RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14960
         (250 letters)



>gnl|CDD|216316 pfam01130, CD36, CD36 family.  The CD36 family is thought to be a
           novel class of scavenger receptors. There is also
           evidence suggesting a possible role in signal
           transduction. CD36 is involved in cell adhesion.
          Length = 460

 Score =  169 bits (431), Expect = 5e-50
 Identities = 84/196 (42%), Positives = 116/196 (59%), Gaps = 10/196 (5%)

Query: 49  IVFG-LLHVQLDKPYYCLALFQDLTLRESSKSYRAWKHTTLPLYLDFYMFNWTNPQESLS 107
           +VFG LL V +        L + L LR  S ++ +W++  +PLY   Y+FN TNP+E + 
Sbjct: 9   LVFGILLGVVVFPDIVKSILKKQLVLRPGSDTFESWENPPVPLYFKVYLFNVTNPEE-VL 67

Query: 108 NPNVKPIVVEVGPYVFREVHEKLNLTWNANN-TVSYWQRRTWYFEPELSRGS-LSDEITN 165
           N   KPIV EVGPYV+RE  EK+N+T+N N  TVSY QRRT+ F+PELS G    D IT 
Sbjct: 68  NGGAKPIVEEVGPYVYREYREKVNVTFNDNGTTVSYKQRRTYVFDPELSVGGPEDDVITV 127

Query: 166 VNVVAVTIATMADQIHVKYSDLVKKIINMFLKNTEKKLYIKKTVRELLFDGYDDGVLDLM 225
            N+  +  A  A       S L++ +IN  LK+  +K ++ +TV ELLF GY+D +L L 
Sbjct: 128 PNIPMLGAAATAKS----MSPLLRLLINAALKSLGEKPFVTRTVGELLF-GYEDPLLSLA 182

Query: 226 KKLENLIKIPVQDRFA 241
           KK      +P  D+F 
Sbjct: 183 KKPPFNPDLP-FDKFG 197


>gnl|CDD|215244 PLN02445, PLN02445, anthranilate synthase component I.
          Length = 523

 Score = 30.4 bits (69), Expect = 0.97
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 198 NTEKKLYIKKTVRELLFDGYDDGVLDLMKKLENLIK 233
           + EKK Y+   VR   +   ++   D MK+LE L+ 
Sbjct: 167 HVEKKAYVIHWVRLDRYSSVEEAYEDGMKRLEALVS 202


>gnl|CDD|218970 pfam06278, DUF1032, Protein of unknown function (DUF1032).  This
           family consists of several conserved eukaryotic proteins
           of unknown function.
          Length = 565

 Score = 30.3 bits (68), Expect = 0.99
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 175 TMADQIHVKYSDLVKKIINMFLKNTEKKLYIKKTVRELLFDGYDDGVLDLMKKLE 229
            M   +   Y +LV++ +++F+ N++K  Y ++T        ++D +  L+++ E
Sbjct: 420 AMPSSL--SYEELVRRNVDLFIANSQK--YAQETELSQRVRDWEDSIQPLLQEQE 470


>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair
           protein.  This family contains a diverse range of
           structurally related DNA repair proteins. The
           superfamily is called the HhH-GPD family after its
           hallmark Helix-hairpin-helix and Gly/Pro rich loop
           followed by a conserved aspartate. This includes
           endonuclease III, EC:4.2.99.18 and MutY an A/G-specific
           adenine glycosylase, both have a C terminal 4Fe-4S
           cluster. The family also includes 8-oxoguanine DNA
           glycosylases. The methyl-CPG binding protein MBD4 also
           contains a related domain that is a thymine DNA
           glycosylase. The family also includes
           DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other
           members of the AlkA family.
          Length = 144

 Score = 28.9 bits (65), Expect = 1.6
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 204 YIKKTVRELLFDGYDDGVLDLMKKLENLIKIPVQDRFAASAVMAM 248
           YIK+  R L+ +GY   V   +++LE L+ +P   R+ A AV+  
Sbjct: 57  YIKELARILV-EGYLGLVPLDLEELEALLALPGVGRWTAEAVLLF 100


