~~----~~~~vy~G~~PTG~lHlG~~~~~l---------------~~~~~~q~ 65 (372)
T 1n3l_A 5 PSPEEKLHLITRNLQEVLGEEKLKEILKE----RELKIYWGTATTGKPHVAYFVPMS---------------KIADFLKA 65 (372)
T ss_dssp CCHHHHHHHHHTTCSEEECHHHHHHHHTT----SCCEEEEEECCSSCCBGGGHHHHH---------------HHHHHHHT
T ss_pred CCHHHHHHHHHcCCeeecCHHHHHHHHhc----CCCEEEeCcCCCCcccHHHHHHHH---------------HHHHHHHC
Confidence 45667777665 76444 4455542 67899999999 89999988 89999998
Q ss_pred CCCccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHH-HHHHHhhhhhhhhcccCCCC
Q psy14958 86 GDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKN-IKTIFRNHEQYFWKDRKDSL 164 (362)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Q-i~~il~n~~~~~~~~~~~~~ 164 (362)
| |.+ +++|||+||++|||+ +++++.+|.+.|.+| +..++.- -+ -++
T Consensus 66 g--~~~--------------i~~I~D~ha~t~~~~---------~~~~l~~~~~~~~~~~i~~~lla------~G--ldp 112 (372)
T 1n3l_A 66 G--CEV--------------TILFADLHAYLDNMK---------APWELLELRVSYYENVIKAMLES------IG--VPL 112 (372)
T ss_dssp T--CEE--------------EEEECHHHHHHTTTT---------SCHHHHHHHHHHHHHHHHHHHHH------HT--CCC
T ss_pred C--CCE--------------EEEEcCCceeeCCCC---------CHHHHHHHHHHHHHHHHHHHHHH------cC--CCh
Confidence 8 998 899999999999996 457899999999998 6665420 01 137
Q ss_pred CCcEEEeChhh-hccCCHHHHHHHHHhhhhhhhhhhhc--------------------------------ccCccchhHH
Q psy14958 165 KPPIVVNNMSW-YNSINVIDFMNHIARLFRMGDMLKKQ--------------------------------SVGGSDQMGN 211 (362)
Q Consensus 165 ~~~~i~nN~~W-l~~m~~~dfL~~lg~~f~v~~ML~Rd--------------------------------~iGGsDQ~~N 211 (362)
+++.|++||+| +.+....+|++ +++++|+++|.+.. .+||+||+.|
T Consensus 113 ~k~~i~~qS~~~~~~~~~~~~~~-l~~~~t~~~~~~~~~~v~~~~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~ 191 (372)
T 1n3l_A 113 EKLKFIKGTDYQLSKEYTLDVYR-LSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKI 191 (372)
T ss_dssp TTEEEEEGGGTTTSHHHHHHHHH-HHTTSCHHHHHHHTTTTSCCCSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHH
T ss_pred hhcEEEECCeecccHHHHHHHHH-HHhhCcHHHHHhchhhhhcccCCCcceeeecchHhhccHHHhcCCEEEcChhHHHH
Confidence 88999999999 77788999999 99999999998751 1599999999
Q ss_pred Hhhcccchhccccc------eeeeec------cCCCCce-eeccCCCCCCcchhhHhH
Q psy14958 212 IKAGHDLISKLYGK------TVFDLL------VRTPQTV-YAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 212 I~rGrdLi~r~~gq------eLp~LL------~sksl~~-YiG~dpTa~~lHlGhlms 256 (362)
+..|++++++. +. ..|.+. .|||.++ +|.++++|+++ ..+++.
T Consensus 192 ~~l~rdl~~r~-~~~~p~~l~~pll~gldG~KMSKS~~ns~I~L~d~p~~i-~kKi~~ 247 (372)
T 1n3l_A 192 FTFAEKYLPAL-GYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDV-KKKLKK 247 (372)
T ss_dssp HHHHHHHGGGG-TCCCCEEEEECCCCCSSCC-------CCSCBTTCCHHHH-HHHHHT
T ss_pred HHHHHHHHHHc-CCCCCEEEecCccCCCCcccccCCCCCCeEeccCCHHHH-HHHHHH
Confidence 99999999864 32 233332 2788888 99999998777 666654
No 47
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.6e-20 Score=183.45 Aligned_cols=190 Identities=14% Similarity=0.126 Sum_probs=143.7
Q ss_pred hHHHHHHHHhc-Cchhh-----HHHHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhc
Q psy14958 17 MNCREILSEIF-GLKYF-----LSPLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQ 85 (362)
Q Consensus 17 ~~~~~~~~~~~-g~~~~-----~~~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (362)
|++.+.++.+. |+.|+ |.++|++ .++|++++.|||| +||++... +++.||+.
T Consensus 7 ~~~~~~~~l~~rg~~e~~~~e~L~~~L~~--~~~p~~vy~G~~PTG~LHlG~~~~al---------------~~~~~~q~ 69 (394)
T 2dlc_X 7 VDPNEAFGLITKNLQEVLNPQIIKDVLEV--QKRHLKLYWGTAPTGRPHCGYFVPMT---------------KLADFLKA 69 (394)
T ss_dssp -CHHHHHHHHHTTCSEEECHHHHHHHHHT--SCSCCEEEEEECCCSCCBGGGHHHHH---------------HHHHHHHT
T ss_pred CCHHHHHHHHHcCcceecCHHHHHHHHHc--cCCCeEEEEEeCCCCCccHHHHHHHH---------------HHHHHHHc
Confidence 46777887776 77554 4455543 4789999999999 89999988 89999998
Q ss_pred CCCccccchhhhhhhcccceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q psy14958 86 GDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLK 165 (362)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~ 165 (362)
| |.+ +++|||+||++|||+++ .|.+++|++.|++|+.+++... .-+++
T Consensus 70 g--~~~--------------ii~I~D~ha~t~~~~~~--------~e~~~~~~~~~~~~i~~~l~a~--------Gldp~ 117 (394)
T 2dlc_X 70 G--CEV--------------TVLLADLHAFLDNMKAP--------LEVVNYRAKYYELTIKAILRSI--------NVPIE 117 (394)
T ss_dssp T--CEE--------------EEEECHHHHHHTTTSSC--------TTHHHHHHHHHHHHHHHHHHHT--------TCCCT
T ss_pred C--CcE--------------EEEEcCCccccCCCCCc--------HHHHHHHHHHHHHHHHHHHHHc--------CCChh
Confidence 8 998 89999999999999865 4789999999999999987411 11367
Q ss_pred CcEEEeChhhhcc-CCHHHHHHHHHhhhhhhhhhhhc--------------------------------ccCccchhHHH
Q psy14958 166 PPIVVNNMSWYNS-INVIDFMNHIARLFRMGDMLKKQ--------------------------------SVGGSDQMGNI 212 (362)
Q Consensus 166 ~~~i~nN~~Wl~~-m~~~dfL~~lg~~f~v~~ML~Rd--------------------------------~iGGsDQ~~NI 212 (362)
++.|++||+|+.. .-+.+++. +++++|+++|.... .+||+||+.|+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~-l~~~~t~~~l~r~~~~~~r~~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~ 196 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFR-LSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIF 196 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHH-HHTTSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred HcEEEeCchhcchHHHHHHHHH-HhCcCcHHHHhcccHhhhcccCCccceeeechhHhhccHhhhCCCEEecCccHHHHH
Confidence 8999999999863 34456775 99999999998652 15999999999
Q ss_pred hhcccchhccccc-----eeeee---c----cCCCCcee-eccCCCCCCcchhhHhHH
Q psy14958 213 KAGHDLISKLYGK-----TVFDL---L----VRTPQTVY-AGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 213 ~rGrdLi~r~~gq-----eLp~L---L----~sksl~~Y-iG~dpTa~~lHlGhlmsi 257 (362)
..+++++++.... ..|.+ - .|||.+++ |.++++|+++ ..+++..
T Consensus 197 ~l~rdl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~p~~i-~kKI~ka 253 (394)
T 2dlc_X 197 VLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKIDLLEEPKQV-KKKINSA 253 (394)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCCCCC----------CCSCBTTCCHHHH-HHHHHHS
T ss_pred HHHHHHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCCEEeccCCHHHH-HHHHHHh
Confidence 9999999864211 12322 2 26788886 9999998877 7777754
No 48
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=99.78 E-value=5.6e-20 Score=186.51 Aligned_cols=172 Identities=15% Similarity=0.076 Sum_probs=139.2
Q ss_pred HHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeE
Q psy14958 34 SPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNG 107 (362)
Q Consensus 34 ~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 107 (362)
.++++...+|+|++++.|||| +||+|.+. +++.||+.| ++.+ +
T Consensus 80 ~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v~~~---------------~l~~lQ~~~-g~~v---------------~ 128 (451)
T 3foc_A 80 EEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFI---------------FTKYLQDAF-KCYV---------------V 128 (451)
T ss_dssp HHHHHHHHTTCCEEEEEEECCCSSCCBHHHHHHHH---------------HHHHHHHHH-TCEE---------------E
T ss_pred HHHHHHHhcCCCeEEEecCCCCCCCccHHHHHHHH---------------HHHHHHHcc-CceE---------------E
Confidence 345555567899999999999 89999998 889999995 1444 3
Q ss_pred EEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHH
Q psy14958 108 KIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMN 186 (362)
Q Consensus 108 lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~ 186 (362)
| +||||+ +..+|+.+|.|+|++|++.+.+++..+ || ++++.|++||+|+....+.+++.
T Consensus 129 I------~IgD~~-a~~~r~~lt~E~I~~n~~~~~~~~lA~GlD-------------pekt~i~~nSd~~~~~~~~~~l~ 188 (451)
T 3foc_A 129 I------QITDDE-KFLRNRSLSYAEVDSYTRENIKDIIACGFD-------------PDKTFIFINSQYLSLKNRYRFSC 188 (451)
T ss_dssp E------EECHHH-HHHHCTTCCHHHHHHHHHHHHHHHHTTTCC-------------GGGEEEEEHHHHTTSTTHHHHHH
T ss_pred E------EeeCcH-HhhcccCCCHHHHHHHHHHHHHHHHHcCCC-------------CCceEEEeCchhhcchhHHHHHH
Confidence 3 589995 778899999999999999888777664 33 67899999999999889999999
Q ss_pred HHHhhhhhhhhhhhc--------------------cc-------------------------------------------
Q psy14958 187 HIARLFRMGDMLKKQ--------------------SV------------------------------------------- 203 (362)
Q Consensus 187 ~lg~~f~v~~ML~Rd--------------------~i------------------------------------------- 203 (362)
++++++||++|++++ .+
T Consensus 189 ~L~r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (451)
T 3foc_A 189 LVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVL 268 (451)
T ss_dssp HHHHTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCC
T ss_pred HHHhhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhh
Confidence 999999999999985 12
Q ss_pred ------------------------CccchhHHHhhcccchhccccc--------eeeeec-----cCCCCce-eeccCCC
Q psy14958 204 ------------------------GGSDQMGNIKAGHDLISKLYGK--------TVFDLL-----VRTPQTV-YAGFDPT 245 (362)
Q Consensus 204 ------------------------GGsDQ~~NI~rGrdLi~r~~gq--------eLp~LL-----~sksl~~-YiG~dpT 245 (362)
||.||..++..+|++.++.... -++.|- +|||.++ ||++.++
T Consensus 269 ~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~ 348 (451)
T 3foc_A 269 SPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDT 348 (451)
T ss_dssp CHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCC
T ss_pred hhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCC
Confidence 6999999999999999854211 133331 2778876 9999999
Q ss_pred CCCcchhhHhHH
Q psy14958 246 ASSLHIGNLLIL 257 (362)
Q Consensus 246 a~~lHlGhlmsi 257 (362)
++++ ..+++++
T Consensus 349 p~~I-~kKI~k~ 359 (451)
T 3foc_A 349 PAQI-KNKINRY 359 (451)
T ss_dssp HHHH-HHHHHHH
T ss_pred HHHH-HHHHhhh
Confidence 9888 7888885
No 49
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=99.77 E-value=1.4e-19 Score=180.97 Aligned_cols=170 Identities=14% Similarity=0.034 Sum_probs=126.4
Q ss_pred HHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhccccee
Q psy14958 33 LSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSN 106 (362)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (362)
+.++++...+|+|++++.|+|| +||+|++. +++.||+.| ++.+ +
T Consensus 66 ~~~~l~~~~~~~~~~vy~G~~PTg~~lHLGh~v~~~---------------~~~~lQ~~~-~~~v--------------~ 115 (395)
T 3i05_A 66 LNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFM---------------FTKWLQDSF-RVPL--------------V 115 (395)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCCSSCCBGGGSHHHH---------------HHHHHHHHH-TCCE--------------E
T ss_pred HHHHHHHHhcCCCeEEEEeecCCCccchHHHHHHHH---------------HHHHHHHhc-CCcE--------------E
Confidence 3355665567899999999999 89999998 788899985 1444 3
Q ss_pred EEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHH
Q psy14958 107 GKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFM 185 (362)
Q Consensus 107 ~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL 185 (362)
++ ||||+ +.-+|+ ++.|+|++|+..+.+|+..+ +| ++++.|++|++|.. .-+.+++
T Consensus 116 i~-------I~D~~-~~l~~~-~~~e~i~~~~~~~~~~~lA~GlD-------------p~kt~i~~ns~~~~-~~~~~v~ 172 (395)
T 3i05_A 116 IQ-------MTDDE-KFYFRN-IPMEQVEAMTTENIKDIIAMGFD-------------PELTFIFRDFDYMG-CMYRTVA 172 (395)
T ss_dssp EE-------ECHHH-HHHHSC-CCHHHHHHHHHHHHHHHHTTTCC-------------TTSEEEEEHHHHTT-TSHHHHH
T ss_pred EE-------EcchH-HHhcCC-CCHHHHHHHHHHHHHHHHHcCCC-------------CCceEEEEcCHHHH-HHHHHHH
Confidence 44 56665 344577 99999999999888887654 22 77899999999998 6678888
Q ss_pred HHHHhhhhhhhhhhhc----------------------------------------ccCccchhHHHhhcccchhccccc
Q psy14958 186 NHIARLFRMGDMLKKQ----------------------------------------SVGGSDQMGNIKAGHDLISKLYGK 225 (362)
Q Consensus 186 ~~lg~~f~v~~ML~Rd----------------------------------------~iGGsDQ~~NI~rGrdLi~r~~gq 225 (362)
+ +++++|+++|+++. ..||+||++|+..||+++++....
