RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14961
(320 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 130 bits (326), Expect = 7e-36
Identities = 102/285 (35%), Positives = 152/285 (53%), Gaps = 20/285 (7%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
+ A + ++ S D K+ ++ ++ K + +S++ C + S +
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDS----YTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 81 LTGSGDCTCALWDVESSQLLQSF-HGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
G D C+++++++ + G L N V+ S D +WD+
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 140 TGYCVQSFEGHHNLIT---------------DDKLVNIWDMRTGYCVQSFEGHQSDVNSV 184
TG +F GH + D +WD+R G C Q+F GH+SD+N++
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 185 KFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDY 244
F P+G+A ATGSDDATCRLFDLRAD+E+ Y D+I+ G TSV FS SGRLL AGY+D+
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 245 TINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
NVWD+LK R L GH+NRVSCL V+ DG A ++GSWD+ L+
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337
Score = 91.7 bits (226), Expect = 9e-22
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
HT + + ++G+ D + LWDV Q+F GH ++ + P+ GN
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN--GNA 240
Query: 124 FVSGSSDKLVNIWDMRTGYCVQ--------------SFEGHHNLI---TDDKLVNIWDMR 166
F +GS D ++D+R + SF L+ DD N+WD
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 167 TGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
GH + V+ + G AVATGS D+ ++++
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 81.3 bits (199), Expect = 5e-18
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 4/137 (2%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+WD + T + + A + P+G+ A+G D ++ + D +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYS 265
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
I+ F S + +L G D C +WD + GH + L +
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-- 323
Query: 121 GNTFVSGSSDKLVNIWD 137
G +GS D + IW+
Sbjct: 324 GMAVATGSWDSFLKIWN 340
Score = 72.1 bits (175), Expect = 7e-15
Identities = 39/250 (15%), Positives = 81/250 (32%), Gaps = 20/250 (8%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP 117
++T+ H + I + + +++ S D +WD ++ + + + +M AP
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 118 SETGNTFVSGSSDKLVNIWD----------------MRTGYCVQSFEGHHNLITDDKLVN 161
S + + C + + D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 162 IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSI 221
+WD+ TG +F GH DV S+ P +G+ DA+ +L+D+R +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE- 226
Query: 222 LFGATSVDFSVSGRLLFAGYNDYTINV--WDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 279
++ F +G G +D T + + + ++ + S G
Sbjct: 227 -SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 280 SSGSWDTTLR 289
+G D
Sbjct: 286 LAGYDDFNCN 295
Score = 45.9 bits (107), Expect = 3e-06
Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 170 CVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVD 229
++ GH + + ++ + + + S D ++D +V S +
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCA 104
Query: 230 FSVSGRLLFAGYNDYTINVWDSLKCCRVNH 259
++ SG + G D ++++
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVR 134
Score = 33.6 bits (75), Expect = 0.026
Identities = 15/75 (20%), Positives = 27/75 (36%)
Query: 226 TSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
++ + RLL + D + +WDS +V+ + + V +P G + G D
Sbjct: 59 YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118
Query: 286 TTLRDEESKNRYVQY 300
K R
Sbjct: 119 NICSIYNLKTREGNV 133
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 105 bits (263), Expect = 5e-27
Identities = 55/311 (17%), Positives = 107/311 (34%), Gaps = 57/311 (18%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPN----- 75
V + P SV+ S D + V+ ++ ++T+ HT + F +
Sbjct: 19 PVTRVIFHPVFSVMVSASEDATIKVWDY----ETGDFERTLKGHTDSVQDISFDHSGKLL 74
Query: 76 -------------------------------------SDQQILTGSGDCTCALWDVESSQ 98
+ I++ S D T +W+V++
Sbjct: 75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134
Query: 99 LLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDK 158
+++F GH + + P++ G S S+D+ V +W + T C H +++
Sbjct: 135 CVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192
Query: 159 LVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK 218
S + + K G + +GS D T +++D+ +
Sbjct: 193 WAPESSY-------SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTA 278
V F G+ + + +D T+ VWD + L HE+ V+ L
Sbjct: 246 HD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 279 FSSGSWDTTLR 289
+GS D T++
Sbjct: 304 VVTGSVDQTVK 314
Score = 99.0 bits (245), Expect = 2e-24
