Query psy14960
Match_columns 250
No_of_seqs 142 out of 529
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 16:58:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqw_A Fimbrial protein; type 15.3 1.4E+02 0.0046 22.9 3.6 26 16-41 7-32 (144)
2 3sok_A Fimbrial protein; pilus 14.5 1.4E+02 0.0049 23.1 3.6 26 16-41 7-32 (151)
3 3m91_B Prokaryotic ubiquitin-l 14.2 38 0.0013 21.9 0.1 9 100-108 29-37 (44)
4 2hi2_A Fimbrial protein; type 11.2 1.4E+02 0.0048 23.1 2.6 23 16-38 7-29 (158)
5 1dzr_A DTDP-4-dehydrorhamnose 10.0 1E+02 0.0036 25.3 1.5 40 46-85 54-101 (183)
6 2knc_B Integrin beta-3; transm 8.2 1.7E+02 0.0058 20.9 1.8 13 19-31 21-33 (79)
7 3m9d_G Prokaryotic ubiquitin-l 7.7 97 0.0033 21.8 0.3 9 100-108 53-61 (68)
8 4hn1_A Putative 3-epimerase in 7.1 1.4E+02 0.0048 25.1 1.1 41 46-86 51-99 (201)
9 2ixk_A DTDP-4-dehydrorhamnose 6.5 1.9E+02 0.0066 23.6 1.6 40 46-85 56-102 (184)
10 2vqp_A Matrix protein; viral p 6.4 40 0.0014 29.1 -2.7 45 94-138 202-247 (257)
No 1
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=15.29 E-value=1.4e+02 Score=22.94 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHh
Q psy14960 16 FVLISICGVMVAILWPTVFRMLIEKS 41 (250)
Q Consensus 16 g~~l~i~g~~~~~~~p~~~~~~i~~~ 41 (250)
-+.++|+|++.++.+|.+.+..-+.+
T Consensus 7 livi~Ii~il~~ia~p~~~~~~~~~~ 32 (144)
T 1oqw_A 7 MIVVAIIGILAAIAIPQYQNYVARSE 32 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888765544433
No 2
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=14.51 E-value=1.4e+02 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHh
Q psy14960 16 FVLISICGVMVAILWPTVFRMLIEKS 41 (250)
Q Consensus 16 g~~l~i~g~~~~~~~p~~~~~~i~~~ 41 (250)
-+.++|+|++.++.+|.+.+..-+.+
T Consensus 7 lvviaIigiLaaia~p~~~~~~~~~~ 32 (151)
T 3sok_A 7 MIVVAIIGILAAFAIPAYNDYIARSQ 32 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888899998766554433
No 3
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=14.23 E-value=38 Score=21.92 Aligned_cols=9 Identities=11% Similarity=0.257 Sum_probs=2.1
Q ss_pred cCCcccccC
Q psy14960 100 TNPQESLSN 108 (250)
Q Consensus 100 TNpeefv~~ 108 (250)
+|++|||.+
T Consensus 29 ~NAeeFV~~ 37 (44)
T 3m91_B 29 ENAEDFVRA 37 (44)
T ss_dssp HTC------
T ss_pred HhHHHHHHH
Confidence 577776653
No 4
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=11.20 E-value=1.4e+02 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHH
Q psy14960 16 FVLISICGVMVAILWPTVFRMLI 38 (250)
Q Consensus 16 g~~l~i~g~~~~~~~p~~~~~~i 38 (250)
-+.++|+|++.++.+|.+.+..-
T Consensus 7 ~vvi~ii~il~~~~~p~~~~~~~ 29 (158)
T 2hi2_A 7 MIVIAIVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888887655443
No 5
>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*
Probab=10.02 E-value=1e+02 Score=25.28 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=28.9
Q ss_pred ccceeeccccccc-----Cccccccccc--ee-eEeccCCcccccccc
Q psy14960 46 NTSIVFGLLHVQL-----DKPYYCLALF--QD-LTLRESSKSYRAWKH 85 (250)
Q Consensus 46 ~~~~~~~~~~~~~-----~~~~~~~~~~--~~-l~L~~gS~~y~~W~~ 85 (250)
+..-|.=+.|.|+ .|.+.|..=. +- +-+++||++|..|..
