RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14961
(320 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 209 bits (533), Expect = 4e-66
Identities = 91/284 (32%), Positives = 137/284 (48%), Gaps = 23/284 (8%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
V A++P G ++A+G D + V+ + + +T+ HT + +
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGTYL 66
Query: 81 LTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRT 140
+GS D T LWD+E+ + +++ GHT + + +P G S S DK + +WD+ T
Sbjct: 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVET 124
Query: 141 GYCVQSFEGHHNLIT---------------DDKLVNIWDMRTGYCVQSFEGHQSDVNSVK 185
G C+ + GH + + D + +WD+RTG CV + GH +VNSV
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 186 FHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 245
F P G+ + + S D T +L+DL K + + G SV FS G LL +G D T
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGSEDGT 242
Query: 246 INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
I VWD V L GH N V+ L SPDG +SGS D T+R
Sbjct: 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
Score = 159 bits (403), Expect = 9e-47
Identities = 93/251 (37%), Positives = 134/251 (53%), Gaps = 27/251 (10%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP 117
++T+ HT ++C F + + TGSGD T +WD+E+ +LL++ GHTG + D+ +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 118 SETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGH------------HNLIT---DDKLVNI 162
G SGSSDK + +WD+ TG CV++ GH +++ DK + +
Sbjct: 62 D--GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 163 WDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYK--KDS 220
WD+ TG C+ + GH VNSV F P G VA+ S D T +L+DLR K VA
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179
Query: 221 ILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTA 278
+ SV FS G L + +D TI +WD + KC L GHEN V+ + SPDG
Sbjct: 180 V----NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYL 233
Query: 279 FSSGSWDTTLR 289
+SGS D T+R
Sbjct: 234 LASGSEDGTIR 244
Score = 140 bits (355), Expect = 1e-39
Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 21/220 (9%)
Query: 2 IIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTV 61
+WD T ++T ++V + A++P G +++S D + V+ + ++ T+
Sbjct: 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV----ETGKCLTTL 131
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
HT +++ F + + S D T LWD+ + + + + GHTGE+ +A S G
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV--NSVAFSPDG 189
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT---------------DDKLVNIWDMR 166
+S SSD + +WD+ TG C+ + GH N + +D + +WD+R
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249
Query: 167 TGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
TG CVQ+ GH + V S+ + P G +A+GS D T R++D
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 89.7 bits (223), Expect = 1e-20
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 170 CVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYK--KDSILFGATS 227
++ +GH V V F P G +ATGS D T +++DL + + K +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV----RD 56
Query: 228 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 287
V S G L +G +D TI +WD V L GH + VS + SPDG SS S D T
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116
Query: 288 LR 289
++
Sbjct: 117 IK 118
Score = 34.2 bits (79), Expect = 0.065
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYA 47
+ +WD T +++ V + A++P G +ASG D + ++
Sbjct: 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 121 bits (303), Expect = 5e-31
Identities = 97/312 (31%), Positives = 158/312 (50%), Gaps = 33/312 (10%)
Query: 1 MIIWDGLTQTKE-HSVTMPATWVMACAYAPSGSVVASGG-LDNKVTVYAIALEDDSSAKK 58
+ +WD T K ++ + V + A++P G ++ASG LD + ++ + +
Sbjct: 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL----RTGKPL 191
Query: 59 KTVATHTSFISCCIF-PNSDQQILTGSGDCTCALWDVESSQLLQS-FHGHTGELMDLDLA 116
T+A HT +S F P+ I +GS D T LWD+ + +LL+S GH+ + +
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD---SVVSS 248
Query: 117 PSETGNTFVSGSSDKLVNIWDMRTGY-CVQSFEGHHNLIT---------------DDKLV 160
S G+ SGSSD + +WD+R+ +++ GH + + D V
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 161 NIWDMRTGYCVQ--SFEGHQSDVNSVKFHPSGDAVATG-SDDATCRLFDLRADKEVACYK 217
+WD+ TG + + +GH+ V+S+ F P G + +G SDD T RL+DLR K + +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 218 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGT 277
S SV FS GR++ +G D T+ +WD + +L GH +RV+ L SPDG
Sbjct: 369 GHS---NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425
Query: 278 AFSSGSWDTTLR 289
+ +SGS D T+R
Sbjct: 426 SLASGSSDNTIR 437
Score = 117 bits (293), Expect = 1e-29
Identities = 83/278 (29%), Positives = 120/278 (43%), Gaps = 19/278 (6%)
Query: 29 PSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCT 88
P G+ + TV L + S S P+ S D T
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179
Query: 89 CALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQS-F 147