Identities = 59/263 (22%), Positives = 104/263 (39%), Gaps = 31/263 (11%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP 117
K ++ H S ++ IF +++ S D T +WD E+ ++ GHT + D+
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 118 SETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNL-------------ITDDKLVNIWD 164
S S + + H+ + DK + +W+
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 165 MRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKD----- 219
++TGYCV++F GH+ V V+ + G +A+ S+D T R++ + + A ++
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 220 -------------SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 266
S G+ + G L +G D TI +WD + L+GH+N
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 267 VSCLQVSPDGTAFSSGSWDTTLR 289
V + G S + D TLR
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLR 272
Score = 62.5 bits (150), Expect = 9e-12
Identities = 35/207 (16%), Positives = 61/207 (29%), Gaps = 31/207 (14%)
Query: 97 SQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITD 156
+ GH + + P + VS S D + +WD TG ++ +GH + + D
Sbjct: 7 PPEKYALSGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64
Query: 157 DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACY 216
+ +
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDF-----------------------------QGFECIR 95
Query: 217 KKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 276
+SV +G + + D TI +W+ V GH V ++ + DG
Sbjct: 96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 155
Query: 277 TAFSSGSWDTTLRDEESKNRYVQYLLR 303
T +S S D T+R + + LR
Sbjct: 156 TLIASCSNDQTVRVWVVATKECKAELR 182
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 95.3 bits (235), Expect = 9e-23
Identities = 75/335 (22%), Positives = 133/335 (39%), Gaps = 60/335 (17%)
Query: 7 LTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAI--------------ALED 52
L ++ +H+ + V ++ G +A+G + VY + A +D
Sbjct: 55 LHKSLDHT-----SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108
Query: 53 DSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMD 112
+ + + +I F + + TG+ D +WD+E+ +++ GH ++
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168
Query: 113 LDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDD 157
LD +G+ VSGS D+ V IWD+RTG C + + + D
Sbjct: 169 LD--YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD 226
Query: 158 KLVNIWDMRTGYC-------VQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRAD 210
+ V +WD TG+ +S GH+ V SV F G +V +GS D + +L++L+
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 286
Query: 211 KEVACYKKDSILF----------GATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHL 260
+ K + SV + + + +G D + WD + L
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346
Query: 261 MGHENRVSCLQV------SPDGTAFSSGSWDTTLR 289
GH N V + V P+ F++GS D R
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 381
Score = 85.2 bits (209), Expect = 3e-19
Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 34/221 (15%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAI---ALEDDSSAK 57
+ IWD T ++++ G +A+G LD V V+ L + ++
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMD----- 112
++ H + +F Q +++GS D + LW+++++ +
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 306
Query: 113 -----LDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRT 167
L +A ++ +SGS D+ V WD ++G + +GH N + +
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV-------- 358
Query: 168 GYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLR 208
N P + ATGS D R++ +
Sbjct: 359 -------------ANGSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 74.8 bits (182), Expect = 9e-16
Identities = 62/330 (18%), Positives = 110/330 (33%), Gaps = 51/330 (15%)
Query: 8 TQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSF 67
Q HS +P + + + ++ +Y AL + + HTS
Sbjct: 7 NQRANHSKPIPPFLLDLDSQSVP--DALKKQTNDYYILYNPALPREIDVELHKSLDHTSV 64
Query: 68 ISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMD--------------- 112
+ C F N + + TG + T ++ V L+ + D
Sbjct: 65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 113 -LDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TD 156
+ S G +G+ D+L+ IWD+ V +GH I +
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 157 DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACY 216
D+ V IWD+RTG C + G +A GS D R++D V
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243
Query: 217 KKDSILFGA-----TSVDFSVSGRLLFAGYNDYTINVWD------------SLKCCRVNH 259
++ SV F+ G+ + +G D ++ +W+
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 260 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+GH++ V + + + SGS D +
Sbjct: 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 83.7 bits (205), Expect = 7e-19