T Consensus 173 ~-l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~ 251 (395)
T 3i05_A 173 K-IERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYL 251 (395)
T ss_dssp H-HHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCC
T ss_pred H-HHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCCC
Confidence 7 99999999999873 137999999999999999875322
Q ss_pred -----e---eeeec-----cCCCCceeeccCCCCCCcchhhHhHH
Q psy14958 226 -----T---VFDLL-----VRTPQTVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 226 -----e---Lp~LL-----~sksl~~YiG~dpTa~~lHlGhlmsi 257 (362)
+ ++.|- .|||.+++|.++++|+++ ..+++++
T Consensus 252 ~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D~p~~i-~kKI~k~ 295 (395)
T 3i05_A 252 KPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTDTEKMV-KDKINKH 295 (395)
T ss_dssp CCEEEEECCCCCC-------------CCBTTCCHHHH-HHHHC--
T ss_pred CceeeccccccCCCCCcccCCCCCCCcccCCCCHHHH-HHHHHhh
Confidence 1 22221 267899999999999988 8888874
No 50
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=99.76 E-value=3.9e-19 Score=181.51 Aligned_cols=168 Identities=9% Similarity=-0.013 Sum_probs=128.7
Q ss_pred HHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhh-cCCCccccchhhhhhhcccceeE
Q psy14958 35 PLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQ-QGDCENETDLQDMFLTTKELSNG 107 (362)
Q Consensus 35 ~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 107 (362)
++++...+++|++++.|||| +||+|++. +++.||+ .| |.+ ++
T Consensus 145 ~l~~~l~~~~~~~vy~G~dPTag~LHLGh~v~~~---------------~~~~lQ~~~g--~~~--------------ii 193 (477)
T 1r6t_A 145 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI---------------FTKWLQDVFN--VPL--------------VI 193 (477)
T ss_dssp HHHHHHHTTCCEEEEEEECCCTTCCBGGGHHHHH---------------HHHHHHHHHT--CCE--------------EE
T ss_pred HHHHHHhcCCCcEEEEcccCCCCCccHHHHHHHH---------------HHHHHHHHhC--CcE--------------EE
Confidence 44555566889999999999 89999988 7788998 88 998 89
Q ss_pred EEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhcc--CCHHHHH
Q psy14958 108 KIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNS--INVIDFM 185 (362)
Q Consensus 108 lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~--m~~~dfL 185 (362)
+|||+||+||| .+|.|+|.+|+..+..++ +.. .-+++++.|++||+|..+ .-+.++.
T Consensus 194 lI~D~~a~igd---------~lt~e~i~~n~~~~~~~~---lA~---------GlDp~k~~i~~nsd~~~~l~~~~~~~~ 252 (477)
T 1r6t_A 194 QMTDDEKYLWK---------DLTLDQAYGDAVENAKDI---IAC---------GFDINKTFIFSDLDYMGMSSGFYKNVV 252 (477)
T ss_dssp EECHHHHHHHS---------SCCHHHHHHHHHHHHHHH---HTT---------CCCTTSEEEEEHHHHGGGCTTHHHHHH
T ss_pred EEecceeeecC---------CCCHHHHHHHHHHHHHHH---HHh---------CCCCCceEEEechhhhcccHHHHHHHH
Confidence 99999999998 589999999999875553 321 113788999999999975 3333444
Q ss_pred HHHHhhhhhhhhhhhc----------------------c------c-----------CccchhHHHhhcccchhccccc-
Q psy14958 186 NHIARLFRMGDMLKKQ----------------------S------V-----------GGSDQMGNIKAGHDLISKLYGK- 225 (362)
Q Consensus 186 ~~lg~~f~v~~ML~Rd----------------------~------i-----------GGsDQ~~NI~rGrdLi~r~~gq- 225 (362)
+ +++..|+++|.+|- . . ||+|||+||..||+++++....
T Consensus 253 ~-l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~ 331 (477)
T 1r6t_A 253 K-IQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPK 331 (477)
T ss_dssp H-HHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCC
T ss_pred H-HHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhCCCC
Confidence 3 77777777777641 1 1 5999999999999999864312
Q ss_pred ----eeeeec--------cCCCCce-eeccCCCCCCcchhhHhH
Q psy14958 226 ----TVFDLL--------VRTPQTV-YAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 226 ----eLp~LL--------~sksl~~-YiG~dpTa~~lHlGhlms 256 (362)
..|.+. .|||.++ +|.++++|+++ .+++++
T Consensus 332 p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i-~kKi~~ 374 (477)
T 1r6t_A 332 PALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQI-KTKVNK 374 (477)
T ss_dssp CEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHH-HHHHHH
T ss_pred ceeeecccccCCCCCccccCCCCCCCceeecCCHHHH-HHHhcc
Confidence 122221 2788888 99999999888 888877
No 51
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=99.76 E-value=2.1e-19 Score=181.57 Aligned_cols=169 Identities=9% Similarity=-0.012 Sum_probs=124.2
Q ss_pred HHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhh-cCCCccccchhhhhhhcccceeE
Q psy14958 35 PLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQ-QGDCENETDLQDMFLTTKELSNG 107 (362)
Q Consensus 35 ~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 107 (362)
++++...+++|++++.|||| +||+|++. +++.||+ .| |.+ ++
T Consensus 92 ~l~~~l~~g~~~~vy~G~dPTag~LHLGh~v~~~---------------~l~~lQ~~~g--~~~--------------i~ 140 (432)
T 2ip1_A 92 KILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFV---------------FTKWLQEVFD--VPL--------------VI 140 (432)
T ss_dssp HHHHHHHHTCCCEEEEEECCCSSCCBGGGHHHHH---------------HHHHHHHHHT--CCE--------------EE
T ss_pred HHHHHHhcCCCeEEEEeecCCCCCccHHHHHHHH---------------HHHHHHHHcC--CeE--------------EE
Confidence 34444455889999999999 89999988 7889999 88 998 89
Q ss_pred EEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHH
Q psy14958 108 KIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNH 187 (362)
Q Consensus 108 lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~ 187 (362)
+|||+||+||||+ +|.+++.+|+..+. ..++.. . -+++++.|++||+|.. ..+.+++..
T Consensus 141 lI~D~ta~l~~~~--------~t~e~i~~~~~~~~---~~~lA~-------G--lDp~k~~i~~nSd~~~-~~~~~~~~~ 199 (432)
T 2ip1_A 141 ELTDDEKFLFKHK--------LTINDVKNFARENA---KDIIAV-------G--FDPKNTFIFSDLQYMG-GAFYETVVR 199 (432)
T ss_dssp EECHHHHHHHCTT--------CCHHHHHHHHHHHH---HHHHTT-------T--CCGGGEEEEEHHHHCS-HHHHHHHHH
T ss_pred EEecccceeCCCC--------CCHHHHHHHHHHHH---HHHHHh-------C--CCCCceEEEeCchhhh-hhHHHHHHH
Confidence 9999999999996 67899999987663 334431 1 1267899999999986 456666665
Q ss_pred HHhhhhhhhhhhh---c-------------------cc-----------------CccchhHHHhhcccchhccccc---
Q psy14958 188 IARLFRMGDMLKK---Q-------------------SV-----------------GGSDQMGNIKAGHDLISKLYGK--- 225 (362)
Q Consensus 188 lg~~f~v~~ML~R---d-------------------~i-----------------GGsDQ~~NI~rGrdLi~r~~gq--- 225 (362)
+++..+..++-+| + .+ ||+|||+|+..||+++++....
T Consensus 200 v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~ 279 (432)
T 2ip1_A 200 VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPA 279 (432)
T ss_dssp HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHTSCCCE
T ss_pred HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccCcHHHHHHHHHHHHHhCCCCce
Confidence 6655555555443 1 01 7999999999999999864212
Q ss_pred --eeeeec--------cCCCCce-eeccCCCCCCcchhhHhH
Q psy14958 226 --TVFDLL--------VRTPQTV-YAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 226 --eLp~LL--------~sksl~~-YiG~dpTa~~lHlGhlms 256 (362)
..|.+. .|||.++ ||.++++|+++ ..++++
T Consensus 280 ~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i-~~KI~~ 320 (432)
T 2ip1_A 280 LLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQI-QKKINK 320 (432)
T ss_dssp EEEECCCCCTTC--------CGGGCCBTTCCHHHH-HHHHHH
T ss_pred eeccccccCCCCCccccCCCCCCCeEeccCCHHHH-HHHhhh
Confidence 112221 2678888 99999999888 888877
No 52
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=99.75 E-value=6.3e-19 Score=176.17 Aligned_cols=168 Identities=10% Similarity=-0.012 Sum_probs=137.1
Q ss_pred HHHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhh-cCCCccccchhhhhhhcccceeE
Q psy14958 34 SPLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQ-QGDCENETDLQDMFLTTKELSNG 107 (362)
Q Consensus 34 ~~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 107 (362)
.++++...+++|++++.|+|| +||+|.+. +++.||+ .| |.+ ++
T Consensus 62 ~~l~~~~~~~~p~~i~sG~~PTG~lHLGh~v~~~---------------~~~~lQ~~~g--~~~--------------~i 110 (392)
T 3jxe_A 62 DLILKDYEEGRGFFLYTGRGPSGPMHIGHIIPFF---------------ATKWLQEKFG--VNL--------------YI 110 (392)
T ss_dssp HHHHHHHHTTCCCEEEEEECCSSCCBHHHHHHHH---------------HHHHHHHHHC--CEE--------------EE
T ss_pred HHHHHHHhcCCCeEEEeccCCCCchhHHHHHHHH---------------HHHHHHHhcC--Cce--------------EE
Confidence 345555567999999999999 89999887 6778998 78 998 79
Q ss_pred EEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHH
Q psy14958 108 KIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNH 187 (362)
Q Consensus 108 lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~ 187 (362)
+|||.||+++|| .++.|++.+|+..+.+++..+- -+|++++|++||+|.. +.+++.+
T Consensus 111 ~IaD~ha~~~~~--------~~~~e~i~~~~~~~~~~~lA~G------------lDp~kt~i~~qS~~~~---~~~~~~~ 167 (392)
T 3jxe_A 111 QITDDEKFLFKE--------NLTFDDTKRWAYDNILDIIAVG------------FDPDKTFIFQNSEFTK---IYEMAIP 167 (392)
T ss_dssp EECHHHHHHHCS--------SCCHHHHHHHHHHHHHHHHTTC------------CCTTSEEEEETTTSTH---HHHHHHH
T ss_pred EecchHHhhcCC--------CCCHHHHHHHHHHHHHHHHHhC------------cCccceEEEECchhHH---HHHHHHH
Confidence 999999999987 4899999999987777654421 1378999999999998 8888888
Q ss_pred HHhhhhhhhhhhhc-----------------------------ccCccchhHHHhhcccchhccccce--------eeee
Q psy14958 188 IARLFRMGDMLKKQ-----------------------------SVGGSDQMGNIKAGHDLISKLYGKT--------VFDL 230 (362)
Q Consensus 188 lg~~f~v~~ML~Rd-----------------------------~iGGsDQ~~NI~rGrdLi~r~~gqe--------Lp~L 230 (362)
+++++|+++|.++. ..||+||+.|+..+|+++++..... ++.|
T Consensus 168 l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gL 247 (392)
T 3jxe_A 168 IAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSL 247 (392)
T ss_dssp HHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEECCCCCS
T ss_pred HHhhCCHHHHhhhhccCCCCchHHHHHHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcCCCCCeeeecccccCC
Confidence 99999999999883 1499999999999999998643211 2222
Q ss_pred c-----cCCCCce-eeccCCCCCCcchhhHhH
Q psy14958 231 L-----VRTPQTV-YAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 231 L-----~sksl~~-YiG~dpTa~~lHlGhlms 256 (362)
- .|||.++ ||+++++|+++ ..++++
T Consensus 248 dG~~~KMSKS~~ns~I~L~D~p~~I-~kKI~k 278 (392)
T 3jxe_A 248 TSLSGKMSASKPETAIYLTDSPEDV-EKKVWK 278 (392)
T ss_dssp SCSSSCCCTTSGGGCCBTTCCHHHH-HHHHHT
T ss_pred CCCccccccCCCCCeeeCCCCHHHH-HHHHHh
Confidence 1 2678888 99999999888 778877
No 53
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=99.69 E-value=4.5e-17 Score=159.04 Aligned_cols=117 Identities=11% Similarity=0.157 Sum_probs=86.5
Q ss_pred CceeeccCCCCCCcchhhHhH-HHHHHHHHHcCCceEEeecchhHHh--------------------hc--CCCceEEEe
Q psy14958 236 QTVYAGFDPTASSLHIGNLLI-LINLIHWQRAGHQVIALMICLSQIL--------------------WR--TCNEEAVVN 292 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlms-il~lr~fq~~G~~~i~lIg~i~~~l--------------------~~--~~~~~~Iv~ 292 (362)
..+|+|++||+ ++|+||+++ +..|.++|+ ||+++++|||+|++. .- ++++++|+.
