Query psy14960
Match_columns 250
No_of_seqs 142 out of 529
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 16:58:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01130 CD36: CD36 family; I 100.0 2.2E-54 4.8E-59 416.5 18.7 202 13-250 2-210 (467)
2 KOG3776|consensus 100.0 7.9E-52 1.7E-56 401.4 15.1 208 6-250 6-216 (507)
3 PF07569 Hira: TUP1-like enhan 36.5 52 0.0011 29.0 4.1 60 93-156 33-98 (219)
4 PF04022 Staphylcoagulse: Stap 24.1 56 0.0012 19.6 1.4 14 130-143 13-26 (27)
5 PF03839 Sec62: Translocation 23.3 57 0.0012 29.3 2.1 27 12-38 113-139 (224)
6 COG2165 PulG Type II secretory 22.7 98 0.0021 23.9 3.1 27 11-37 11-37 (149)
7 PF07356 DUF1481: Protein of u 21.7 1.5E+02 0.0033 26.1 4.3 49 90-146 36-84 (195)
8 PF08693 SKG6: Transmembrane a 21.7 83 0.0018 20.8 2.1 17 13-29 19-35 (40)
9 PLN03160 uncharacterized prote 19.1 72 0.0016 28.2 1.8 20 6-25 35-54 (219)
10 TIGR03545 conserved hypothetic 18.3 1.1E+02 0.0023 31.2 3.0 43 8-50 3-45 (555)
No 1
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=100.00 E-value=2.2e-54 Score=416.52 Aligned_cols=202 Identities=44% Similarity=0.739 Sum_probs=188.8
Q ss_pred hhHHHHHHHHHhhhhhh-hHHHHHHHHHHhhhhcccceeecccccccCccccccccceeeEeccCCcccccccccCccee
Q psy14960 13 FSVFVLISICGVMVAIL-WPTVFRMLIEKSLEAYNTSIVFGLLHVQLDKPYYCLALFQDLTLRESSKSYRAWKHTTLPLY 91 (250)
Q Consensus 13 ~~~g~~l~i~g~~~~~~-~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~gS~~y~~W~~pp~~~~ 91 (250)
+++|++++++|+++.++ ||.+++.+++|+ ++|+|||+.|+.|++||+|++
T Consensus 2 ~~~g~~~~~~g~~~~~~~~~~~~~~~i~~~-----------------------------~~L~~~s~~~~~W~~~p~p~~ 52 (467)
T PF01130_consen 2 AVVGILLLVLGILLGFVVFPSIIDSQIKKQ-----------------------------LVLKPGSDSYDNWKKPPVPIY 52 (467)
T ss_pred EeehhHHHHHhHhhhhhhhHHHHHHHHHhC-----------------------------cEECCCChhHhhhhcCCCccE
Confidence 45688888999998876 999999999999 999999999999999999999
Q ss_pred EEEEEEEccCCcccccCCCCCCeEEEeccEEEEEeeeeeeeEEcCCC-cEEEeeeeeeEEccCCCCC-CCCCcEEEehHH
Q psy14960 92 LDFYMFNWTNPQESLSNPNVKPIVVEVGPYVFREVHEKLNLTWNANN-TVSYWQRRTWYFEPELSRG-SLSDEITNVNVV 169 (250)
Q Consensus 92 ~~~Y~FNvTNpeefv~~~g~kP~v~EvGPYvY~E~~~k~nv~f~~n~-tVsY~~~~~~~F~pe~S~g-~~~D~It~~N~~ 169 (250)
++||+|||||||| |+++|+||+|+|+|||+|+|+++|+|++|++|+ ||+|+++++|+|+|++|++ +++|+||+||++
T Consensus 53 ~~~y~fNvTNp~e-v~~~g~kP~~~EvGPY~y~e~~~k~nv~~~~~~~tvsY~~~~~~~F~~~~S~~~~~~d~it~~N~~ 131 (467)
T PF01130_consen 53 FKFYFFNVTNPEE-VLNGGAKPNVQEVGPYVYREYREKVNVTFNDNGSTVSYRQKRTFFFDPELSCGCSEDDTITTPNIP 131 (467)
