RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14960
(250 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 2e-08
Identities = 37/231 (16%), Positives = 75/231 (32%), Gaps = 71/231 (30%)
Query: 9 KTLY--FSVF---VLISICGVMVAILW---PTVFRMLIEKSLEAYNTSIVFGLLHVQLDK 60
+ ++ SVF I ++ ++W M++ L Y L+ Q +
Sbjct: 372 RKMFDRLSVFPPSAHIPT-ILLS-LIWFDVIKSDVMVVVNKLHKY------SLVEKQPKE 423
Query: 61 PYYCL-ALFQDLTLRESSK---------SYRAWK----HTTLPLYLDFYMFNW------- 99
+ +++ +L ++ ++ Y K +P YLD Y ++
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 100 TNPQESLSNPNVKPIVVEVGPYVFREVHEKLNLTWNAN---NTVSYWQRRTWYFEPELSR 156
E ++ +FR V L+ + + + W +
Sbjct: 484 IEHPERMT--------------LFRMVF--LDFRFLEQKIRHDSTAWN----------AS 517
Query: 157 GSLSDEITNVNVVAVTIATMADQIHVKYSDLVKKIINMFLKNTEKKLYIKK 207
GS+ + + + I KY LV I++ FL E+ L K
Sbjct: 518 GSILNTLQQLKFYKPYIC----DNDPKYERLVNAILD-FLPKIEENLICSK 563
Score = 28.7 bits (63), Expect = 2.6
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 23/63 (36%)
Query: 179 QIHVKYSDLVKKIINMFLKNTEKKLYIKKTVRELLFDGYDDGVLDLMK------KLENLI 232
+ +Y D++ + F+ N FD D V D+ K +++++I
Sbjct: 13 EHQYQYKDILSVFEDAFVDN---------------FDCKD--VQDMPKSILSKEEIDHII 55
Query: 233 KIP 235
Sbjct: 56 MSK 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 5e-06
Identities = 40/279 (14%), Positives = 83/279 (29%), Gaps = 109/279 (39%)
Query: 42 LEAYNTSIV-----------------FGLLHVQLDKPYYCLALF---QDLTLRESSKSYR 81
++ Y TS F +L + ++ P F + +RE
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE------ 1686
Query: 82 AWKHTTLPLYLDFYMFNWTNPQESLSNPNVKPIVVEVGPYVFREVHEKLNLTWN---ANN 138
Y +F + + K I Y FR L+ T A
Sbjct: 1687 --------NYSAM-IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 139 TVSY--WQR-RTWYFEP-----------ELS--------------------RGSL----- 159
+ ++ ++ P E + RG
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 160 -SDEI--TNVNVVAVTIATMA------------DQIHVKYSDLVKKIINMFLKNTEKKLY 204
DE+ +N ++A+ +A +++ + LV +I+N + N E + Y
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV-EIVN-Y--NVENQQY 1853
Query: 205 I----KKTVRELLFDGYDDGVLDLMK--KLENLIKIPVQ 237
+ + + + VL+ +K K++ +I++
Sbjct: 1854 VAAGDLRALDTVT------NVLNFIKLQKID-IIELQKS 1885
Score = 38.1 bits (88), Expect = 0.002
Identities = 45/249 (18%), Positives = 76/249 (30%), Gaps = 86/249 (34%)
Query: 19 ISIC--GVMVAIL------WPTVFRMLIEKSLEAYNTSIVFGL-LHVQLDKPYYCL--AL 67
+ G++ A+ W + F + + K++ ++F + + P L ++
Sbjct: 270 ATGHSQGLVTAVAIAETDSWES-FFVSVRKAIT-----VLFFIGVRCYEAYPNTSLPPSI 323
Query: 68 FQD-LTLRESSKSY----RAWKHTTLPLYLDFYMFNWTNPQE-----SLSN-PNVKPIVV 116
+D L E S + Y++ N P SL N K +VV
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVN--KTNSHLPAGKQVEISLVNGA--KNLVV 379
Query: 117 EVGPYVFREVHEKLNLTWNANNTVSYWQRRTWYFEPELSRGSLSDEITNVNVVAVTIATM 176
GP P+ SL N+ + +
Sbjct: 380 -SGP-------------------------------PQ----SL--YGLNLTLRKAKAPSG 401
Query: 177 ADQIHVKYSDLVKKIINMFLKNTEKKLYIKKTV---RELLFDGYDDGVLDLMKKLENL-- 231
DQ + +S+ K N FL + LL D DL+K +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLP-------V--ASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 232 --IKIPVQD 238
I+IPV D
Sbjct: 453 KDIQIPVYD 461
Score = 31.6 bits (71), Expect = 0.27
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 41/103 (39%)
Query: 149 YFEPELSRGSLSDEITNVNVVAVTIATMADQIHVKYSDLVKKIINMFLKNTEKKLYIKKT 208
YFE EL ++ Y LV +I + +T
Sbjct: 169 YFE-ELR-----------------------DLYQTYHVLVGDLIK----------FSAET 194
Query: 209 VRELLFDG------YDDGVLDLMKKLENLIKIPVQDRFAASAV 245
+ EL+ + G L++++ LEN P +D + +