T Consensus 2 ~~vysG~~PTG-~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~ 79 (328)
T 1i6k_A 2 KTIFSGIQPSG-VITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFI 79 (328)
T ss_dssp CEEEEEECCCS-CCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred CEEEEeeCCCC-cccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEe
Confidence 46999999999 899999995 569999999 999999999976333 11 367899999
Q ss_pred chhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 293 NMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 293 NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
+|+|....++ .+. +....+++++-+.-.|+.+.+.++++++++|+||+|||+|+++ |+|.+|
T Consensus 80 qS~~~~~~~l--~w~-l~~~~~~~~l~r~~~~k~~~~~~~~~~~g~f~YPvLQaaDil~----~~~~~v 141 (328)
T 1i6k_A 80 QSEVPAHAQA--AWM-LQCIVYIGELERMTQFKEKSAGKEAVSAGLLTYPPLMAADILL----YNTDIV 141 (328)
T ss_dssp GGGCTHHHHH--HHH-HHHHSCHHHHHTCHHHHHHHTTCSSCCHHHHTHHHHHHHHHHT----TTCSEE
T ss_pred cCchhhhhHH--HHH-HhccccHHHHHHHHHHHHHHhccCCCCchhhccHHHHHHHHHH----hCCCEE
Confidence 9999653222 121 2334444444333456665543467999999999999999988 677765
No 54
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=99.69 E-value=1.2e-17 Score=162.84 Aligned_cols=154 Identities=11% Similarity=0.078 Sum_probs=118.9
Q ss_pred CcceEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCcccccc
Q psy14958 44 TQGISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVG 117 (362)
Q Consensus 44 ~~~~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IG 117 (362)
.+++++.|+|| +||++ +++ +++.||+ | |++ +++|||+||++|
T Consensus 2 ~~~~vysG~~PTg~lHlG~~lg~l~---------------~~~~lQ~-g--~~~--------------~~~iaD~ha~~~ 49 (322)
T 3tzl_A 2 NAMRVLTGLQPSGDLHIGNYFGAIK---------------QMVDAQE-K--SQM--------------FMFIANYHAMTS 49 (322)
T ss_dssp --CCBEEEECCSSCCBHHHHHHTHH---------------HHHHTTT-T--SCC--------------EEEECHHHHTTT
T ss_pred CceEEEEccCCCccccHHHHHHHHH---------------HHHHHhc-C--CCE--------------EEEEecCeeecC
Confidence 46899999999 89998 687 8889999 7 999 899999999999
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhh
Q psy14958 118 DPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDM 197 (362)
Q Consensus 118 DPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~M 197 (362)
||+ .+++.+|+..+..++..+ +. +|++++|++||+|.. ..+++..+++++++++|
T Consensus 50 ~~~----------~~~l~~~~~~~~~~~lA~----------Gl--dp~k~~i~~qS~~~~---~~el~~~l~~~~~~~~l 104 (322)
T 3tzl_A 50 SQD----------GEKLKQNSLKAAAAFLSL----------GI--DPQKSVFWLQSDVKE---VMELYWILSQFTPMGLL 104 (322)
T ss_dssp CCC----------HHHHHHHHHHHHHHHHHT----------TC--CTTTSEEEEGGGCTH---HHHHHHHHGGGCBHHHH
T ss_pred CCC----------HHHHHHHHHHHHHHHHHc----------CC--CccceEEEECCcchh---HHHHHHHHhccCcHHHH
Confidence 994 678888887655554332 11 378899999999986 78999999999999987
Q ss_pred hhhc----------------------------------ccCccchhHHHhhcccchhcccc---------ce-----eee
Q psy14958 198 LKKQ----------------------------------SVGGSDQMGNIKAGHDLISKLYG---------KT-----VFD 229 (362)
Q Consensus 198 L~Rd----------------------------------~iGGsDQ~~NI~rGrdLi~r~~g---------qe-----Lp~ 229 (362)
...+ ..||+||+.|+..+|++++|... +. .|.
T Consensus 105 ~r~~~~K~~~~~~~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~ 184 (322)
T 3tzl_A 105 ERAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAV 184 (322)
T ss_dssp HSCHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCC
T ss_pred HhhhHHHHHHccCCCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhcccccc
Confidence 6542 14999999999999999986432 11 222
Q ss_pred ec------cCCCCceeeccCCCCCCcchhhHh
Q psy14958 230 LL------VRTPQTVYAGFDPTASSLHIGNLL 255 (362)
Q Consensus 230 LL------~sksl~~YiG~dpTa~~lHlGhlm 255 (362)
+. .|||.+++|.++++|+.+ ..+++
T Consensus 185 l~~l~G~KMSKS~~n~I~L~d~p~~i-~~KI~ 215 (322)
T 3tzl_A 185 VVGTDGAKMSKSYQNTIDIFSSEKTL-KKQIS 215 (322)
T ss_dssp CBCTTSSBCCGGGTCCCBSSCCHHHH-HHHHH
T ss_pred ccCCCCCcCCCCCCCceecCCCHHHH-HHHHH
Confidence 21 277888899999988665 44444
No 55
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=99.69 E-value=1.2e-17 Score=167.68 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=130.6
Q ss_pred HHHHHhcccCCCcceEEeeeCC------CcchhhhhhhhhhHhhhhcccccchhhhhhc-CCCccccchhhhhhhcccce
Q psy14958 33 LSPLLSRGSASTQGISRYKLSP------CGHLLAENIKKEWVRSCVLRREEPAFLYSQQ-GDCENETDLQDMFLTTKELS 105 (362)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~dp------~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 105 (362)
+.++++...+++|++++.|+|| +||+|.+. +++.||+. | |.+
T Consensus 89 ~~~ll~~~~~~~p~~vy~G~~PTg~~lHLGh~v~~~---------------~~~~lQ~~~g--~~~-------------- 137 (406)
T 3tze_A 89 FNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFL---------------LCKYMQDAFK--IRL-------------- 137 (406)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCCSSCCBGGGHHHHH---------------HHHHHHHHHT--CCE--------------
T ss_pred HHHHHHHHhcCCCeEEEEeeCCCCCcccHHHHHHHH---------------HHHHHHHhcC--CcE--------------
Confidence 3456666667899999999999 88999998 78889998 5 666
Q ss_pred eEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHH
Q psy14958 106 NGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDF 184 (362)
Q Consensus 106 ~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~df 184 (362)
+++|||.+|.+. |+ ++.|+|++|++.+.+|+..+ +| ++++.|++|++|.. .-+.++
T Consensus 138 ~i~IaD~~a~l~--------~~-~~~e~i~~~~~~~~~~~lA~GlD-------------p~k~~i~~qs~~~~-~~~~~~ 194 (406)
T 3tze_A 138 VIQITDDEKFLW--------KS-MRLEDAMAYGRENIKDIVTLGFD-------------PKLTYIFSNVEASH-HFEENI 194 (406)
T ss_dssp EEEECHHHHHHH--------SS-CCHHHHHHHHHHHHHHHHTTTCC-------------GGGEEEEEHHHHGG-GGHHHH
T ss_pred EEEeeChHHHcC--------CC-CCHHHHHHHHHHHHHHHHHcCCC-------------ccceEEEeccHhHH-HHHHHH
Confidence 566666665554 44 89999999999988887765 33 67899999999998 446666
Q ss_pred HHHHHhhhhhhhhhhhc------------------------------------ccCccchhHHHhhcccchhccccc---
Q psy14958 185 MNHIARLFRMGDMLKKQ------------------------------------SVGGSDQMGNIKAGHDLISKLYGK--- 225 (362)
Q Consensus 185 L~~lg~~f~v~~ML~Rd------------------------------------~iGGsDQ~~NI~rGrdLi~r~~gq--- 225 (362)
.+ +++++|+++|+++. ..||+||+.|+..+|+++++....
T Consensus 195 ~~-L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~ 273 (406)
T 3tze_A 195 LK-ISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKKPS 273 (406)
T ss_dssp HH-HHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCE
T ss_pred HH-HHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEeeccchHHHHHHHHHHHHHcCCCCce
Confidence 65 99999999999873 138999999999999999865322
Q ss_pred --e---eeeec-----cCCCC-ceeeccCCCCCCcchhhHhH
Q psy14958 226 --T---VFDLL-----VRTPQ-TVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 226 --e---Lp~LL-----~sksl-~~YiG~dpTa~~lHlGhlms 256 (362)
. ++.|- .|||. +++|.++++|+.+ ..++++
T Consensus 274 ~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I-~kKI~k 314 (406)
T 3tze_A 274 SIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTI-RKKIIA 314 (406)
T ss_dssp EEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHH-HHHHHH
T ss_pred eeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHH-HHHHHh
Confidence 1 22221 15676 6899999999887 777776
No 56
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=2.8e-17 Score=161.02 Aligned_cols=154 Identities=12% Similarity=0.036 Sum_probs=119.1
Q ss_pred eEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccC--
Q psy14958 47 ISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGD-- 118 (362)
Q Consensus 47 ~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGD-- 118 (362)
+++.|+|| +||++ ++. ++..||+.| .|++ +++|||+||+|||
T Consensus 3 ~vy~G~~PTg~lHlGh~~g~l~---------------~~~~lQ~~G-~~~~--------------~~~IaD~~a~~~~~~ 52 (337)
T 2el7_A 3 RVLSGIQPSGEIHIGNYLGAIK---------------QWVAIGEKL-GRDA--------------FFCIVDYHALTNPLA 52 (337)
T ss_dssp CEEEEECSCSCCBHHHHHTHHH---------------HHHHHHHHH-GGGE--------------EEEECGGGGGGSTTT
T ss_pred EEEEeeCCCCcccHHHHHHHHH---------------HHHHHHhcC-CCCE--------------EEEEeCceeecCCCC
Confidence 79999999 89988 666 788899875 2777 7999999999999
Q ss_pred CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhh
Q psy14958 119 PSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDML 198 (362)
Q Consensus 119 PSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML 198 (362)
|| .+++++|+..+..++..+- -++++++|++||+|.. ..++...+++++++++|.