LWD+ + + L + GHT + L +P G SGSSD + +WD+ TG ++S
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRSTL 238
Query: 148 EGHHN--------------LITDDKLVNIWDMRTGY-CVQSFEGHQSDVNSVKFHPSGDA 192
GH + + D + +WD+R+ +++ GH S V SV F P G
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298
Query: 193 VATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWDS 251
+A+GS D T RL+DL K ++ +S+ FS G L+ G +D TI +WD
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358
Query: 252 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ L GH N V + SPDG SSGS D T+R
Sbjct: 359 RTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVR 395
Score = 106 bits (265), Expect = 7e-26
Identities = 76/255 (29%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 57 KKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQ-LLQSFHGHTGELMDLDL 115
+ H I+ F + +L+GS D T LWD+++ + L++S G +
Sbjct: 57 SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116
Query: 116 APSETGNTFVSGSS--DKLVNIWDMRTGY-CVQSFEGHHNLITD---------------- 156
S GN+ + SS D V +WD+ T +++ EGH +T
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176
Query: 157 DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGD-AVATGSDDATCRLFDLRADKEVAC 215
D + +WD+RTG + + GH V+S+ F P G +A+GS D T RL+DL K +
Sbjct: 177 DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 216 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD-SLKCCRVNHLMGHENRVSCLQVSP 274
+ FS G LL +G +D TI +WD + L GH + V + SP
Sbjct: 237 TLSGHS--DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 275 DGTAFSSGSWDTTLR 289
DG +SGS D T+R
Sbjct: 295 DGKLLASGSSDGTVR 309
Score = 103 bits (256), Expect = 1e-24
Identities = 81/280 (28%), Positives = 134/280 (47%), Gaps = 29/280 (10%)
Query: 2 IIWDGLTQTKEHSVTMPATWVMACAYAPSGS-VVASGGLDNKVTVYAIALEDDSSAKKKT 60
+WD T ++ V + A++P G ++ASG D + ++ ++ + T
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS---TGKLLRST 237
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVES-SQLLQSFHGHTGELMDLDLAPSE 119
++ H+ + P+ + +GS D T LWD+ S S LL++ GH+ ++ + +P
Sbjct: 238 LSGHSDSVVSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD- 295
Query: 120 TGNTFVSGSSDKLVNIWDMRTGYCVQ--SFEGHHNLIT----------------DDKLVN 161
G SGSSD V +WD+ TG + + +GH ++ DD +
Sbjct: 296 -GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSI 221
+WD+RTG +++ EGH S+V SV F P G V++GS D T RL+DL + D
Sbjct: 355 LWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL--RNLDGH 411
Query: 222 LFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 261
TS+DFS G+ L +G +D TI +WD +
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451
Score = 99.8 bits (247), Expect = 2e-23
Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 20/248 (8%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+ +WD T S + + +++P GS++ASG D + ++ + SS+ +T
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL---RSSSSLLRT 279
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQ--SFHGHTGELMDLDLAPS 118
++ H+S + F + + +GS D T LWD+E+ +LL + GH G + L +P
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 119 ETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT--------------DDKLVNIWD 164
+ GS D + +WD+RTG +++ EGH N+++ D V +WD
Sbjct: 340 GS-LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWD 398
Query: 165 MRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFG 224
+ TG +++ +GH S V S+ F P G ++A+GS D T RL+DL+ + + D +
Sbjct: 399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLA 458
Query: 225 ATSVDFSV 232
+ S D SV
Sbjct: 459 SKSSDLSV 466
Score = 59.3 bits (142), Expect = 8e-10
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 155 TDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLR-ADKEV 213
D LV++ D+ + GH+ + S+ F P G+ + +GS D T +L+DL +K +
Sbjct: 46 LSDSLVSLPDLSS----LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI 101
Query: 214 ACYKKDSILFGATSVDFSVSGRLLFA--GYNDYTINVWD-SLKCCRVNHLMGHENRVSCL 270
+ + S G + D T+ +WD S + L GH V+ L
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSL 161
Query: 271 QVSPDG-TAFSSGSWDTTLR 289
SPDG S S D T++
Sbjct: 162 AFSPDGKLLASGSSLDGTIK 181
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 47.7 bits (114), Expect = 7e-08
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 168 GYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
G +++ +GH V SV F P G+ +A+GSDD T R++D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 38.9 bits (91), Expect = 9e-05
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 98 QLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWD 137
+LL++ GHTG + + +P GN SGS D V +WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPD--GNLLASGSDDGTVRVWD 39
Score = 36.6 bits (85), Expect = 7e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 254 CCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ L GH V+ + SPDG +SGS D T+R
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVR 36
Score = 35.0 bits (81), Expect = 0.002
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 57 KKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWD 93
