BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14960
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 63 YCLALFQDLTLRESSKSYRAWKHT-TLPLYL------DFYMFNWTNPQESLSNPNVKPIV 115
Y A FQD+ S Y+ W H PL D + F P+ + +NP VK +
Sbjct: 250 YEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYL 309
Query: 116 VEVGPYVFRE 125
++V Y RE
Sbjct: 310 LDVATYWIRE 319
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 63 YCLALFQDLTLRESSKSYRAWKHT-TLPLYL------DFYMFNWTNPQESLSNPNVKPIV 115
Y A FQD+ S Y+ W H PL D + F P+ + +NP VK +
Sbjct: 250 YEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYL 309
Query: 116 VEVGPYVFRE 125
++V Y RE
Sbjct: 310 LDVATYWIRE 319
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 199 TEKKLYIKKTVRELLFDGYDDGVLDLMKKLENLIKIPVQDRFAASAV 245
T+ LY K L D Y +G+LDL + + L+ P R A +A+
Sbjct: 76 TKYDLYGKDMKERALIDMYSEGILDLTEMIGQLVLCPPDQREAKTAL 122
>pdb|1IUJ|A Chain A, The Structure Of Tt1380 Protein From Thermus Thermophilus
pdb|1IUJ|B Chain B, The Structure Of Tt1380 Protein From Thermus Thermophilus
Length = 106
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 71 LTLRESSKSYRAWKHTTLPLYLDFYMFNWTNPQESLSNPN 110
+TL ES +++RAW T P + + + + T P+E+ PN
Sbjct: 53 MTLWESEEAFRAW--TESPAFKEGHARSGTLPKEAFLGPN 90
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 199 TEKKLYIKKTVRELLFDGYDDGVLDLMKKLENLIKIPVQDRFAASAV 245
T+ LY K L D Y +G+LDL + + L+ P R A +A+
Sbjct: 76 TKYDLYGKDMKERALIDMYSEGILDLTEMIGQLVLXPPDQREAKTAL 122
>pdb|2A22|A Chain A, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
pdb|2A22|B Chain B, Structure Of Vacuolar Protein Sorting 29 From
Cryptosporidium Parvum
Length = 215
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 92 LDFYMFNWTNPQESLSNPNVKPIVVEVGPYVFREVHEKLNLTWNANNTVSYWQRR 146
LD +FN +P+ + P +VV++G + +H L W+ ++ WQRR
Sbjct: 88 LDSAIFN-PDPESNGVFPEY--VVVQIGEFKIGLMHGNQVLPWDDPGSLEQWQRR 139
>pdb|1ML6|A Chain A, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
pdb|1ML6|B Chain B, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
Length = 221
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 199 TEKKLYIKKTVRELLFDGYDDGVLDLMKKLENLIKIPVQDRFAASAV 245
T+ LY K L D Y +G+LDL + + L+ P R A +A+
Sbjct: 76 TKYDLYGKDMKERALIDMYTEGILDLTEMIGQLVLXPPDQREAKTAL 122
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 63 YCLALFQDLTLRESSKSYRAWKH-TTLPLYL------DFYMFNWTNPQESLSNPNVKPIV 115
Y A FQD+ ++ Y+ W H PL D + F P+ + ++P VK +
Sbjct: 250 YEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYL 309
Query: 116 VEVGPYVFRE 125
++V Y RE
Sbjct: 310 LDVATYWIRE 319
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 63 YCLALFQDLTLRESSKSYRAWKH-TTLPLYL------DFYMFNWTNPQESLSNPNVKPIV 115
Y A FQD+ ++ Y+ W H PL D + F P+ + ++P VK +
Sbjct: 250 YEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYL 309
Query: 116 VEVGPYVFRE 125
++V Y RE
Sbjct: 310 LDVATYWIRE 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,905,610
Number of Sequences: 62578
Number of extensions: 267725
Number of successful extensions: 615
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 11
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)