T ss_pred EEEEEEeccCHHH-HhCcCCCceEEEeCCEEEEeeeeeeeeEEcCCCcEEEEEeeeeEEeccccCCCCCccceEEeccHH
Confidence 9999999999999 877799999999999999999999999999988 8999999999999999999 799999999999
Q ss_pred HHHHHHHhhhhhcchhHHHHHHHHHHHhhcCCcceEeccccccccCCCCchHHHHHHh----hccccCCCCCCeeEEeec
Q psy14960 170 AVTIATMADQIHVKYSDLVKKIINMFLKNTEKKLYIKKTVRELLFDGYDDGVLDLMKK----LENLIKIPVQDRFAASAV 245 (250)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Fvt~tV~e~LfdGY~Dpll~~~~~----~~~~~~~p~~~kfG~f~~ 245 (250)
+++++++++ +.+++++.+++.+++..++++|+++||+|+|||||+||+++++++ +.+... | .++||||++
T Consensus 132 ~l~~~~~~~----~~~~~~~~~~~~~l~~~~~~~fv~~tv~e~Lf~GY~dpll~~~~~~~~~~~~~~~-~-~~~fg~~~~ 205 (467)
T PF01130_consen 132 LLGAASLVR----NMSPFVKSLINLLLNSLGEKLFVTRTVRELLFDGYEDPLLSLAKKLLDFLRPDLI-P-FDKFGLFYG 205 (467)
T ss_pred Hhhhhhhhc----cccHHHHHHHHHhhhccCCcceEeccHHHhhhccCchHHHHHHhhhhhhcCCccC-C-CCccccccc
Confidence 999999999 788999999999999999999999999999999999999999998 444211 3 499999999
Q ss_pred ccCCC
Q psy14960 246 MAMTE 250 (250)
Q Consensus 246 ~N~t~ 250 (250)
+|+|+
T Consensus 206 ~N~t~ 210 (467)
T PF01130_consen 206 RNGTY 210 (467)
T ss_pred cCCCC
Confidence 99983
No 2
>KOG3776|consensus
Probab=100.00 E-value=7.9e-52 Score=401.36 Aligned_cols=208 Identities=35% Similarity=0.659 Sum_probs=189.1
Q ss_pred ccceeeeh-hHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhcccceeecccccccCccccccccceeeEeccCCccccccc
Q psy14960 6 CVKKTLYF-SVFVLISICGVMVAILWPTVFRMLIEKSLEAYNTSIVFGLLHVQLDKPYYCLALFQDLTLRESSKSYRAWK 84 (250)
Q Consensus 6 ~~~~~~~~-~~g~~l~i~g~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~~gS~~y~~W~ 84 (250)
|.++.+.+ .+|++++++|+++...||.+++.+++++ ++|+|||.+++.|.
T Consensus 6 ~~~~~~~l~v~~~~~~v~g~~~~~~~~~i~~~~v~~~-----------------------------~~L~~gs~~~~~W~ 56 (507)
T KOG3776|consen 6 CRVRAGLLLVIGALLAVAGIVIVVVFPDIIDSMVDKN-----------------------------VVLRPGSDAFESWL 56 (507)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeEeeHHHHHHHHHhc-----------------------------eeeCCCchhhhhhh
Confidence 44444444 4477888889999888999999999999 99999999999999
Q ss_pred ccCcceeEEEEEEEccCCcccccCCCCCCeEEEeccEEEEEeeeeeeeEEcCCCcEEEee-eeeeEEccCCCCCCC-CCc
Q psy14960 85 HTTLPLYLDFYMFNWTNPQESLSNPNVKPIVVEVGPYVFREVHEKLNLTWNANNTVSYWQ-RRTWYFEPELSRGSL-SDE 162 (250)
Q Consensus 85 ~pp~~~~~~~Y~FNvTNpeefv~~~g~kP~v~EvGPYvY~E~~~k~nv~f~~n~tVsY~~-~~~~~F~pe~S~g~~-~D~ 162 (250)
+||++.++++|+|||||||| ++++|+||+|+|+|||+|+|.++|+|++|++|+|++|.+ +|+|+|+|++||++. +|.