Identities = 53/282 (18%), Positives = 96/282 (34%), Gaps = 57/282 (20%)
Query: 58 KKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAP 117
K + H + C+ +I++GS D T +W + + L++ GHTG + +
Sbjct: 9 PKVLKGHDDHVITCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67
Query: 118 S------------------------------------ETGNTFVSGSSDKLVNIWDMRTG 141
+ VSGS D + +WD+ TG
Sbjct: 68 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 127
Query: 142 YCVQSFEGHHNLIT-------------DDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHP 188
C+ GH + D +V +WD T C+ + +GH
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF 185
Query: 189 SGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 248
G V +GS D + R++D+ + + + + +L +G D T+ +
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ----SLTSGMELKDNILVSGNADSTVKI 241
Query: 249 WDSLKCCRVNHLMGHENRVS-CLQVSPDGTAFSSGSWDTTLR 289
WD + L G S + + + S D T++
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283
Score = 78.7 bits (192), Expect = 4e-17
Identities = 51/306 (16%), Positives = 114/306 (37%), Gaps = 33/306 (10%)
Query: 2 IIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTV 61
+W +T ++ V + + + ++ +
Sbjct: 40 KVWSAVTGKCLRTLVGHTGGVWSSQM--------RDNIIISGSTDRTLKVWNAETGECIH 91
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
+ + ++++++GS D T +WD+E+ Q L GH + G
Sbjct: 92 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC----VQYDG 147
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI-------------TDDKLVNIWDMRTG 168
VSG+ D +V +WD T C+ + +GH N + + D + +WD+ TG
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 207
Query: 169 YCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSV 228
C+ + GHQS + + + + +G+ D+T +++D++ + + + + +
Sbjct: 208 NCIHTLTGHQSLTSGM--ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVT 264
Query: 229 DFSVSGRLLFAGYNDYTINVWD-----SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGS 283
+ + +D T+ +WD ++ G V ++ S + GS
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324
Query: 284 WDTTLR 289
+ T
Sbjct: 325 RNGTEE 330
Score = 72.5 bits (176), Expect = 5e-15
Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 35/235 (14%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+ +T + + G V SG D V V+ ++ T
Sbjct: 117 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP----ETETCLHT 172
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
+ HT+ + F +++GS D + +WDVE+ + + GH ++L
Sbjct: 173 LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----K 226
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHN----------------LITDDKLVNIWD 164
N VSG++D V IWD++TG C+Q+ +G + +DD V +WD
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286
Query: 165 MRTGYCVQSF-----EGHQSDVNSVKFHPSGDAVATGSDDAT----CRLFDLRAD 210
++TG +++ G V ++ + A GS + T + D D
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341
Score = 67.5 bits (163), Expect = 2e-13
Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 12/205 (5%)
Query: 92 WDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHH 151
W + + GH ++ GN VSGS D + +W TG C+++ GH
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT---CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 152 NLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADK 211
+ ++ + + + + + R+ D
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 212 EVACYKKDS-------ILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHE 264
+ + ++ + A GR + +G D+ + VWD ++ L GH
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 265 NRVSCLQVSPDGTAFSSGSWDTTLR 289
NR + DG SGS DT++R
Sbjct: 178 NR--VYSLQFDGIHVVSGSLDTSIR 200
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 74.1 bits (180), Expect = 9e-16
Identities = 51/287 (17%), Positives = 91/287 (31%), Gaps = 71/287 (24%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGEL------------- 110
+ + C + DQ+I++G D T +WD + + + GHTG +
Sbjct: 14 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71
Query: 111 -----------------------MDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSF 147
+ L V+ S D+ + +WDM + +
Sbjct: 72 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131
Query: 148 EGHHN----------------LITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGD 191
+ D+ + +W+ T V++ GH+ +
Sbjct: 132 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDR 189
Query: 192 AVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 251
V +GS D T RL+D+ + + L D + + +G D I VWD
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN----KRIVSGAYDGKIKVWDL 245
Query: 252 LKCCR---------VNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ + L+ H RV + D S S D T+
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFR--LQFDEFQIVSSSHDDTIL 290
