RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14958
(362 letters)
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 89.4 bits (221), Expect = 8e-21
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 37/169 (21%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMI------------- 275
LL T+Y GFDPTA SLHIG+L ++ + +Q+AGH+ IAL+
Sbjct: 24 KLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKK 83
Query: 276 ----------------------CLSQILWRTCNEEAVVNNMSWYNSINVIDFMNHIARLF 313
N + NN W ++VI F+ + + F
Sbjct: 84 SERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHF 143
Query: 314 RMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362
+ M+ K+SV +R+ E G+++TEFSY + Q+YD+ LY+ CR Q
Sbjct: 144 SVNYMMAKESVQSRI--ETGISFTEFSYMMLQAYDFLRLYETEGCRLQI 190
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 84.0 bits (207), Expect = 7e-19
Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 36/168 (21%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMI------------- 275
DLL + T+Y G DPTA SLHIG+LL + L +Q GH+ I L+
Sbjct: 25 DLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKS 84
Query: 276 ------CLSQILWRTC---------------NEEAVVNNMSWYNSINVIDFMNHIARLFR 314
Q+ + +VNN W I++I F+ +
Sbjct: 85 EERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVG 144
Query: 315 MGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEHNCRFQA 362
+ ML K S+ +RL EHG++YTEF+Y I Q+ D+ HL +E NC+ Q
Sbjct: 145 VNYMLGKDSIQSRL--EHGISYTEFTYTILQAIDFGHLNRELNCKIQV 190
Score = 32.0 bits (72), Expect = 0.099
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 109 IGGATAQVGDPSGKTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKDSLKPPI 168
IGG T +GDPSGK+++R Q V N +GI K + IF + +
Sbjct: 70 IGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGA----------V 119
Query: 169 VVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVGGSDQM 209
+VNN W I++I F+ + + ML K S+ +
Sbjct: 120 LVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEH 160
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 67.7 bits (164), Expect = 3e-13
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 34/155 (21%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICL----------------- 277
P TV G DPT LH+G+ ++L + +Q GH+V+ ++
Sbjct: 33 PLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPL 92
Query: 278 ----------------SQILWRTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLKK 321
+IL + + + N W + + + + L + ML++
Sbjct: 93 TLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVV-RLTSLMTVAQMLER 151
Query: 322 QSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEH 356
+ R E+ ++ E Y Q+YD + +
Sbjct: 152 EDFKKRYEAGIPISLHELLYPFAQAYDSVAIRADV 186
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 59.9 bits (144), Expect = 1e-10
Identities = 15/156 (9%), Positives = 44/156 (28%), Gaps = 31/156 (19%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIAL--------------- 273
++L +Y G T H+ + + + + +AG +V L
Sbjct: 26 EILKERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPW 84
Query: 274 -------------MICLSQILWRTCNEEAVVNNMSWYNSINVIDFMNHIARLFRMGDMLK 320
+ + + + + + + S + ++ +
Sbjct: 85 ELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQ--HDS 142
Query: 321 KQSVVTRLESEHGMNYTEFSYQIFQSYDWAHLYKEH 356
K++ ++ + Y Q+ D +L +
Sbjct: 143 KKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDA 178
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 57.7 bits (138), Expect = 4e-10
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 2/131 (1%)
Query: 229 DLLVRTPQTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVIALMICLSQILWRTCNEE 288
++L + ++ Y GF+P+ +H+G+ L + +I Q AG +I L+ L L + +
Sbjct: 22 EVLKKDEKSAYIGFEPSGK-IHLGHYLQIKKMIDLQNAGFDIIILLADLHAYLNQKGELD 80
Query: 289 AVVNNMSWYNSINVIDFMN-HIARLFRMGDMLKKQSVVTRLESEHGMNYTEFSYQIFQSY 347
+ + + + V RL + + S ++
Sbjct: 81 EIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE 140
Query: 348 DWAHLYKEHNC 358
D E
Sbjct: 141 DENPKVAEVIY 151
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 43.2 bits (101), Expect = 3e-05
Identities = 14/153 (9%), Positives = 34/153 (22%), Gaps = 26/153 (16%)
Query: 235 PQTVYAGFDPTASSLHIGNLLILINLIH-WQRAGHQVIALMICLSQILWRTCNEEAVVNN 293
P +Y G P++ ++H+G+L+ I ++ M + LW+ + +
Sbjct: 74 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 133
Query: 294 MSWYNSIN------------------------VIDFMNHIARLFRMGDMLKKQSVVTRLE 329
+ I + +
Sbjct: 134 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDC 193
Query: 330 SEHGMNYTEFSYQIF-QSYDWAHLYKEHNCRFQ 361
+ F S+ +
Sbjct: 194 IGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLI 226
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 29.6 bits (66), Expect = 0.52
Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 26/138 (18%)
Query: 50 YKLSPCGHLLAENIKKEWVRSCVLRREEPAFLYSQQGDCENETDLQDMF-LTTKELSNGK 108
Y P G L N+K+ W R V R+ DM L L++
Sbjct: 32 YDYGPLGVELKNNLKQAWWRRNVYERD-------------------DMEGLDASVLTHRL 72
Query: 109 IGGATAQVGDPSG------KTKDRDKQDLATVQTNTKGIEKNIKTIFRNHEQYFWKDRKD 162
+ + + TK R + D + + +++ + + E +
Sbjct: 73 VLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAM 132
Query: 163 SLKPPIVVNNMSWYNSIN 180
P M+ ++
Sbjct: 133 MQAPERAGGAMTAAGVLD 150
>d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida
[TaxId: 303]}
Length = 130
Score = 27.5 bits (60), Expect = 1.3
Identities = 11/81 (13%), Positives = 26/81 (32%)
Query: 151 NHEQYFWKDRKDSLKPPIVVNNMSWYNSINVIDFMNHIARLFRMGDMLKKQSVGGSDQMG 210
H F ++++M+ + ++ A L + + + G
Sbjct: 45 GHSYLFAYTPVALKSLKQLLDDMAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAG 104
Query: 211 NIKAGHDLISKLYGKTVFDLL 231
A D + K++ + LL
Sbjct: 105 IDMAAWDALGKVHETPLVKLL 125
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 28.2 bits (62), Expect = 1.4
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 236 QTVYAGFDPTASSLHIGNLLILINLIHWQRAGHQVI 271
+T+++G P+ + IGN + + + +
Sbjct: 2 KTIFSGIQPSGV-ITIGNYIGALRQFVELQHEYNCY 36
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 25.8 bits (56), Expect = 7.9
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 18/130 (13%)
Query: 230 LLVRTPQTVYAGFDPTASSLHIGNLLILINL--------IHWQRAGHQVIALMICLSQIL 281
L V P+ +YAG+D + + L L + W +A L + L
Sbjct: 7 LEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTL 66
Query: 282 WRTCNEEAVVNNMSWYNSINVIDFM----------NHIARLFRMGDMLKKQSVVTRLESE 331
+ + + W + + L M D K V+
Sbjct: 67 LQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPDMYDQCKHMLYVSSELHR 126
Query: 332 HGMNYTEFSY 341
++Y E+
Sbjct: 127 LQVSYEEYLC 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.410
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,356,291
Number of extensions: 60483
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 15
Length of query: 362
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,226,816
Effective search space: 338601216
Effective search space used: 338601216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)