T Consensus 53 ~~----------~~~i~~~~~~~~~~~la~G------------ldp~k~~i~~qS~~~~---~~el~~~l~~~~~~~~l~ 107 (337)
T 2el7_A 53 YD----------PSTLAQRTFEAALVNIAAG------------LDPEKVTLFVQSHVPE---HTELSWVFTTLTPLGDLT 107 (337)
T ss_dssp SC----------HHHHHHHHHHHHHHHHHHT------------CCTTTSEEEEGGGSTH---HHHHHHHHHHTSBHHHHH
T ss_pred CC----------HHHHHHHHHHHHHHHHHhC------------CChhheEEEEcCcchh---hHHHHHHHHccCCHHHHH
Confidence 65 6788888877766555431 1278899999999985 778888899999999977
Q ss_pred hhc----------------------------------ccCccchhHHHhhcccchhcc---ccce-------e----eee
Q psy14958 199 KKQ----------------------------------SVGGSDQMGNIKAGHDLISKL---YGKT-------V----FDL 230 (362)
Q Consensus 199 ~Rd----------------------------------~iGGsDQ~~NI~rGrdLi~r~---~gqe-------L----p~L 230 (362)
..+ ..||+||+.|+..||+++++. ++.. + |.+
T Consensus 108 r~~~~k~r~~~~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l 187 (337)
T 2el7_A 108 RMTQFKDKASKQETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRV 187 (337)
T ss_dssp TSHHHHHHTTSSSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCC
T ss_pred HhHHHHHHhccCCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccc
Confidence 664 159999999999999999864 2310 1 222
Q ss_pred c-------cCCCCceeeccCCCCCCcchhhHhH
Q psy14958 231 L-------VRTPQTVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 231 L-------~sksl~~YiG~dpTa~~lHlGhlms 256 (362)
. .|||.+++|.++++|.++ ..+++.
T Consensus 188 ~gldG~~KMSKS~~n~I~L~d~p~~i-~~Ki~~ 219 (337)
T 2el7_A 188 PGIDGKAKMSKSLGNTIGLLEPEESI-WQKIQH 219 (337)
T ss_dssp BCTTSSSBCCTTTTCCCBSSSCHHHH-HHHHHT
T ss_pred cCCCCccccCCCCCCeeeCcCCHHHH-HHHHHh
Confidence 1 268889999999998766 555544
No 57
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=99.67 E-value=6.7e-17 Score=159.06 Aligned_cols=118 Identities=12% Similarity=0.136 Sum_probs=91.2
Q ss_pred CCceeeccCCCCCCcchhhHh-HHHHHHHHHHcCCceEEeecchhHHhh--------------------c--CCCceEEE
Q psy14958 235 PQTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQVIALMICLSQILW--------------------R--TCNEEAVV 291 (362)
Q Consensus 235 sl~~YiG~dpTa~~lHlGhlm-sil~lr~fq~~G~~~i~lIg~i~~~l~--------------------~--~~~~~~Iv 291 (362)
...+|+|++||+ ++|+||++ .+..|.+||+ |++++++|||+|++.. - ++++++|+
T Consensus 4 ~~~i~sG~~PTG-~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if 81 (348)
T 2yy5_A 4 MKRALTGIQASG-KQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLF 81 (348)
T ss_dssp CCEEEEEECCCT-TCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred CeEEEEeeCCCC-cccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEE
Confidence 468999999998 89999988 5689999999 9999999999774331 1 36789999
Q ss_pred echhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhc-------CCCCcchhhhhhhHhHHhHHHHhhhcCceec
Q psy14958 292 NNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLES-------EHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361 (362)
Q Consensus 292 ~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~-------~~gis~~Ef~YpllQayDf~~L~~~~~~~~Q 361 (362)
.+|+|.....+ .+. ++..++++++-+...++.+... ++++++++|+||+|||+|+++ |+|.+|
T Consensus 82 ~qS~~~~~~el--~w~-l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~----~~a~~v 151 (348)
T 2yy5_A 82 LQSDLLEHSMM--GYL-MMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILL----YQPDIV 151 (348)
T ss_dssp EGGGCHHHHHH--HHH-HHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHT----TCCSEE
T ss_pred ECCcccchhHH--HHH-HHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHH----hCccEE
Confidence 99999862222 222 4567888887776788877642 357999999999999999988 566664
No 58
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.66 E-value=3.8e-17 Score=160.98 Aligned_cols=156 Identities=10% Similarity=0.084 Sum_probs=122.7
Q ss_pred CCcceEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccc
Q psy14958 43 STQGISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQV 116 (362)
Q Consensus 43 ~~~~~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~I 116 (362)
+++.+++.|||| +||++ ++. ++..||+. |.+ +++|||+||++
T Consensus 20 ~~~~~vysG~~PTG~lHLGn~~g~l~---------------~~~~lQ~~---~~~--------------~~~IaD~ha~~ 67 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQ---------------NRVRLQDE---AEL--------------FVLLADVQALT 67 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHH---------------HHHHHTSS---SEE--------------EEEECHHHHHH
T ss_pred CCCcEEEEeeCCCCCccHHHHHHHHH---------------HHHHHHHh---CCe--------------EEEEecchhhc
Confidence 568999999999 89988 555 67778875 677 79999999999
Q ss_pred cCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhh
Q psy14958 117 GDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGD 196 (362)
Q Consensus 117 GDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ 196 (362)
||| ++.|++++|+..+..++..+- -++++++|++||+|.. ..++...+++++++++
T Consensus 68 ~~~---------~~~e~i~~~~~~~~~~~la~G------------ldp~k~~i~~qS~~~~---~~el~~~l~~~~~v~~ 123 (351)
T 1yi8_B 68 DHF---------DRPEQVRENVLAVALDYLAAG------------LDPQKTTCVVQSAVPE---LAELTVYFLNLVTVSH 123 (351)
T ss_dssp HHT---------TCHHHHHHHHHHHHHHHHHHT------------CCTTTEEEEEGGGCTH---HHHHHHHHHTTSBHHH
T ss_pred CCC---------CCHHHHHHHHHHHHHHHHHhC------------CChhhcEEEEcCchhh---HHHHHHHHhccCCHHH
Confidence 996 789999999998877765531 1278899999999986 7899999999999999
Q ss_pred hhhhc-------------------------------------ccCccchhHHHhhcccchhcc---ccc----------e
Q psy14958 197 MLKKQ-------------------------------------SVGGSDQMGNIKAGHDLISKL---YGK----------T 226 (362)
Q Consensus 197 ML~Rd-------------------------------------~iGGsDQ~~NI~rGrdLi~r~---~gq----------e 226 (362)
|..+. ..||+||+.|+..||++++|. +|+ .
T Consensus 124 l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~ 203 (351)
T 1yi8_B 124 LRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSR 203 (351)
T ss_dssp HHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECS
T ss_pred HHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeec
Confidence 87421 159999999999999999863 221 0
Q ss_pred eeeec-------cCCCCceeeccCCCCCCcchhhHh
Q psy14958 227 VFDLL-------VRTPQTVYAGFDPTASSLHIGNLL 255 (362)
Q Consensus 227 Lp~LL-------~sksl~~YiG~dpTa~~lHlGhlm 255 (362)
.|.+. .|||.+++|.++++|+++ ..+++
T Consensus 204 ~~~l~~ldG~~KMSKS~~n~I~L~d~p~~i-~~Ki~ 238 (351)
T 1yi8_B 204 VPRLPGLDGQAKMSKSLGNAIALGDSADEV-ARKVM 238 (351)
T ss_dssp SCSCCCTTSSSCCCTTTTCCCBTTCCHHHH-HHHHH
T ss_pred CccccCCCCccccCCCCCCeecCCCCHHHH-HHHHH
Confidence 12221 267888999999998766 55554
No 59
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=99.65 E-value=6e-17 Score=161.63 Aligned_cols=168 Identities=10% Similarity=0.017 Sum_probs=131.1
Q ss_pred HHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEE
Q psy14958 35 PLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKI 109 (362)
Q Consensus 35 ~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lI 109 (362)
++++...+++|++++.|+|| +||+|.++ +++.||+.+ |+.+ +++
T Consensus 72 ~ll~~~~~~~~~~vysG~~PTG~lHLGh~v~~~---------------~~~~lQ~~~-g~~v--------------~i~- 120 (386)
T 3hzr_A 72 KFLDDVEAKKPTFIFIQKYPQKEVALEEYITLE---------------FARYLQDAF-NIQV--------------IIQ- 120 (386)
T ss_dssp HHHHHHHTTCCEEEEEEECCCSSCBGGGHHHHH---------------HHHHHHHHH-CCEE--------------EEE-
T ss_pred HHHHHHhcCCCeEEEeccCCCCCccHHHHHHHH---------------HHHHHHHhc-CCeE--------------EEE-
Confidence 55666667999999999999 89999998 678899973 1555 344
Q ss_pred cCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHH
Q psy14958 110 GGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHI 188 (362)
Q Consensus 110 Gg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~l 188 (362)
|||+. +..+|+ ++.|+|++|+..+.+++..+ +| ++++.|++||+|.. ++..++.++
T Consensus 121 ------I~D~~-a~~~r~-~~~e~i~~~~~~~~~~~lA~GlD-------------p~kt~i~~qS~~~~--~~~~~~~~l 177 (386)
T 3hzr_A 121 ------ILDDI-KVLNRE-ATINEASKMSNDLMKYILAFGFN-------------EDKTFIYTDYQYFG--KMYRTISLV 177 (386)
T ss_dssp ------ECHHH-HHHTTS-CCHHHHHHHHHHHHHHHHHTCCC-------------GGGEEEEEHHHHHH--HHHHHHHHH
T ss_pred ------eCchH-HhhcCC-CCHHHHHHHHHHHHHHHHHcCCC-------------CcceEEEeccHHHH--HHHHHHHHH
Confidence 66653 667898 99999999999666655544 33 67899999999998 777888889
Q ss_pred Hhhhhhhhhhhhc--------------------cc-----------------CccchhHHHhhcccchhccccce-----
Q psy14958 189 ARLFRMGDMLKKQ--------------------SV-----------------GGSDQMGNIKAGHDLISKLYGKT----- 226 (362)
Q Consensus 189 g~~f~v~~ML~Rd--------------------~i-----------------GGsDQ~~NI~rGrdLi~r~~gqe----- 226 (362)
++++++++|.++. ++ +|.||+.|+..+|+++++....+
T Consensus 178 ~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~ 257 (386)
T 3hzr_A 178 EKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLF 257 (386)
T ss_dssp HHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred HhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccccccchHHHHHHHHHHHHHcCCCCceEee
Confidence 9999999999873 11 29999999999999998643221
Q ss_pred ---eeeec----cCCC-CceeeccCCCCCCcchhhHhHH
Q psy14958 227 ---VFDLL----VRTP-QTVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 227 ---Lp~LL----~sks-l~~YiG~dpTa~~lHlGhlmsi 257 (362)
++.|- .||| .++||+++++|+++ ..+++++
T Consensus 258 ~~~l~gLdG~~KMSKSd~~~~I~L~D~p~~i-~kKI~k~ 295 (386)
T 3hzr_A 258 HKMVPLLSGVTKFDIPSDHNSILLSDNAKQV-ERKINKL 295 (386)
T ss_dssp ECCCCCTTCTTCCCCCCTTTSCBTTCCHHHH-HHHHHHT
T ss_pred cCeeeCCCCCCccCcCCCCCeeecCCCHHHH-HHHHHHh
Confidence 22221 2678 89999999999888 8888774
No 60
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=99.64 E-value=4.1e-16 Score=154.74 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=130.3
Q ss_pred cCCHHHHHHHHHhhhhhhhhhhhcccCccchhHHHhhcccchhccccceeeeeccCCCCceeeccCCCCCCcchhhHhHH
Q psy14958 178 SINVIDFMNHIARLFRMGDMLKKQSVGGSDQMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 178 ~m~~~dfL~~lg~~f~v~~ML~Rd~iGGsDQ~~NI~rGrdLi~r~~gqeLp~LL~sksl~~YiG~dpTa~~lHlGhlmsi 257 (362)