T Consensus 57 ~pp~~~~~~~yiFNvTNpde-~~~~~~kp~v~EvGPyvy~E~~~K~~~~f~~n~tv~f~~~~k~~~F~p~~S~~~~~~d~ 135 (507)
T KOG3776|consen 57 NPPYPIYLNFYIFNVTNPDE-FLSGGAKPNVQEVGPYVYREIEQKVNIDFNENNTVSFYQNRKTYVFNPEESVGDCKDDK 135 (507)
T ss_pred cCCCccEEEEEEEecCCHHH-hhCcCCCCceEeeCCeEEEEEecccceeeccCCcEEEEeeccEEEechhhcCCCcCcCe
Confidence 99999999999999999999 877799999999999999999999999999999977777 999999999999987 799
Q ss_pred EEEehHHHHHHHHHhhhhhcchhHHHHHHHHHHHhhcCCcceEeccccccccCCCCchHHHHHHhhccccCCCCCCeeEE
Q psy14960 163 ITNVNVVAVTIATMADQIHVKYSDLVKKIINMFLKNTEKKLYIKKTVRELLFDGYDDGVLDLMKKLENLIKIPVQDRFAA 242 (250)
Q Consensus 163 It~~N~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Fvt~tV~e~LfdGY~Dpll~~~~~~~~~~~~p~~~kfG~ 242 (250)
|++||+++++++..++ +.. ++|.++++++..+++++|+++||+|+|||||+||+++++++..+ ..|..+|||+
T Consensus 136 I~~pN~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~~f~~~tV~e~Lf~GYeDpll~l~~~~~~--~~~~~~r~G~ 208 (507)
T KOG3776|consen 136 ITVPNIPALGAATSVK----REQ-FLRLAISIALTILGEKPFVTVTVGELLFDGYEDPLLSLINRFVP--IKPPSPRFGL 208 (507)
T ss_pred EEecCchhhhhhhhhh----hhH-HHHHHHHHHHHHhCCCcceEeeHHHHHHhhcccHHHHHHhhcCC--cCCcccceee
Confidence 9999999999999998 555 99999999999999999999999999999999999999998766 2334699999
Q ss_pred eecccCCC
Q psy14960 243 SAVMAMTE 250 (250)
Q Consensus 243 f~~~N~t~ 250 (250)
|+++|+|.
T Consensus 209 ~~~~Ngt~ 216 (507)
T KOG3776|consen 209 FYGYNGTS 216 (507)
T ss_pred ecccCCCc
Confidence 99999984
No 3
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.48 E-value=52 Score=29.00 Aligned_cols=60 Identities=13% Similarity=0.321 Sum_probs=39.5
Q ss_pred EEEEEEccCCcccccCC-CCCCeEEE---eccEEEEEeeeeeeeEEcCCCc--EEEeeeeeeEEccCCCC
Q psy14960 93 DFYMFNWTNPQESLSNP-NVKPIVVE---VGPYVFREVHEKLNLTWNANNT--VSYWQRRTWYFEPELSR 156 (250)
Q Consensus 93 ~~Y~FNvTNpeefv~~~-g~kP~v~E---vGPYvY~E~~~k~nv~f~~n~t--VsY~~~~~~~F~pe~S~ 156 (250)
.+|+||+.+-.. +..+ .-.|.+.- .++ +....=..+..+++|. |+..+.+.|.|++++.|
T Consensus 33 ~l~vWnl~~~k~-~~~~~Si~pll~~~~~~~~---~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~ 98 (219)
T PF07569_consen 33 LLYVWNLKKGKA-VLPPVSIAPLLNSSPVSDK---SSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC 98 (219)
T ss_pred eEEEEECCCCee-ccCCccHHHHhcccccccC---CCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence 599999999888 6553 33554442 111 1111223445567884 89999999999999885
No 4
>PF04022 Staphylcoagulse: Staphylocoagulase repeat; InterPro: IPR001443 Staphylocoagulase is an extracellular protein produced by several strains of Staphylococcus aureus and which specifically forms a complex with prothrombin [, ]. This complex named staphylothrombin can clot fibrinogen without any proteolytic cleavage of prothrombin. The C terminus of staphylocoagulase contains the tandem repeat which does not seem to be required for the procoagulant activity.
Probab=24.10 E-value=56 Score=19.59 Aligned_cols=14 Identities=50% Similarity=0.541 Sum_probs=11.2
Q ss_pred eeeEEcCCCcEEEe
Q psy14960 130 LNLTWNANNTVSYW 143 (250)
Q Consensus 130 ~nv~f~~n~tVsY~ 143 (250)
.||+=+.||+|+|-
T Consensus 13 ynvtt~~dgtvsyg 26 (27)
T PF04022_consen 13 YNVTTNQDGTVSYG 26 (27)
T ss_pred eeeEeccCceEecC
Confidence 47888889999983
No 5
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=23.26 E-value=57 Score=29.31 Aligned_cols=27 Identities=19% Similarity=0.512 Sum_probs=18.6
Q ss_pred ehhHHHHHHHHHhhhhhhhHHHHHHHH
Q psy14960 12 YFSVFVLISICGVMVAILWPTVFRMLI 38 (250)
Q Consensus 12 ~~~~g~~l~i~g~~~~~~~p~~~~~~i 38 (250)
+++++++++++++.+..+||..++..+
T Consensus 113 l~~~~~~~~v~a~~lFPlWP~~~r~gv 139 (224)
T PF03839_consen 113 LIGALLLVGVIAICLFPLWPRWMRQGV 139 (224)
T ss_pred HHHHHHHHHHHHHHhhhcChHHHhhee
Confidence 345667777777777888998665443
No 6
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.71 E-value=98 Score=23.85 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=17.4
Q ss_pred eehhHHHHHHHHHhhhhhhhHHHHHHH
Q psy14960 11 LYFSVFVLISICGVMVAILWPTVFRML 37 (250)
Q Consensus 11 ~~~~~g~~l~i~g~~~~~~~p~~~~~~ 37 (250)
-++=+-+.++|+|++.+.+.|.+....
