RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14958
(362 letters)
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase,
protein-substrate complex, ATP-BI ligase, mitochondrion,
nucleotide-binding, protein biosynth; HET: YSA; 2.20A
{Homo sapiens} PDB: 3zxi_A*
Length = 356
Score = 175 bits (447), Expect = 3e-52
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 42/175 (24%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MI------- 275
PQT+Y GFDPTA SLH+G+LL L+ L H QRAGH VIAL +
Sbjct: 40 RGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLGDPSGRT 99
Query: 276 ----------------CLSQILWR-------------TCNEEAVVNNMSWYNSINVIDFM 306
L L + V++N +WY +++DF+
Sbjct: 100 KEREALETERVRANARALRLGLEALAANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFL 159
Query: 307 NHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ FRMG +L +QSV RL+S GM+ EF YQ+ Q+YD+ +L++ + CR Q
Sbjct: 160 AAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQ 214
Score = 128 bits (324), Expect = 3e-34
Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 40/160 (25%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGATA++GDPSG+TK+R+ + V+ N + + ++ + NH+Q F S
Sbjct: 85 VGGATARLGDPSGRTKEREALETERVRANARALRLGLEALAANHQQLFTDG--RSWGSFT 142
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V++N +WY +++DF+ + FRMG +L +QSV
Sbjct: 143 VLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDF 202
Query: 204 -------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GGSDQ+GNI +G++ I+KL G+ VF +
Sbjct: 203 YYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGI 242
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group
I intron; HET: TYR; 1.95A {Neurospora crassa} PDB:
2rkj_A
Length = 392
Score = 165 bits (421), Expect = 6e-48
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 46/179 (25%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MI------- 275
+L+ Y G DPTA SLH+G+LL L+ L G++ L I
Sbjct: 58 ELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRL 117
Query: 276 --------------------CLSQIL-------------WRTCNEEAVVNNMSWYNSINV 302
L ++ + +VNN W+N +
Sbjct: 118 KSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPM 177
Query: 303 IDFMNHIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
++ + + R+G ML + +V ++ G+++ EF+Y I Q +DW L+ + + Q
Sbjct: 178 LEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGWDWFELFYQQGVQMQ 236
Score = 115 bits (291), Expect = 2e-29
Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 40/176 (22%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDR--KDSLKP 166
IGG+TA++GDP+G+ K RD + N I +K ++ N + D +
Sbjct: 103 IGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARK 162
Query: 167 PIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV----------------------- 203
+VNN W+N +++ + + R+G ML + +V
Sbjct: 163 RGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQGDGVSFAEFTYPIMQGW 222
Query: 204 ---------------GGSDQMGNIKAGHDLISKLYGKTVFDLLVRTPQTVYAGFDP 244
GGSDQ GNI +G +++ + A +
Sbjct: 223 DWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDEC 278
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 157 bits (399), Expect = 2e-44
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 35/167 (20%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MI------- 275
R P TVYAGFDPTA SLH G+L+ L+ L +QRAGH+ I L MI
Sbjct: 26 AEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVG 85
Query: 276 -------------------CLSQILWRTCNEEA--VVNNMSWYNSINVIDFMNHIARLFR 314
L + + + V NN+ W S++ I+F+ I + F
Sbjct: 86 ERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFS 145
Query: 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ ML + ++ RL E G++YTEFSY + Q+ D+ L++ H C Q
Sbjct: 146 VNVMLARDTIRRRLAGE-GISYTEFSYLLLQANDYVELHRRHGCTLQ 191
Score = 100 bits (251), Expect = 1e-23
Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 47/159 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
GGAT +GDP +R + TV T+ I ++ D DS I
Sbjct: 71 AGGATGMIGDPRDVG-ERSLNEADTVAEWTERIRGQLERFV---------DFDDSPMGAI 120
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
V NN+ W S++ I+F+ I + F + ML + ++
Sbjct: 121 VENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEGISYTEFSYLLLQANDYV 180
Query: 204 ------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GG+DQ GNI AG L+ + G TV L
Sbjct: 181 ELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHAL 219
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 155 bits (395), Expect = 5e-44
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 37/168 (22%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MI------- 275
LL T+Y GFDPTA SLHIG+L ++ + +Q+AGH+ IAL +I
Sbjct: 24 KLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKK 83
Query: 276 ----------------CLSQILWR------TCNEEAVVNNMSWYNSINVIDFMNHIARLF 313
+ + L R N + NN W ++VI F+ + + F
Sbjct: 84 SERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHF 143
Query: 314 RMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ M+ K+SV +R+E+ G+++TEFSY + Q+YD+ LY+ CR Q
Sbjct: 144 SVNYMMAKESVQSRIET--GISFTEFSYMMLQAYDFLRLYETEGCRLQ 189
Score = 104 bits (261), Expect = 5e-25
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 45/154 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPSGK +R TV+ + I++ + D + P
Sbjct: 69 VGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFL---------DFEADGNPAK 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ NN W ++VI F+ + + F + M+ K+SV
Sbjct: 120 IKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLR 179
Query: 204 -----------GGSDQMGNIKAGHDLISKLYGKT 226
GGSDQ GNI AG +LI K G+
Sbjct: 180 LYETEGCRLQIGGSDQWGNITAGLELIRKTKGEA 213
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 155 bits (394), Expect = 1e-43
Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 36/167 (21%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MI------- 275
DLL + T+Y G DPTA SLHIG+LL + L +Q GH+ I L MI
Sbjct: 26 DLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKS 85
Query: 276 --------------------CLSQILWRTCNEEAV-VNNMSWYNSINVIDFMNHIARLFR 314
+ I + AV VNN W I++I F+ +
Sbjct: 86 EERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVG 145
Query: 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ ML K S+ +RLE G++YTEF+Y I Q+ D+ HL +E NC+ Q
Sbjct: 146 VNYMLGKDSIQSRLEH--GISYTEFTYTILQAIDFGHLNRELNCKIQ 190
Score = 100 bits (252), Expect = 7e-24
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 46/154 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
IGG T +GDPSGK+++R Q V N +GI K + IF + +
Sbjct: 71 IGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEF----------GTDHGAV 120
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+VNN W I++I F+ + + ML K S+
Sbjct: 121 LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGH 180
Query: 204 -----------GGSDQMGNIKAGHDLISKLYGKT 226
GGSDQ GNI +G +L+ ++YG+T
Sbjct: 181 LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQT 214
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; HET: AZY; 1.80A {Escherichia
coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 151 bits (385), Expect = 2e-43
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 36/169 (21%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MI------- 275
+ L + P + GFDPTA SLH+G+L+ L+ L +Q+AGH+ +AL +I
Sbjct: 27 ERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKA 86
Query: 276 --------------------CLSQILWRTCNEEA--VVNNMSWYNSINVIDFMNHIARLF 313
++ L C E + NN W+ ++NV+ F+ I + F
Sbjct: 87 AERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHF 146
Query: 314 RMGDMLKKQSVVTRLESE-HGMNYTEFSYQIFQSYDWAHLYKEHNCRFQ 361
+ M+ K++V RL E G+++TEFSY + Q YD+A L K++
Sbjct: 147 SVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLC 195
