Query psy14960
Match_columns 250
No_of_seqs 142 out of 529
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 16:58:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14960.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14960hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 29.8 22 0.0016 24.7 3.6 22 16-37 7-28 (158)
2 d1a7ia1 g.39.1.3 (A:8-35) Cyst 20.3 10 0.00075 20.6 0.0 11 3-13 2-12 (28)
3 d1b8ta1 g.39.1.3 (A:1-35) Cyst 16.5 16 0.0012 20.9 0.2 11 3-13 9-19 (35)
4 g1uhe.1 b.52.2.1 (B:,A:) Pyruv 12.3 44 0.0032 24.3 1.8 18 88-105 37-54 (121)
5 d1lk5a2 d.58.40.1 (A:131-210) 11.3 63 0.0046 21.3 2.3 33 88-121 46-79 (80)
6 d1ppya_ b.52.2.1 (A:) Pyruvoyl 10.1 57 0.0042 23.5 1.8 19 87-105 37-55 (118)
7 d1oi6a_ b.82.1.1 (A:) dTDP-4-k 9.2 61 0.0045 25.1 1.8 38 48-85 56-101 (202)
8 d1jnda2 d.26.3.1 (A:279-370) I 8.3 61 0.0045 22.1 1.3 9 117-125 71-79 (92)
9 d1obba1 c.2.1.5 (A:2-172) Alph 7.5 52 0.0038 24.4 0.6 14 93-107 144-157 (171)
10 d1up7a1 c.2.1.5 (A:1-162) 6-ph 7.5 53 0.0039 24.0 0.6 14 93-107 132-145 (162)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=29.84 E-value=22 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHH
Q psy14960 16 FVLISICGVMVAILWPTVFRML 37 (250)
Q Consensus 16 g~~l~i~g~~~~~~~p~~~~~~ 37 (250)
-+.++|+||+.++..|.+.+..
T Consensus 7 lVViaIIgILaaia~P~~~~~~ 28 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYT 28 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999876544
No 2
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=20.28 E-value=10 Score=20.65 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=8.2
Q ss_pred eeeccceeeeh
Q psy14960 3 TIGCVKKTLYF 13 (250)
Q Consensus 3 ~~g~~~~~~~~ 13 (250)
+.|||+|++++
T Consensus 2 kcg~c~ktvy~ 12 (28)
T d1a7ia1 2 KCGACGRTVYH 12 (28)
T ss_dssp BCSSSCCBCSS
T ss_pred ccccccceEee
Confidence 56888888765
No 3
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=16.49 E-value=16 Score=20.88 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=8.6
Q ss_pred eeeccceeeeh
Q psy14960 3 TIGCVKKTLYF 13 (250)
Q Consensus 3 ~~g~~~~~~~~ 13 (250)
+.|||+|++++
T Consensus 9 kcg~c~ktvy~ 19 (35)
T d1b8ta1 9 KCGVCQKAVYF 19 (35)
T ss_dssp ECTTTCCEECS
T ss_pred eeccccceEee
Confidence 56788888876
No 4
>g1uhe.1 b.52.2.1 (B:,A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Helicobacter pylori [TaxId: 210]}
Probab=12.28 E-value=44 Score=24.31 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=14.9
Q ss_pred cceeEEEEEEEccCCccc
Q psy14960 88 LPLYLDFYMFNWTNPQES 105 (250)
Q Consensus 88 ~~~~~~~Y~FNvTNpeef 105 (250)
.-.+=++.+||+||-++|
T Consensus 37 i~p~E~V~V~N~~NG~Rf 54 (121)
T g1uhe.1 37 LREGMKVEIVDVNNGERF 54 (121)
T ss_dssp CCTTCEEEEEETTTCCEE
T ss_pred CCCCCEEEEEECCCCeEE
Confidence 445669999999999994
No 5
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=11.32 E-value=63 Score=21.33 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=23.3
Q ss_pred cceeEEEEEEEccCCcccccCC-CCCCeEEEeccE
Q psy14960 88 LPLYLDFYMFNWTNPQESLSNP-NVKPIVVEVGPY 121 (250)
