BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14961
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/291 (64%), Positives = 220/291 (75%), Gaps = 29/291 (9%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALE--DDSSAKK 58
+I+WD T KEH+VTMP TWVMACAYAPSG +A GGLDNK +VY + + ++ +AKK
Sbjct: 88 VIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147
Query: 59 KTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPS 118
K+VA HT+++S C F NSD QILT SGD TCALWDVES QLLQSFHGH +++ LDLAPS
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207
Query: 119 ETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQ 178
ETGNTFVSG DK +WDMR+G CV Q+FE H+
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCV---------------------------QAFETHE 240
Query: 179 SDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF 238
SDVNSV+++PSGDA A+GSDDATCRL+DLRAD+EVA Y K+SI+FGA+SVDFS+SGRLLF
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300
Query: 239 AGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
AGYNDYTINVWD LK RV+ L GHENRVS L+VSPDGTAF SGSWD TLR
Sbjct: 301 AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/289 (48%), Positives = 185/289 (64%), Gaps = 30/289 (10%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+IIWD T K H++ + ++WVM CAYAPSG+ VA GGLDN ++Y + + + +
Sbjct: 90 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 149
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
+A HT ++SCC F + D QI+T SGD TCALWD+E+ Q +F GHTG++M L LAP
Sbjct: 150 LAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT- 207
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSD 180
FVSG+ D +WD+R G C Q +F GH+SD
Sbjct: 208 -RLFVSGACDASAKLWDVREGMCRQ---------------------------TFTGHESD 239
Query: 181 VNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 240
+N++ F P+G+A ATGSDDATCRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AG
Sbjct: 240 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 299
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
Y+D+ NVWD+LK R L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 300 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 348
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/289 (48%), Positives = 185/289 (64%), Gaps = 30/289 (10%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+IIWD T K H++ + ++WVM CAYAPSG+ VA GGLDN ++Y + + + +
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
+A HT ++SCC F + D QI+T SGD TCALWD+E+ Q +F GHTG++M L LAP
Sbjct: 139 LAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT- 196
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSD 180
FVSG+ D +WD+R G C Q +F GH+SD
Sbjct: 197 -RLFVSGACDASAKLWDVREGMCRQ---------------------------TFTGHESD 228
Query: 181 VNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 240
+N++ F P+G+A ATGSDDATCRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AG
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
Y+D+ NVWD+LK R L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/289 (48%), Positives = 185/289 (64%), Gaps = 30/289 (10%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+IIWD T K H++ + ++WVM CAYAPSG+ VA GGLDN ++Y + + + +
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
+A HT ++SCC F + D QI+T SGD TCALWD+E+ Q +F GHTG++M L LAP
Sbjct: 139 LAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT- 196
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSD 180
FVSG+ D +WD+R G C Q +F GH+SD
Sbjct: 197 -RLFVSGACDASAKLWDVREGMCRQ---------------------------TFTGHESD 228
Query: 181 VNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 240
+N++ F P+G+A ATGSDDATCRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AG
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
Y+D+ NVWD+LK R L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/289 (48%), Positives = 185/289 (64%), Gaps = 30/289 (10%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+IIWD T K H++ + ++WVM CAYAPSG+ VA GGLDN ++Y + + + +
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
+A HT ++SCC F + D QI+T SGD TCALWD+E+ Q +F GHTG++M L LAP
Sbjct: 139 LAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT- 196
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSD 180
FVSG+ D +WD+R G C Q +F GH+SD
Sbjct: 197 -RLFVSGACDASAKLWDVREGMCRQ---------------------------TFTGHESD 228
Query: 181 VNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 240
+N++ F P+G+A ATGSDDATCRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AG
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
Y+D+ NVWD+LK R L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/289 (48%), Positives = 185/289 (64%), Gaps = 30/289 (10%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+IIWD T K H++ + ++WVM CAYAPSG+ VA GGLDN ++Y + + + +
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
+A HT ++SCC F + D QI+T SGD TCALWD+E+ Q +F GHTG++M L LAP
Sbjct: 139 LAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT- 196
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSD 180
FVSG+ D +WD+R G C Q +F GH+SD
Sbjct: 197 -RLFVSGACDASAKLWDVREGMCRQ---------------------------TFTGHESD 228
Query: 181 VNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 240
+N++ F P+G+A ATGSDDATCRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AG
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
Y+D+ NVWD+LK R L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 168/307 (54%), Gaps = 45/307 (14%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK--- 57
+I+W+ LT K H++ + WVM CA+AP+G VA GGLD+ +++ ++ + D
Sbjct: 90 LIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV 149
Query: 58 KKTVATHTSFISCCIF-PNSDQQILTGSGDCTCALWDVESSQLLQSF-----HGHTGELM 111
+ + H + S C + P+ + +++TGSGD TC LWDV + Q + F GHT +++
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 112 DLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCV 171
L + S N F+SGS D V +WD+R T V
Sbjct: 210 SLSIN-SLNANMFISGSCDTTVRLWDLRI--------------------------TSRAV 242
Query: 172 QSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACY-----KKDSILFGAT 226
+++ GH+ D+NSVKF P G TGSDD TCRLFD+R ++ Y + D+ L T
Sbjct: 243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT 302
Query: 227 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL----MGHENRVSCLQVSPDGTAFSSG 282
SV FS+SGRLLFAGY++ VWD+L V +L HE R+SCL +S DG+A +G
Sbjct: 303 SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362
Query: 283 SWDTTLR 289
SWD L+
Sbjct: 363 SWDKNLK 369
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 137/295 (46%), Gaps = 29/295 (9%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
V A++P G +AS D V ++ + + +T+ H+S + F Q I
Sbjct: 101 VRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIA 155
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
+ S D T LW+ + QLLQ+ GH+ + + +P G T S S DK V +W+ R G
Sbjct: 156 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD--GQTIASASDDKTVKLWN-RNG 211
Query: 142 YCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF 186
+Q+ GH + + +DDK V +W+ R G +Q+ GH S VN V F
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF 270
Query: 187 HPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 246
P G +A+ SDD T +L++ S ++G V FS G+ + + +D T+
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTV 327
Query: 247 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYVQYL 301
+W+ + L GH + V + SPDG +S S D T++ + +Q L
Sbjct: 328 KLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 381
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 131/283 (46%), Gaps = 29/283 (10%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
V A++P G +AS D V ++ + + +T+ H+S + F Q I
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLW-----NRNGQHLQTLTGHSSSVWGVAFSPDGQTIA 360
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
+ S D T LW+ + QLLQ+ GH+ + + +P G T S S DK V +W+ R G
Sbjct: 361 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWN-RNG 416
Query: 142 YCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF 186
+Q+ GH + + +DDK V +W+ R G +Q+ GH S V V F
Sbjct: 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 475
Query: 187 HPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 246
P G +A+ SDD T +L++ S + G V FS G+ + + +D T+
Sbjct: 476 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTV 532
Query: 247 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+W+ + L GH + V + SPDG +S S D T++
Sbjct: 533 KLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 29/295 (9%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
V A++P G +AS D V ++ + + +T+ H+S + F Q I
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 114
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
+ S D T LW+ + QLLQ+ GH+ + + +P G T S S DK V +W+ R G
Sbjct: 115 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD--GQTIASASDDKTVKLWN-RNG 170
Query: 142 YCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF 186
+Q+ GH + + +DDK V +W+ R G +Q+ GH S V V F
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 229
Query: 187 HPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 246
P G +A+ SDD T +L++ S + G V F G+ + + +D T+
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNG---VAFRPDGQTIASASDDKTV 286
Query: 247 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYVQYL 301
+W+ + L GH + V + SPDG +S S D T++ +++Q L
Sbjct: 287 KLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL 340
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 136/295 (46%), Gaps = 29/295 (9%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
V A++P G +AS D V ++ + + +T+ H+S ++ F Q I
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVNGVAFRPDGQTIA 278
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
+ S D T LW+ + QLLQ+ GH+ + + +P G T S S DK V +W+ R G
Sbjct: 279 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD--GQTIASASDDKTVKLWN-RNG 334
Query: 142 YCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF 186
+Q+ GH + + +DDK V +W+ R G +Q+ GH S V V F
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 393
Query: 187 HPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 246
P G +A+ SDD T +L++ S ++G V FS + + + +D T+
Sbjct: 394 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTV 450
Query: 247 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYVQYL 301
+W+ + L GH + V + SPDG +S S D T++ + +Q L
Sbjct: 451 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 504
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 29/295 (9%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
V A++P G +AS D V ++ + + +T+ H+S + F Q I
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
+ S D T LW+ + QLLQ+ GH+ + + +P G T S S DK V +W+ R G
Sbjct: 74 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWN-RNG 129
Query: 142 YCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF 186
+Q+ GH + + +DDK V +W+ R G +Q+ GH S V V F
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 188
Query: 187 HPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTI 246
P G +A+ SDD T +L++ S + G V FS G+ + + +D T+
Sbjct: 189 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTV 245
Query: 247 NVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYVQYL 301
+W+ + L GH + V+ + PDG +S S D T++ + +Q L
Sbjct: 246 KLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL 299
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 121/260 (46%), Gaps = 24/260 (9%)
Query: 57 KKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLA 116
++ + H+S + F Q I + S D T LW+ + QLLQ+ GH+ + + +
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 66
Query: 117 PSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLVN 161
P G T S S DK V +W+ R G +Q+ GH + + +DDK V
Sbjct: 67 PD--GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSI 221
+W+ R G +Q+ GH S V V F P G +A+ SDD T +L++ S
Sbjct: 124 LWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 182
Query: 222 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 281
++G V FS G+ + + +D T+ +W+ + L GH + V + SPDG +S
Sbjct: 183 VWG---VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 238
Query: 282 GSWDTTLRDEESKNRYVQYL 301
S D T++ + +Q L
Sbjct: 239 ASDDKTVKLWNRNGQLLQTL 258
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 25/200 (12%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
V A++P G +AS D V ++ + + +T+ H+S + F DQ I
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDDQTIA 442
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
+ S D T LW+ + QLLQ+ GH+ + + +P G T S S DK V +W+ R G
Sbjct: 443 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVKLWN-RNG 498
Query: 142 YCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF 186
+Q+ GH + + +DDK V +W+ R G +Q+ GH S V V F
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 557
Query: 187 HPSGDAVATGSDDATCRLFD 206
P G +A+ S D T +L++
Sbjct: 558 SPDGQTIASASSDKTVKLWN 577
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 76
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 193
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 194 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 250
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 251 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 284
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 54 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 108
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 109 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 166
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 200
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 261 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 71
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 188
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 245
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 246 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 49 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 103
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 161
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 195
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 77
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 194
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 251
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 252 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 55 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 109
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 167
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 201
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 77
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 194
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 251
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 252 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 55 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 109
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 167
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 201
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 70
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 187
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 188 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 244
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 245 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 278
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 48 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 102
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 103 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 160
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 194
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 255 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 77
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 194
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 251
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 252 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 55 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 109
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 167
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 201
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 72
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 189
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 190 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 246
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 247 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 280
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 50 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 104
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 105 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 162
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 196
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 257 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 95
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 212
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 213 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 269
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 270 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 303