Score = 101 bits (253), Expect = 2e-24
Identities = 43/161 (26%), Positives = 60/161 (37%), Gaps = 48/161 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
+GGAT +GDPS K +R TVQ I K + D I
Sbjct: 72 VGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPFL---------DFDCGENSAI 122
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
NN W+ ++NV+ F+ I + F + M+ K++V
Sbjct: 123 AANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNREDQGISFTEFSYNLLQGYD 182
Query: 204 --------------GGSDQMGNIKAGHDLISKLYGKTVFDL 230
GGSDQ GNI +G DL +L+ VF L
Sbjct: 183 FACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGL 223
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 108 bits (272), Expect = 1e-26
Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 34/158 (21%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MI------- 275
L P TV G DPT LH+G+ ++L + +Q GH+V+ + MI
Sbjct: 31 KLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRS 90
Query: 276 --------------------CLSQILWRTCNEEAVVNNMSWYNSINVIDFMNHIARLFRM 315
+IL + + + N W + + + + L +
Sbjct: 91 KTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVR-LTSLMTV 149
Query: 316 GDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLY 353
ML+++ R E+ ++ E Y Q+YD +
Sbjct: 150 AQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAIR 187
Score = 73.6 bits (181), Expect = 1e-14
Identities = 27/158 (17%), Positives = 45/158 (28%), Gaps = 46/158 (29%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
IG T +GDPSG++K R L + N K I R
Sbjct: 76 IGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILR-----QEPHL------FE 124
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSV------------------------- 203
+ N W + + + + L + ML+++
Sbjct: 125 LRYNSEWLEGLTFKEVVR-LTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDS 183
Query: 204 ---------GGSDQMGNIKAGHDLISKLYGKTVFDLLV 232
GG+DQ N+ G ++ L+
Sbjct: 184 VAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLM 221
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 58.8 bits (143), Expect = 6e-10
Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 25/145 (17%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MI----CLS 278
++L + ++ Y GF+P+ +H+G+ L + +I Q AG +I L + L
Sbjct: 22 EVLKKDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELD 80
Query: 279 QI---------LWRTCNEEA--VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTR 327
+I ++ +A V + + ++ +A + + ++ R
Sbjct: 81 EIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYR-LALKTTLKRARRSMELIAR 139
Query: 328 LESEHGMNYTEFSYQIFQSYDWAHL 352
+ + E Y I Q +L
Sbjct: 140 EDENPKV--AEVIYPIMQVNTSHYL 162
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 56.3 bits (136), Expect = 4e-09
Identities = 19/149 (12%), Positives = 48/149 (32%), Gaps = 38/149 (25%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALM-----------------ICL 277
Y G++P+ HIG L+ + + AG L I
Sbjct: 35 RIKGYIGYEPSGV-AHIGWLVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRA 93
Query: 278 S----QILWRTCNEEA----------VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQS 323
+ + + + ++ ++ VI +A+ + + + +
Sbjct: 94 AARIVRRVMEAAGVPVERVRFVDAEELASDKDYWG--LVIR----VAKRASLARVRRALT 147
Query: 324 VVTRLESEHGMNYTEFSYQIFQSYDWAHL 352
++ R E ++ ++ Y + Q D ++
Sbjct: 148 IMGRRAEEAEVDASKLIYPLMQVSDIFYM 176
Score = 35.1 bits (81), Expect = 0.032
Identities = 13/118 (11%), Positives = 38/118 (32%), Gaps = 25/118 (21%)
Query: 93 DLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNH 152
DL + + L A + D G D ++ + + + ++
Sbjct: 61 DLVEAGVDFSVL----EATWHAYINDKLGGDMDL-------IRAAARIVRRVMEAAGVPV 109
Query: 153 EQ--YFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNH--IARLFRMGDMLKKQSVGGS 206
E+ + + + ++ ++ VI +AR+ R ++ +++
Sbjct: 110 ERVRFVDAEE--------LASDKDYWG--LVIRVAKRASLARVRRALTIMGRRAEEAE 157