T Consensus 54 s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~ 101 (183)
T 1dzr_A 54 SKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVG 101 (183)
T ss_dssp EETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEE
T ss_pred CCCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEE
Confidence 3345666899988 8889887432 22 567789999999876
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.22 E-value=1.7e+02 Score=20.85 Aligned_cols=13 Identities=23% Similarity=0.754 Sum_probs=7.6
Q ss_pred HHHHHhhhhhhhH
Q psy14960 19 ISICGVMVAILWP 31 (250)
Q Consensus 19 l~i~g~~~~~~~p 31 (250)
++++|+++..+|-
T Consensus 21 illiGllllliwk 33 (79)
T 2knc_B 21 ILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666554
No 7
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=7.73 E-value=97 Score=21.80 Aligned_cols=9 Identities=11% Similarity=0.257 Sum_probs=2.2
Q ss_pred cCCcccccC
Q psy14960 100 TNPQESLSN 108 (250)
Q Consensus 100 TNpeefv~~ 108 (250)
+|++|||.+
T Consensus 53 ~NAeefV~~ 61 (68)
T 3m9d_G 53 ENAEDFVRA 61 (68)
T ss_dssp SCC------
T ss_pred HhHHHHHHH
Confidence 677776653
No 8
>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A
Probab=7.13 E-value=1.4e+02 Score=25.09 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=30.1
Q ss_pred ccceeeccccccc-----Ccccccccc--cee-eEeccCCccccccccc
Q psy14960 46 NTSIVFGLLHVQL-----DKPYYCLAL--FQD-LTLRESSKSYRAWKHT 86 (250)
Q Consensus 46 ~~~~~~~~~~~~~-----~~~~~~~~~--~~~-l~L~~gS~~y~~W~~p 86 (250)
+..-|.=+.|.|+ .|-++|..= ++- +-+++||++|..|..-
T Consensus 51 S~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v 99 (201)
T 4hn1_A 51 SHRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIV 99 (201)
T ss_dssp ECTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEE
T ss_pred cCCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEE
Confidence 3445788899987 788898742 222 5678899999999863
No 9
>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*
Probab=6.46 E-value=1.9e+02 Score=23.65 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=28.1
Q ss_pred ccceeecccccc----cCccccccccc--ee-eEeccCCcccccccc
Q psy14960 46 NTSIVFGLLHVQ----LDKPYYCLALF--QD-LTLRESSKSYRAWKH 85 (250)
Q Consensus 46 ~~~~~~~~~~~~----~~~~~~~~~~~--~~-l~L~~gS~~y~~W~~ 85 (250)
+..-|.=+.|.| ..|.+.|..=. +- +-+++||++|..|..
T Consensus 56 s~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~ 102 (184)
T 2ixk_A 56 SARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVG 102 (184)
T ss_dssp EETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEE
T ss_pred CCCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEE
Confidence 334566688988 67888886322 22 567789999999876
No 10
>2vqp_A Matrix protein; viral protein, peripheral membrane Pro RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus} PDB: 2ykd_A
Probab=6.35 E-value=40 Score=29.12 Aligned_cols=45 Identities=13% Similarity=0.329 Sum_probs=32.8
Q ss_pred EEEEEccCCcccccCCC-CCCeEEEeccEEEEEeeeeeeeEEcCCC
Q psy14960 94 FYMFNWTNPQESLSNPN-VKPIVVEVGPYVFREVHEKLNLTWNANN 138 (250)
Q Consensus 94 ~Y~FNvTNpeefv~~~g-~kP~v~EvGPYvY~E~~~k~nv~f~~n~ 138 (250)
+-+-++|||..-|..-| ..-.+.|+|||+=.|...++--+|+.-+
T Consensus 202 ilvit~~~~KG~FK~l~agsQ~iveLG~Y~~~eSi~~v~~nW~H~~ 247 (257)
T 2vqp_A 202 LLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTA 247 (257)
T ss_dssp EEEEECCCSSGGGTTSCTTCEEEEECGGGCTTSCHHHHHHHEEEEE
T ss_pred EEEEEecCCcchHhhcCCCcEEEEeccchhhHhHHHHHHhcccccc
Confidence 56789999998444323 3446889999998888887777776544
Done!