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 73 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 127
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 185
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 219
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 220 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 279
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 280 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 71
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 188
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 245
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 246 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 49 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 103
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 161
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 195
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 93
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 210
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 267
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 268 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 301
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 71 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 125
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 183
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 217
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 88
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 205
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 206 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 262
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 263 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 66 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 120
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 121 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 178
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 212
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 273 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 27/272 (9%)
Query: 60 TVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSE 119
T+A HT +S F + + + + S D +W + ++ GH +L D+A S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSS 78
Query: 120 TGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLVNIWD 164
N VS S DK + IWD+ +G C+++ +GH N + + D+ V IWD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 165 MRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK--DSIL 222
++TG C+++ H V++V F+ G + + S D CR++D + + C K D
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDN 195
Query: 223 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 282
+ V FS +G+ + A D T+ +WD K + GH+N C+ + + + G
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 252
Query: 283 SWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
W + E Y+ L I + QG T
Sbjct: 253 KW--IVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 20/207 (9%)
Query: 99 LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHH------- 151
L+ + GHT + + +P+ G S S+DKL+ IW G ++ GH
Sbjct: 18 LMFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 152 -----NLI---TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCR 203
NL+ +DDK + IWD+ +G C+++ +GH + V F+P + + +GS D + R
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 204 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 263
++D++ + S A V F+ G L+ + D +WD+ + L+
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 264 EN-RVSCLQVSPDGTAFSSGSWDTTLR 289
+N VS ++ SP+G + + D TL+
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLK 220
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 106
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ L++ H+ + + + G
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF--NRDG 164
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 198
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 259 SEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 191
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 248
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 249 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 44/243 (18%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+ IWD + ++ + +V C + P +++ SG D V ++ + + KT
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKT 147
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP--- 117
+ H+ +S F I++ S D C +WD S Q L++ L+D D P
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT-------LIDDDNPPVSF 200
Query: 118 ---SETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI------------------TD 156
S G ++ + D + +WD G C++++ GH N ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 157 DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACY 216
D LV IW+++T VQ +GH V S HP+ + +A+ + L DK + Y
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA---------LENDKTIKLY 311
Query: 217 KKD 219
K D
Sbjct: 312 KSD 314
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 106
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 164
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 198
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 67
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 184
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 185 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 241
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 242 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 275
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 45 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 99
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 100 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 157
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 191
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 125/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + S D +W + ++ GH +L D+
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 191
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 248
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 249 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 106
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 164
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 198
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
A K T+A HT +S F + + + + S D +W + ++ GH +L D+
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDV 74
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLV 160
A S N VS S DK + IWD+ +G C+++ +GH N + + D+ V
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK-- 218
IWD++TG C+++ H V++V F+ G + + S D CR++D + + C K
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLI 191
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
D + V FS +G+ + A D T+ +WD K + GH+N C+ + +
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FS 248
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
+ G W + E Y+ L I + QG T
Sbjct: 249 VTGGKW--IVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 37/231 (16%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+ IWD + ++ + +V C + P +++ SG D V ++ + + KT
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----TGKCLKT 147
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP--- 117
+ H+ +S F I++ S D C +WD S Q L++ L+D D P
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT-------LIDDDNPPVSF 200
Query: 118 ---SETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI------------------TD 156
S G ++ + D + +WD G C++++ GH N ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 157 DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGS--DDATCRLF 205
D LV IW+++T VQ +GH V S HP+ + +A+ + +D T +LF
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 106
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ + L++ H+ + + + G
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF--NRDG 164
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ VS S D L IWD +G C+++ LI DD V
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKT------LIDDD--------------------NPPV 198
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS-GRLLFAG 240
+ VKF P+G + + D T +L+D K + Y +FSV+ G+ + +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
D + +W+ V L GH + V P +S +
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 27/272 (9%)
Query: 60 TVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSE 119
T+A HT +S F + + + + S D +W + ++ GH +L D+A S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSS 78
Query: 120 TGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLVNIWD 164
N VS S DK + IWD+ +G C+++ +GH N + + D+ V IWD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 165 MRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK--DSIL 222
++TG C+++ H V++V F+ G + + S D CR++D + + C K D
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDN 195
Query: 223 FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSG 282
+ V FS +G+ + A D + +WD K + GH+N C+ + + + G
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFAN---FSVTGG 252
Query: 283 SWDTTLRDEESKNRYVQYLLRSRITKPTQGLT 314
W + E Y+ L I + QG T
Sbjct: 253 KW--IVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 20/207 (9%)
Query: 99 LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHH------- 151
L+ + GHT + + +P+ G S S+DKL+ IW G ++ GH
Sbjct: 18 LMFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 152 -----NLI---TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCR 203
NL+ +DDK + IWD+ +G C+++ +GH + V F+P + + +GS D + R
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 204 LFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 263
++D++ + S A V F+ G L+ + D +WD+ + L+
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSA--VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 264 EN-RVSCLQVSPDGTAFSSGSWDTTLR 289
+N VS ++ SP+G + + D L+
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNDLK 220
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 123/282 (43%), Gaps = 53/282 (18%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAK-KKTV 61
IW E +++ + A++ +++ S D + ++ D SS K KT+
Sbjct: 52 IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL 106
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
H++++ CC F I++GS D + +WDV++ L++ H+ + + + G
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF--NRDG 164
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSF---------------EGHHNL-ITDDKLVNIWDM 165
+ VS S D L IWD +G C+++ G + L T D + +WD
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY 224
Query: 166 RTGYCVQSFEGHQSDVNSVKFHPS---GDAVATGSDDATCRLFDLRADKEV--------- 213
G C++++ GH+++ + + S G + +GS+D +++L+ + V
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV 284
Query: 214 ----ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 251
AC+ ++I+ A A ND TI +W S
Sbjct: 285 VISTACHPTENIIASA-------------ALENDKTIKLWKS 313
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 125/273 (45%), Gaps = 35/273 (12%)
Query: 57 KKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLA 116
+K ++ H S ++ IF +++ S D T +WD E+ ++ GHT + D+
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF- 158
Query: 117 PSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGH-HNL--------------ITDDKLVN 161
+G S S+D + +WD + C+++ GH HN+ + DK +
Sbjct: 159 -DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLF---------DLRADKE 212
+W+++TGYCV++F GH+ V V+ + G +A+ S+D T R++ +LR +
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 213 V---------ACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 263
V + Y S G+ + G L +G D TI +WD + L+GH
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337
Query: 264 ENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 296
+N V + G S + D TLR + KN+
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 132/306 (43%), Gaps = 49/306 (16%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
V + P SV+ S D + V+ D ++T+ HT + F +S + +
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHSGKLLA 166
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
+ S D T LWD + + +++ HGH + + + P+ G+ VS S DK + +W+++TG
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTG 224
Query: 142 YCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF 186
YCV++F GH + ++D+ V +W + T C H+ V + +
Sbjct: 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 284
Query: 187 HPS--------------------GDAVATGSDDATCRLFDLRADK-EVACYKKDSILFGA 225
P G + +GS D T +++D+ + D+ + G
Sbjct: 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG- 343
Query: 226 TSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
V F G+ + + +D T+ VWD + +C + L HE+ V+ L +GS
Sbjct: 344 --VLFHSGGKFILSCADDKTLRVWDYKNKRCMKT--LNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 284 WDTTLR 289
D T++
Sbjct: 400 VDQTVK 405
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 39/221 (17%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
V + + P+G + S D + ++ + + KT H ++ + PN D ++
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEV----QTGYCVKTFTGHREWVRM-VRPNQDGTLI 249
Query: 82 TG-SGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP------------SET------GN 122
S D T +W V + + H + + AP SET G
Sbjct: 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309
Query: 123 TFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLVNIWDMRT 167
+SGS DK + +WD+ TG C+ + GH N + DDK + +WD +
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Query: 168 GYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLR 208
C+++ H+ V S+ FH + V TGS D T ++++ R
Sbjct: 370 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 173 SFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATS----V 228
+ GH+S V V FHP + + S+DAT +++D E +++ L G T +
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY----ETGDFER--TLKGHTDSVQDI 156
Query: 229 DFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 286
F SG+LL + D TI +WD +C R H GH++ VS + + P+G S S D
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMH--GHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 287 TLRDEESKNRY 297
T++ E + Y
Sbjct: 215 TIKMWEVQTGY 225
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 142/328 (43%), Gaps = 66/328 (20%)
Query: 20 TWVMACA-YAPSGSVVASGGLDNKVT-VYAIA-------LEDDSSAKKKTVATHTS---- 66
T V+ C ++ G +A+G NK T VY ++ L DDS+A K +TS
Sbjct: 64 TSVVCCVKFSNDGEYLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 67 ---FISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
+I F + + TG+ D +WD+E+ +++ GH ++ LD PS G+
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS--GDK 179
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITD---------------DKLVNIWDMRTG 168
VSGS D+ V IWD+RTG C + + T D+ V +WD TG
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 169 YCVQSFE-------GHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYK---- 217
+ V+ + GH+ V SV F G +V +GS D + +L++L+ + K
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 218 ----------KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 267
KD +L AT+ + + +G D + WD + L GH N V
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQN----DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 355
Query: 268 SCLQVS------PDGTAFSSGSWDTTLR 289
+ V+ P+ F++GS D R
Sbjct: 356 ISVAVANGSSLGPEYNVFATGSGDCKAR 383
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 109/253 (43%), Gaps = 23/253 (9%)
Query: 45 VYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFH 104
+Y AL + + HTS + C F N + + TG + T ++ V L+
Sbjct: 44 LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLS 102
Query: 105 GHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWD 164
+ D E NT S SSD + C +D+L+ IWD
Sbjct: 103 DDSAANKD-----PENLNTSSSPSSDLYIR------SVCFSPDGKFLATGAEDRLIRIWD 151
Query: 165 MRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFG 224
+ V +GH+ D+ S+ + PSGD + +GS D T R++DLR + C SI G
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTLSIEDG 208
Query: 225 ATSVDFSVS-GRLLFAGYNDYTINVWDSLKCCRVNHL-------MGHENRVSCLQVSPDG 276
T+V S G+ + AG D + VWDS V L GH++ V + + DG
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 277 TAFSSGSWDTTLR 289
+ SGS D +++
Sbjct: 269 QSVVSGSLDRSVK 281
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 28/191 (14%)
Query: 34 VASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWD 93
V SG D + V+ I ++ + H + + C + +++++G+ D +WD
Sbjct: 212 VVSGSRDATLRVWDI----ETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWD 265
Query: 94 VESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNL 153
E+ L + GHT + L G VSGS D + +WD+ TG C+ + GH +L
Sbjct: 266 PETETCLHTLQGHTNRVYSLQF----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321
Query: 154 ITD-------------DKLVNIWDMRTGYCVQSFEG---HQSDVNSVKFHPSGDAVATGS 197
+ D V IWD++TG C+Q+ +G HQS V ++F+ + V T S
Sbjct: 322 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSS 379
Query: 198 DDATCRLFDLR 208
DD T +L+DL+
Sbjct: 380 DDGTVKLWDLK 390
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 114/237 (48%), Gaps = 31/237 (13%)
Query: 68 ISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSG 127
I+C F + +I++GS D T +W + + L++ GHTG + + N +SG
Sbjct: 122 ITCLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISG 175
Query: 128 SSDKLVNIWDMRTGYCVQSFEGHHNLI-------------TDDKLVNIWDMRTGYCVQSF 174