Q Consensus 88 ~~~~~~~Y~FNvTNpeefv~~~-g~kP~v~EvGPY 121 (250)
--..+++++-.++||.+ +... ..-|=|.|.|=|
T Consensus 46 GN~I~D~~~~~i~~p~~-l~~~L~~ipGVVe~GLF 79 (80)
T d1lk5a2 46 GNFIIDAKFPRIDDPLD-MEIELNTIPGVIENGIF 79 (80)
T ss_dssp SCEEEEEECSCCSCHHH-HHHHHHTSTTEEEESEE
T ss_pred CCEEEECCCCCCCCHHH-HHHHHHCCCCEEeeCcc
Confidence 44667788888899987 6432 457778888844
No 6
>d1ppya_ b.52.2.1 (A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Escherichia coli [TaxId: 562]}
Probab=10.13 E-value=57 Score=23.54 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=15.5
Q ss_pred CcceeEEEEEEEccCCccc
Q psy14960 87 TLPLYLDFYMFNWTNPQES 105 (250)
Q Consensus 87 p~~~~~~~Y~FNvTNpeef 105 (250)
..-.+=++.+||+||-++|
T Consensus 37 gi~~~EkV~V~Nv~NG~Rf 55 (118)
T d1ppya_ 37 GILENEAIDIWNVTNGKRF 55 (118)
T ss_dssp TCCTTCEEEEEETTTCCEE
T ss_pred CCCCCCEEEEEECCCCcEE
Confidence 4556679999999999983
No 7
>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}
Probab=9.16 E-value=61 Score=25.09 Aligned_cols=38 Identities=24% Similarity=0.440 Sum_probs=27.3
Q ss_pred ceeecccccccC-----cccccc-cccee--eEeccCCcccccccc
Q psy14960 48 SIVFGLLHVQLD-----KPYYCL-ALFQD--LTLRESSKSYRAWKH 85 (250)
Q Consensus 48 ~~~~~~~~~~~~-----~~~~~~-~~~~~--l~L~~gS~~y~~W~~ 85 (250)
.-|+=+.|.|+. |-++|. |.... +-++++|++|..|..
T Consensus 56 k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~ 101 (202)
T d1oi6a_ 56 RGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDS 101 (202)
T ss_dssp TTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEE
T ss_pred hheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeee
Confidence 357888998853 778887 44444 337789999988865
No 8
>d1jnda2 d.26.3.1 (A:279-370) Imaginal disc growth factor-2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.30 E-value=61 Score=22.11 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=7.3
Q ss_pred EeccEEEEE
Q psy14960 117 EVGPYVFRE 125 (250)
Q Consensus 117 EvGPYvY~E 125 (250)
-+|||.||.
T Consensus 71 ~~g~YAyr~ 79 (92)
T d1jnda2 71 RFGGIAYRP 79 (92)
T ss_dssp CSCEEEEEC
T ss_pred ceeeeEEec
Confidence 469999985
No 9
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}
Probab=7.55 E-value=52 Score=24.40 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=12.0
Q ss_pred EEEEEEccCCccccc
Q psy14960 93 DFYMFNWTNPQESLS 107 (250)
Q Consensus 93 ~~Y~FNvTNpeefv~ 107 (250)
+-++.|+|||-+ ++
T Consensus 144 ~a~~i~~TNPvd-v~ 157 (171)
T d1obba1 144 KAWYLQAANPIF-EG 157 (171)
T ss_dssp TCEEEECSSCHH-HH
T ss_pred CeEEEEECChHH-HH
Confidence 678999999998 54
No 10
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}
Probab=7.47 E-value=53 Score=24.02 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=11.9
Q ss_pred EEEEEEccCCccccc
Q psy14960 93 DFYMFNWTNPQESLS 107 (250)
Q Consensus 93 ~~Y~FNvTNpeefv~ 107 (250)
+-++.|+|||-+ ++
T Consensus 132 ~a~~i~vtNPvd-ii 145 (162)
T d1up7a1 132 NATIVNFTNPSG-HI 145 (162)
T ss_dssp CCEEEECSSSHH-HH
T ss_pred CeEEEEeCCHHH-HH
Confidence 678999999998 64
Done!