>gnl|CDD|182334 PRK10251, PRK10251, phosphopantetheinyltransferase component of
           enterobactin synthase multienzyme complex; Provisional.
          Length = 207

 Score = 27.9 bits (62), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 71  LTLRESSK--SYRAWKHTTLPLYLDFYMFNWTNPQESLSNPN 110
           LTL  S+K  +++A +  TL  +LD+ + +W   Q  +   N
Sbjct: 147 LTLAFSAKESAFKASEIQTLAGFLDYQIISWNKQQIIIHREN 188


>gnl|CDD|213816 TIGR03470, HpnH, hopanoid biosynthesis associated radical SAM
           protein HpnH.  The sequences represented by this model
           are members of the radical SAM superfamily of enzymes
           (pfam04055). These enzymes utilize an iron-sulfur redox
           cluster and S-adenosylmethionine to carry out diverse
           radical mediated reactions. The members of this clade
           are frequently found in the same locus as
           squalene-hopene cyclase (SHC, TIGR01507) and other genes
           associated with the biosynthesis of hopanoid natural
           products. The linkage between SHC and this radical SAM
           enzyme is strong; one is nearly always observed in the
           same genome where the other is found. A hopanoid
           biosynthesis locus was described in Zymomonas mobilis
           consisting of the genes HpnA-E and SHC (HpnF).
           Continuing past SHC are found a phosphorylase enzyme
           (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM
           enzyme (ZMO0874) which we name here HpnH. Granted, in Z.
           mobilis, HpnH is in a convergent orientation with
           respect to HpnA-G, but one gene beyond HpnH and running
           in the same convergent direction is IspH (ZM0875,
           4-hydroxy-3-methylbut-2-enyl diphosphate reductase), an
           essential enzyme of IPP biosynthesis and therefore
           essential for the biosynthesis of hopanoids. One of the
           well-described hopanoid intermediates is
           bacteriohopanetetrol. In the conversion from hopene
           several reactions must occur in the side chain for which
           a radical mechanism might be reasonable. These include
           the four (presumably anaerobic) hydroxylations and a
           methyl shift.
          Length = 318

 Score = 27.8 bits (62), Expect = 5.0
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 10/48 (20%)

Query: 66  ALFQDLTLRESSKSYRAWKHTTLPLYLDFYMFN-------WTNPQESL 106
            LF+++    + K +R   H+  PL+LDF   N       W NP  ++
Sbjct: 220 KLFREVLANGNGKRWRFN-HS--PLFLDFLAGNQQYECTPWGNPTRNV 264


>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase;
           Provisional.
          Length = 181

 Score = 27.5 bits (62), Expect = 5.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 160 SDEITNVNVVAVTIATMADQIHVKYSDLV 188
           +D + +   V   I  MAD+I    +D  
Sbjct: 13  ADCLVSAAEVEAAIDRMADEITADLADEN 41


>gnl|CDD|182167 PRK09956, PRK09956, hypothetical protein; Provisional.
          Length = 308

 Score = 27.4 bits (60), Expect = 8.4
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 18  LISICGVMVAILWPTVFRMLIEKSLEAYNTSIVFGLLHVQLDKPYYCLALFQDLTLRESS 77
           L  +C +    L PT F   IEKSL AY + +++ +     D   YC+   Q  +  E +
Sbjct: 36  LRKLCNLQTLRLEPTSF---IEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQ--SSAEKN 90

Query: 78  KSYRAWKHTT 87
            ++R  ++ T
Sbjct: 91  MAFRLMRYAT 100


>gnl|CDD|236609 PRK09653, eutD, phosphotransacetylase; Reviewed.
          Length = 324

 Score = 27.1 bits (61), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 154 LSRGSLSDEITNVNVVAVTIA 174
           LSRG   ++I   N+  +T A
Sbjct: 301 LSRGCSVEDI--YNLALITAA 319


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0821    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,773,218
Number of extensions: 1212326
Number of successful extensions: 1201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1197
Number of HSP's successfully gapped: 22
Length of query: 250
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 155
Effective length of database: 6,723,972
Effective search space: 1042215660
Effective search space used: 1042215660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (25.9 bits)