S+D+ + +W+ TG C+ + GH + + + D + +WD+ TG C+
Sbjct: 176 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235
Query: 175 EGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS- 233
GH + V V++ G V +G+ D +++D + C L G T+ +S+
Sbjct: 236 MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE---TCL---HTLQGHTNRVYSLQF 287
Query: 234 -GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
G + +G D +I VWD ++ L GH++ S +++ + SG+ D+T++
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVK 342
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 28/188 (14%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+WD T H + V Y G V SG D V V+ + ++ T+
Sbjct: 223 VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVW----DPETETCLHTLQ 276
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGN 122
HT+ + F +++GS D + +WDVE+ + + GH ++L N
Sbjct: 277 GHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----N 330
Query: 123 TFVSGSSDKLVNIWDMRTGYCVQSFEG---HHNLIT-------------DDKLVNIWDMR 166
VSG++D V IWD++TG C+Q+ +G H + +T DD V +WD++
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
Query: 167 TGYCVQSF 174
TG +++
Sbjct: 391 TGEFIRNL 398
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
IW+ TQ + S+ + T V A + + + G D ++ V+ ++ K
Sbjct: 39 IWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY----NTGEKVVDFE 94
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESS-QLLQSFHGHTGELMDLDLAPSETG 121
H +I + +L+GS D T LW+ E++ L Q+F GH +M + P +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP- 153
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSF------EGHHNLI--------------TDDKLVN 161
+TF SG D+ V +W + G +F E N + +DD +
Sbjct: 154 STFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
IWD +T CV + EGH S+V+ FHP+ + +GS+D T ++++
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 99/257 (38%), Gaps = 34/257 (13%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP 117
KKT + + + F ++ +LT +W+ E+ ++S + + P
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS--------IQVTETP 57
Query: 118 SETG------NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TD 156
G N + GS D + +++ TG V FE H + I +D
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 157 DKLVNIWDMRTGYCV-QSFEGHQSDVNSVKFHPSGDAV-ATGSDDATCRLFDLRADKEVA 214
D V +W+ + + Q+FEGH+ V V F+P + A+G D T +++ L
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 215 CYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 272
G VD+ + +D TI +WD V L GH + VS
Sbjct: 178 TLTTGQER-GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 273 SPDGTAFSSGSWDTTLR 289
P SGS D TL+
Sbjct: 237 HPTLPIIISGSEDGTLK 253
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+W+ TQ + S+ + T V A + + + G D ++ V+ ++ K
Sbjct: 39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY----NTGEKVVDFE 94
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLL-QSFHGHTGELMDLDLAPSETG 121
H +I + +L+GS D T LW+ E++ L Q+F GH +M + P +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP- 153
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSF------EGHHNLI--------------TDDKLVN 161
+TF SG D+ V +W + G +F E N + +DD +
Sbjct: 154 STFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
IWD +T CV + EGH S+V+ FHP+ + +GS+D T ++++
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 103/270 (38%), Gaps = 34/270 (12%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP 117
KKT + + + F ++ +LT LW+ E+ ++S + + P
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS--------IQVTETP 57
Query: 118 SETG------NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TD 156
G N + GS D + +++ TG V FE H + I +D
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 157 DKLVNIWDMRTGYCV-QSFEGHQSDVNSVKFHPSGDAV-ATGSDDATCRLFDLRADKEVA 214
D V +W+ + + Q+FEGH+ V V F+P + A+G D T +++ L
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 215 CYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 272
G VD+ + +D TI +WD V L GH + VS
Sbjct: 178 TLTTGQER-GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 273 SPDGTAFSSGSWDTTLRDEESKNRYVQYLL 302
P SGS D TL+ S V+ L
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+W+ TQ + S+ + T V A + + + G D ++ V+ ++ K
Sbjct: 39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY----NTGEKVVDFE 94
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLL-QSFHGHTGELMDLDLAPSETG 121
H +I + +L+GS D T LW+ E++ L Q+F GH +M + P +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP- 153
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSF------EGHHNLI--------------TDDKLVN 161
+TF SG D+ V +W + G +F E N + +DD +
Sbjct: 154 STFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
IWD +T CV + EGH S+V+ FHP+ + +GS+D T ++++
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 103/270 (38%), Gaps = 34/270 (12%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP 117
KKT + + + F ++ +LT LW+ E+ ++S + + P
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS--------IQVTETP 57
Query: 118 SETG------NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TD 156
G N + GS D + +++ TG V FE H + I +D
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 157 DKLVNIWDMRTGYCV-QSFEGHQSDVNSVKFHPSGDAV-ATGSDDATCRLFDLRADKEVA 214
D V +W+ + + Q+FEGH+ V V F+P + A+G D T +++ L
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 215 CYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 272
G VD+ + +D TI +WD V L GH + VS
Sbjct: 178 TLTTGQER-GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 273 SPDGTAFSSGSWDTTLRDEESKNRYVQYLL 302
P SGS D TL+ S V+ L
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+W+ TQ + S+ + T V A + + + G D ++ V+ ++ K
Sbjct: 39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY----NTGEKVVDFE 94
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLL-QSFHGHTGELMDLDLAPSETG 121
H +I + +L+GS D T LW+ E++ L Q+F GH +M + P +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP- 153
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSF------EGHHNLI--------------TDDKLVN 161
+TF SG D+ V +W + G +F E N + +DD +
Sbjct: 154 STFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
IWD +T CV + EGH S+V+ FHP+ + +GS+D T ++++
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 99/257 (38%), Gaps = 34/257 (13%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP 117
KKT + + + F ++ +LT LW+ E+ ++S + + P
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS--------IQVTETP 57
Query: 118 SETG------NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TD 156
G N + GS D + +++ TG V FE H + I +D
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 157 DKLVNIWDMRTGYCV-QSFEGHQSDVNSVKFHPSGDAV-ATGSDDATCRLFDLRADKEVA 214
D V +W+ + + Q+FEGH+ V V F+P + A+G D T +++ L
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 215 CYKKDSILFGATSVDFSV--SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 272
G VD+ + +D TI +WD V L GH + VS
Sbjct: 178 TLTTGQER-GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 273 SPDGTAFSSGSWDTTLR 289
P SGS D TL+
Sbjct: 237 HPTLPIIISGSEDGTLK 253
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 70/253 (27%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
H+ + C L+ S D T LWDV + + Q F GH ++M +D+ + +
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI--DKKASM 115
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT---------------------DDKLVNI 162
+SGS DK + +W ++ G C+ + GH++ ++ +DK+V
Sbjct: 116 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 163 WDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSIL 222
W++ F GH S++N++ P G +A+ D L++L A K + +
Sbjct: 175 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
Query: 223 FG----------------------------------------------ATSVDFSVSGRL 236
F A S+ +S G+
Sbjct: 235 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 294
Query: 237 LFAGYNDYTINVW 249
LFAGY D I VW
Sbjct: 295 LFAGYTDNVIRVW 307
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 99 LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW-----DMRTGYCVQSFEGHHNL 153
L + GH G + L + + N +S S DK + W D + G V+SF+GH ++
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 154 ITD---------------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSD 198
+ D DK + +WD+ TG Q F GH+SDV SV + +GS
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 199 DATCRLFDLRADKEVACYKKD------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 252
D T +++ ++ + ++ + D SV+ ++ AG ND + W+
Sbjct: 122 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--IISAG-NDKMVKAWNLN 178
Query: 253 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
+ +GH + ++ L SPDGT +S D
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKD 211
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 28 APSGSVVASGGLDNKVTVYAIALEDDSSAKKK--TVATHTSFISCCIFPNSDQQILTGSG 85
+P G+++AS G D ++ ++ +A AKK T++ S PN + L +
Sbjct: 199 SPDGTLIASAGKDGEIMLWNLA------AKKAMYTLSAQDEVFSLAFSPN--RYWLAAAT 250
Query: 86 DCTCALWDVESSQLLQ----SFHGHT--GELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
++ ++ L+ F G++ E + LA S G T +G +D ++ +W +
Sbjct: 251 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 310
Query: 140 TG 141
T
Sbjct: 311 TA 312
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 70/253 (27%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
H+ + C L+ S D T LWDV + + Q F GH ++M +D+ + +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI--DKKASM 121
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT---------------------DDKLVNI 162
+SGS DK + +W ++ G C+ + GH++ ++ +DK+V
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 163 WDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSIL 222
W++ F GH S++N++ P G +A+ D L++L A K + +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 223 FG----------------------------------------------ATSVDFSVSGRL 236
F A S+ +S G+
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300
Query: 237 LFAGYNDYTINVW 249
LFAGY D I VW
Sbjct: 301 LFAGYTDNVIRVW 313
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 99 LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW-----DMRTGYCVQSFEGHHNL 153
L + GH G + L + + N +S S DK + W D + G V+SF+GH ++
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 154 ITD---------------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSD 198
+ D DK + +WD+ TG Q F GH+SDV SV + +GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 199 DATCRLFDLRADKEVACYKKD------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 252
D T +++ ++ + ++ + D SV+ ++ AG ND + W+
Sbjct: 128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--IISAG-NDKMVKAWNLN 184
Query: 253 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
+ +GH + ++ L SPDGT +S D
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 70/253 (27%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
H+ + C L+ S D T LWDV + + Q F GH ++M +D+ + +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI--DKKASM 121
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT---------------------DDKLVNI 162
+SGS DK + +W ++ G C+ + GH++ ++ +DK+V
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 163 WDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSIL 222
W++ F GH S++N++ P G +A+ D L++L A K + +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 223 FG----------------------------------------------ATSVDFSVSGRL 236
F A S+ +S G+
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300
Query: 237 LFAGYNDYTINVW 249
LFAGY D I VW
Sbjct: 301 LFAGYTDNVIRVW 313
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 99 LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW-----DMRTGYCVQSFEGHHNL 153
L + GH G + L + + N +S S DK + W D + G V+SF+GH ++
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 154 ITD---------------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSD 198
+ D DK + +WD+ TG Q F GH+SDV SV + +GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 199 DATCRLFDLRADKEVACYKKD------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 252
D T +++ ++ + ++ + D SV+ ++ AG ND + W+
Sbjct: 128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--IISAG-NDKMVKAWNLN 184
Query: 253 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
+ +GH + ++ L SPDGT +S D
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 28 APSGSVVASGGLDNKVTVYAIALEDDSSAKKK--TVATHTSFISCCIFPNSDQQILTGSG 85
+P G+++AS G D ++ ++ +A AKK T++ S PN + L +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLA------AKKAMYTLSAQDEVFSLAFSPN--RYWLAAAT 256
Query: 86 DCTCALWDVESSQLLQ----SFHGHT--GELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
++ ++ L+ F G++ E + LA S G T +G +D ++ +W +
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Query: 140 TG 141
T
Sbjct: 317 TA 318
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 70/253 (27%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
H+ + C L+ S D T LWDV + + Q F GH ++M +D+ + +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI--DKKASM 121
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT---------------------DDKLVNI 162
+SGS DK + +W ++ G C+ + GH++ ++ +DK+V
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 163 WDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSIL 222
W++ F GH S++N++ P G +A+ D L++L A K + +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 223 FG----------------------------------------------ATSVDFSVSGRL 236
F A S+ +S G+
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300
Query: 237 LFAGYNDYTINVW 249
LFAGY D I VW
Sbjct: 301 LFAGYTDNVIRVW 313
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 99 LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW-----DMRTGYCVQSFEGHHNL 153
L + GH G + L + + N +S S DK + W D + G V+SF+GH ++
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 154 ITD---------------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSD 198
+ D DK + +WD+ TG Q F GH+SDV SV + +GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 199 DATCRLFDLRADKEVACYKKD------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 252
D T +++ ++ + ++ + D SV+ ++ AG ND + W+
Sbjct: 128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--IISAG-NDKMVKAWNLN 184
Query: 253 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
+ +GH + ++ L SPDGT +S D
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 28 APSGSVVASGGLDNKVTVYAIALEDDSSAKKK--TVATHTSFISCCIFPNSDQQILTGSG 85
+P G+++AS G D ++ ++ +A AKK T++ S PN + L +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLA------AKKAMYTLSAQDEVFSLAFSPN--RYWLAAAT 256
Query: 86 DCTCALWDVESSQLLQ----SFHGHT--GELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
++ ++ L+ F G++ E + LA S G T +G +D ++ +W +
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Query: 140 TG 141
T
Sbjct: 317 TA 318
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 70/253 (27%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
H+ + C L+ S D T LWDV + + Q F GH ++M +D+ + +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI--DKKASM 121
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT---------------------DDKLVNI 162
+SGS DK + +W ++ G C+ + GH++ ++ +DK+V
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 163 WDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSIL 222
W++ F GH S++N++ P G +A+ D L++L A K + +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 223 FG----------------------------------------------ATSVDFSVSGRL 236
F A S+ +S G+
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQT 300
Query: 237 LFAGYNDYTINVW 249
LFAGY D I VW
Sbjct: 301 LFAGYTDNVIRVW 313
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 99 LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW-----DMRTGYCVQSFEGHHNL 153
L + GH G + L + + N +S S DK + W D + G V+SF+GH ++
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 154 ITD---------------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSD 198
+ D DK + +WD+ TG Q F GH+SDV SV + +GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 199 DATCRLFDLRADKEVACYKKD------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 252
D T +++ ++ + ++ + D SV+ ++ AG ND + W+
Sbjct: 128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--IISAG-NDKMVKAWNLN 184
Query: 253 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
+ +GH + ++ L SPDGT +S D
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 28 APSGSVVASGGLDNKVTVYAIALEDDSSAKKK--TVATHTSFISCCIFPNSDQQILTGSG 85
+P G+++AS G D ++ ++ +A AKK T++ S PN + L +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLA------AKKAMYTLSAQDEVFSLAFSPN--RYWLAAAT 256
Query: 86 DCTCALWDVESSQLLQ----SFHGHTG--ELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
++ ++ L+ F G++ E + LA S G T +G +D ++ +W +
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Query: 140 TG 141
T
Sbjct: 317 TA 318
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 72/254 (28%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
H+ + C L+ S D T LWDV + + Q F GH ++ +D+ + +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI--DKKASX 121
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT---------------------DDKLVNI 162
+SGS DK + +W ++ G C+ + GH++ ++ +DK V
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 163 WDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADK----------- 211
W++ F GH S++N++ P G +A+ D L++L A K
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV 240