+T+ HT ++ F + +GS D T +WD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 30.4 bits (69), Expect = 0.081
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 226 TSVDFSVSGRLLFAGYNDYTINVWD 250
TSV FS G LL +G +D T+ VWD
Sbjct: 15 TSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 30.0 bits (68), Expect = 0.14
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVY 46
V + A++P G+++ASG D V V+
Sbjct: 13 PVTSVAFSPDGNLLASGSDDGTVRVW 38
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 47.7 bits (114), Expect = 7e-08
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 167 TGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
+G +++ +GH V SV F P G +A+GSDD T +L+D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 38.1 bits (89), Expect = 2e-04
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 96 SSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWD 137
S +LL++ GHTG + + +P G SGS D + +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD--GKYLASGSDDGTIKLWD 40
Score = 35.4 bits (82), Expect = 0.002
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 257 VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ L GH V+ + SPDG +SGS D T++
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIK 37
Score = 35.0 bits (81), Expect = 0.002
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 54 SSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWD 93
S KT+ HT ++ F + + +GS D T LWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 28.8 bits (65), Expect = 0.33
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 8 TQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVY 46
+ ++ V + A++P G +ASG D + ++
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 50.7 bits (121), Expect = 5e-07
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 74 PNSDQQILTGSGDCTCALWDVESSQLLQS-------FHGHTGELMDLDLAPSETGNTFVS 126
P Q++ T S D T W + L Q+ GHT ++ + PS N S
Sbjct: 85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-AMNVLAS 143
Query: 127 GSSDKLVNIWDMRTGYCVQSFEGHHNLITD---------------DKLVNIWDMRTGYCV 171
+D +VN+WD+ G V+ + H + IT DK +NI D R G V
Sbjct: 144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV 203
Query: 172 QSFEGHQS 179
S E H S
Sbjct: 204 SSVEAHAS 211
Score = 33.7 bits (77), Expect = 0.11
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 176 GHQSDVNSVKFHPSGDA-VATGSDDATCRLFDLRAD-------KEVACYKKDSILFGATS 227
G + + V F+P + T S+D T + + + + + + G S
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 228 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTT 287
S L AG D +NVWD + V + H ++++ L+ + DG+ + S D
Sbjct: 133 FHPSAMNVLASAGA-DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191
Query: 288 LR 289
L
Sbjct: 192 LN 193
Score = 31.8 bits (72), Expect = 0.46
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 175 EGHQSDVNSVKFHPSGDAV-ATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVS 233
+GH V V FHPS V A+ D ++D+ K V K S TS+++++
Sbjct: 122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ--ITSLEWNLD 179
Query: 234 GRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 264
G LL D +N+ D V+ + H
Sbjct: 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 45.5 bits (107), Expect = 3e-05
Identities = 58/274 (21%), Positives = 106/274 (38%), Gaps = 44/274 (16%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIA--LEDDSSAKKKTV--ATHTSFISCCIFPNSD 77
V A + G A+ G++ K+ ++ ++D V A+ + C
Sbjct: 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK 545
Query: 78 QQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWD 137
Q+ + + + +WDV SQL+ H + +D + ++ SGS D V +W
Sbjct: 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADP-TLLASGSDDGSVKLWS 604
Query: 138 MRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGS 197
+ G + + + N+ CVQ S+ SG ++A GS
Sbjct: 605 INQGVSIGTIKTKANIC---------------CVQ----FPSE--------SGRSLAFGS 637
Query: 198 DDATCRLFDLRADKEVACYKKDSILFGATSVDFS--VSGRLLFAGYNDYTINVWD-SLKC 254
D +DLR K C +++ + +V + V L + D T+ +WD S+
Sbjct: 638 ADHKVYYYDLRNPKLPLC----TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI 693
Query: 255 CRVNH-----LMGHENRVSCLQVSPDGTAFSSGS 283
+N MGH N + + +S ++GS
Sbjct: 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 30.8 bits (69), Expect = 1.1
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 25/147 (17%)
Query: 75 NSDQQILTGSGDCTCALWDVESSQLLQSFH------GHTGELMDL----DLAPSETGNTF 124
NSD++ L + D LW++E SF+ + EL ++ + P N F
Sbjct: 181 NSDKETLLSADDLRINLWNLEIID--GSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVF 237
Query: 125 VSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSV 184
+ SS + + D+R + + D+ G V FE S ++
Sbjct: 238 MYSSSKGEIKLNDLR-----------QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDF 286
Query: 185 KFHPSGDAVATGSDDATCRLFDLRADK 211
KF +G + + D T +++D+ K
Sbjct: 287 KFSDNGRYILS-RDYLTVKIWDVNMAK 312
>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase
component YidC; Provisional.