..++..+++.+|.. .+...|.+..+-|...+..+.||..+-||.+..-+..+.+++++.+|.|+.||+. +|+||++++
T Consensus 14 ~~dy~kl~~~fg~~-~i~~~l~~~~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~~PTG~-lHLGhyv~~ 91 (372)
T 3a04_A 14 IKDYDRLLRTFGIR-PFSEVLPLLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTGFMPSGK-FHFGHKLTV 91 (372)
T ss_dssp TTTTHHHHHTTTCE-EGGGGHHHHHHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEECCCSC-CBHHHHHHH
T ss_pred CcCHHHHHHHhCCC-CcchHHHHHHhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEeCcCCCcH-hHHHHHHHH
Confidence 46788888887754 4456677777788888889999999998766554544456789999999999995 999999999
Q ss_pred HHHHHHHHcCCceEEeecchhHHhh------------------------cCCCceEEEechhhhcCCCHHHHHHHHHhhc
Q psy14958 258 INLIHWQRAGHQVIALMICLSQILW------------------------RTCNEEAVVNNMSWYNSINVIDFMNHIARLF 313 (362)
Q Consensus 258 l~lr~fq~~G~~~i~lIg~i~~~l~------------------------~~~~~~~Iv~NsdW~~~~~~~dfL~~vgk~~ 313 (362)
++++++|..|+.+++.|+|+|++.. -++++++|+.+|+|... +.+....+++.+
T Consensus 92 ~~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~~--~~~l~~~~~~~~ 169 (372)
T 3a04_A 92 DQLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTP--YFRLIQLFSGKV 169 (372)
T ss_dssp HHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCHH--HHHHHHHHTTSS
T ss_pred HHHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccchHH--HHHHHHHHHhhh
Confidence 9999999999999999999875432 03779999999997543 344555578888
Q ss_pred cHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHhhh
Q psy14958 314 RMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKE 355 (362)
Q Consensus 314 tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~~~ 355 (362)
++++|-+ .. ..++.+.|.||+|||+|++++..+
T Consensus 170 ~~~~~~~-------~~--~~~~~~~~~yP~lqAaDil~~~~d 202 (372)
T 3a04_A 170 TAAEMEA-------IY--GELTPAKMMASLTQAADILHVQLD 202 (372)
T ss_dssp CHHHHHH-------HH--SSCCHHHHHHHHHHHHHHHGGGSG
T ss_pred hHHHHhh-------hh--hccCcccccCCcchhHHHhhhcCc
Confidence 9988843 22 246889999999999999987654
No 61
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=99.61 E-value=7.4e-16 Score=153.86 Aligned_cols=115 Identities=10% Similarity=0.129 Sum_probs=84.3
Q ss_pred CCCc----eeeccCCCCCCcchhhHhHHH-HHHHHHHcCCceEEeecchhHHhh--------------------c--CCC
Q psy14958 234 TPQT----VYAGFDPTASSLHIGNLLILI-NLIHWQRAGHQVIALMICLSQILW--------------------R--TCN 286 (362)
Q Consensus 234 ksl~----~YiG~dpTa~~lHlGhlmsil-~lr~fq~~G~~~i~lIg~i~~~l~--------------------~--~~~ 286 (362)
+++. +|.|++||++ +|+||+++.+ .|+++|+ |++++++|+|+|++.. - +++
T Consensus 30 ~p~~m~~ri~sG~~PTG~-lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~ 107 (388)
T 3prh_A 30 DPFTMKQTIFSGIQPSGS-VTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPE 107 (388)
T ss_dssp -----CCEEEEEECCCSC-CBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCcccCCeEEEeeCCCCc-chHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 4666 9999999997 9999999765 5999998 9999999999874321 1 377
Q ss_pred ceEEEechhhhcCCCHHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHh
Q psy14958 287 EEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLY 353 (362)
Q Consensus 287 ~~~Iv~NsdW~~~~~~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~ 353 (362)
+++|+.||+|.... ...+. ++..+|++++-+...|+.+.+..+++++++|+||+|||+|++++.
T Consensus 108 kt~if~qS~v~~~~--el~w~-l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQAADIl~~~ 171 (388)
T 3prh_A 108 KATLFIQSEVPAHA--QAGWM-MQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLMAADILLYG 171 (388)
T ss_dssp TEEEEEGGGSTHHH--HHHHH-HHTTSCHHHHHTTC----------CCBHHHHSCHHHHHHHHHTTT
T ss_pred HeEEEecccccchH--HHHHH-HHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHHHHHHHHHhC
Confidence 99999999997532 23343 678999999888789998887657899999999999999999853
No 62
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=99.61 E-value=1.7e-16 Score=156.05 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=93.3
Q ss_pred CceeeccCCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecchhHHhh--------------------c--CCCceEEEe
Q psy14958 236 QTVYAGFDPTASSLHIGNLLIL-INLIHWQRAGHQVIALMICLSQILW--------------------R--TCNEEAVVN 292 (362)
Q Consensus 236 l~~YiG~dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~i~~~l~--------------------~--~~~~~~Iv~ 292 (362)
..+|.|++||++ +|+||+++. .+|++||+ +++++++|+|+|++.. - ++++++|+.
T Consensus 7 ~~v~sG~~PTG~-lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~ 84 (341)
T 3sz3_A 7 PIVLSGVQPSGE-LSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFV 84 (341)
T ss_dssp CEEEEEECSSSC-CBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred CEEEeCcCCCCc-ccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEe
Confidence 479999999996 999999964 68999999 6999999999874331 1 377999999
Q ss_pred chhhhcCCC-HHHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHh
Q psy14958 293 NMSWYNSIN-VIDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLY 353 (362)
Q Consensus 293 NsdW~~~~~-~~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~ 353 (362)
||+|..... +|-+.+ ++...+++||.+..++..|.+ +++++++|+||+|||+|++++.
T Consensus 85 qS~v~~~~el~~~l~~-~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaaDil~~~ 143 (341)
T 3sz3_A 85 QSHVPEHAQLGWVLNC-YTQMGELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAADILLYG 143 (341)
T ss_dssp GGGCTHHHHHHHHHHT-TSCHHHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHHHHHTTT
T ss_pred ccchhhhHHHHHHHHh-hccHHHHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHHHHHHcC
Confidence 999975443 345555 888899999998888887875 4689999999999999999864
No 63
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.60 E-value=2.7e-16 Score=154.32 Aligned_cols=153 Identities=12% Similarity=0.079 Sum_probs=119.2
Q ss_pred cceEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCcccccc-
Q psy14958 45 QGISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVG- 117 (362)
Q Consensus 45 ~~~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IG- 117 (362)
..+++.|+|| +||++ +++ ++..||+.| |++ +++|||+||++|
T Consensus 12 ~~~v~~G~~PTG~lHLGn~~g~l~---------------~~~~lQ~~G--~~~--------------~~~IaD~ha~t~~ 60 (340)
T 2g36_A 12 HMRILSGMRPTGKLHIGHLVGALE---------------NWVKLQEEG--NEC--------------FYFVADWHALTTH 60 (340)
T ss_dssp CCEEEEEECCCSSCBHHHHHTHHH---------------HHHHHHHTT--CEE--------------EEEECHHHHHHHH
T ss_pred CCeEEEeeCCCCcccHHhHHHHHH---------------HHHHHHHCC--CCE--------------EEEEecceeecCC
Confidence 4789999999 89988 666 889999999 998 799999999998
Q ss_pred --CCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhh
Q psy14958 118 --DPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMG 195 (362)
Q Consensus 118 --DPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~ 195 (362)
||+ ..++.+.+|++.|.. .-+ +|++++|++||+|.. ..+++..++++++++
T Consensus 61 ~~dp~--------~~~~~~~~~~~~~lA---~Gl-------------dp~k~~if~qS~~~~---~~el~~~l~~~~~v~ 113 (340)
T 2g36_A 61 YDDVS--------KLKEYTRDLVRGFLA---CGI-------------DPEKSVIFVQSGVKE---HAELALLFSMIVSVS 113 (340)
T ss_dssp TTCCT--------THHHHHHHHHHHHHH---TTC-------------CTTTSEEEEGGGCTH---HHHHHHHHHTTSCHH
T ss_pred CCCHH--------HHHHHHHHHHHHHHH---hCC-------------ChhHeEEEECCchHH---HHHHHHHHHccCCHH
Confidence 887 466777888877554 111 278899999999976 889999999999999
Q ss_pred hhhhhc-------------------------------------ccCccchhHHHhhcccchhccc---cc----------
Q psy14958 196 DMLKKQ-------------------------------------SVGGSDQMGNIKAGHDLISKLY---GK---------- 225 (362)
Q Consensus 196 ~ML~Rd-------------------------------------~iGGsDQ~~NI~rGrdLi~r~~---gq---------- 225 (362)
+|...+ ..||+||+.|+..+|+++++.. ++
T Consensus 114 ~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~ 193 (340)
T 2g36_A 114 RLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILS 193 (340)
T ss_dssp HHHTCHHHHTC-------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEEC
T ss_pred HHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhc
Confidence 976542 1499999999999999998642 21
Q ss_pred eeeeec------cCCCCceeeccCCCCCCcchhhHhH
Q psy14958 226 TVFDLL------VRTPQTVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 226 eLp~LL------~sksl~~YiG~dpTa~~lHlGhlms 256 (362)
+.|.+. .|||.+++|.+++||+++ ..+++.
T Consensus 194 ~~~~l~gldG~KMSKS~~n~I~L~dsp~~i-~~Ki~~ 229 (340)
T 2g36_A 194 RVPKLPGTDGRKMSKSYGNIINLEISEKEL-EQTILR 229 (340)
T ss_dssp CSCCCCCTTSSCCCGGGTCCCBTTCCHHHH-HHHHHT
T ss_pred cccccCCCCccccCCCCCCeEeeeCCHHHH-HHHHHh
Confidence 012221 277888999999988766 545443
No 64
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=99.58 E-value=3.9e-16 Score=153.79 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=92.1
Q ss_pred CCceeeccCCCCCCcchhhHhH-HHHHHHHHHcCCceEEeecchhHHhh--------------------c--CCCceEEE
Q psy14958 235 PQTVYAGFDPTASSLHIGNLLI-LINLIHWQRAGHQVIALMICLSQILW--------------------R--TCNEEAVV 291 (362)
Q Consensus 235 sl~~YiG~dpTa~~lHlGhlms-il~lr~fq~~G~~~i~lIg~i~~~l~--------------------~--~~~~~~Iv 291 (362)
...+|.|++||++ +|+||+++ +.+|+++|+ +++++++|+|+|++.+ - ++++++|+
T Consensus 15 ~~~i~sG~~PTG~-lHLGh~vg~l~~~~~lQ~-~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 15 KPIVFSGAQPSGE-LTIGNYMGALRQWVQMQD-DYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp CCEEEEEECSCSC-CBHHHHHHTHHHHHTTTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred CCEEEECcCCCCc-ccHHHHHHHHHHHHHHHh-hCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 4689999999997 99999995 578888998 6999999999875431 0 36789999
Q ss_pred echhhhcCCCH-HHHHHHHHhhccHHHHHchhHHHhhhhcCCCCcchhhhhhhHhHHhHHHHh
Q psy14958 292 NNMSWYNSINV-IDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLY 353 (362)
Q Consensus 292 ~NsdW~~~~~~-~dfL~~vgk~~tl~~mL~rd~~~~Rl~~~~gis~~Ef~YpllQayDf~~L~ 353 (362)
.||+|.....+ |-+.+ ++...+++||.+..+...|.. +++++++|+||+|||+|++++.