Query: 212 ------------------------------------EVACYKKDSILFGATSVDFSVSGR 235
E A Y K + A S+ +S G+
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH-AVSLAWSADGQ 299
Query: 236 LLFAGYNDYTINVW 249
LFAGY D I VW
Sbjct: 300 TLFAGYTDNVIRVW 313
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 99 LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW-----DMRTGYCVQSFEGHHNL 153
L + GH G + L + + N +S S DK + W D + G V+SF+GH ++
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQP-NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 154 ITD---------------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSD 198
+ D DK + +WD+ TG Q F GH+SDV SV + +GS
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 199 DATCRLFDLRADKEVACYKKD------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSL 252
D T +++ ++ + ++ + D SV+ ++ AG ND + W+
Sbjct: 128 DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--IISAG-NDKXVKAWNLN 184
Query: 253 KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
+ +GH + ++ L SPDGT +S D
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKD 217
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 28 APSGSVVASGGLDNKVTVYAIALEDDSSAKKK--TVATHTSFISCCIFPNSDQQILTGSG 85
+P G+++AS G D ++ ++ +A AKK T++ S PN + L +
Sbjct: 205 SPDGTLIASAGKDGEIXLWNLA------AKKAXYTLSAQDEVFSLAFSPN--RYWLAAAT 256
Query: 86 DCTCALWDVESSQLLQ----SFHGHT--GELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
++ ++ L+ F G++ E + LA S G T +G +D ++ +W +
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVX 316
Query: 140 TG 141
T
Sbjct: 317 TA 318
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 123/304 (40%), Gaps = 43/304 (14%)
Query: 24 ACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTG 83
AC ++ G +AS G D + V+ + ++ K + H + CC F + D I T
Sbjct: 628 AC-FSQDGQRIASCGADKTLQVF----KAETGEKLLDIKAHEDEVLCCAFSSDDSYIATC 682
Query: 84 SGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYC 143
S D +WD + +L+ ++ H+ ++ +GS+D + +WD+ C
Sbjct: 683 SADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 742
Query: 144 VQSFEGHHNLIT------DDKL---------VNIWDMRTGYCVQSF---------EGHQS 179
+ GH N + DD+L + +WD+R+ +S E
Sbjct: 743 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 802
Query: 180 DVNSV----KFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSV----DFS 231
DV + + GD + + + LFD+ +A I G S DFS
Sbjct: 803 DVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLA-----EIHTGHHSTIQYCDFS 856
Query: 232 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDE 291
L + Y + +W+ +V GH + V + SPDG++F + S D T+R
Sbjct: 857 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Query: 292 ESKN 295
E+K
Sbjct: 917 ETKK 920
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 105/269 (39%), Gaps = 46/269 (17%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVAT---HTSFISCCIFPNSDQ 78
V+ CA++ S +A+ D KV ++ SA K V T H+ ++CC F N
Sbjct: 667 VLCCAFSSDDSYIATCSADKKVKIW-------DSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 79 QIL--TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW 136
+L TGS D LWD+ + + GHT + +P + S S+D + +W
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD--ELLASCSADGTLRLW 777
Query: 137 DMRTGY---------------------------CVQSFEGHHNLITDDKLVNIWDMRT-G 168
D+R+ C S +G ++ V ++D+ T G
Sbjct: 778 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 837
Query: 169 YCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVA-CYKKDSILFGATS 227
+ GH S + F P L+++ + +VA C S + G
Sbjct: 838 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG--- 894
Query: 228 VDFSVSGRLLFAGYNDYTINVWDSLKCCR 256
V FS G +D TI VW++ K C+
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVWETKKVCK 923
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 31/210 (14%)
Query: 17 MPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDD----SSAKKKTVATHTSFISCCI 72
+P V C +P VA G D + + I L ++ S K H F +
Sbjct: 966 LPEAQVSCCCLSPHLEYVAFGDEDGAIKI--IELPNNRVFSSGVGHKKAVRHIQFTA--- 1020
Query: 73 FPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKL 132
+ +++ S D +W+ ++ + H + D L + +S S D
Sbjct: 1021 ---DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD---SRLLSWSFDGT 1073
Query: 133 VNIWDMRTGYCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGH 177
V +W++ TG + F H + + DK IW + +GH
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1133
Query: 178 QSDVNSVKFHPSGDAVATGSDDATCRLFDL 207
V F G +ATG D+ R++++
Sbjct: 1134 NGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 83/236 (35%), Gaps = 61/236 (25%)
Query: 68 ISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSG 127
+SCC + + G D + ++ ++++ S GH + + + G T +S
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF--TADGKTLISS 1028
Query: 128 SSDKLVNIWDMRTGYCVQSFEGHHNLITDDKL--------------VNIWDMRTGYCVQS 173
S D ++ +W+ +TG V + H + D +L V +W++ TG +
Sbjct: 1029 SEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD 1087
Query: 174 FEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS 233
F HQ V S S DAT F +TS D
Sbjct: 1088 FTCHQGTVLSCAI----------SSDAT--------------------KFSSTSAD---- 1113
Query: 234 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
T +W ++ L GH V C S DG ++G + +R
Sbjct: 1114 ----------KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIR 1159
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 17/154 (11%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+W+ +T E T V++CA + + +S D +++ D + +
Sbjct: 1076 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF----DLLSPLHELK 1131
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHG---------HTGELMDL 113
H + C F + TG + +W+V QLL S H G + D+
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1191
Query: 114 DLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSF 147
+P T VS + W++ TG Q+F
Sbjct: 1192 CFSPD--SKTLVSAGG--YLKWWNVATGDSSQTF 1221
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 123/304 (40%), Gaps = 43/304 (14%)
Query: 24 ACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTG 83
AC ++ G +AS G D + V+ + ++ K + H + CC F + D I T
Sbjct: 621 AC-FSQDGQRIASCGADKTLQVF----KAETGEKLLDIKAHEDEVLCCAFSSDDSYIATC 675
Query: 84 SGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYC 143
S D +WD + +L+ ++ H+ ++ +GS+D + +WD+ C
Sbjct: 676 SADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735
Query: 144 VQSFEGHHNLIT------DDKL---------VNIWDMRTGYCVQSF---------EGHQS 179
+ GH N + DD+L + +WD+R+ +S E
Sbjct: 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPE 795
Query: 180 DVNSV----KFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSV----DFS 231
DV + + GD + + + LFD+ +A I G S DFS
Sbjct: 796 DVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLA-----EIHTGHHSTIQYCDFS 849
Query: 232 VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDE 291
L + Y + +W+ +V GH + V + SPDG++F + S D T+R
Sbjct: 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Query: 292 ESKN 295
E+K
Sbjct: 910 ETKK 913
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 105/269 (39%), Gaps = 46/269 (17%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVAT---HTSFISCCIFPNSDQ 78
V+ CA++ S +A+ D KV ++ SA K V T H+ ++CC F N
Sbjct: 660 VLCCAFSSDDSYIATCSADKKVKIW-------DSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 79 QIL--TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW 136
+L TGS D LWD+ + + GHT + +P + S S+D + +W
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD--ELLASCSADGTLRLW 770
Query: 137 DMRTGY---------------------------CVQSFEGHHNLITDDKLVNIWDMRT-G 168
D+R+ C S +G ++ V ++D+ T G
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830
Query: 169 YCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVA-CYKKDSILFGATS 227
+ GH S + F P L+++ + +VA C S + G
Sbjct: 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG--- 887
Query: 228 VDFSVSGRLLFAGYNDYTINVWDSLKCCR 256
V FS G +D TI VW++ K C+
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVWETKKVCK 916
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 31/210 (14%)
Query: 17 MPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDD----SSAKKKTVATHTSFISCCI 72
+P V C +P VA G D + + I L ++ S K H F +
Sbjct: 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKI--IELPNNRVFSSGVGHKKAVRHIQFTA--- 1013
Query: 73 FPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKL 132
+ +++ S D +W+ ++ + H + D L + +S S D
Sbjct: 1014 ---DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD---SRLLSWSFDGT 1066
Query: 133 VNIWDMRTGYCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGH 177
V +W++ TG + F H + + DK IW + +GH
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126
Query: 178 QSDVNSVKFHPSGDAVATGSDDATCRLFDL 207
V F G +ATG D+ R++++
Sbjct: 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 83/236 (35%), Gaps = 61/236 (25%)
Query: 68 ISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSG 127
+SCC + + G D + ++ ++++ S GH + + + G T +S
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF--TADGKTLISS 1021
Query: 128 SSDKLVNIWDMRTGYCVQSFEGHHNLITDDKL--------------VNIWDMRTGYCVQS 173
S D ++ +W+ +TG V + H + D +L V +W++ TG +
Sbjct: 1022 SEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD 1080
Query: 174 FEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS 233
F HQ V S S DAT F +TS D
Sbjct: 1081 FTCHQGTVLSCAI----------SSDAT--------------------KFSSTSAD---- 1106
Query: 234 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
T +W ++ L GH V C S DG ++G + +R
Sbjct: 1107 ----------KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIR 1152
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 17/154 (11%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+W+ +T E T V++CA + + +S D +++ D + +
Sbjct: 1069 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF----DLLSPLHELK 1124
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHG---------HTGELMDL 113
H + C F + TG + +W+V QLL S H G + D+
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184
Query: 114 DLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSF 147
+P T VS + W++ TG Q+F
Sbjct: 1185 CFSPD--SKTLVSAGG--YLKWWNVATGDSSQTF 1214
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 111/297 (37%), Gaps = 71/297 (23%)
Query: 21 WVMACAYAPS-GSVVASGGLDNKVTVYAIAL-EDDSSAKKKTVATHTSFISCCIFPNSDQ 78
WV A P ++ S D + ++ + E + ++ + H+ F+S + + Q
Sbjct: 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 99
Query: 79 QILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM 138
L+GS D T LWD+ + + F GHT ++ L +A S VSGS DK + +W+
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV--LSVAFSSDNRQIVSGSRDKTIKLWNT 157
Query: 139 RT--GYCVQSFEGHHNLIT-----------------DDKLVNIWDMRTGYCVQSFEGHQS 179
Y VQ E H ++ DKLV +W++ + GH
Sbjct: 158 LGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216
Query: 180 DVNSVKFHPSGDAVATGSDDATCRLFDLRADKEV-----------ACYKKDSILFGA--- 225
+N+V P G A+G D L+DL K + C+ + A
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG 276
Query: 226 ---------------------------------TSVDFSVSGRLLFAGYNDYTINVW 249
TS+ +S G+ LFAGY D + VW
Sbjct: 277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 24/213 (11%)
Query: 95 ESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM---RTGYCV--QSFEG 149
E L + GH G + + P + + +S S DK + +W + T Y + ++ G
Sbjct: 26 EQMTLRGTLKGHNGWVTQIATTP-QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 84
Query: 150 HHNLITD---------------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVA 194
H + ++D D + +WD+ TG + F GH DV SV F +
Sbjct: 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 144
Query: 195 TGSDDATCRLFD-LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 253
+GS D T +L++ L K + S + S ++ + D + VW+
Sbjct: 145 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 254 C-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
C + NH+ GH ++ + VSPDG+ +SG D
Sbjct: 205 CKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKD 236
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 173 SFEGHQSDVNSVKFHPS-GDAVATGSDDATCRLFDLRADKEVACYKKDSILFGA---TSV 228
+ +GH V + P D + + S D T ++ L D+ + ++ + + V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 229 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 288
S G+ +G D T+ +WD +GH V + S D SGS D T+
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 289 R 289
+
Sbjct: 153 K 153
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 28 APSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDC 87
+P GS+ ASGG D + ++ + + T+ + C PN + L +
Sbjct: 224 SPDGSLCASGGKDGQAMLWDL----NEGKHLYTLDGGDIINALCFSPN--RYWLCAATGP 277
Query: 88 TCALWDVESS-------QLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRT 140
+ +WD+E Q + S LA S G T +G +D LV +W +
Sbjct: 278 SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337
Query: 141 G 141
G
Sbjct: 338 G 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 111/297 (37%), Gaps = 71/297 (23%)
Query: 21 WVMACAYAPS-GSVVASGGLDNKVTVYAIAL-EDDSSAKKKTVATHTSFISCCIFPNSDQ 78
WV A P ++ S D + ++ + E + ++ + H+ F+S + + Q
Sbjct: 17 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 76
Query: 79 QILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM 138
L+GS D T LWD+ + + F GHT ++ L +A S VSGS DK + +W+
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV--LSVAFSSDNRQIVSGSRDKTIKLWNT 134
Query: 139 RT--GYCVQSFEGHHNLIT-----------------DDKLVNIWDMRTGYCVQSFEGHQS 179
Y VQ E H ++ DKLV +W++ + GH
Sbjct: 135 LGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 193
Query: 180 DVNSVKFHPSGDAVATGSDDATCRLFDLRADKEV-----------ACYKKDSILFGA--- 225
+N+V P G A+G D L+DL K + C+ + A
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG 253
Query: 226 ---------------------------------TSVDFSVSGRLLFAGYNDYTINVW 249
TS+ +S G+ LFAGY D + VW
Sbjct: 254 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 24/213 (11%)
Query: 95 ESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM---RTGYCV--QSFEG 149
E L + GH G + + P + + +S S DK + +W + T Y + ++ G
Sbjct: 3 EQMTLRGTLKGHNGWVTQIATTP-QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61
Query: 150 HHNLITD---------------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVA 194
H + ++D D + +WD+ TG + F GH DV SV F +
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 195 TGSDDATCRLFD-LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLK 253
+GS D T +L++ L K + S + S ++ + D + VW+
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 254 C-CRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
C + NH+ GH ++ + VSPDG+ +SG D
Sbjct: 182 CKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKD 213
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 173 SFEGHQSDVNSVKFHPS-GDAVATGSDDATCRLFDLRADKEVACYKKDSILFGA---TSV 228
+ +GH V + P D + + S D T ++ L D+ + ++ + + V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 229 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 288
S G+ +G D T+ +WD +GH V + S D SGS D T+
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 289 R 289
+
Sbjct: 130 K 130
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 28 APSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDC 87
+P GS+ ASGG D + ++ + + T+ + C PN + L +
Sbjct: 201 SPDGSLCASGGKDGQAMLWDL----NEGKHLYTLDGGDIINALCFSPN--RYWLCAATGP 254
Query: 88 TCALWDVESS-------QLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRT 140
+ +WD+E Q + S LA S G T +G +D LV +W +
Sbjct: 255 SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 314
Query: 141 G 141
G
Sbjct: 315 G 315
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 124/303 (40%), Gaps = 41/303 (13%)
Query: 24 ACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTG 83
AC ++ G +AS G D + V+ + ++ K + H + CC F D+ I T
Sbjct: 627 AC-FSEDGQRIASCGADKTLQVF----KAETGEKLLEIKAHEDEVLCCAFSTDDRFIATC 681
Query: 84 SGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYC 143
S D +W+ + +L+ ++ H+ ++ S +GSSD + +WD+ C
Sbjct: 682 SVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKEC 741
Query: 144 VQSFEGHHNLIT------DDKL---------VNIWDM-----RTGYCVQSF----EGHQS 179
+ GH N + DDKL + +WD R V+ F E Q
Sbjct: 742 RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQE 801
Query: 180 DVNSV----KFHPSGDAVATGSDDATCRLFDLRAD---KEVACYKKDSILFGATSVDFSV 232
D+ + + G + + + LFD+ E+ +I + DFS
Sbjct: 802 DMEVIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLLGEIHTGHHSTIQY----CDFSP 856
Query: 233 SGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEE 292
L + Y + +W++ +V GH + V + SPDG++F + S D T+R E
Sbjct: 857 QNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE 916
Query: 293 SKN 295
+K
Sbjct: 917 TKK 919
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 97/235 (41%), Gaps = 34/235 (14%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGS--VVASGGLDNKVTVYAIALEDDSSAKKKT 60
IW+ +T H+ + V C + S ++A+G D + ++ + + + T
Sbjct: 689 IWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL----NQKECRNT 744
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQ------LLQSFHGHTGELMDLD 114
+ HT+ ++ C F D+ + + S D T LWD S+ + Q F D++
Sbjct: 745 MFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDME 804
Query: 115 LAP-----SETGNTFVSGSSDKLVNIWDMRT-GYCVQSFEGHHNLIT------------- 155
+ S G + + +K+ ++D+ T G + GHH+ I
Sbjct: 805 VIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVV 863
Query: 156 --DDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLR 208