Score = 61.0 bits (146), Expect = 3e-11
Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 24/154 (15%)
Query: 53 DSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMD 112
++S + + D+ +++GS D T LWD+E L+ GH +
Sbjct: 164 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EE 219
Query: 113 LDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQ 172
L VSG+ D + +WD+ ++ G C++
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL------------------CLR 261
Query: 173 SFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
+ H V ++F + + S D T ++D
Sbjct: 262 TLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 293
Score = 52.5 bits (124), Expect = 2e-08
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 20/145 (13%)
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITD-------------DKLVNIWDMRTGYC 170
VS S D+ + +W+ T V++ GH I D + +WD+ G C
Sbjct: 151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC 210
Query: 171 VQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATS--- 227
++ EGH+ V ++F + +G+ D +++DL A + L
Sbjct: 211 LRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268
Query: 228 --VDFSVSGRLLFAGYNDYTINVWD 250
+ + +D TI +WD
Sbjct: 269 RVFRLQFDEFQIVSSSHDDTILIWD 293
Score = 50.6 bits (119), Expect = 7e-08
Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 18/203 (8%)
Query: 98 QLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT-- 155
Q + + + L VSG D + IWD T C + GH +
Sbjct: 6 QRIHCRSETSKGVYCL----QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 156 ---------DDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFD 206
+ + + + T S D + ++D
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 207 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 266
+ + ++ ++ + A + + + D TI VW++ C V L GH+
Sbjct: 122 MASPTDI-TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180
Query: 267 VSCLQVSPDGTAFSSGSWDTTLR 289
++C + SGS D T+R
Sbjct: 181 IAC--LQYRDRLVVSGSSDNTIR 201
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 72.9 bits (177), Expect = 3e-15
Identities = 45/284 (15%), Positives = 89/284 (31%), Gaps = 20/284 (7%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKK-TVATHTSFISCCIFPNSDQQ 79
V A + V +GG V V+ I+ + S + ++I C
Sbjct: 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 80 ILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
++ G T ++WD+ + + LA S S SD + +WD+
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 140 TGYCVQ--------------SFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVK 185
V+ S +G S + S+
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG 231
Query: 186 FHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYT 245
+ P+G+ +A G + + + + + + +S + S+ F+ G+ + D
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL---SLKFAYCGKWFVSTGKDNL 288
Query: 246 INVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+N W + + + V +S D +GS D
Sbjct: 289 LNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKAT 331
Score = 60.6 bits (145), Expect = 5e-11
Identities = 38/267 (14%), Positives = 73/267 (27%), Gaps = 25/267 (9%)
Query: 2 IIWDGLTQTKEHSVTMPAT-----WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSA 56
+WD + V+ ++ +C P G + GG + ++++ +A
Sbjct: 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134
Query: 57 KKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLA 116
+ T + + + + + +
Sbjct: 135 AELTSSAPACYALAISPDSKVCFS----CCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 117 PSETGNTFVSGSSDKLVNIWDMRTGYCVQ-------------SFEGHHNLITDDKLVNIW 163
S G +G D V WD+R G +Q G + +
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 164 DMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILF 223
H+S V S+KF G + D + + K+ S
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS--- 307
Query: 224 GATSVDFSVSGRLLFAGYNDYTINVWD 250
S D SV + + G D V++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 55.2 bits (131), Expect = 3e-09
Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 28/105 (26%)
Query: 103 FHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNI 162
+ H E L L + G FVS D L+N W G +
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--------------- 303
Query: 163 WDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDL 207
S V S + TGS D ++++
Sbjct: 304 -------------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 49.8 bits (117), Expect = 2e-07
Identities = 34/255 (13%), Positives = 62/255 (24%), Gaps = 23/255 (9%)
Query: 54 SSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQ-----LLQSFHGHTG 108
A++ H + N + + TG +WD+
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN 98
Query: 109 ELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTG 168