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 54.6 bits (132), Expect = 1e-08
Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 26/141 (18%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MI----CLSQILWRT 284
Y G++P+ +H+G+++ + L+ Q AG ++I L + +I
Sbjct: 32 KPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVA 90
Query: 285 CNEEAV-------------VNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVTRLESE 331
+ V V + S + + + +AR+ + + V+R + +
Sbjct: 91 DYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKED 150
Query: 332 HGMNYTEFSYQIFQSYDWAHL 352
+ ++ Y + Q+ D AHL
Sbjct: 151 PMV--SQMIYPLMQALDIAHL 169
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 50.6 bits (121), Expect = 4e-07
Identities = 16/156 (10%), Positives = 44/156 (28%), Gaps = 39/156 (25%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL--------------- 273
++L +Y G T H+ + + + + +AG +V L
Sbjct: 29 EILKERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPW 87
Query: 274 ---------MICLSQILWRTCNEEA----VVNNMSWYNS----INVIDFMNHIARLFRMG 316
+ + + + + + S ++V + + +
Sbjct: 88 ELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQ----- 142
Query: 317 DMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHL 352
K++ ++ + Y Q+ D +L
Sbjct: 143 -HDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYL 177
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 49.4 bits (118), Expect = 8e-07
Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 31/146 (21%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL------MIC-----LSQILWR 283
+Y G PT H G + + L + +AG +V L + L + +R
Sbjct: 39 HLKLYWGTAPTGR-PHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYR 97
Query: 284 TC-NEEAV----------------VNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVVT 326
E + V S+ + + + ++ + D + + V
Sbjct: 98 AKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVV 157
Query: 327 RLESEHGMNYTEFSYQIFQSYDWAHL 352
+ + + + Y + Q+ D L
Sbjct: 158 KQVANPLL--SGLIYPLMQALDEQFL 181
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 59/418 (14%), Positives = 125/418 (29%), Gaps = 122/418 (29%)
Query: 8 SKSEKLFVAMNCREIL---SEIFGLKYFLS---PLLSRGSA-----STQGISRYKLSPCG 56
S ++++ R+ L +++F KY +S P L A + + + G
Sbjct: 106 SMMTRMYI--EQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 57 HLLAENIKKEWVRSCVLRREEPAFLYSQQ------GDCENETDLQDMFLTTKELSNGKIG 110
K WV V + + +C + + +M L +I
Sbjct: 163 --------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---LLY-QID 210
Query: 111 GATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVV 170
D S K R I+ ++ + + K ++ L +V+
Sbjct: 211 PNWTSRSDHSSNIKLR-----------IHSIQAELRRLLK------SKPYENCL---LVL 250
Query: 171 NNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVGGSDQMGNIKAGH-------------- 216
N+ + + N ++ +L + +D + H
Sbjct: 251 LNV-Q--NAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 217 --DLISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGH------ 268
L+ K DL P+ V +P S+ I + L W H
Sbjct: 303 VKSLLLKYLDCRPQDL----PREVLTT-NPRRLSI-IAESIR-DGLATWDNWKHVNCDKL 355
Query: 269 -QVIALMI-CLSQILWRTCNEE-AV----VN------NMSWYNSI--NVIDFMNHIARLF 313
+I + L +R + +V + ++ W++ I +V+ +N + +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 314 RMGDMLKKQSVVTRLE--------SEHGMNYTEF------SYQIFQSYDWAHLYKEHN 357
+++KQ + + N Y I +++D L +
Sbjct: 416 ----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Score = 41.0 bits (95), Expect = 5e-04
Identities = 33/252 (13%), Positives = 78/252 (30%), Gaps = 52/252 (20%)
Query: 77 EPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQT 136
E AF+ DC++ D+ L+ +E+ + I + + +
Sbjct: 26 EDAFV--DNFDCKDVQDMPKSILSKEEIDH--I------IMSKDAVSGTLRLFWT-LLSK 74
Query: 137 NTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGD 196
+ ++K ++ + R + ++ K + P S+ ++ RL+