Length = 795
Score = 29.8 bits (67), Expect = 2.2
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 218 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP--D 275
K ++LF + V + G +F GY D + C+ + + R Q+ +
Sbjct: 3 KRTLLF-VSLVSAAFLGCQIFFGYRD--------FRSCQD---LAEKQRAISEQILAATE 50
Query: 276 GTAFSSGSWDTTLRDEESKNRY 297
S W T+L +EESKN+Y
Sbjct: 51 SVGLSVVPWTTSLEEEESKNQY 72
>gnl|CDD|185387 PRK15490, PRK15490, Vi polysaccharide biosynthesis protein TviE;
Provisional.
Length = 578
Score = 28.9 bits (64), Expect = 4.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 129 SDKLVNIWDMRTGYCVQS 146
++KLVN+W RTG C Q+
Sbjct: 535 AEKLVNLWRSRTGICQQT 552
Score = 28.1 bits (62), Expect = 6.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 157 DKLVNIWDMRTGYCVQS 173
+KLVN+W RTG C Q+
Sbjct: 536 EKLVNLWRSRTGICQQT 552
>gnl|CDD|149504 pfam08475, Baculo_VP91_N, Viral capsid protein 91 N-terminal. This
domain is found in Baculoviridae including the
nucleopolyhedrovirus at the N-terminus of the viral
capsid protein 91 (VP91).
Length = 185
Score = 27.6 bits (62), Expect = 6.6
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 14/47 (29%)
Query: 172 QSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADK---EVAC 215
Q+FE + V HP +D T F R D E+ C
Sbjct: 93 QTFENTNDNEPRVSPHP---------NDPTK--FIARGDDGWVEMEC 128
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 28.0 bits (62), Expect = 7.9
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 171 VQSFEGHQSDVNSVKFHPS-GDAVATGSDDATCRLFDLRADKEVACYKKD 219
V +GH S + ++F+P + +A+GS+D T R++++ + E KD
Sbjct: 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD 116
Score = 28.0 bits (62), Expect = 8.9
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 30/135 (22%)
Query: 24 ACAYAPSGSVVA------SGGLDNKVTVYAIALEDDSSAKKKTV---ATHTSFISCCIFP 74
+C A S VA GGL + AI LE+ +K V HTS I F
Sbjct: 31 SCGIACSSGFVAVPWEVEGGGL-----IGAIRLEN--QMRKPPVIKLKGHTSSILDLQFN 83
Query: 75 NSDQQIL-TGSGDCTCALWDV----ESSQLLQS----FHGHTGELMDLDLAPSETGNTFV 125
+IL +GS D T +W++ ES + ++ GH ++ +D P N ++
Sbjct: 84 PCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM---NYYI 140
Query: 126 SGSS--DKLVNIWDM 138
SS D VNIWD+
Sbjct: 141 MCSSGFDSFVNIWDI 155
>gnl|CDD|225889 COG3353, FlaF, Putative archaeal flagellar protein F [Cell motility
and secretion].
Length = 137
Score = 26.7 bits (59), Expect = 9.2
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 218 KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 267
K +LF T V F+VS + LF YTI V + + N
Sbjct: 83 KFDVLFNGTYVSFNVSKKYLFPL-ESYTITVPGGTGPYSLEIVTPDGNEY 131
>gnl|CDD|234346 TIGR03756, conj_TIGR03756, integrating conjugative element protein,
PFL_4710 family. Members of this protein family are
found in genomic regions associated with conjugative
transfer and integrated TOL-like plasmids. The specific
function is unknown [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 297
Score = 27.7 bits (62), Expect = 9.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 69 SCCIFPNSDQQILTGSGDCTCALW 92
SC +FP+S +G+ ALW
Sbjct: 256 SCAVFPDSGPDKKAANGNYAWALW 279
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.411
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,386,627
Number of extensions: 1370358
Number of successful extensions: 1028
Number of sequences better than 10.0: 1
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 42
Length of query: 320
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 223
Effective length of database: 6,635,264
Effective search space: 1479663872
Effective search space used: 1479663872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)