+ L P G T + G ++IWD+ E + L D +
Sbjct: 99 YIRSCKLLPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 169 YCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATC--------------RLFDLRADKEVA 214
+ S + T +E
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 215 CYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSP 274
++ S+ + +G A + + + L HE+ V L+ +
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY 275
Query: 275 DGTAFSSGSWDTTLR 289
G F S D L
Sbjct: 276 CGKWFVSTGKDNLLN 290
Score = 48.7 bits (114), Expect = 3e-07
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+ + + ++ + + + V++ +A G S G DN + +
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW-----RTPYGASIF 301
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDV 94
+ +S + C D+ I+TGSGD +++V
Sbjct: 302 QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 32.5 bits (72), Expect = 0.053
Identities = 7/60 (11%), Positives = 18/60 (30%)
Query: 227 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 286
S + G++ + + + R + + H V + +S +G
Sbjct: 14 SFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC 73
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 69.9 bits (169), Expect = 4e-14
Identities = 34/310 (10%), Positives = 79/310 (25%), Gaps = 40/310 (12%)
Query: 18 PATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSD 77
P ++ PS S++ D +TVY + + + CC F ++
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFD-IQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 78 QQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWD 137
+ L + + + + ++ S D L+ + D
Sbjct: 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128
Query: 138 MRTGYCVQSFEGHHNLI---------------------TDDKLVNIWDMRTGYCVQSFEG 176
R + N ++ V + +
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188
Query: 177 HQS----DVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSIL---------- 222
+ + A S D + + K
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248
Query: 223 ---FGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 279
+ S++FS + L+ +D I+ W+ ++ + N S ++++
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNIL 307
Query: 280 SSGSWDTTLR 289
+ D T +
Sbjct: 308 CLATSDDTFK 317
Score = 54.1 bits (128), Expect = 7e-09
Identities = 21/206 (10%), Positives = 56/206 (27%), Gaps = 21/206 (10%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDL--DLAPSETG 121
+ +++ G + + + + +G + +
Sbjct: 147 TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDV 181
+ S D V + + + R V
Sbjct: 207 EGYACSSIDGRVAVEFFDDQGDDYN------------SSKRFAFRCHRLNLKDTNLAYPV 254
Query: 182 NSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGY 241
NS++F P + T D ++L+ K++ + K + + V + S +L
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVVKIACSDNILCLAT 311
Query: 242 NDYTINVWDSLKCCRVNHLMGHENRV 267
+D T ++ + + + +
Sbjct: 312 SDDTFKTNAAIDQT----IELNASSI 333
Score = 49.8 bits (117), Expect = 2e-07
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Query: 170 CVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGA-TSV 228
VQ + + ++ +K PS + S D + ++ + +
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 229 DFS-VSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSC 269
+F + ++ G I D + L +E +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI 104
Score = 36.8 bits (83), Expect = 0.003
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 262 GHENRVSCLQVSPDGTAFSSGSWDTTLR 289
++ +S +++ P + SWD +L
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLT 36
Score = 29.8 bits (65), Expect = 0.38
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
V + ++P + + G D ++ + + + KK + S SD +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCW-----NLQTRKKIKNFAKFNEDSVVKIACSDNIL 307
Query: 81 LTGSGDCTCALWDVESSQLLQSFHGHTGELMDLD 114
+ D T + + Q+ + + +
Sbjct: 308 CLATSDDTFKTN----AAIDQTIELNASSIYIIF 337
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 66.0 bits (159), Expect = 8e-13
Identities = 30/268 (11%), Positives = 77/268 (28%), Gaps = 9/268 (3%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
+ A+ + +A +++V +Y + + + H ++ + +I+
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYE--KSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
T D +W ++ + + + F GS ++++I
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 142 YCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDAT 201
+ I L W + S + + T
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLA-----AGSCDFKCRIFSAYIKEVEERPAPT 182
Query: 202 CRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM 261
+ + ++ S V FS +G + +D T+ + D+ K V L
Sbjct: 183 PWGSKMPFGEL--MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240
Query: 262 GHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ + + + ++G +