T Consensus 93 ~qS~v~~~~el~~~l~~-~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQAaDil~~~ 152 (346)
T 3n9i_A 93 VQSHVPEHSQLSWALNC-YTYFGELSRMTQFKDKSARYA--ENINAGLFDYPVLMAADILLYQ 152 (346)
T ss_dssp EGGGCTHHHHHHHHHHT-TSBHHHHHTCHHHHHHHHHSG--GGCBHHHHHHHHHHHHHHHTTT
T ss_pred eccccccchHHHHHHHH-HhhHHHHHHHHHHHHHHhccC--CCCCchhHHhHHHHHHHHHHhC
Confidence 99999865543 44555 788888999988766666654 4589999999999999999863
No 65
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=99.49 E-value=1.2e-14 Score=141.96 Aligned_cols=155 Identities=12% Similarity=0.026 Sum_probs=114.9
Q ss_pred eEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCCC
Q psy14958 47 ISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPS 120 (362)
Q Consensus 47 ~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDPS 120 (362)
+++.|+|| +||++ ++. ++..+|+ | |.+ +++|||+||++| |
T Consensus 3 ~vysG~~PTG~lHlGn~vg~l~---------------~~~~lQ~-g--~~~--------------~~~IaD~ha~~~-~- 48 (328)
T 1i6k_A 3 TIFSGIQPSGVITIGNYIGALR---------------QFVELQH-E--YNC--------------YFCIVDQHAITV-W- 48 (328)
T ss_dssp EEEEEECCCSCCBHHHHHHTHH---------------HHHHHTT-T--SEE--------------EEEECHHHHTTS-C-
T ss_pred EEEEeeCCCCcccHHHHHHHHH---------------HHHHHHc-C--CcE--------------EEEEeCceeecC-C-
Confidence 79999999 89988 665 7778888 7 998 899999999999 7
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhhhh
Q psy14958 121 GKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKK 200 (362)
Q Consensus 121 Gr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML~R 200 (362)
++.|++++|+..+.+++..+- -++++++|+.||+|...-.+.=.+..+++..++++|...
T Consensus 49 --------~~~e~i~~~~~~~~~~~la~G------------ldp~k~~if~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~ 108 (328)
T 1i6k_A 49 --------QDPHELRQNIRRLAALYLAVG------------IDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQF 108 (328)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHTT------------CCTTTEEEEEGGGCTHHHHHHHHHHHHSCHHHHHTCHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHHhC------------CChhhcEEEecCchhhhhHHHHHHhccccHHHHHHHHHH
Confidence 588999999998877755431 127889999999996533333335557788888888761
Q ss_pred -------c------------------------ccCccchhHHHhhcccchhcccc-------ce----------eeeec-
Q psy14958 201 -------Q------------------------SVGGSDQMGNIKAGHDLISKLYG-------KT----------VFDLL- 231 (362)
Q Consensus 201 -------d------------------------~iGGsDQ~~NI~rGrdLi~r~~g-------qe----------Lp~LL- 231 (362)
+ ..||+||+.|+..+|+++++... .. ++.+-
T Consensus 109 k~~~~~~~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G 188 (328)
T 1i6k_A 109 KEKSAGKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVD 188 (328)
T ss_dssp HHHHTTCSSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSC
T ss_pred HHHHhccCCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCC
Confidence 1 25999999999999999886421 11 11221
Q ss_pred ----cCCCCce-e--eccCCCCCCcchhhHhH
Q psy14958 232 ----VRTPQTV-Y--AGFDPTASSLHIGNLLI 256 (362)
Q Consensus 232 ----~sksl~~-Y--iG~dpTa~~lHlGhlms 256 (362)
.|||.++ + |.++++|+++ ..+++.
T Consensus 189 ~~~KMSKS~~n~~~~I~L~d~~~~i-~~KI~~ 219 (328)
T 1i6k_A 189 PTKKMSKSDPNPKAYITLLDDAKTI-EKKIKS 219 (328)
T ss_dssp TTSBCCTTCSCGGGCCBTTCCHHHH-HHHHHH
T ss_pred CccCCCCCCCCcCceeeecCCHHHH-HHHHHh
Confidence 2678888 7 9999987655 555544
No 66
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=99.38 E-value=1.8e-13 Score=134.67 Aligned_cols=157 Identities=10% Similarity=0.064 Sum_probs=111.2
Q ss_pred CcceEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCcccccc
Q psy14958 44 TQGISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVG 117 (362)
Q Consensus 44 ~~~~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IG 117 (362)
++.+++.|+|| +||++ ++. +...||+ | |++ +++|||+||+++
T Consensus 3 ~~~~i~sG~~PTG~lHLGn~vg~l~---------------~~~~lQ~-~--~~~--------------~~~IaD~ha~~~ 50 (348)
T 2yy5_A 3 MMKRALTGIQASGKQHLGNYLGVMQ---------------SLIELQE-Q--CQL--------------FVFVADLHSITV 50 (348)
T ss_dssp -CCEEEEEECCCTTCBHHHHHHTGG---------------GHHHHHH-H--SEE--------------EEEECHHHHTTS
T ss_pred CCeEEEEeeCCCCcccHHHHHHHHH---------------HHHHHHh-C--CcE--------------EEEEcChhhccC
Confidence 45799999999 89988 666 8888998 7 888 899999999998
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhh
Q psy14958 118 DPSGKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGD 196 (362)
Q Consensus 118 DPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ 196 (362)
+ .+.+++.+|+..+.+..... +| +++++|+.||+|...-.+.=.+..+++..++++
T Consensus 51 ~----------~d~~~i~~~~~~~~~~~lA~Gld-------------p~k~~if~qS~~~~~~el~w~l~~~~~~~~l~R 107 (348)
T 2yy5_A 51 D----------FQPQALKQNNFDLVRTLLAVGLD-------------PQKACLFLQSDLLEHSMMGYLMMVQSNLGELQR 107 (348)
T ss_dssp C----------CCHHHHHHHHHHHHHHHHHTTCC-------------TTTEEEEEGGGCHHHHHHHHHHHHHSBHHHHHH
T ss_pred C----------CCHHHHHHHHHHHHHHHHHhCCC-------------hhHeEEEECCcccchhHHHHHHHhhccHHHHhc
Confidence 6 56789999987776665554 33 788999999999863222222333455555555
Q ss_pred hhh--------------hc------------------------ccCccchhHHHhhcccchhccc---c----ce-----
Q psy14958 197 MLK--------------KQ------------------------SVGGSDQMGNIKAGHDLISKLY---G----KT----- 226 (362)
Q Consensus 197 ML~--------------Rd------------------------~iGGsDQ~~NI~rGrdLi~r~~---g----qe----- 226 (362)
|.. .+ ..||.||+.|+..+|++.++.. + ..
T Consensus 108 ~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~ 187 (348)
T 2yy5_A 108 MTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQN 187 (348)
T ss_dssp CHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECC
T ss_pred hHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecc
Confidence 543 12 1499999999999999988642 2 11
Q ss_pred -----eeeec-----cCCCCce---eeccCCCCCCcchhhHhH
Q psy14958 227 -----VFDLL-----VRTPQTV---YAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 227 -----Lp~LL-----~sksl~~---YiG~dpTa~~lHlGhlms 256 (362)
+|.|- .|||.++ +|.++++|+++ ..+++.
T Consensus 188 ~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i-~~KI~~ 229 (348)
T 2yy5_A 188 KDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVV-VKKIRQ 229 (348)
T ss_dssp TTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHH-HHHHHT
T ss_pred cccccccCCCCcchhcCCCCCCCCceEeecCCHHHH-HHHHHh
Confidence 12221 2678888 99999986555 444443
No 67
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=99.29 E-value=1e-12 Score=129.18 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=115.9
Q ss_pred ceEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccCC
Q psy14958 46 GISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDP 119 (362)
Q Consensus 46 ~~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGDP 119 (362)
-+|+.|++| +||.+ +++ |+..||+ + |++ +++|+|.+|+++ |
T Consensus 7 ~~v~sG~~PTG~lHLGhy~g~l~---------------~~~~lQ~-~--~~~--------------~~~iaD~ha~~~-~ 53 (341)
T 3sz3_A 7 PIVLSGVQPSGELSIGNYLGALR---------------QWQQMQD-D--YDC--------------QYCVVDLHAITV-R 53 (341)
T ss_dssp CEEEEEECSSSCCBHHHHHHTGG---------------GHHHHHH-H--SEE--------------EEEECHHHHTTS-C
T ss_pred CEEEeCcCCCCcccHHHHHHHHH---------------HHHHHHh-c--CeE--------------EEEEecceeEcC-C
Confidence 489999999 89988 666 8889998 5 777 799999999998 5
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhc--cCCHHHHHHHHHhhhhhhhh
Q psy14958 120 SGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYN--SINVIDFMNHIARLFRMGDM 197 (362)
Q Consensus 120 SGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~--~m~~~dfL~~lg~~f~v~~M 197 (362)
.+.+++.+|+..+..++..+- =+|++++|+.||+|.. ++... +.. +++..++++|
T Consensus 54 ---------~~~~~~~~~~~~~~~~~lA~G------------lDp~k~~i~~qS~v~~~~el~~~-l~~-~~~~~~l~R~ 110 (341)
T 3sz3_A 54 ---------QDPQALHEATLDALAICLAVG------------VDPKKSTLFVQSHVPEHAQLGWV-LNC-YTQMGELSRM 110 (341)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHTT------------CCTTTSEEEEGGGCTHHHHHHHH-HHT-TSCHHHHHTC
T ss_pred ---------CCHHHHHHHHHHHHHHHHHcC------------CChhhcEEEeccchhhhHHHHHH-HHh-hccHHHHHHH
Confidence 477899999987666555431 1278999999999974 33343 444 8889999999
Q ss_pred hhhc--------------------------------ccCccchhHHHhhcccchhcc---cc---c--------------
Q psy14958 198 LKKQ--------------------------------SVGGSDQMGNIKAGHDLISKL---YG---K-------------- 225 (362)
Q Consensus 198 L~Rd--------------------------------~iGGsDQ~~NI~rGrdLi~r~---~g---q-------------- 225 (362)
.+.. ..||.||+.++..+|++.++. ++ +
T Consensus 111 ~~~k~~~~~~~~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~ 190 (341)
T 3sz3_A 111 TQFKDKSARYANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNA 190 (341)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCC
T ss_pred HHHHHHHhhccCCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcc
Confidence 8663 149999999999999998864 23 1
Q ss_pred eeeeec-----cCCCC---ceeeccCCCCCCcchhhHhH
Q psy14958 226 TVFDLL-----VRTPQ---TVYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 226 eLp~LL-----~sksl---~~YiG~dpTa~~lHlGhlms 256 (362)
.+|.|. .|||. +++|.++++++.+ ..+++.
T Consensus 191 ~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i-~kKI~~ 228 (341)
T 3sz3_A 191 RVMSLQDATKKMSKSDDNRKNVITLLEDPKSI-IKKINK 228 (341)
T ss_dssp CCEETTEEEEECCTTCSCGGGCCBTTCCHHHH-HHHHHT
T ss_pred cccCCCCCCCccCCCCCCCCCeeecCCCHHHH-HHHhhh
Confidence 122331 27777 7999999988766 555554
No 68
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=99.14 E-value=2.8e-11 Score=120.89 Aligned_cols=165 Identities=12% Similarity=0.064 Sum_probs=105.8
Q ss_pred HHHHhcccCC-Ccce----EEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcc
Q psy14958 34 SPLLSRGSAS-TQGI----SRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTK 102 (362)
Q Consensus 34 ~~~~~~~~~~-~~~~----~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 102 (362)
..+++...+| +|+. |+.|++| +||.+ +++ ++..+|+ | |++
T Consensus 19 d~il~~~e~g~~p~~m~~ri~sG~~PTG~lHLGhyvGal~---------------~~~~LQ~-~--~~~----------- 69 (388)
T 3prh_A 19 DSTENLYFQGIDPFTMKQTIFSGIQPSGSVTLGNYIGAMK---------------QFVELQH-D--YNS----------- 69 (388)
T ss_dssp ----------------CCEEEEEECCCSCCBHHHHHHTHH---------------HHHHTTT-T--SEE-----------
T ss_pred HHHHHHHHcCCCCcccCCeEEEeeCCCCcchHHHHHHHHH---------------HHHHHHc-c--CcE-----------
Confidence 3455666678 8998 9999999 89988 555 6788887 6 888
Q ss_pred cceeEEEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHH
Q psy14958 103 ELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVI 182 (362)
Q Consensus 103 ~~~~~lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~ 182 (362)
+++|+|.+|+++ | .+.+++.+|+..+......+ + =+|++++|+.||+|... ..