V +W+ + V GH S V+ V F P G + T SDD T RL++ +
Sbjct: 864 ALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 116/290 (40%), Gaps = 44/290 (15%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIAL-EDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
+ C ++P + ++ Y + L DS +K H S++ +F
Sbjct: 849 IQYCDFSPQNHLAVVA-----LSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 81 LTGSGDCTCALWDVE-----SSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNI 135
LT S D T LW+ + S+ +L+ ++D+ E ++ + + +
Sbjct: 904 LTSSDDQTIRLWETKKVCKNSAVMLKQ---------EVDVVFQENEVMVLAVDHIRRLQL 954
Query: 136 WDMRTG---YCVQS------FEGHHNLIT---DDKLVNIWDMRTGYCVQSFEGHQSDVNS 183
+ RTG Y ++ H I ++ + I ++ QS H+ V
Sbjct: 955 INGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWH 1014
Query: 184 VKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFG--ATSVDFSV--SGRLLFA 239
++F + + SDDA ++++ + DK + L G T DF + + RLL
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQLDKCI-------FLRGHQETVKDFRLLKNSRLLSW 1067
Query: 240 GYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ D T+ VW+ + + + H+ V +S D T FSS S D T +
Sbjct: 1068 SF-DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAK 1116
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 80/236 (33%), Gaps = 61/236 (25%)
Query: 68 ISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSG 127
+SCC Q I G + + ++ ++++ QS H + + E T +S
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADE--KTLISS 1027
Query: 128 SSDKLVNIWDMRTGYCVQSFEGHHNLITDDKL--------------VNIWDMRTGYCVQS 173
S D + +W+ + C+ GH + D +L V +W++ TG +
Sbjct: 1028 SDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKD 1086
Query: 174 FEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS 233
F HQ V S S DAT F +TS D
Sbjct: 1087 FVCHQGTVLSCDI----------SHDAT--------------------KFSSTSAD---- 1112
Query: 234 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
T +W ++ L GH V C S D T ++G + +R
Sbjct: 1113 ----------KTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 27/203 (13%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALED--DSSAKKKTVATHTSFISCCIFPNSDQQ 79
V C +P +A G + + + + S + K H F + ++
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTA------DEKT 1023
Query: 80 ILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
+++ S D +W+ + + + GH + D L + + +S S D V +W++
Sbjct: 1024 LISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKN---SRLLSWSFDGTVKVWNII 1079
Query: 140 TGYCVQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSV 184
TG + F H + + DK IW + GH V
Sbjct: 1080 TGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCS 1139
Query: 185 KFHPSGDAVATGSDDATCRLFDL 207
F +ATG D+ R++++
Sbjct: 1140 AFSVDSTLLATGDDNGEIRIWNV 1162
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 16/153 (10%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+W+ +T KE V++C + + +S D +++ D +
Sbjct: 1075 VWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF----DLLLPLHELR 1130
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQ-----SFHG---HTGELMDLD 114
H + C F + TG + +W+V + +LL S G H G + DL
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLC 1190
Query: 115 LAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSF 147
+P G +S + W++ TG Q+F
Sbjct: 1191 FSPD--GKMLISAGG--YIKWWNVVTGESSQTF 1219
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 67/255 (26%)
Query: 59 KTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPS 118
+ + H++F+S N+ ++ S D + LW++++ Q F GHT +++ + +P
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 119 ETGNTFVSGSSDKLVNIWDMRTGYCVQSF-EGHHN---------------LITD---DKL 159
VSG D + +W+++ G C+ + G H +I D L
Sbjct: 121 N--RQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 160 VNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDL---RADKEVA-- 214
V +WD+ TG V +GH + V SV P G A+ D RL+DL A E+A
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG 237
Query: 215 ------CYKKD----------------------------------SILFGATSVDFSVSG 234
C+ + I+ S+ +S G
Sbjct: 238 APINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADG 297
Query: 235 RLLFAGYNDYTINVW 249
L++GY D I VW
Sbjct: 298 STLYSGYTDNVIRVW 312
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 28/212 (13%)
Query: 105 GHTGELMDLDLAPS-ETGNTFVSGSSDKLVNIW----DMRTGYCV-----QSFEGHHNLI 154
GH G + L + ET VS S DK + W D + C + EGH +
Sbjct: 11 GHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFV 70
Query: 155 TDDKLVN---------------IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDD 199
+D L N +W+++ G C F GH DV SV F P + +G D
Sbjct: 71 SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRD 130
Query: 200 ATCRLFDLRADKEVACYKKDSILFGATSVDFSVS--GRLLFAGYNDYTINVWDSLKCCRV 257
R+++++ + + + + + V FS S ++ +G D + VWD V
Sbjct: 131 NALRVWNVKGEC-MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 258 NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
L GH N V+ + VSPDG+ +S D R
Sbjct: 190 TDLKGHTNYVTSVTVSPDGSLCASSDKDGVAR 221
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 118 SETGNTFVSGSSDKLVNIWDM----RTGYCV---QSFEGHHNLITD-------------- 156
+E +SGS DK V IW + + GY ++ GH++ ++D
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 157 -DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDL-------R 208
DK + +WD+RTG + F GHQS+V SV F P + + + +L+++
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS 155
Query: 209 ADKE-----VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGH 263
A+KE V+C + I+ A V + G+ D + VW++ R H
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQ-PFAPYFASVGW-DGRLKVWNTNFQIRYT-FKAH 212
Query: 264 ENRVSCLQVSPDGTAFSSGSWDTTL 288
E+ V+ L +SP+G ++G D L
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKL 237
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 35/206 (16%)
Query: 33 VVASGGLDNKVTVYAIALEDDSS---AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTC 89
V+ SG D V ++ + E+ + K + H F+S + ++ S D T
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 90 ALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWD------------ 137
LWD+ + + F GH E+ + +P +S +++ + +W+
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDN--RQILSAGAEREIKLWNILGECKFSSAEK 158
Query: 138 ---------------MRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQ-SFEGHQSDV 181
M++ VQ F + + D + +W+ T + ++ +F+ H+S+V
Sbjct: 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN--TNFQIRYTFKAHESNV 216
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDL 207
N + P+G +ATG D ++D+
Sbjct: 217 NHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 54/265 (20%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALE-DDSSAKKKTV 61
+WD T T + V + A++P + S G + ++ ++ I E SSA+K+
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE-- 159
Query: 62 ATHTSFISCCIFP---NSDQQILTGSGDCTCALWDVE------SSQLLQSFHGHTGELMD 112
H+ ++SC + S ++ + WD + Q+ +F H +
Sbjct: 160 -NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNH 218
Query: 113 LDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQ 172
L ++P+ G +G DK + IWD+ + Y +
Sbjct: 219 LSISPN--GKYIATGGKDKKLLIWDI--------------------------LNLTYPQR 250
Query: 173 SFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRAD-KEVACYKKDSILFGA------ 225
F+ S +N + F+P VA G+D ++F+L K C + + A
Sbjct: 251 EFDAG-STINQIAFNPKLQWVAVGTDQG-VKIFNLMTQSKAPVCTIEAEPITKAEGQKGK 308
Query: 226 ----TSVDFSVSGRLLFAGYNDYTI 246
TS+ ++ G+ LFAG+ D I
Sbjct: 309 NPQCTSLAWNALGKKLFAGFTDGVI 333
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 236 LLFAGYNDYTINVWDSLKCCR-----VNH--LMGHENRVSCLQVSPDGTAFSSGSWDTTL 288
+L +G D T+ +W + + + H L GH + VS L +S + S SWD TL
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 289 R 289
R
Sbjct: 101 R 101
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 117/269 (43%), Gaps = 54/269 (20%)
Query: 57 KKKTVATH-TSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
++ T+ H TS I+C F D ++TG+ D ++D + + L GH G + L
Sbjct: 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 170
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFE 175
A G VSGS+D+ V +WD++ G C FEGH++ + C+ E
Sbjct: 171 AH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR--------------CLDIVE 213
Query: 176 GHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKD---------------- 219
++K+ + TGS D T ++ L + V + ++
Sbjct: 214 -----YKNIKY------IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262
Query: 220 -SILFGATSVDFSVSGR--LLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSP 274
+L G + +VSG ++ +G D T+ VWD +KC + L GH +R+
Sbjct: 263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI--LSGHTDRIYSTIYDH 320
Query: 275 DGTAFSSGSWDTTLRDEESKNRYVQYLLR 303
+ S S DTT+R + +N + Y L+
Sbjct: 321 ERKRCISASMDTTIRIWDLENGELMYTLQ 349
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 31 GSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCA 90
G++V SG DN + V+ +A ++ HT I I+ + ++ ++ S D T
Sbjct: 280 GNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 91 LWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGH 150
+WD+E+ +L+ + GHT + L L+ VS ++D + WD + F H
Sbjct: 336 IWDLENGELMYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDAND--YSRKFSYH 389
Query: 151 H-NL-------ITDDKLV-------NIWDMRTGYCVQS 173
H NL ++D+ LV NI+++R+G V +
Sbjct: 390 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 427
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 109/307 (35%), Gaps = 63/307 (20%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISC--CIFPNSDQQ 79
V A YA G ++ SG D V V+ I H S + C + + +
Sbjct: 165 VWALKYA-HGGILVSGSTDRTVRVWDIK----KGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 80 ILTGSGDCTCALWDV-----------------------ESSQLLQSFHGHTGELMDLDLA 116
I+TGS D T +W + E+ + GH + +
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--- 276
Query: 117 PSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLVN 161
S GN VSGS D + +WD+ C+ GH + I + D +
Sbjct: 277 -SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSI 221
IWD+ G + + +GH + V ++ S + + + D + R +D Y ++
Sbjct: 336 IWDLENGELMYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 393
Query: 222 LFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHL--------MGHENRVSCLQV 272
+ F VS +L +G N + I S K N L + + + V
Sbjct: 394 ---SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 450
Query: 273 SPDGTAF 279
DG +F
Sbjct: 451 EKDGQSF 457
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 40/253 (15%)
Query: 26 AYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVAT-HTSFISCCIFPNSDQQILTGS 84
A+ P+G+++AS G D ++ ++ E DS K ++ H + + + + S
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGT--EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 85 GDCTCALW--DVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGY 142
D T +W + + + + + GH E+ + APS GN + S DK V +W++
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKSVWVWEV---- 134
Query: 143 CVQSFEGHHNLITDDKLVNIWDMRTGY-CVQSFEGHQSDVNSVKFHPSGDAVATGSDDAT 201
D Y CV H DV V +HPS + +A+ S D T
Sbjct: 135 ---------------------DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173
Query: 202 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 261
+L+ D V C + S+ F SG+ L + +D T+ +W +L
Sbjct: 174 VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR-------QYLP 226
Query: 262 GHENRVSCLQVSP 274
G+E V+C P
Sbjct: 227 GNEQGVACSGSDP 239
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 84/203 (41%), Gaps = 33/203 (16%)
Query: 115 LAPSETGNTFVSGSSDKLVNIWDMR-TGYCVQSF--EGHHNLITD--------------- 156
LA + G S D+ + IW + +S EGH +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 157 DKLVNIWDMRTG--YCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVA 214
D IW CV + EGH+++V SV + PSG+ +AT S D + ++++ + E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 215 CYKKDSILFGATS----VDFSVSGRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENR 266
C S+L T V + S LL + D T+ ++ D CC L GHE+
Sbjct: 142 CV---SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT--LEGHEST 196
Query: 267 VSCLQVSPDGTAFSSGSWDTTLR 289
V L P G +S S D T+R
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVR 219
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
V + A+APSG+++A+ D V V+ + ED+ + +HT + ++ S + +
Sbjct: 108 VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC-VSVLNSHTQDVKHVVWHPSQELLA 166
Query: 82 TGSGDCTCALWDVESSQLL--QSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW 136
+ S D T L+ E + + GH + L PS G S S D+ V IW
Sbjct: 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS--GQRLASCSDDRTVRIW 221
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 48/239 (20%)
Query: 77 DQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW 136
DQ+I++G D T +WD + + + GHTG ++ L ++GSSD V +W
Sbjct: 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE----RVIITGSSDSTVRVW 198
Query: 137 DMRTGYCVQSFEGHHNLI-------------TDDKLVNIWDMRTGYCV---QSFEGHQSD 180
D+ TG + + H + + D+ + +WDM + + + GH++
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 181 VNSVKF------HPSGDAVATGSDDATCRLFD-LRADKE-VACYKKDSILFGATSVDFSV 232
VN V F SGD + +TC L K +AC
Sbjct: 259 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC--------------LQY 304
Query: 233 SGRLLFAGYNDYTINVWDSL--KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
RL+ +G +D TI +WD C RV L GHE V C++ D SG++D ++
Sbjct: 305 RDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRF--DNKRIVSGAYDGKIK 359
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 31/193 (16%)
Query: 40 DNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQL 99
D + V+ +A D + ++ V H + ++ F D+ I++ SGD T +W+ + +
Sbjct: 232 DRSIAVWDMASPTDITLRRVLVG-HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288
Query: 100 LQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT---- 155
+++ +GH + L VSGSSD + +WD+ G C++ EGH L+
Sbjct: 289 VRTLNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344
Query: 156 DDKL---------VNIWDMRTG---------YCVQSFEGHQSDVNSVKFHPSGDAVATGS 197
D+K + +WD+ C+++ H V ++F + + S
Sbjct: 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSS 402
Query: 198 DDATCRLFDLRAD 210
D T ++D D
Sbjct: 403 HDDTILIWDFLND 415
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 29/240 (12%)
Query: 33 VVASGGLDNKVTVYAIALEDDS-SAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCAL 91
++ S D + ++ + +D + ++ + H+ F+ + + Q L+GS D L
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 92 WDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSF---- 147
WD+ + + F GHT ++ L +A S VS S D+ + +W+ G C +
Sbjct: 457 WDLAAGVSTRRFVGHTKDV--LSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGG 513
Query: 148 EGHHNLIT-----------------DDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSG 190
EGH + ++ DK V +W++ + GH V++V P G
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 191 DAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 250
A+G D L+DL K++ + +S++ ++ FS R ++ I +WD
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIH---ALCFS-PNRYWLCAATEHGIKIWD 629
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 25/193 (12%)
Query: 117 PSETGNTFVSGSSDKLVNIW-----DMRTGYCVQSFEGHHNLITD--------------- 156
P + + VS S DK + +W D G + GH + + D
Sbjct: 391 PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450
Query: 157 DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRAD-KEVAC 215
D + +WD+ G + F GH DV SV F + + S D T +L++ + K
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510
Query: 216 YKKDSILFGATSVDFS---VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 272
+ + V FS + ++ A + D T+ VW+ C + L GH VS + V
Sbjct: 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASW-DKTVKVWNLSNCKLRSTLAGHTGYVSTVAV 569
Query: 273 SPDGTAFSSGSWD 285
SPDG+ +SG D
Sbjct: 570 SPDGSLCASGGKD 582
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 225 ATSVDFSVSGRLLFAGYNDYTINVW-----DSLKCCRVNHLMGHENRVSCLQVSPDGTAF 279
AT +D + ++ + D +I +W D L GH + V + +S DG
Sbjct: 389 ATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA 445
Query: 280 SSGSWDTTLR 289
SGSWD LR
Sbjct: 446 LSGSWDGELR 455
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 54/269 (20%)
Query: 57 KKKTVATH-TSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDL 115
++ T+ H TS I+C F D ++TG+ D ++D + + L GH G + L
Sbjct: 113 QRTTLRGHXTSVITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY 170
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFE 175
A G VSGS+D+ V +WD++ G C FEGH++ + C+ E
Sbjct: 171 AH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR--------------CLDIVE 213
Query: 176 GHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKD---------------- 219
++K+ + TGS D T ++ L + V + ++
Sbjct: 214 -----YKNIKY------IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262
Query: 220 -SILFGATSVDFSVSGR--LLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSP 274
+L G + +VSG ++ +G D T+ VWD KC + L GH +R+
Sbjct: 263 VGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI--LSGHTDRIYSTIYDH 320
Query: 275 DGTAFSSGSWDTTLRDEESKNRYVQYLLR 303
+ S S DTT+R + +N + Y L+
Sbjct: 321 ERKRCISASXDTTIRIWDLENGELXYTLQ 349
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 25/158 (15%)
Query: 31 GSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCA 90
G++V SG DN + V+ +A ++ HT I I+ + ++ ++ S D T
Sbjct: 280 GNIVVSGSYDNTLIVWDVA----QXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIR 335