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVL 268
Score = 57.2 bits (136), Expect = 6e-10
Identities = 41/327 (12%), Positives = 80/327 (24%), Gaps = 45/327 (13%)
Query: 3 IWDGLTQTKEHSVTMPA--TWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
I++ + V +AP + + + G D V+ +
Sbjct: 33 IYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL 92
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
+ + +GS + ++ E+ + L L
Sbjct: 93 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152
Query: 121 GNTFVSGSSDKLVNIWDMRTG------------------YCVQSFEGHHNLITD------ 156
+GS D I+ + +
Sbjct: 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212
Query: 157 ---------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRL-FD 206
D V + D V + + +V F VA G D +D
Sbjct: 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYD 272
Query: 207 LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENR 266
A K + D S ++ R F + + + ++ H+N
Sbjct: 273 SAAGKLSFGGRLDV---PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS--LHKNS 327
Query: 267 VSCLQVSPDG----TAFSSGSWDTTLR 289
VS + V G + F + D +
Sbjct: 328 VSQISVLSGGKAKCSQFCTTGMDGGMS 354
Score = 50.6 bits (119), Expect = 8e-08
Identities = 10/87 (11%), Positives = 27/87 (31%)
Query: 177 HQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRL 236
++ ++ +A ++ +++ +K V ++ T VD++
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 237 LFAGYNDYTINVWDSLKCCRVNHLMGH 263
+ D VW L+
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVIL 92
Score = 49.1 bits (115), Expect = 3e-07
Identities = 24/172 (13%), Positives = 57/172 (33%), Gaps = 21/172 (12%)
Query: 60 TVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSE 119
++ ++ F + ++ S D T L D + + + T L+ +
Sbjct: 196 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE- 254
Query: 120 TGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNL--------ITDDKLVNIWDMRTGYCV 171
++ V+ D ++ + SF G ++ +T + D +
Sbjct: 255 --SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312
Query: 172 QSFEG------HQSDVNSVKFHPSGDA----VATGSDDATCRLFDLRADKEV 213
+ G H++ V+ + G A T D ++D+R+ +
Sbjct: 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
Score = 38.3 bits (87), Expect = 0.001
Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 8/143 (5%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+ + D + ++ ++A + S+VA+G D ++ DS+A K +
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTY----DSAAGKLS 279
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
+ + D + ++ H + + +
Sbjct: 280 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGK 338
Query: 121 GN--TFVSGSSDKLVNIWDMRTG 141
F + D ++IWD+R+
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSL 361
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 65.3 bits (157), Expect = 1e-12
Identities = 24/303 (7%), Positives = 64/303 (21%), Gaps = 41/303 (13%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
+ V G + + D + K + + + + +
Sbjct: 44 RIRYVRRGGDTKVAFIHGTREGDFLG---IYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100
Query: 81 LTGSGDCTCALWDVESSQLLQSFHGHTGELMDL--------DLAPSETGNTFVSGSSDKL 132
+ + D+E+ + + D + G +
Sbjct: 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160
Query: 133 VNIWDMRTGYCVQSFEGHHN--------------LITDDKLVNIWDMRTGYC-------V 171
++++DM + + + ++ L D
Sbjct: 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 220
Query: 172 QSFEGHQSDVNSVKFHPSGDAVATGSDDAT-----CRLFDLRADKEVACYKKDSILFGAT 226
N K P G D ++ +S + +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280
Query: 227 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 286
+ +D + +N ++ L++S D D
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 287 TLR 289
+
Sbjct: 337 KIY 339
Score = 53.7 bits (127), Expect = 8e-09
Identities = 17/188 (9%), Positives = 36/188 (19%), Gaps = 21/188 (11%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
S F + + S D +L + + L P T
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDR---VVLNFSFEVVSKPFVIPLIPGSPNPT 233
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNS 183
+ S + D + E +
Sbjct: 234 KLVPRSMTSEAGEYDLND------------MYKRSSPINVDPGDYRMIIPLESSILIYSV 281
Query: 184 VKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYND 243
+ +D++ K + T + S + + +D
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------VKNNLTDLRLSADRKTVMVRKDD 335
Query: 244 YTINVWDS 251
I +
Sbjct: 336 GKIYTFPL 343
Score = 51.4 bits (121), Expect = 5e-08
Identities = 19/224 (8%), Positives = 50/224 (22%), Gaps = 39/224 (17%)
Query: 4 WDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDS---SAKKKT 60
+ K + T + A A+ + + + + S +K
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCT-----CALWDVESSQLLQSFHGHTGELMDLDL 115