T Consensus 11 TLiElLVvl~Iigil~~~~~p~~~~~~ 37 (149)
T COG2165 11 TLIELLVVLAIIGILAALALPSLQGSI 37 (149)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 344446677788888877777665443
No 7
>PF07356 DUF1481: Protein of unknown function (DUF1481); InterPro: IPR010858 This family consists of several hypothetical bacterial proteins of around 230 residues in length. Members of this family are often referred to as YjaH and are found in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=21.74 E-value=1.5e+02 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=31.6
Q ss_pred eeEEEEEEEccCCcccccCCCCCCeEEEeccEEEEEeeeeeeeEEcCCCcEEEeeee
Q psy14960 90 LYLDFYMFNWTNPQESLSNPNVKPIVVEVGPYVFREVHEKLNLTWNANNTVSYWQRR 146 (250)
Q Consensus 90 ~~~~~Y~FNvTNpeefv~~~g~kP~v~EvGPYvY~E~~~k~nv~f~~n~tVsY~~~~ 146 (250)
-+...|=|.=-+--| +...|...+-.+.-||. +.+.|+++|+++|++++
T Consensus 36 ~~~t~Yrwq~G~Lre-i~r~~~~~~~~~~~p~~-------v~lRFd~~G~avfmQr~ 84 (195)
T PF07356_consen 36 TYQTDYRWQQGKLRE-IRREGEQLKDNGLVPYS-------VHLRFDKDGEAVFMQRQ 84 (195)
T ss_pred EEEEEEEEeCCEeee-eeeehhhcccCCCCCce-------EEEEECCCCCEEEEEEE
Confidence 445566665555555 44445544444555554 45899999999999974
No 8
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.71 E-value=83 Score=20.84 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHhhhhhh
Q psy14960 13 FSVFVLISICGVMVAIL 29 (250)
Q Consensus 13 ~~~g~~l~i~g~~~~~~ 29 (250)
+.++++++++|+++.+.
T Consensus 19 VPV~vI~~vl~~~l~~~ 35 (40)
T PF08693_consen 19 VPVGVIIIVLGAFLFFW 35 (40)
T ss_pred echHHHHHHHHHHhheE
Confidence 35566666666655543
No 9
>PLN03160 uncharacterized protein; Provisional
Probab=19.10 E-value=72 Score=28.23 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=8.1
Q ss_pred ccceeeehhHHHHHHHHHhh
Q psy14960 6 CVKKTLYFSVFVLISICGVM 25 (250)
Q Consensus 6 ~~~~~~~~~~g~~l~i~g~~ 25 (250)
||.+|+.+.+++++++++++
T Consensus 35 ~~~~c~~~~~a~~l~l~~v~ 54 (219)
T PLN03160 35 NCIKCCGCITATLLILATTI 54 (219)
T ss_pred cceEEHHHHHHHHHHHHHHH
Confidence 33444433344444443333
No 10
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=18.32 E-value=1.1e+02 Score=31.17 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=0.0
Q ss_pred ceeeehhHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhccccee
Q psy14960 8 KKTLYFSVFVLISICGVMVAILWPTVFRMLIEKSLEAYNTSIV 50 (250)
Q Consensus 8 ~~~~~~~~g~~l~i~g~~~~~~~p~~~~~~i~~~~~~~~~~~~ 50 (250)
|+.+++++.++++++++++.+++|.+++..+++.+++-+-+.|
T Consensus 3 rW~gl~~~vviva~i~~l~~~~~dp~~K~~ie~~~seatGreV 45 (555)
T TIGR03545 3 RWSGLLGFLIIVAVILALLYFFFDPLAKKAIERSLEKAFGAKV 45 (555)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHCCeE
Done!