Query: 91 LWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGH 150
+WD+E+ +L + GHT + L L+ VS ++D + WD + F H
Sbjct: 336 IWDLENGELXYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDAND--YSRKFSYH 389
Query: 151 H-NL-------ITDDKLV-------NIWDMRTGYCVQS 173
H NL ++D+ LV NI+++R+G V +
Sbjct: 390 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 427
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 108/307 (35%), Gaps = 63/307 (20%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISC--CIFPNSDQQ 79
V A YA G ++ SG D V V+ I H S + C + + +
Sbjct: 165 VWALKYA-HGGILVSGSTDRTVRVWDIK----KGCCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 80 ILTGSGDCTCALWDV-----------------------ESSQLLQSFHGHTGELMDLDLA 116
I+TGS D T +W + E+ + GH + +
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--- 276
Query: 117 PSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLVN 161
S GN VSGS D + +WD+ C+ GH + I + D +
Sbjct: 277 -SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIR 335
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSI 221
IWD+ G + +GH + V ++ S + + + D + R +D Y ++
Sbjct: 336 IWDLENGELXYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 393
Query: 222 LFGATSVDFSVSGRLLFAG-YNDYTINVWDSLKCCRVNHL--------MGHENRVSCLQV 272
+ F VS +L +G N + I S K N L + + + V
Sbjct: 394 ---SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 450
Query: 273 SPDGTAF 279
DG +F
Sbjct: 451 EKDGQSF 457
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 33/196 (16%)
Query: 11 KEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISC 70
KE+S+ ++++ AY+P G +ASG +D + ++ IA + T+ H I
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRS 211
Query: 71 CIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSD 130
F Q ++T S D ++DV+ + L + GH ++++ P +T
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT---------- 261
Query: 131 KLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSG 190
H + DK V +WD+ T CV +F HQ V VK++ +G
Sbjct: 262 -------------------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 302
Query: 191 DAVATGSDDATCRLFD 206
+ + DD ++D
Sbjct: 303 SKIVSVGDDQEIHIYD 318
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 19/188 (10%)
Query: 119 ETGNTFVSGSSDKLVNIWDMRTGY--CVQSFEGH----------HNLITD-----DKLVN 161
E T V+GS D LV +W R S EGH H L D +
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSI 221
+WD+ G ++S + D ++ F P +ATG+ +F + + K+ Y D+
Sbjct: 106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK--EYSLDTR 163
Query: 222 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSS 281
S+ +S G+ L +G D IN++D ++ L GH + L SPD +
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 282 GSWDTTLR 289
S D ++
Sbjct: 224 ASDDGYIK 231
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 21/219 (9%)
Query: 78 QQILTGSGDCTCALWDVESSQL-LQ-SFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNI 135
+ ++TGS D +W +L LQ S GH ++ +D+ S T S S D + +
Sbjct: 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI--SHTLPIAASSSLDAHIRL 106
Query: 136 WDMRTGYCVQSFEG-------------HHNLITDDKL--VNIWDMRTGYCVQSFEGHQSD 180
WD+ G ++S + L T + VNI+ + +G S +
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166
Query: 181 VNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 240
+ S+ + P G +A+G+ D +FD+ K + + ++ S+ FS +LL
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI--RSLTFSPDSQLLVTA 224
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 279
+D I ++D L GH + V + PD T F
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 19/190 (10%)
Query: 34 VASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWD 93
V +G LD+ V V+ D+ + ++ H + ++ + S D LWD
Sbjct: 51 VVTGSLDDLVKVWK--WRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108
Query: 94 VESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNL 153
+E+ + ++S G + LA S +G+ VNI+ + +G S +
Sbjct: 109 LENGKQIKSIDA--GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166
Query: 154 ITD---------------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSD 198
I D ++NI+D+ TG + + EGH + S+ F P + T SD
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 199 DATCRLFDLR 208
D +++D++
Sbjct: 227 DGYIKIYDVQ 236
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 39/287 (13%)
Query: 30 SGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTC 89
SG+V+A LDN V +++ + D + + +IS + + G+
Sbjct: 126 SGNVLAVA-LDNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 182
Query: 90 ALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFV--SGSSDKLVNIWDMRTG-YCVQS 146
LWDV+ + L++ H+ + L + N+++ SGS ++ D+R + V +
Sbjct: 183 QLWDVQQQKRLRNMTSHSARVGSL------SWNSYILSSGSRSGHIHHHDVRVAEHHVAT 236
Query: 147 FEGHHNLI---------------TDDKLVNIWDMRTG----YCVQSFEGHQSDVNSVKFH 187
GH + +D LVN+W G +Q+F HQ V +V +
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 188 P-SGDAVATG--SDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-- 242
P + +ATG + D R++++ + AC S+ +S + L +G+
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQVCSILWSPHYKELISGHGFA 353
Query: 243 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ +W +V L GH +RV L +SPDG +S + D TLR
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 400
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+WD Q + ++T + V + ++ + +++SG + + + + + A T++
Sbjct: 184 LWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA---TLS 238
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQ----LLQSFHGHTGELMDLDLAPS 118
H+ + + + + +G D +W + LQ+F H G + + P
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 119 ETGNTFVSG--SSDKLVNIWDMRTGYCVQSFEGHHNL-----------------ITDDKL 159
++ N +G +SD+ + IW++ +G C+ + + H + ++L
Sbjct: 299 QS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 357
Query: 160 VNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRL---FDL----RADKE 212
V IW T V +GH S V S+ P G VA+ + D T RL F+L R ++E
Sbjct: 358 V-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRERE 416
Query: 213 VACYKKDSIL 222
A K S++
Sbjct: 417 KASAAKSSLI 426
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 39/287 (13%)
Query: 30 SGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTC 89
SG+V+A LDN V +++ + D + + +IS + + G+
Sbjct: 115 SGNVLAVA-LDNSVYLWSASSGDI--LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 171
Query: 90 ALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFV--SGSSDKLVNIWDMRTG-YCVQS 146
LWDV+ + L++ H+ + L + N+++ SGS ++ D+R + V +
Sbjct: 172 QLWDVQQQKRLRNMTSHSARVGSL------SWNSYILSSGSRSGHIHHHDVRVAEHHVAT 225
Query: 147 FEGHHNLI---------------TDDKLVNIWDMRTG----YCVQSFEGHQSDVNSVKFH 187
GH + +D LVN+W G +Q+F HQ V +V +
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 188 P-SGDAVATG--SDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-- 242
P + +ATG + D R++++ + AC S+ +S + L +G+
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQVCSILWSPHYKELISGHGFA 342
Query: 243 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ +W +V L GH +RV L +SPDG +S + D TLR
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 389
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+WD Q + ++T + V + ++ + +++SG + + + + + A T++
Sbjct: 173 LWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA---TLS 227
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQ----LLQSFHGHTGELMDLDLAPS 118
H+ + + + + +G D +W + LQ+F H G + + P
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 119 ETGNTFVSG--SSDKLVNIWDMRTGYCVQSFEGHHNL-----------------ITDDKL 159
++ N +G +SD+ + IW++ +G C+ + + H + ++L
Sbjct: 288 QS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 346
Query: 160 VNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRL---FDL----RADKE 212
V IW T V +GH S V S+ P G VA+ + D T RL F+L R ++E
Sbjct: 347 V-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRERE 405
Query: 213 VACYKKDSIL 222
A K S++
Sbjct: 406 KASAAKSSLI 415
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 39/287 (13%)
Query: 30 SGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTC 89
SG+V+A LDN V +++ + D + + +IS + + G+
Sbjct: 35 SGNVLAVA-LDNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 91
Query: 90 ALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFV--SGSSDKLVNIWDMRTG-YCVQS 146
LWDV+ + L++ H+ + L + N+++ SGS ++ D+R + V +
Sbjct: 92 QLWDVQQQKRLRNMTSHSARVGSL------SWNSYILSSGSRSGHIHHHDVRVAEHHVAT 145
Query: 147 FEGHHNLI---------------TDDKLVNIWDMRTG----YCVQSFEGHQSDVNSVKFH 187
GH + +D LVN+W G +Q+F HQ V +V +
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 188 P-SGDAVATG--SDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN-- 242
P + +ATG + D R++++ + AC S+ +S + L +G+
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 243 DYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ +W +V L GH +RV L +SPDG +S + D TLR
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 309
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 25/169 (14%)
Query: 60 TVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQ----LLQSFHGHTGELMDLDL 115
T++ H+ + + + + +G D +W + LQ+F H G + +
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 116 APSETGNTFVSG--SSDKLVNIWDMRTGYCVQSFEGHHNL-----------------ITD 156
P ++ N +G +SD+ + IW++ +G C+ + + H +
Sbjct: 205 CPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 157 DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLF 205
++LV IW T V +GH S V S+ P G VA+ + D T RL+
Sbjct: 264 NQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 30/197 (15%)
Query: 27 YAPSGSVVASGGLD---NKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTG 83
Y ++ GG D N V ++A + ED T+ H + C D +++G
Sbjct: 67 YDSEKELLLFGGKDTXINGVPLFATSGED----PLYTLIGHQG--NVCSLSFQDGVVISG 120
Query: 84 SGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYC 143
S D T +W + L+ + H + D + S + N F++ S+DK + +W +
Sbjct: 121 SWDKTAKVW--KEGSLVYNLQAHNASVWDAKVV-SFSENKFLTASADKTIKLW--QNDKV 175
Query: 144 VQSFEGHHNLI---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHP 188
+++F G HN + ++D L+ + D TG ++++EGH+S V +K P
Sbjct: 176 IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLP 235
Query: 189 SGDAVATGSDDATCRLF 205
+GD V+ G +D T R++
Sbjct: 236 NGDIVSCG-EDRTVRIW 251
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 96/255 (37%), Gaps = 48/255 (18%)
Query: 60 TVATHTSFISCCIFPNSDQQILTGSGDCT---CALWDVESSQLLQSFHGHTGELMDLDLA 116
V T F++ + + + +L G D L+ L + GH G + L
Sbjct: 54 VVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ 113
Query: 117 PSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEG 176
+SGS DK +W + G V + + H+ ++WD + V SF
Sbjct: 114 D----GVVISGSWDKTAKVW--KEGSLVYNLQAHN--------ASVWDAK----VVSF-- 153
Query: 177 HQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYK--KDSILFGATSVDFSVSG 234
S + T S D T +L+ + DK + + + ++ VD G
Sbjct: 154 ------------SENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVD---DG 196
Query: 235 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESK 294
+ ND I + D + GHE+ V C+++ P+G S G D T+R +
Sbjct: 197 HFISCS-NDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKE 254
Query: 295 NRYVQYLLRSRITKP 309
N L+ IT P
Sbjct: 255 NGS----LKQVITLP 265
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 32 SVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIF-PNSDQQILTGSGDCTCA 90
S+ S D K+ ++ +++S +V HT+ ++C F P S+ + TGS D T A
Sbjct: 241 SLFGSVADDQKLMIWDTR-SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 91 LWDVESSQL-LQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM 138
LWD+ + +L L SF H E+ + +P S +D+ +N+WD+
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLNVWDL 347
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 46/198 (23%)
Query: 84 SGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM----R 139
SG+C L GH E L P+ +G+ +S S D + +WD+ +
Sbjct: 164 SGECNPDL----------RLRGHQKEGYGLSWNPNLSGH-LLSASDDHTICLWDISAVPK 212
Query: 140 TGYCVQS---FEGH---------HNL-------ITDDKLVNIWDMR---TGYCVQSFEGH 177
G V + F GH H L + DD+ + IWD R T S + H
Sbjct: 213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAH 272
Query: 178 QSDVNSVKFHPSGDAV-ATGSDDATCRLFDLRADK-EVACYK--KDSILFGATSVDFSVS 233
++VN + F+P + + ATGS D T L+DLR K ++ ++ KD I V +S
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----QVQWSPH 328
Query: 234 GRLLFAGY-NDYTINVWD 250
+ A D +NVWD
Sbjct: 329 NETILASSGTDRRLNVWD 346
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 32 SVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIF-PNSDQQILTGSGDCTCA 90
S+ S D K+ ++ +++S TV HT+ ++C F P S+ + TGS D T A
Sbjct: 249 SLFGSVADDQKLMIWDTR-NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 91 LWDVESSQL-LQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM 138
LWD+ + +L L SF H E+ + +P S +D+ +++WD+
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDL 355
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 33/185 (17%)
Query: 74 PNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLV 133
PN + +L+ S D T LWD+ ++ E +D TG+T V
Sbjct: 195 PNLNGYLLSASDDHTICLWDINAT---------PKEHRVIDAKNIFTGHTAV-------- 237
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMR---TGYCVQSFEGHQSDVNSVKFHPSG 190
+ D+ +S G + DD+ + IWD R T + + H ++VN + F+P
Sbjct: 238 -VEDVAWHLLHESLFGS---VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 191 DAV-ATGSDDATCRLFDLRADK-EVACYK--KDSILFGATSVDFSVSGRLLFAGY-NDYT 245
+ + ATGS D T L+DLR K ++ ++ KD I V +S + A D
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----QVQWSPHNETILASSGTDRR 349
Query: 246 INVWD 250
++VWD
Sbjct: 350 LHVWD 354
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 32 SVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIF-PNSDQQILTGSGDCTCA 90
S+ S D K+ ++ +++S TV HT+ ++C F P S+ + TGS D T A
Sbjct: 245 SLFGSVADDQKLMIWDTR-NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 91 LWDVESSQL-LQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM 138
LWD+ + +L L SF H E+ + +P S +D+ +++WD+
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDL 351
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 33/185 (17%)
Query: 74 PNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLV 133
PN + +L+ S D T LWD+ ++ E +D TG+T V
Sbjct: 191 PNLNGYLLSASDDHTICLWDINAT---------PKEHRVIDAKNIFTGHTAV-------- 233
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMR---TGYCVQSFEGHQSDVNSVKFHPSG 190
+ D+ +S G + DD+ + IWD R T + + H ++VN + F+P
Sbjct: 234 -VEDVAWHLLHESLFGS---VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 191 DAV-ATGSDDATCRLFDLRADK-EVACYK--KDSILFGATSVDFSVSGRLLFAGY-NDYT 245
+ + ATGS D T L+DLR K ++ ++ KD I V +S + A D
Sbjct: 290 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----QVQWSPHNETILASSGTDRR 345
Query: 246 INVWD 250
++VWD
Sbjct: 346 LHVWD 350
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 32 SVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIF-PNSDQQILTGSGDCTCA 90
S+ S D K+ ++ +++S TV HT+ ++C F P S+ + TGS D T A
Sbjct: 247 SLFGSVADDQKLMIWDTR-NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 91 LWDVESSQL-LQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM 138
LWD+ + +L L SF H E+ + +P S +D+ +++WD+
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDL 353
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 33/185 (17%)
Query: 74 PNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLV 133
PN + +L+ S D T LWD+ ++ E +D TG+T V
Sbjct: 193 PNLNGYLLSASDDHTICLWDINAT---------PKEHRVIDAKNIFTGHTAV-------- 235
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMR---TGYCVQSFEGHQSDVNSVKFHPSG 190
+ D+ +S G + DD+ + IWD R T + + H ++VN + F+P
Sbjct: 236 -VEDVAWHLLHESLFGS---VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 291
Query: 191 DAV-ATGSDDATCRLFDLRADK-EVACYK--KDSILFGATSVDFSVSGRLLFAGY-NDYT 245
+ + ATGS D T L+DLR K ++ ++ KD I V +S + A D
Sbjct: 292 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF----QVQWSPHNETILASSGTDRR 347
Query: 246 INVWD 250
++VWD
Sbjct: 348 LHVWD 352
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 32 SVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIF-PNSDQQILTGSGDCTCA 90
S+ S D K+ ++ + +S V HT+ ++C F P S+ + TGS D T A
Sbjct: 243 SLFGSVADDQKLXIWDTR-SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 91 LWDVESSQL-LQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM 138
LWD+ + +L L +F H E+ + +P S +D+ +N+WD+
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSP-HNETILASSGTDRRLNVWDL 349
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 105 GHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM----RTGYCVQS---FEGH------- 150
GH E L + +G+ +S S D V +WD+ + G V + F GH
Sbjct: 177 GHQKEGYGLSWNSNLSGH-LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 151 --HNL-------ITDDKLVNIWDMRTGYCVQS---FEGHQSDVNSVKFHPSGDAV-ATGS 197
H L + DD+ + IWD R+ + + H ++VN + F+P + + ATGS
Sbjct: 236 AWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 198 DDATCRLFDLRADK-EVACYK--KDSILFGATSVDFSVSGRLLFAGY-NDYTINVWD 250
D T L+DLR K ++ ++ KD I V +S + A D +NVWD
Sbjct: 296 ADKTVALWDLRNLKLKLHTFESHKDEIF----QVHWSPHNETILASSGTDRRLNVWD 348
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 86 DCTCALWDVESSQLLQSFH---GHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRT-G 141
D +WD S+ + H HT E+ L P + +GS+DK V +WD+R
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY-SEFILATGSADKTVALWDLRNLK 309
Query: 142 YCVQSFEGHHNLITD----------------DKLVNIWDM 165
