RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14960
         (250 letters)



>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer
           protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}
          Length = 142

 Score = 26.0 bits (57), Expect = 3.3
 Identities = 2/18 (11%), Positives = 10/18 (55%)

Query: 186 DLVKKIINMFLKNTEKKL 203
             V +++ +F  + ++ +
Sbjct: 40  GFVSEVVTLFCDDADRII 57


>d1d9ca_ a.26.1.3 (A:) Interferon-gamma {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 121

 Score = 24.7 bits (54), Expect = 7.8
 Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 190 KIINMFLKNTEKKLYIKKTVRELLFDGYDDGVLDLMKKLENLIKIPVQD 238
           K+      N   +  +    +++     +    + ++  + LI+IPV D
Sbjct: 55  KLFENLKDNQVIQRSMDIIKQDMFQKFLNGSS-EKLEDFKKLIQIPVDD 102


>d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 127

 Score = 24.7 bits (54), Expect = 8.6
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 191 IINMFLK---NTEKKLYIK---KTVRELLFDGYDDGVLDLMKKLENLIKIPVQDR 239
           I++ + K   N +    I+   +T++E +   + +         E L    V D 
Sbjct: 50  IVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDL 104


>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein
           3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 103

 Score = 24.1 bits (52), Expect = 9.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 200 EKKLYIKKTVRELLFDGYDDGVLDLMKKLENL 231
           E+ L I K + +++     +G LDL+KKL + 
Sbjct: 12  EELLRIAKKLEKMVSRKKTEGALDLLKKLNSC 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 958,091
Number of extensions: 44408
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 7
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.9 bits)