T Consensus 70 ---~~~IaD~hAlt~-~---------~~~~~lr~~~~~~aa~~lA~----------G--lDp~kt~if~qS~v~~~--~e 122 (388)
T 3prh_A 70 ---YFCIVDQHAITV-P---------QDRLELRKNIRNLAALYLAV----------G--LDPEKATLFIQSEVPAH--AQ 122 (388)
T ss_dssp ---EEEECHHHHTTS-C---------CCHHHHHHHHHHHHHHHHHT----------T--CCTTTEEEEEGGGSTHH--HH
T ss_pred ---EEEEecceeeec-C---------CCHHHHHHHHHHHHHHHHHh----------C--CChhHeEEEecccccch--HH
Confidence 799999999997 5 36677777775433333221 1 13789999999999752 33
Q ss_pred HHHHHHHhhhhhhhhhhh-----------c------------------------ccCccchhHHHhhcccchhccc---c
Q psy14958 183 DFMNHIARLFRMGDMLKK-----------Q------------------------SVGGSDQMGNIKAGHDLISKLY---G 224 (362)
Q Consensus 183 dfL~~lg~~f~v~~ML~R-----------d------------------------~iGGsDQ~~NI~rGrdLi~r~~---g 224 (362)
.... ++...++++ |+| + ..||.||+.++..+|++.++.. +
T Consensus 123 l~w~-l~~~~~~~~-L~R~~~fk~k~~~~~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~rfn~~y~ 200 (388)
T 3prh_A 123 AGWM-MQCVAYIGE-LERMTQFKDKSKGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYN 200 (388)
T ss_dssp HHHH-HHTTSCHHH-HHTTC----------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHH-HHhhccHHH-HHhhhhHhHHhhccCCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHHHhCcccC
Confidence 3344 677888877 344 1 1499999999999999987542 1
Q ss_pred ce--------------eeeec-----cCCCC---ceeeccCCCCCCcchhhHhHH
Q psy14958 225 KT--------------VFDLL-----VRTPQ---TVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 225 qe--------------Lp~LL-----~sksl---~~YiG~dpTa~~lHlGhlmsi 257 (362)
.. ++.|- .|||. +++|.+.++++++ ..+++++
T Consensus 201 ~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I-~kKI~ka 254 (388)
T 3prh_A 201 DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQL-EKKIKSA 254 (388)
T ss_dssp SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHH-HHHHHTC
T ss_pred CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHH-HHHHhhc
Confidence 11 12221 26777 8999999888766 5555553
No 69
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=99.06 E-value=6e-11 Score=116.88 Aligned_cols=157 Identities=14% Similarity=0.040 Sum_probs=109.3
Q ss_pred cceEEeeeCC-----Ccchh-hhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeEEEcCccccccC
Q psy14958 45 QGISRYKLSP-----CGHLL-AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGD 118 (362)
Q Consensus 45 ~~~~~~g~dp-----~gh~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lIGg~Ta~IGD 118 (362)
.-+++.|++| +||.+ +++ |...+|+ + |++ +++|+|.+|++.
T Consensus 15 ~~~i~sG~~PTG~lHLGh~vg~l~---------------~~~~lQ~-~--~~~--------------~~~iaD~hA~t~- 61 (346)
T 3n9i_A 15 KPIVFSGAQPSGELTIGNYMGALR---------------QWVQMQD-D--YDC--------------IYCIVDLHAITA- 61 (346)
T ss_dssp CCEEEEEECSCSCCBHHHHHHTHH---------------HHHTTTT-T--SEE--------------EEEECHHHHTTS-
T ss_pred CCEEEECcCCCCcccHHHHHHHHH---------------HHHHHHh-h--CcE--------------EEEEecceeecC-
Confidence 4589999999 89988 565 6777887 4 777 799999999995
Q ss_pred CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHHHHHhhhhhhhhh
Q psy14958 119 PSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDML 198 (362)
Q Consensus 119 PSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~il~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~~lg~~f~v~~ML 198 (362)
| .+.+++.+|+..+...+..+- =++++++|+.||+|.....+.-++..+++..++++|.
T Consensus 62 ~---------~~~~~~~~~~~~~~~~~lA~G------------lDp~k~~if~qS~v~~~~el~~~l~~~~~~~~l~R~~ 120 (346)
T 3n9i_A 62 R---------QDPALLRKRTLDTLALYLACG------------IDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120 (346)
T ss_dssp C---------CCHHHHHHHHHHHHHHHHHHT------------CCTTTSEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCH
T ss_pred C---------CCHHHHHHHHHHHHHHHHHcC------------CCccceEEEeccccccchHHHHHHHHHhhHHHHHHHH
Confidence 3 234677777655443333221 1378999999999986444333344488899999998
Q ss_pred hhc--------------------------------ccCccchhHHHhhcccchhccc---cce--------------eee
Q psy14958 199 KKQ--------------------------------SVGGSDQMGNIKAGHDLISKLY---GKT--------------VFD 229 (362)
Q Consensus 199 ~Rd--------------------------------~iGGsDQ~~NI~rGrdLi~r~~---gqe--------------Lp~ 229 (362)
+.. ..||.||+.++..+|++.++.. ++. ++.
T Consensus 121 ~~k~~~~~~~~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~g 200 (346)
T 3n9i_A 121 QFKDKSARYAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMS 200 (346)
T ss_dssp HHHHHHHHSGGGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBC
T ss_pred HHHHHHhccCCCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCcc
Confidence 753 1499999999999999988642 111 223
Q ss_pred ec-----cCCCCc---eeeccCCCCCCcchhhHhH
Q psy14958 230 LL-----VRTPQT---VYAGFDPTASSLHIGNLLI 256 (362)
Q Consensus 230 LL-----~sksl~---~YiG~dpTa~~lHlGhlms 256 (362)
|. .|||.. ++|.++++++.+ ..+++.
T Consensus 201 L~dg~~KMSKS~~~~~~~I~L~D~p~~i-~kKI~k 234 (346)
T 3n9i_A 201 LQDPTKKMSKSDDNRNNVIELLEDPKSV-VKKIKR 234 (346)
T ss_dssp SSCTTSBCCTTCSCGGGCCBTTSCHHHH-HHHHHT
T ss_pred CCCCccccCCCCCCCCceecCCCCHHHH-HHHHHh
Confidence 31 256664 789888888766 445444
No 70
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=98.93 E-value=7.4e-10 Score=109.90 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=122.7
Q ss_pred HHHHHhcccCCCcceEEeeeCC-----CcchhhhhhhhhhHhhhhcccccchhhhhhcCCCccccchhhhhhhcccceeE
Q psy14958 33 LSPLLSRGSASTQGISRYKLSP-----CGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNG 107 (362)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~dp-----~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 107 (362)
+.++|++..+|+|++|+-|+.| +||.|++. |.+.+|+.| |.+ ++
T Consensus 58 ~d~il~~~e~gk~~~v~sG~~PTG~lHLGhyv~~~---------------~~~~lq~~~--~~~--------------~~ 106 (372)
T 3a04_A 58 FDKILEAKARGERVAVLTGFMPSGKFHFGHKLTVD---------------QLIYLQKNG--FKV--------------FV 106 (372)
T ss_dssp HHHHHHHHHTTCCCEEEEEECCCSCCBHHHHHHHH---------------HHHHHHHTT--CEE--------------EE
T ss_pred HHHHHHHHHcCCCCEEEeCcCCCcHhHHHHHHHHH---------------HHHHHHhCC--CeE--------------EE
Confidence 4467777788999999999999 89999988 899999988 998 79
Q ss_pred EEcCccccccCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-HhhhhhhhhcccCCCCCCcEEEeChhhhccCCHHHHHH
Q psy14958 108 KIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTI-FRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMN 186 (362)
Q Consensus 108 lIGg~Ta~IGDPSGr~~~R~~Lt~e~i~~Na~~i~~Qi~~i-l~n~~~~~~~~~~~~~~~~~i~nN~~Wl~~m~~~dfL~ 186 (362)
.|+|.+|...++ ..++|.++.|+..+..++..+ || |++++|..||+|...+ .+...
T Consensus 107 ~IaD~ha~t~~~--------~~~~e~~r~~~~~~~~~~lA~GlD-------------P~kt~if~qS~~~~~~--~~l~~ 163 (372)
T 3a04_A 107 AIADAEAFAVRR--------IGREEAVRIAVEEYIANMIALGLD-------------PKDTEFYFQTNRGTPY--FRLIQ 163 (372)
T ss_dssp EECHHHHHHTTC--------CCHHHHHHHHHHTTHHHHHHHTCC-------------TTTCEEEEGGGSCHHH--HHHHH
T ss_pred EEecchhhccCC--------CCCHHHHHHHHHHHHHHHHHcCCC-------------hHHcchhhhccchHHH--HHHHH
Confidence 999999986433 334567888887776666655 43 8899999999985432 34444
Q ss_pred HHHhhhhhhhhhhh-----------------c--------ccC--------ccchhHHHhhcccchhcccc---ce----
Q psy14958 187 HIARLFRMGDMLKK-----------------Q--------SVG--------GSDQMGNIKAGHDLISKLYG---KT---- 226 (362)
Q Consensus 187 ~lg~~f~v~~ML~R-----------------d--------~iG--------GsDQ~~NI~rGrdLi~r~~g---qe---- 226 (362)
.+.+..++++|=.. | ..| |.||..++...|++.+|..+ ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~ 243 (372)
T 3a04_A 164 LFSGKVTAAEMEAIYGELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPAS 243 (372)
T ss_dssp HHTTSSCHHHHHHHHSSCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEE
T ss_pred HHHhhhhHHHHhhhhhccCcccccCCcchhHHHhhhcCccccCccceecccchhhHHHHHHHHHHHHHhcCcccccChhh
Confidence 45666666665322 2 136 99999999999999876421 11
Q ss_pred -----eeeec---cCC-CCceeeccCCCCCCcchhhHhHH
Q psy14958 227 -----VFDLL---VRT-PQTVYAGFDPTASSLHIGNLLIL 257 (362)
Q Consensus 227 -----Lp~LL---~sk-sl~~YiG~dpTa~~lHlGhlmsi 257 (362)
+|.+- +|+ +.+++|.+.++|+.+ ..+++..