+ +FE H + I D+ +N+WD+
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 32/182 (17%)
Query: 138 MRTGYCVQ---SFEGHHNLITDDKLVNIWDM----RTGYCVQS---FEGHQSDVNSVKFH 187
+ GY + + GH +DD V +WD+ + G V + F GH + V V +H
Sbjct: 179 QKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWH 238
Query: 188 PSGDAV-ATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFS------VSGRLLFAG 240
+++ + +DD ++D R++ K S L A + + + S +L G
Sbjct: 239 LLHESLFGSVADDQKLXIWDTRSN----TTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 241 YNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAF--SSGS------WDTTLRD 290
D T+ +WD +LK +++ H++ + + SP SSG+ WD +
Sbjct: 295 SADKTVALWDLRNLK-LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 291 EE 292
EE
Sbjct: 354 EE 355
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 54 SSAKKKTVATHTSFISCCIF-PNSDQQILTGSGDCTCALWDVESSQL-LQSFHGHTGELM 111
+S V HT+ ++C F P S+ + TGS D T ALWD+ + +L L +F H E+
Sbjct: 264 TSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIF 323
Query: 112 DLDLAPSETGNTFVSGSSDKLVNIWDM 138
+ +P S +D+ +N+WD+
Sbjct: 324 QVHWSP-HNETILASSGTDRRLNVWDL 349
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 105 GHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDM----RTGYCVQS---FEGH------- 150
GH E L + +G+ +S S D V +WD+ + G V + F GH
Sbjct: 177 GHQKEGYGLSWNSNLSGH-LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 151 --HNL-------ITDDKLVNIWDMRTGYCVQS---FEGHQSDVNSVKFHPSGDAV-ATGS 197
H L + DD+ + IWD R+ + + H ++VN + F+P + + ATGS
Sbjct: 236 AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 198 DDATCRLFDLRADK-EVACYK--KDSILFGATSVDFSVSGRLLFAGY-NDYTINVWD 250
D T L+DLR K ++ ++ KD I V +S + A D +NVWD
Sbjct: 296 ADKTVALWDLRNLKLKLHTFESHKDEIF----QVHWSPHNETILASSGTDRRLNVWD 348
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 86 DCTCALWDVESSQLLQSFH---GHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRT-G 141
D +WD S+ + H HT E+ L P + +GS+DK V +WD+R
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY-SEFILATGSADKTVALWDLRNLK 309
Query: 142 YCVQSFEGHHNLITD----------------DKLVNIWDM 165
+ +FE H + I D+ +N+WD+
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 32/182 (17%)
Query: 138 MRTGYCVQ---SFEGHHNLITDDKLVNIWDM----RTGYCVQS---FEGHQSDVNSVKFH 187
+ GY + + GH +DD V +WD+ + G V + F GH + V V +H
Sbjct: 179 QKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWH 238
Query: 188 PSGDAV-ATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFS------VSGRLLFAG 240
+++ + +DD ++D R++ K S L A + + + S +L G
Sbjct: 239 LLHESLFGSVADDQKLMIWDTRSN----TTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 241 YNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAF--SSGS------WDTTLRD 290
D T+ +WD +LK +++ H++ + + SP SSG+ WD +
Sbjct: 295 SADKTVALWDLRNLK-LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 291 EE 292
EE
Sbjct: 354 EE 355
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 91/229 (39%), Gaps = 35/229 (15%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
++ +C P G + GG + ++++ +A K + ++ + + I P+S +
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDS-KVC 156
Query: 81 LTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRT 140
+ D A+WD+ + L++ F GHT +D+ S G +G D V WD+R
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SNDGTKLWTGGLDNTVRSWDLRE 214
Query: 141 GYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDA 200
G +Q + + + GYC P+G+ +A G + +
Sbjct: 215 GRQLQQHDFTSQIFS-----------LGYC-----------------PTGEWLAVGMESS 246
Query: 201 TCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 249
+ + + + +S + S+ F+ G+ + D +N W
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVL---SLKFAYCGKWFVSTGKDNLLNAW 292
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%)
Query: 181 VNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG 240
+ S K P G + G + +T ++DL A + S ++ S ++ F+
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 241 YNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+D I VWD V GH + SC+ +S DGT +G D T+R
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 94/262 (35%), Gaps = 43/262 (16%)
Query: 56 AKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLD- 114
A++ H + N + + TG C +WD+ S G+ + LD
Sbjct: 42 ARQINTLNHGEVVCAVTISNPTRHVYTGGKGCV-KVWDI-------SHPGNKSPVSQLDC 93
Query: 115 -----------LAPSETGNTFVSGSSDKLVNIWDMRT------GYCVQSFEGHHNLI--T 155
L P G T + G ++IWD+ S + L
Sbjct: 94 LNRDNYIRSCKLLPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 156 DDKL---------VNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
D K+ + +WD+ V+ F+GH + + G + TG D T R +D
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 207 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 266
LR +++ + S +F S+ + +G L G + V K + L HE+
Sbjct: 212 LREGRQLQQHDFTSQIF---SLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESC 267
Query: 267 VSCLQVSPDGTAFSSGSWDTTL 288
V L+ + G F S D L
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLL 289
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 23/208 (11%)
Query: 84 SGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTF----VSGSSDKLVNIWDMR 139
S D + ++W + + L + GHTG + +D+ + F V+GS+D + +WD+
Sbjct: 51 SKDSSASVWYSLNGERLGTLDGHTGTIWSIDV------DCFTKYCVTGSADYSIKLWDVS 104
Query: 140 TGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDD 199
G CV +++ V + + C F + +++V +P + D
Sbjct: 105 NGQCVATWK---------SPVPVKRVEFSPCGNYF---LAILDNVMKNPGSINIYEIERD 152
Query: 200 ATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVN 258
+ +++ + L AT +S G+ + AG+ D I+ +D S V+
Sbjct: 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD 212
Query: 259 HLMGHENRVSCLQVSPDGTAFSSGSWDT 286
+ HE +S +Q SPD T F + S DT
Sbjct: 213 SIDLHEKSISDMQFSPDLTYFITSSRDT 240
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/267 (18%), Positives = 101/267 (37%), Gaps = 52/267 (19%)
Query: 81 LTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKL-----VNI 135
+TGS D + LWDV + Q + ++ + ++ +P GN F++ + + +NI
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSP--CGNYFLAILDNVMKNPGSINI 146
Query: 136 WDMRTGYCVQSF-----EGHHNLITDDKL----VNIWDMRTGYC---------------- 170
+++ E H +IT + L V W + Y
Sbjct: 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 171 ----VQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGAT 226
V S + H+ ++ ++F P T S D L D+ + + Y+ D L T
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL--NT 264
Query: 227 SVDFSVSGRLLFAGYND-------------YTINVWDSLKCCRVNHLMGHENRVSCLQVS 273
+V + ++ G + + + + + + GH ++ + +S
Sbjct: 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS 324
Query: 274 PDGTAFSSGSWDTTLRDEESKNRYVQY 300
P GT+++SG D +R + Y +
Sbjct: 325 PQGTSYASGGEDGFIRLHHFEKSYFDF 351
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 226 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 272
T V ++ G LLF+ D + +VW SL R+ L GH + + V
Sbjct: 36 TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 34/169 (20%)
Query: 72 IFPNSDQQILTGSGDCTCALWDVESSQLLQSFHG--------------HTGELMDLDLAP 117
I P + +L+G D L+D+E+S QS++ H + + P
Sbjct: 51 IEPVEGRYMLSGGSDGVIVLYDLENSSR-QSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109
Query: 118 SETGNTFVSGSSDKLVNIWDMRTGYCVQSFE------GHH-----------NLITDDKLV 160
+TG F S S DK + +WD T F HH + T V
Sbjct: 110 HDTG-MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV 168
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAV-ATGSDDATCRLFDLR 208
+ D+++G C +GH+ ++ +V + P D + AT S D+ +L+D+R
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 26 AYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSG 85
+ P GS +A VY + S + + H + CC+F ++ Q++ +GS
Sbjct: 308 VFVPYGSTIA---------VYTVY----SGEQITMLKGHYKTVDCCVFQSNFQELYSGSR 354
Query: 86 DCTCALW 92
DC W
Sbjct: 355 DCNILAW 361
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 95/241 (39%), Gaps = 58/241 (24%)
Query: 30 SGSVVASGGLDNKVTVYAIALED-------DSSAKKKTVAT-----HTSFISCCIFPNSD 77
S ++A+G D K+ + ++ +D D +A KK + + HTS ++
Sbjct: 23 SQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAA------- 75
Query: 78 QQILTGSGDCTCALWDVESS-------QLLQSFHGHTGELMDLDLAPSETGNTFVSGSSD 130
GS D T ++W E S LL GH E+ + A S G + S D
Sbjct: 76 -----GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV--AWSNDGYYLATCSRD 128
Query: 131 KLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSG 190
K V IW+ T + +E C+ + H DV V +HPS
Sbjct: 129 KSVWIWE--TDESGEEYE---------------------CISVLQEHSQDVKHVIWHPSE 165
Query: 191 DAVATGSDDATCRLF-DLRADKE-VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 248
+A+ S D T R++ D D E VA ++ D + L +G +D T+ V
Sbjct: 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Query: 249 W 249
W
Sbjct: 226 W 226
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 111/260 (42%), Gaps = 15/260 (5%)
Query: 49 ALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTG 108
L+ + + +++ H S I+ F S + +++ S D +W V+ ++ GH
Sbjct: 120 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA 179
Query: 109 ELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTG 168
+ D+A + G +S S D + +W+ TG + +F N VN + G
Sbjct: 180 TVT--DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN---PHDGVNSIALFVG 234
Query: 169 YCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKE-VACYKKDSILFGATS 227
Q E S N+++F G V G + ++ + ++ + K + + +
Sbjct: 235 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT 294
Query: 228 VDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
VD + + ++AGY + + WD S +C L+ ++ + + G F S +D
Sbjct: 295 VDGN-NANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFD 352
Query: 286 TTLR-----DEESKNRYVQY 300
T+++ D ES+ +++
Sbjct: 353 TSIKLDIISDPESERPAIEF 372
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 111/260 (42%), Gaps = 15/260 (5%)
Query: 49 ALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTG 108
L+ + + +++ H S I+ F S + +++ S D +W V+ ++ GH
Sbjct: 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA 182
Query: 109 ELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTG 168
+ D+A + G +S S D + +W+ TG + +F N VN + G
Sbjct: 183 TVT--DIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN---PHDGVNSIALFVG 237
Query: 169 YCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKE-VACYKKDSILFGATS 227
Q E S N+++F G V G + ++ + ++ + K + + +
Sbjct: 238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT 297
Query: 228 VDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
VD + + ++AGY + + WD S +C L+ ++ + + G F S +D
Sbjct: 298 VDGN-NANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFD 355
Query: 286 TTLR-----DEESKNRYVQY 300
T+++ D ES+ +++
Sbjct: 356 TSIKLDIISDPESERPAIEF 375
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 28/202 (13%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVY-------AIALEDDSSAKKKTVATHTSFISCCIF 73
+V + Y P GS+ AS G D + +Y EDDS K VA S
Sbjct: 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS---LKNVAHSGSVFGLTWS 248
Query: 74 PNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLV 133
P+ +I + S D T +W+V + ++ ++ T + D L T VS S++ +
Sbjct: 249 PDG-TKIASASADKTIKIWNVATLKVEKTIPVGT-RIEDQQLGIIWTKQALVSISANGFI 306
Query: 134 NIWDMRTGYCVQSFEGHHNLIT------DDKL---------VNIWDMRTGYCVQSF-EGH 177
N + G Q GH+ IT D K +N WD+ TG + F + H
Sbjct: 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366
Query: 178 QSDVNSVKFHPSGDAVATGSDD 199
+ + +K GD DD
Sbjct: 367 ATMITGIKTTSKGDLFTVSWDD 388
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 22/177 (12%)
Query: 84 SGDCTCALWDVESSQLLQSFHGHT--GELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
SG WD ES ++ G G + D T N ++G + + +N D +
Sbjct: 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---TSNGNLTGQA-RAMNSVDFKPS 158
Query: 142 YCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDAT 201
+ G +DD V I++ +F H V+SV+++P G A+ D T
Sbjct: 159 RPFRIISG-----SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 213
Query: 202 CRLFDLRADKEVACYKKDSI--------LFGATSVDFSVSGRLLFAGYNDYTINVWD 250
L++ + ++ DS+ +FG T +S G + + D TI +W+
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT---WSPDGTKIASASADKTIKIWN 267
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 40/190 (21%)
Query: 74 PNSDQQILTGSGDCTCALWDVESSQLLQ-------SFHGHTGELMDLDLAPSETGNTFVS 126
P++D I +GS DCT +W++ L+ + GHT + + P+ N +S
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLS 149
Query: 127 GSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF 186
D ++ +WD+ TG V + + H + SV +
Sbjct: 150 AGXDNVILVWDVGTGAAVLTL-------------------------GPDVHPDTIYSVDW 184
Query: 187 HPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVD--FSVSGRLLFAGY--- 241
G + T D R+ + R VA +KD G V F G++L G+
Sbjct: 185 SRDGALICTSCRDKRVRVIEPRKGTVVA--EKDRPHEGTRPVHAVFVSEGKILTTGFSRM 242
Query: 242 NDYTINVWDS 251
++ + +WD+
Sbjct: 243 SERQVALWDT 252
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 54/150 (36%), Gaps = 22/150 (14%)
Query: 105 GHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWD 164
GHT ++D+ P N SGS D V +W++ G V
Sbjct: 79 GHTAPVLDIAWXP-HNDNVIASGSEDCTVMVWEIPDGGLVLPLR---------------- 121
Query: 165 MRTGYCVQSFEGHQSDVNSVKFHPSG-DAVATGSDDATCRLFDLRADKEVACYKKDSILF 223
V + EGH V V +HP+ + + + D ++D+ V D
Sbjct: 122 ----EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPD 177
Query: 224 GATSVDFSVSGRLLFAGYNDYTINVWDSLK 253
SVD+S G L+ D + V + K
Sbjct: 178 TIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 40/190 (21%)
Query: 74 PNSDQQILTGSGDCTCALWDVESSQLLQ-------SFHGHTGELMDLDLAPSETGNTFVS 126
P++D I +GS DCT +W++ L+ + GHT + + P+ N +S
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLS 149
Query: 127 GSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF 186
D ++ +WD+ TG V + + H + SV +
Sbjct: 150 AGCDNVILVWDVGTGAAVLTL-------------------------GPDVHPDTIYSVDW 184
Query: 187 HPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVD--FSVSGRLLFAGY--- 241
G + T D R+ + R VA +KD G V F G++L G+
Sbjct: 185 SRDGALICTSCRDKRVRVIEPRKGTVVA--EKDRPHEGTRPVHAVFVSEGKILTTGFSRM 242
Query: 242 NDYTINVWDS 251
++ + +WD+
Sbjct: 243 SERQVALWDT 252
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 53/150 (35%), Gaps = 22/150 (14%)
Query: 105 GHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWD 164
GHT ++D+ P N SGS D V +W++ G V
Sbjct: 79 GHTAPVLDIAWCP-HNDNVIASGSEDCTVMVWEIPDGGLVLPLREP-------------- 123
Query: 165 MRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSD-DATCRLFDLRADKEVACYKKDSILF 223
V + EGH V V +HP+ V + D ++D+ V D
Sbjct: 124 ------VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD 177
Query: 224 GATSVDFSVSGRLLFAGYNDYTINVWDSLK 253
SVD+S G L+ D + V + K
Sbjct: 178 TIYSVDWSRDGALICTSCRDKRVRVIEPRK 207
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 112/278 (40%), Gaps = 38/278 (13%)
Query: 43 VTVYAIALE--------DDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDV 94
+ V A+ALE D S +++++ + + + G G+ ++DV
Sbjct: 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163
Query: 95 ESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG-YCVQSFEGHHNL 153
ES L++ GH + L S + SGS ++ D+R + + + +GH +
Sbjct: 164 ESQTKLRTMAGHQARVGCL----SWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219
Query: 154 I---------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHP-SGDAVATGS 197
+ +D +V IWD R+ + H + V +V + P + +ATG
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279
Query: 198 D--DATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA--GYNDYTINVWD--S 251
D ++ V S + TS+ +S + + + G+ D +++W S
Sbjct: 280 GTMDKQIHFWNAATGARVNTVDAGSQV---TSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336
Query: 252 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ + H+ RV +SPDG S+ + D L+
Sbjct: 337 SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAP-SGSVVASGG--LDNKVTVYAIALEDDSSAKKK 59
IWD + + + T V A A+ P +++A+GG +D ++ + A + A+
Sbjct: 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----TGARVN 298
Query: 60 TVATHTSFISCCIFPNSDQQILT-GSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPS 118
TV + S P+S + + T G D ++W SS L + + L A S
Sbjct: 299 TVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358
Query: 119 ETGNTFVSGSSDKLVNIWDMRTGYCVQ 145
G + +SD+ + W + G V+
Sbjct: 359 PDGRILSTAASDENLKFWRVYDGDHVK 385
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 159 LVNIWDMRTGYCVQSFEGHQSDVNSVKFHPS-GDAVATGSDDATCRLFDLRADKEVACY- 216
++ I + T C++ + GH + +N +KFHP + + + S D RL++++ D VA +
Sbjct: 132 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 191
Query: 217 ----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 249
+D +L S D+ + G + + D+++ +W
Sbjct: 192 GVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 224
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 159 LVNIWDMRTGYCVQSFEGHQSDVNSVKFHPS-GDAVATGSDDATCRLFDLRADKEVACY- 216
++ I + T C++ + GH + +N +KFHP + + + S D RL++++ D VA +
Sbjct: 91 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 150
Query: 217 ----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 249
+D +L S D+ + G + + D+++ +W
Sbjct: 151 GVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 183
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 159 LVNIWDMRTGYCVQSFEGHQSDVNSVKFHPS-GDAVATGSDDATCRLFDLRADKEVACY- 216
++ I + T C++ + GH + +N +KFHP + + + S D RL++++ D VA +
Sbjct: 95 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 154