Sbjct: 195 LSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYLLSIPI 236
Score = 31.6 bits (71), Expect = 0.27
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 162 EITNVN-----VV------AV-TIATMADQIHVKYSDLVKKIINMFLKNTEKKLY 204
EI N N V A+ T+ + + I ++ D+++ ++ L+ E L+
Sbjct: 1842 EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.002
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 225 MKKLENLIKIPVQDRFAASAVMAMTE 250
+KKL+ +K+ D A A+ A E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura
genomics, JCSG, protein structure initiative, PSI, joint
CE structural genomics; 2.32A {Escherichia coli} SCOP:
c.77.1.5
Length = 355
Score = 30.6 bits (70), Expect = 0.39
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 154 LSRGSLSDEITNVNVVAVTI--ATMADQIHVKYSDLVKKI 191
LSRG EI + + V LV+ +
Sbjct: 315 LSRGCSVQEI--IELALVAAVPRQTEVNRESSLQTLVEGL 352
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 29.4 bits (67), Expect = 1.1
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 154 LSRGSLSDEITNVNVVAVT 172
LSRG ++I V VA+T
Sbjct: 308 LSRGCSDEDI--VGAVAIT 324
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like
nucleotide-binding fold, structural genomics, BSGC
structure funded by NIH; 2.70A {Streptococcus pyogenes}
SCOP: c.77.1.5
Length = 337
Score = 29.1 bits (66), Expect = 1.2
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 154 LSRGSLSDEITNVNVVAVT 172
LSRGS +++I + +T
Sbjct: 312 LSRGSSAEDI--YKLAIIT 328
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure
funded by NIH, protein structure initiative, PSI; 2.75A
{Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Length = 329
Score = 29.0 bits (66), Expect = 1.3
Identities = 6/19 (31%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 154 LSRGSLSDEITNVNVVAVT 172
LSRG ++++ N+ +T
Sbjct: 308 LSRGCNAEDV--YNLALIT 324
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for
structural genomics of infectious diseases, csgid; HET:
TRS; 1.44A {Staphylococcus aureus subsp}
Length = 331
Score = 29.1 bits (66), Expect = 1.5
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 154 LSRGSLSDEITNVNVVAVT 172
LSRG +++ N+ +T
Sbjct: 309 LSRGCSIEDV--YNLSFIT 325
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 28.3 bits (64), Expect = 2.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 31 PTVFRMLIEKSLEAYNTS 48
PT++R LI++ L YN S
Sbjct: 324 PTIYRFLIKEDLSHYNFS 341
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 28.4 bits (64), Expect = 2.8
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 18 LISICGVMVAILWPTVFRMLIEKSLEAYNTS 48
+S + + P V+RML+++ L +Y
Sbjct: 292 TLSSYPIKSMMGAPIVYRMLLQQDLSSYKFP 322
>2hdi_A Colicin I receptor; outer membrane, iron transport, TONB BOX,
signal transductio colicin I receptor, receptor ligand,
membrane protein; HET: LDA; 2.50A {Escherichia coli}
PDB: 2hdf_A*
Length = 639
Score = 27.1 bits (60), Expect = 7.0
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 62 YYCLALFQDLTLRES-SKSYRAWKHTTLP----LYLDFYMFNWTNPQESLSNPNVKP--- 113
Y +T++ + +++A P L D+ + + + +P++KP
Sbjct: 375 YLVYNATDTVTVKGGWATAFKA------PSLLQLSPDWTSNSCRGACKIVGSPDLKPETS 428
Query: 114 IVVEVGPYVFREVHEKLNLTWNAN 137
E+G Y E + +
Sbjct: 429 ESWELGLYYMGEEGWLEGVESSVT 452
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.412
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,850,231
Number of extensions: 222200
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 22
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.2 bits)