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQP----------SMMTRMYIEQRDRLYNDNQ 124
Query: 197 MLKKQSVGGSDQMGNIKAG------HDLISKLY-----GKTVFDLLVRTPQTVYAGFDPT 245
+ K +V ++ + + GKT L V V D
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMD-- 181
Query: 246 ASSLHIGNLLILINLIHWQRAGHQVI--ALMICLSQILWR-TCNEEAVVNNMSWYNSINV 302
I W + ++ L ++L++ N + ++ S + +
Sbjct: 182 -------------FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRI 227
Query: 303 IDFMNHIARLFR 314
+ RL +
Sbjct: 228 HSIQAELRRLLK 239
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 1e-04
Identities = 63/388 (16%), Positives = 113/388 (29%), Gaps = 142/388 (36%)
Query: 34 SPLL---SRGSAST------QGISR---------YKLSPCGHLLAENIKK--EWVRSCVL 73
S L G+A QG + Y+ L+ + IK E + +
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH--VLVGDLIKFSAETLSELIR 200
Query: 74 RREEPAFLYSQQGDC----ENETDLQDM-FLTTKELSNGKIG-------GATAQVGDPSG 121
+ +++Q + EN ++ D +L + +S IG TA++ G
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL---LG 257
Query: 122 KTKDRDKQDLATVQTNTKGI-------------------EKNIKTIF----RNHEQY--- 155
T + L +++G+ K I +F R +E Y
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 156 -FW-KDRKDSLK-------PPIVVNNMSWYNSINVIDFMN---------HIAR------- 190
+DSL+ P + ++N++ + ++ N I+
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 191 --------LFRMGDMLKKQSVG-GSDQMGNIKAGHDLIS--KLYGKTVF---------DL 230
L+ + L+K G DQ + S KL F L
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQS---RIPF---SERKLKFSNRFLPVASPFHSHL 431
Query: 231 LVRTPQTVYA-----GFDPTASSLHI-------G-NLLILINLIHWQRAGHQVIALMICL 277
LV + A + I G +L +L I + I I
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS------ERIVDCIIR 485
Query: 278 SQILWRTCNEEAVVNNMSWYNSINVIDF 305
+ W E + ++DF
Sbjct: 486 LPVKW----ETTTQFKATH-----ILDF 504
Score = 40.8 bits (95), Expect = 7e-04
Identities = 56/328 (17%), Positives = 98/328 (29%), Gaps = 118/328 (35%)
Query: 40 GSASTQ----GISRYKLSPCGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQ 95
GS Q G+ YK S A+++ W R+ ++ F +
Sbjct: 1625 GS---QEQGMGMDLYKTSK----AAQDV---WNRADNHFKDTYGF------------SIL 1662
Query: 96 DMFLT-TKELSNGKIGGATAQVGDPSGKTKDRDKQDLATVQTNTKG---IEKNIKTIFRN 151
D+ + L T G GK + R+ +T G EK K I +
Sbjct: 1663 DIVINNPVNL--------TIHFGGEKGK-RIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 152 HEQYFWKDRKDSLK------PPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVGG 205
Y ++ K L P + + M A F LK + G
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTL--ME-------------KA-AFED---LKSK---G 1751
Query: 206 SDQMGNIKAGHDL--ISKLYGKTVFDLLVRTPQTVYAGFDPTASSLHI----GNLL-ILI 258
AGH L + L A S + + G + + +
Sbjct: 1752 LIPADATFAGHSLGEYAALAS--------------LADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 259 NLIHWQRAGHQVIALMICLSQILWRTCNEEA-----------------VVNNMSWYNSIN 301
R+ + +IA+ ++ + ++EA +VN YN N
Sbjct: 1798 PRDELGRSNYGMIAINP--GRVA-ASFSQEALQYVVERVGKRTGWLVEIVN----YNVEN 1850
Query: 302 ---VI--DFMNHIARLFRMGDMLKKQSV 324
V D + + + + + +K Q +
Sbjct: 1851 QQYVAAGD-LRALDTVTNVLNFIKLQKI 1877
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 38.5 bits (89), Expect = 0.003
Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 235 PQTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQVIALMICLSQILWRTCNEEAVVNN 293
P +Y G P++ S+H+G+++ + + ++ + + L++ V N
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161
Query: 294 MSWYNSINVI 303
+ N+ ++I
Sbjct: 162 FARENAKDII 171
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 37.5 bits (86), Expect = 0.005
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQ-VIALMICLSQILWRTCNEEAVVNN 293
P +Y G P++ +LH+G+LL I + Q A V+ + + L A V++
Sbjct: 91 PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150
Query: 294 MSWYNSINVI 303
+ N ++I
Sbjct: 151 YTRENIKDII 160
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 35.7 bits (82), Expect = 0.023
Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 235 PQTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQVIALMICLSQILWRTCNEEAVVNN 293
P +Y G P++ ++H+G+L+ + ++ M + LW+ + +
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167
Query: 294 MSWYNSINVI 303
N+ ++I
Sbjct: 168 A-VENAKDII 176
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.026
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 39/107 (36%)
Query: 60 AENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIGGATAQVGDP 119
E+I+K W REE Q+ + E D ++
Sbjct: 84 PESIRK-W-------REE------QRKRLQ-ELDAASK--VMEQ---------------- 110
Query: 120 SGKTKDRDKQDLA--TVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSL 164
+ +++ K+DL + + + +EKN R ++ F++ +
Sbjct: 111 --EWREKAKKDLEEWNQRQSEQ-VEKNKINN-RIADKAFYQQPDADI 153
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 34.2 bits (78), Expect = 0.058
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMI 275
P +Y G P++ S+H+G+L+ + Q + + + +
Sbjct: 78 PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQM 118
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 34.2 bits (78), Expect = 0.063
Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 235 PQTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQVIALMICLSQILWRTCNEEAVVNN 293
P +Y G P++ ++H+G+L+ + ++ M + LW+ + +
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 214
Query: 294 MSWYNSINVI 303
N+ ++I
Sbjct: 215 A-VENAKDII 223
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 34.1 bits (78), Expect = 0.068
Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 235 PQTVYAGFDPTASSLHIGNLL-ILINLIHWQRAGHQVIALMICLSQILWRTCNEEAVVNN 293
+Y G P++ SLH+G+L+ L ++ + + ++++ +N
Sbjct: 74 LFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHN 133
Query: 294 MSWYNSINVI 303
++ N ++I
Sbjct: 134 YAYENMKDII 143
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 32.7 bits (74), Expect = 0.16
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGH 268
P +Y G P++ ++HIG+ + + + Q A
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFK 134
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 30.0 bits (67), Expect = 1.2
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMI 275
P ++ P + + + L + Q A + + + I
Sbjct: 82 PTFIFIQKYPQ-KEVALEEYITLEFARYLQDAFNIQVIIQI 121
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 30.2 bits (67), Expect = 1.3
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 119 PSGKTKDRDKQDLA------TVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPIVVNN 172
SG T +KQ + + N + I + + Q D + +V+
Sbjct: 209 TSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLD-PQVRRSGCIVDT 267
Query: 173 MSWYNSINVIDFMNHIARLFR 193
S + ++HI
Sbjct: 268 PSISQLDENLAELHHIIEKLN 288
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET:
DNA; 3.10A {Homo sapiens}
Length = 459
Score = 29.3 bits (65), Expect = 2.3
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 51 KLSPCGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMFLTTKELSNGKIG 110
P G L +N+ EW S V+ RE Q + L G +
Sbjct: 98 GFGPLGVELRKNLAAEWWTSVVVFRE-------QVFPVDALHHKPGPLLPGDSAFRGGLR 150
Query: 111 GATAQ 115
Sbjct: 151 ENLLH 155
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 27.5 bits (61), Expect = 6.7
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 137 NTKGIEKNIKTIFRNHEQYFWKDRKD 162
+K +E N+++IF E+ + RK
Sbjct: 116 YSKVVENNLRSIFGTDEKAQ-QRRKQ 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.410
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,436,472
Number of extensions: 313034
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 55
Length of query: 362
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,049,298
Effective search space: 1081162566
Effective search space used: 1081162566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)