Query: 217 ----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 249
+D +L S D+ + G + + D+++ +W
Sbjct: 155 GVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 159 LVNIWDMRTGYCVQSFEGHQSDVNSVKFHPS-GDAVATGSDDATCRLFDLRADKEVACY- 216
++ I + T C++ + GH + +N +KFHP + + + S D RL++++ D VA +
Sbjct: 95 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 154
Query: 217 ----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 249
+D +L S D+ + G + + D+++ +W
Sbjct: 155 GVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 187
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 159 LVNIWDMRTGYCVQSFEGHQSDVNSVKFHPS-GDAVATGSDDATCRLFDLRADKEVACY- 216
++ I + T C++ + GH + +N +KFHP + + + S D RL++++ D VA +
Sbjct: 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155
Query: 217 ----KKDSILFGATSVDFSVSGRLLFAGYNDYTINVW 249
+D +L S D+ + G + + D+++ +W
Sbjct: 156 GVEGHRDEVL----SADYDLLGEKIMSCGMDHSLKLW 188
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 20/162 (12%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
H +S +S Q ++GS D +WD+ +L S+ H ++ + +P + +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK-DSV 184
Query: 124 FVSGSSDKLVNIWDMR------------TGYCVQSFEGHHN------LITDDKLVNIWDM 165
F+S S D + +WD R GY S H ++ V++ D
Sbjct: 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244
Query: 166 RTGYCVQSFEGHQSDVNSVKFHP-SGDAVATGSDDATCRLFD 206
++ CV S H V + F P S +A+ S+D + + D
Sbjct: 245 KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 18/143 (12%)
Query: 193 VATGSDDATCRLFDLRADKEVAC-----YKKDSILFGATSVDFSVSGRLLFAGYNDYTIN 247
+ SD L++L ++ + Y+ D I+ ++V SG +G D I
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIV---STVSVLSSGTQAVSGSKDICIK 152
Query: 248 VWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGS-------WDTTLRDEESK--NRY 297
VWD + ++ H +V+C+ SP + F S S WDT S+
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA 212
Query: 298 VQYLLRSRITKPTQGLTVYFQDR 320
YL S P Q F D
Sbjct: 213 PGYLPTSLAWHPQQSEVFVFGDE 235
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 31 GSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCA 90
G+ + +G N V + + +D K HT + + + ++ T S D T
Sbjct: 54 GNFLIAGSWANDVRCWEV--QDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111
Query: 91 LWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRT 140
+WD+ S+Q +Q H + + + + ++GS DK + WD R+
Sbjct: 112 MWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 82/217 (37%), Gaps = 53/217 (24%)
Query: 80 ILTGSGDCTCALWDVESS--QLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWD 137
++ GS W+V+ S + ++ HTG + LD+ S+ G+ + S DK +WD
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV--LDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 138 MRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKF--HPSGDAVAT 195
+ + +Q H + V ++ + P+ V T
Sbjct: 115 LSSNQAIQ----------------------------IAQHDAPVKTIHWIKAPNYSCVMT 146
Query: 196 GSDDATCRLFDLRADKEVA-------CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 248
GS D T + +D R+ + CY D +++ V + G +++ N +
Sbjct: 147 GSWDKTLKFWDTRSSNPMMVLQLPERCYCAD-VIYPMAVVATAERGLIVYQLENQPS--- 202
Query: 249 WDSLKCCRVNHLMGHENRVSCL----QVSPDGTAFSS 281
+ R+ + H++R + Q P G A S
Sbjct: 203 ----EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS 235
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 80/232 (34%), Gaps = 46/232 (19%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVE--SSQLLQSFHGHTGELMDLDLAPSETG 121
H I + +++ T S D T +++VE + +L+ + GH G + +D A + G
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
S S D V IW G Q + H + V
Sbjct: 68 TILASCSYDGKVMIWKEENGRWSQ-------------------------IAVHAVHSASV 102
Query: 182 NSVKFHPS--GDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS------ 233
NSV++ P G + S D + + + + + D+ G S ++ +
Sbjct: 103 NSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162
Query: 234 -------GRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSP 274
R G D + +W D+ + L GH + V + SP
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 81/232 (34%), Gaps = 46/232 (19%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVE--SSQLLQSFHGHTGELMDLDLAPSETG 121
H I + +++ T S D T +++VE + +L+ + GH G + +D A + G
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
S S D V IW G W + V H + V
Sbjct: 68 TILASCSYDGKVLIWKEENGR--------------------WSQIAVHAV-----HSASV 102
Query: 182 NSVKFHPS--GDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS------ 233
NSV++ P G + S D + + + + + D+ G S ++ +
Sbjct: 103 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162
Query: 234 -------GRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSP 274
R G D + +W D+ + L GH + V + SP
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 24/232 (10%)
Query: 76 SDQQILTGSGDCTCALWDV--ESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLV 133
S++ IL S LW++ + S L+ F + + + L+ G VSG D V
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163
Query: 134 NIWDMRTGYCVQSFEGHHNLIT----------------DDKLVNIWDMRTGYCVQSFEGH 177
+WD+ ++S+ H + + +D + +WD R +
Sbjct: 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223
Query: 178 QSDV--NSVKFHPSG-DAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSG 234
SD SV +HP D A G + L +++ S + + S
Sbjct: 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH-SS 282
Query: 235 RLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP-DGTAFSSGSWD 285
L + D T+ V D+ V + H + V+ + SP D + F++ WD
Sbjct: 283 PFLASISEDCTVAVLDA-DFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWD 333
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 81/232 (34%), Gaps = 46/232 (19%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVE--SSQLLQSFHGHTGELMDLDLAPSETG 121
H I + +++ T S D T +++VE + +L+ + GH G + +D A + G
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
S S D V IW G W + V H + V
Sbjct: 70 TILASCSYDGKVLIWKEENGR--------------------WSQIAVHAV-----HSASV 104
Query: 182 NSVKFHPS--GDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS------ 233
NSV++ P G + S D + + + + + D+ G S ++ +
Sbjct: 105 NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164
Query: 234 -------GRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSP 274
R G D + +W D+ + L GH + V + SP
Sbjct: 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 19 ATWVMACAYAP-SGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNS- 76
++V ++P SG V + G D K++ + + S K + + IF S
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCF----DGKSGEFLKYIEDDQEPVQGGIFALSW 261
Query: 77 --DQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGN-TFVSGSSDKLV 133
Q+ T D T +WDV +S+ +Q + +L + + TGN +S S D +
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 134 NIWDMRTGYCVQSFEGHHNLIT 155
N +++ +++ GH+ IT
Sbjct: 322 NFYELGHDEVLKTISGHNKGIT 343
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 101 QSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITD---- 156
++ H + D++ +P ++G ++ SD+ ++ +D ++G ++ E +
Sbjct: 200 RTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258
Query: 157 --------------DKLVNIWDMRTGYCVQ--SFEGHQSDVNSVKFHPSGDA-VATGSDD 199
D + +WD+ T CVQ + + Q V +G+ + + S D
Sbjct: 259 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318
Query: 200 ATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 259
T ++L D+ + + A +V+ L +G D I W S +
Sbjct: 319 GTLNFYELGHDEVLKTISGHNKGITALTVN------PLISGSYDGRIXEWSSSSXHQ--- 369
Query: 260 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
H N + L S +SS SWD TL+
Sbjct: 370 --DHSNLIVSLDNS-KAQEYSSISWDDTLK 396
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 19 ATWVMACAYAP-SGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNS- 76
++V ++P SG V + G D K++ + + S K + + IF S
Sbjct: 206 GSFVRDVEFSPDSGEFVITVGSDRKISCF----DGKSGEFLKYIEDDQEPVQGGIFALSW 261
Query: 77 --DQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGN-TFVSGSSDKLV 133
Q+ T D T +WDV +S+ +Q + +L + + TGN +S S D +
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 134 NIWDMRTGYCVQSFEGHHNLIT 155
N +++ +++ GH+ IT
Sbjct: 322 NFYELGHDEVLKTISGHNKGIT 343
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 107/281 (38%), Gaps = 42/281 (14%)
Query: 34 VASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNS-DQQILTGSGDCTCALW 92
V G DN + + + DS V+ H+ I+ C S + +T D + +
Sbjct: 133 VVGEGRDN----FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 188
Query: 93 DVESSQLLQSFHGHTGE---LMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEG 149
+ S H + + D++ +P ++G ++ SD+ ++ +D ++G ++ E
Sbjct: 189 QGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEFLKYIED 247
Query: 150 HHNLITD------------------DKLVNIWDMRTGYCVQ--SFEGHQSDVNSVKFHPS 189
+ D + +WD+ T CVQ + + Q V +
Sbjct: 248 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 307
Query: 190 GDA-VATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 248
G+ + + S D T ++L D+ + + A +V+ L +G D I
Sbjct: 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN------PLISGSYDGRIME 361
Query: 249 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
W S + H N + L S +SS SWD TL+
Sbjct: 362 WSSSSMHQ-----DHSNLIVSLDNS-KAQEYSSISWDDTLK 396
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 80/232 (34%), Gaps = 46/232 (19%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVE--SSQLLQSFHGHTGELMDLDLAPSETG 121
H I + ++ T S D T +++VE + +L+ + GH G + +D A + G
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
S S D V IW G W + V H + V
Sbjct: 68 TILASCSYDGKVXIWKEENGR--------------------WSQIAVHAV-----HSASV 102
Query: 182 NSVKFHPS--GDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS------ 233
NSV++ P G + S D + + + + + D+ G S ++ +
Sbjct: 103 NSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162
Query: 234 -------GRLLFAGYNDYTINVW----DSLKCCRVNHLMGHENRVSCLQVSP 274
R G D + +W D+ + L GH + V + SP
Sbjct: 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVE--SSQLLQSFHGHTGELMDLDLAPSETG 121
H I + +++ T S D T +++VE + +L+ + GH G + +D A + G
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQ 145
S S D V IW G Q
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQ 91
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 48/131 (36%), Gaps = 29/131 (22%)
Query: 79 QILTGSGDCTCALWDVESSQ--LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW 136
++ T S D + ++DV + L+ GH G + + A GN S S D+ V IW
Sbjct: 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 137 DMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPS--GDAVA 194
G +S E GH S VNSV + P G +A
Sbjct: 87 REENGTWEKSHE-------------------------HAGHDSSVNSVCWAPHDYGLILA 121
Query: 195 TGSDDATCRLF 205
GS D L
Sbjct: 122 CGSSDGAISLL 132
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 142 YCVQSFEGHHNLIT---DDKLVNIWDMRTG-YCVQSFEGHQSDVNSVKFHPSG-DAVATG 196
+CV +++ D +++IWD+R G V + H++++ V FHPS + + T
Sbjct: 240 HCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTC 299
Query: 197 SDDATCRLFDLRAD 210
S+D + +D D
Sbjct: 300 SEDGSLWHWDASTD 313
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 74 PNSDQQILTGSGDCTCALWDVESSQLLQS-FHGHTGELMDLDLAPSETGNTFVSGSSDKL 132
PN + TG D ++WDV + S H E+ ++ PS + F S D
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTC-SEDGS 304
Query: 133 VNIWDMRT 140
+ WD T
Sbjct: 305 LWHWDAST 312
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/230 (18%), Positives = 87/230 (37%), Gaps = 49/230 (21%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKK-----------------KTVATH 64
+++ + P + + G N V A +E D KK +
Sbjct: 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT 107
Query: 65 TSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTF 124
T+ ++C + + I+TG + LW+ ++ LL + H ++ + ++ G
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKW--NKDGTHI 164
Query: 125 VSGSSDKLVNIWDMRTGYCVQSFE---------------GHHNL------ITDDKLVNIW 163
+S + + +W++ +G +Q FE G +L + DDK V
Sbjct: 165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224
Query: 164 DMRTGYCVQSFE--------GHQSDVNSVKFHPSGDAVATGSDDATCRLF 205
+ Q E GH ++ ++F+ + + + SDD T R++
Sbjct: 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 87/248 (35%), Gaps = 51/248 (20%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFH------------GHTG--- 108
H + I + I++ + LW+V S ++Q F H+G
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 109 -----ELMDLD--LAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT------ 155
E +D D + P G FV ++K TG + GHH I+
Sbjct: 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEK------TPTGKLI----GHHGPISVLEFND 257
Query: 156 ---------DDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
DD + IW G F GH + S + D V + S D + RL+
Sbjct: 258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW-VGDDKVISCSMDGSVRLWS 316
Query: 207 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 266
L+ + +A D + A + S G+ + D +NV+D LK + NR
Sbjct: 317 LKQNTLLALSIVDGVPIFAGRI--SQDGQKYAVAFMDGQVNVYD-LKKLNSKSRSLYGNR 373
Query: 267 VSCLQVSP 274
L P
Sbjct: 374 DGILNPLP 381
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 177 HQSDVNSVKFHPSGD-AVATGSDDATCRLFDLRADKEVACY 216
H++ V +F+P D +AT S DAT +L+DLR K+ Y
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 242
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 177 HQSDVNSVKFHPSGD-AVATGSDDATCRLFDLRADKEVACY 216
H++ V +F+P D +AT S DAT +L+DLR K+ Y
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 243
>pdb|1HZH|L Chain L, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1HZH|M Chain M, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1N0X|L Chain L, Crystal Structure Of A Broadly Neutralizing Anti-Hiv-1
Antibody In Complex With A Peptide Mimotope
pdb|1N0X|M Chain M, Crystal Structure Of A Broadly Neutralizing Anti-Hiv-1
Antibody In Complex With A Peptide Mimotope
pdb|2NY7|L Chain L, Hiv-1 Gp120 Envelope Glycoprotein Complexed With The
Broadly Neutralizing Cd4-Binding-Site Antibody B12
pdb|3RU8|L Chain L, Structure Of An Hiv Epitope Scaffold In Complex With
Neutralizing Antibody B12 Fab
Length = 215
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 57 KKKTVATHTSFISCCIFPNSDQQILTGSGDCTCAL 91
+K+TVA + FI FP SD+Q+ +G+ C L
Sbjct: 107 RKRTVAAPSVFI----FPPSDEQLKSGTASVVCLL 137
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTV-YAIALEDDSSA 56
WV A ++PSG+ +A G D+ VT+ Y A E A
Sbjct: 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243
>pdb|2OSL|L Chain L, Crystal Structure Of Rituximab Fab In Complex With An
Epitope Peptide
pdb|2OSL|B Chain B, Crystal Structure Of Rituximab Fab In Complex With An
Epitope Peptide
Length = 213
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCAL 91
K+TVA + FI FP SD+Q+ +G+ C L
Sbjct: 106 KRTVAAPSVFI----FPPSDEQLKSGTASVVCLL 135
>pdb|1TZH|A Chain A, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
pdb|1TZH|L Chain L, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
Length = 213
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCAL 91
K+TVA + FI FP SD+Q+ +G+ C L
Sbjct: 106 KRTVAAPSVFI----FPPSDEQLKSGTASVVCLL 135
>pdb|4F33|A Chain A, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|C Chain C, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|E Chain E, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|G Chain G, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F3F|A Chain A, Crystal Structure Of Msln7-64 Morab-009 Fab Complex
Length = 213
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCAL 91
K+TVA + FI FP SD+Q+ +G+ C L
Sbjct: 106 KRTVAAPSVFI----FPPSDEQLKSGTASVVCLL 135
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 12 EHSVTMPATWVMACAYAPSGSVVASGGLDNK---VTVY---------AIALEDDSSAKKK 59
+HS+ + + + ++P GS++A N +T+Y ++++ SS
Sbjct: 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285
Query: 60 TVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTG--ELMDLDLAP 117
H+S++ F +S + + + D WDV++ + + + + H E+ + LA
Sbjct: 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV 345
Query: 118 SETGNTFV 125
E G++
Sbjct: 346 DEHGDSLA 353
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Query: 30 SGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSG-DCT 88
S V + G DN ++ L + ++ + H I + + D+ +L SG D T
Sbjct: 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286
Query: 89 CALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNI 135
LW+ ES++ L F AP E + F S D + +
Sbjct: 287 VLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEV 332
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 12 EHSVTMPATWVMACAYAPSGSVVASGGLDNK---VTVY---------AIALEDDSSAKKK 59
+HS+ + + + ++P GS++A N +T+Y ++++ SS
Sbjct: 236 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 295
Query: 60 TVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTG--ELMDLDLAP 117
H+S++ F +S + + + D WDV++ + + + + H E+ + LA
Sbjct: 296 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV 355
Query: 118 SETGNTFV 125
E G++
Sbjct: 356 DEHGDSLA 363
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 210 DKEVACYKKDSILF--GATSVDFSVSGRLLFAGYNDYTINVWDSL 252
+K+V KK S++F S D +++ + GY++YT + + SL
Sbjct: 711 NKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSL 755
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,271,703
Number of Sequences: 62578
Number of extensions: 421812
Number of successful extensions: 2720
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1420
Number of HSP's gapped (non-prelim): 369
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)