T Consensus 244 ~~~~~~pgldG~KmS~S~~ns~I~l~D~p~~i-~kKI~ka 282 (372)
T 3a04_A 244 TYHKLQPGLDGRKMSSSRPDSTIFLTDPPEVA-RNKLFRA 282 (372)
T ss_dssp EEECCCBCTTSSBCCTTSGGGSCBTTCCHHHH-HHHHHTC
T ss_pred hhhcccCCCCCCccCCCCCCcccccCCCHHHH-HHHHhcC
Confidence 12221 233 457799999999877 5666653
No 71
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=55.78 E-value=8.5 Score=40.20 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=30.1
Q ss_pred eeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe--ecc
Q psy14958 239 YAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL--MIC 276 (362)
Q Consensus 239 YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l--Ig~ 276 (362)
|+|-+|+.+ +|+||+-+. ..-|.++.+|++++-+ |||
T Consensus 149 ~~spN~~~p-lHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D 191 (607)
T 1f7u_A 149 FSSPNIAKP-FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGD 191 (607)
T ss_dssp CCCCBTTSC-CBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBC
T ss_pred ecCCCCCCC-CccchHHHHHHHHHHHHHHHHcCCCeeEEEeecC
Confidence 456678774 999999886 6889999999998776 577
No 72
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=55.49 E-value=7.3 Score=40.32 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=29.6
Q ss_pred eeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe--ecch
Q psy14958 239 YAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL--MICL 277 (362)
Q Consensus 239 YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l--Ig~i 277 (362)
|+|-.|++ .+|+||+-+. ..-|+++..|++++.+ |+|+
T Consensus 109 ~~spn~~~-~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 109 HTSVNPNK-ELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp CCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred eeCCCCCC-CCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 45556666 4999999886 7889999999998765 5663
No 73
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=55.41 E-value=8.5 Score=40.28 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=30.0
Q ss_pred eeccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe--ecch
Q psy14958 239 YAGFDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL--MICL 277 (362)
Q Consensus 239 YiG~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l--Ig~i 277 (362)
|+|-.|+. .+|+||+-+. ..-|+++..|++++.+ |+|+
T Consensus 125 ~~spN~~~-~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTK-PLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred eeCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 55667766 4999998886 7789999999998775 5663
No 74
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=53.48 E-value=11 Score=38.13 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=30.7
Q ss_pred CCCceee-ccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 234 TPQTVYA-GFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 234 ksl~~Yi-G~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
+..+.|+ |-.|.+ .+|+||+.+. ..-||++..|+++..+.|
T Consensus 24 ~~v~~YvcGPtvy~-~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n 69 (462)
T 3tqo_A 24 GKVKLYVCGMTVYD-YMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRN 69 (462)
T ss_dssp TEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CeEEEEeCCCcCCC-CCchhhhHHHHHHHHHHHHHHHcCCceEEecC
Confidence 3455664 555555 5999998886 778999999999877655
No 75
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=49.45 E-value=15 Score=36.19 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=28.6
Q ss_pred Cceee-ccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 236 QTVYA-GFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 236 l~~Yi-G~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
..+|+ |-.|.+ .+|+||+.+. ..-|+++..|+++..+.|
T Consensus 40 v~~y~~gPt~yg-~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~ 83 (414)
T 3c8z_A 40 ATMYVCGITPYD-ATHLGHAATYLTFDLVHRLWLDAGHTVQYVQN 83 (414)
T ss_dssp EEEEECCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEeCCCcCCC-CcCccccHHHHHHHHHHHHHHHcCCCEEeCCC
Confidence 34554 333334 5999998876 788999999999887765
No 76
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=45.49 E-value=16 Score=36.60 Aligned_cols=38 Identities=18% Similarity=-0.009 Sum_probs=28.2
Q ss_pred eeeccCCCC---CCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 238 VYAGFDPTA---SSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 238 ~YiG~dpTa---~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
-|++.+|-| ..+|+||+.+. ...|++...|+++..+.|
T Consensus 13 ~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g 57 (524)
T 2x1l_A 13 PFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTG 57 (524)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCC
Confidence 345555431 35999998886 788999999999877766
No 77
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=44.00 E-value=18 Score=36.35 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=26.3
Q ss_pred CCCCCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 244 PTASSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 244 pTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
+++ .+|+||+.+. ...||....|+++.-+-|-
T Consensus 20 ~nG-~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~ 55 (542)
T 3u1f_A 20 VNA-APHIGHVYSTLITDVIGRYHRVKGERVFALTGT 55 (542)
T ss_dssp CSS-CCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCC-chhhHHHHHHHHHHHHHHHHHhcCCCccccCcc
Confidence 445 5999998887 7889999999998777664
No 78
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=41.38 E-value=20 Score=36.20 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=28.6
Q ss_pred ceeeccCCCC---CCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 237 TVYAGFDPTA---SSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 237 ~~YiG~dpTa---~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
+.|+-. |+| ..+|+||+.+. ...|+++..|+++..+.|-
T Consensus 26 ~~~i~~-p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~ 71 (536)
T 4dlp_A 26 KYYITT-AIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGT 71 (536)
T ss_dssp EEEEEE-CCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CEEEeC-CCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCc
Confidence 456532 433 35999998886 6789999999998877663
No 79
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=40.05 E-value=22 Score=35.42 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=25.0
Q ss_pred CCCCCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 244 PTASSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 244 pTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
||+ .+|+||+.+. ...|++...|+.+.-+.|
T Consensus 16 ~ng-~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g 50 (497)
T 2csx_A 16 VND-VPHLGHAYTTIAADTIARYYRLRDYDVFFLTG 50 (497)
T ss_dssp TTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCC-ccchhhHHHHHHHHHHHHHHHhcCCceeeecc
Confidence 445 5999998876 778888899999877765
No 80
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=38.39 E-value=24 Score=35.77 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=27.1
Q ss_pred ccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 241 GFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 241 G~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
|-.||+ .+|+||+-+. +.-|++...|+.+..+.+
T Consensus 27 gPsPtG-~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~ 64 (523)
T 1irx_A 27 GITPSG-YVHVGNFRELFTAYIVGHALRDKGYEVRHIHM 64 (523)
T ss_dssp EECCSS-CCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCCCC-CcccCCcHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 788998 5999998876 566888889988776653
No 81
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=38.32 E-value=26 Score=34.80 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=24.3
Q ss_pred CCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 247 SSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 247 ~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
..+|+||+.+. ...|+++..|+++.-+.|
T Consensus 16 g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g 48 (500)
T 2d5b_A 16 AEPHLGHAYTTVVADFLARWHRLDGYRTFFLTG 48 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCCceeeecc
Confidence 46999998876 778899999999877766
No 82
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=37.71 E-value=24 Score=36.04 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=29.7
Q ss_pred CceeeccC---CCCCCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 236 QTVYAGFD---PTASSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 236 l~~YiG~d---pTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
.++|+-.- |++ .+|+||+.+. ...|++...|+++..+.|-
T Consensus 26 ~~~~i~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~ 72 (564)
T 3kfl_A 26 KVFFATTPIYYVNA-SPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGT 72 (564)
T ss_dssp CCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCEEEeCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 45665332 445 5999998876 6789999999998887764
No 83
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=37.27 E-value=26 Score=35.03 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=28.2
Q ss_pred CCceeeccCCCC-CCcchhhHhHH----HHHHHHHHcCCceEEee
Q psy14958 235 PQTVYAGFDPTA-SSLHIGNLLIL----INLIHWQRAGHQVIALM 274 (362)
Q Consensus 235 sl~~YiG~dpTa-~~lHlGhlmsi----l~lr~fq~~G~~~i~lI 274 (362)
..++|+- .||+ +.+|+||+-+. ..-|+++..|+++..+.
T Consensus 22 ~v~~yv~-gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~ 65 (461)
T 1li5_A 22 EVGMYVC-GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVR 65 (461)
T ss_dssp EEEEEEC-CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CeeEEEc-CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEee
Confidence 3456653 4552 35999998876 78889999999877663
No 84
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=31.54 E-value=36 Score=34.31 Aligned_cols=35 Identities=20% Similarity=0.070 Sum_probs=28.6
Q ss_pred cCCCCCCcchhhHhHH----HHHHHHHHcCCceEEe--ecch
Q psy14958 242 FDPTASSLHIGNLLIL----INLIHWQRAGHQVIAL--MICL 277 (362)
Q Consensus 242 ~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~l--Ig~i 277 (362)
-.||++ +|+||+-+. ...|.++..|++++-+ |||+
T Consensus 39 ~n~~~~-~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~ 79 (464)
T 3fnr_A 39 ANPTGP-LHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp CCSSSS-CBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CCCCCC-CccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCc
Confidence 368885 999998886 6889999999998765 7883
No 85
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=31.44 E-value=47 Score=33.69 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=29.6
Q ss_pred CCceeecc-CCC--CCCcchhhHhHH----HHHHHHHHcCCceEEeecc
Q psy14958 235 PQTVYAGF-DPT--ASSLHIGNLLIL----INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 235 sl~~YiG~-dpT--a~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg~ 276 (362)
..+.|+-. -|+ + .+|+||+.+. ...|++...|+++..+.|-
T Consensus 17 ~~~~~v~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~ 64 (560)
T 3h99_A 17 AKKILVTCASPYANG-SIHLGHMLEHIQADVWVRYQRMRGHEVNFICAD 64 (560)
T ss_dssp CCEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCcEEEeCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHcCCeEEEeeee
Confidence 34556522 133 4 4999998886 7789999999998877764
No 86
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=29.09 E-value=44 Score=34.18 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCceee-ccCCCCCCcchhhHhHH----HHHHHHHHcCCceEEee
Q psy14958 235 PQTVYA-GFDPTASSLHIGNLLIL----INLIHWQRAGHQVIALM 274 (362)
Q Consensus 235 sl~~Yi-G~dpTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lI 274 (362)
..+.|+ |-.+. +.+|+||+.+. +.-||++..|+++..+.
T Consensus 42 ~v~~YvcgPTvY-g~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~ 85 (501)
T 3sp1_A 42 NVKVYACGPTVY-NYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAM 85 (501)
T ss_dssp CEEEEECCCBCS-SCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cceEEeCCCcCC-CCcchhhhHHHHHHHHHHHHHHHcCCceeEEe
Confidence 356665 33333 35999998886 88999999999987774
No 87
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=26.42 E-value=60 Score=30.71 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=25.3
Q ss_pred CCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecch
Q psy14958 243 DPTASSLHIGNLLIL-INLIHWQRAGHQVIALMICL 277 (362)
Q Consensus 243 dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~i 277 (362)
.||+ .+|+||+.+. .-|.+.+..|.+-+.-|.|.
T Consensus 13 sPtG-~LHiG~~rtal~n~l~Ar~~~g~~ilRieDt 47 (298)
T 1nzj_A 13 SPSG-ELHFGSLIAALGSYLQARARQGRWLVRIEDI 47 (298)
T ss_dssp CTTS-CCCHHHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCC-CccHHHHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 3555 3999999886 66667777788877778773
No 88
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=25.26 E-value=1.1e+02 Score=25.38 Aligned_cols=46 Identities=7% Similarity=-0.083 Sum_probs=32.1
Q ss_pred ccceeEEEcCccccccCC--CCCCcccCCCCHHHHHHHHHHHHHHHHH
Q psy14958 102 KELSNGKIGGATAQVGDP--SGKTKDRDKQDLATVQTNTKGIEKNIKT 147 (362)
Q Consensus 102 ~~~~~~lIGg~Ta~IGDP--SGr~~~R~~Lt~e~i~~Na~~i~~Qi~~ 147 (362)
.|.-+.||+.+.+--..| .-....+..++.++.++-++.|++.+..
T Consensus 88 ~HlH~HviPR~~~D~~~p~~vw~~~~~~~~~~eel~~~~~~ir~~L~~ 135 (137)
T 3ohe_A 88 PQLHLHHIVRYQGDPAWPGPVWGKQPPVPYTEEQQASVKAKLQPLLEQ 135 (137)
T ss_dssp CSCCEEEEEECTTSTTTTSCCTTSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCCCCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 344578999887533222 1122367889999999999999988765
No 89
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=23.71 E-value=42 Score=35.76 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCCCCcchhhHhHH----HHHHHHHHcCCceEEeec
Q psy14958 244 PTASSLHIGNLLIL----INLIHWQRAGHQVIALMI 275 (362)
Q Consensus 244 pTa~~lHlGhlmsi----l~lr~fq~~G~~~i~lIg 275 (362)
|++ .+|+||+... ...||....|+++....|
T Consensus 45 ~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G 79 (810)
T 1wkb_A 45 LSG-HLHVGHARTYTIPDVIARFKRMQGYNVLFPMA 79 (810)
T ss_dssp TTS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECCCC
T ss_pred CCC-CCccccchhHHHHHHHHHHHHcCCCccCcCCc
Confidence 344 4999998876 888999999999877665
No 90
>4en6_A Hemagglutinin components HA-22/23/53; carbohydrate/sugar binding, sugar binding protein; HET: SIA GAL BGC; 2.56A {Clostridium botulinum} PDB: 4en7_A* 4en8_A* 4en9_A* 2z5a_A 2zoe_A* 2zs6_A
Probab=23.10 E-value=65 Score=29.16 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=26.8
Q ss_pred eEEEcCccccccCCCCCCcccCC------CCHHHHHHHHHH
Q psy14958 106 NGKIGGATAQVGDPSGKTKDRDK------QDLATVQTNTKG 140 (362)
Q Consensus 106 ~~lIGg~Ta~IGDPSGr~~~R~~------Lt~e~i~~Na~~ 140 (362)
.++=-|.||.||||.=|.++||. .+.|=++++++.
T Consensus 67 ~li~~gssg~i~~~Rlr~tt~P~~~~st~F~qeYie~~vq~ 107 (224)
T 4en6_A 67 NISNNGCTAIVGDLRIRETATPYYYPTASFNEEYIKNNVQN 107 (224)
T ss_dssp EEEETTCEEEEEEECCTTTCCCEEECCSSCCHHHHHHHHHH
T ss_pred eEeecCCcceeecceeccCCceeeecCccchHHHHHHHHHH
Confidence 35678999999999999999995 455655555543
No 91
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=20.78 E-value=70 Score=32.29 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=26.6
Q ss_pred CCCCCCcchhhHhHH-HHHHHHHHcCCceEEeecc
Q psy14958 243 DPTASSLHIGNLLIL-INLIHWQRAGHQVIALMIC 276 (362)
Q Consensus 243 dpTa~~lHlGhlmsi-l~lr~fq~~G~~~i~lIg~ 276 (362)
.||+ .+|+||+.+. ..|.+.+..|.+-+.=|.|
T Consensus 9 sPtG-~LHiG~~rtal~n~l~Ar~~~G~filRieD 42 (468)
T 1j09_A 9 SPTG-DPHVGTAYIALFNYAWARRNGGRFIVRIED 42 (468)
T ss_dssp CCSS-SCBHHHHHHHHHHHHHHHHTTCEEEECBCC
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHcCCEEEEEeCc
Confidence 3666 4999998886 7788888889888777887
Done!