+ + G D + +V+ + L+
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282
Query: 116 APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFE 175
E + ++ +D++T
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR-------------------------------KVT 311
Query: 176 GHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKD 219
++++ ++ V DD F L ++ + D
Sbjct: 312 EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
Score = 41.8 bits (96), Expect = 8e-05
Identities = 27/242 (11%), Positives = 57/242 (23%), Gaps = 31/242 (12%)
Query: 74 PNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLV 133
P I S + DV + +L+ + + +
Sbjct: 12 PLDGDLIAFVSRG-QAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFL 68
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIW--------------DMRTGYCVQSFEGHQS 179
I+D RTG + E N+ N D+ TG ++
Sbjct: 69 GIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA 128
Query: 180 DVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSV------- 232
+ + +A G + +F AT+ +
Sbjct: 129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA 188
Query: 233 SGRLLFAGYNDYTINVWDSL-------KCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
+ L+ D + + + + ++ P +G +D
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248
Query: 286 TT 287
Sbjct: 249 LN 250
Score = 38.3 bits (87), Expect = 8e-04
Identities = 7/108 (6%), Positives = 24/108 (22%), Gaps = 8/108 (7%)
Query: 4 WDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVAT 63
D + + + + Y K + V
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY--------DVKTRKVTE 312
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELM 111
+ ++ + ++ D + +E + ++ L+
Sbjct: 313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360
Score = 33.7 bits (75), Expect = 0.023
Identities = 12/141 (8%), Positives = 35/141 (24%), Gaps = 3/141 (2%)
Query: 160 VNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKD 219
I D+ Y ++ + V+ L A ++
Sbjct: 26 AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE 83
Query: 220 SILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAF 279
++ ++ +G+ + + I D E ++ +S +
Sbjct: 84 NL-GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 142
Query: 280 SSGSWDTTLRDEESKNRYVQY 300
+ G + + +
Sbjct: 143 AYGFPLKHGETDGYVMQAIHV 163
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 59.5 bits (142), Expect = 1e-10
Identities = 43/304 (14%), Positives = 82/304 (26%), Gaps = 52/304 (17%)
Query: 28 APSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVAT--------HTSFISCCIFPNSDQQ 79
+ S S D + V+ L D+ + K K+ + H + +
Sbjct: 21 SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80
Query: 80 IL-TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSE-------------TGNTFV 125
++ T S + + + +L+D D+ + V
Sbjct: 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 140
Query: 126 SGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVK 185
+ IW + + + V+S SV
Sbjct: 141 ATDVKGTTYIWKFHPFADESNSLTLNW---------SPTLELQGTVESPMTPSQFATSVD 191
Query: 186 FHPSGDAVATGSDDATCRLFDLRADKEVACY----KKDSILFGATSVDFSVSGRLLFAGY 241
G +ATG ++ T ++ +L + + + + SV FS G LL +
Sbjct: 192 ISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250
Query: 242 NDYTINVW----------------DSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
+ + + H + V L + G S WD
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310
Query: 286 TTLR 289
LR
Sbjct: 311 GKLR 314
Score = 57.9 bits (138), Expect = 4e-10
Identities = 32/260 (12%), Positives = 72/260 (27%), Gaps = 58/260 (22%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESS------QLLQSFHGHTGELMDLDLAP 117
H + I + ++ SGD +WD + S H L +D+
Sbjct: 13 HDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 118 -----SETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQ 172
+ + S + + + + + D +
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM------------- 117
Query: 173 SFEGHQSDVNSVKFHPSGDA-----VATGSDDATCRLFDLRADKEVACYKKDSILFG--- 224
+ ++K+ S D + T ++ + + +
Sbjct: 118 ----KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 225 -------------ATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLM------GHEN 265
ATSVD S G L+ G+N+ T+ + + + + + N
Sbjct: 174 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232
Query: 266 RVSCLQVSPDGTAFSSGSWD 285
+ ++ SP G+ +
Sbjct: 233 SIRSVKFSPQGSLLAIAHDS 252
Score = 50.6 bits (119), Expect = 1e-07
Identities = 29/218 (13%), Positives = 69/218 (31%), Gaps = 21/218 (9%)
Query: 8 TQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYA--IALEDDSSAKKKTVATHT 65
Q S P+ + + + G ++A+G + V + + + ++ ++
Sbjct: 173 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231
Query: 66 SFISCCIFPNSDQQILTGSGD---CTCALWDVESSQLLQSFHGHTGELMDL--------- 113
+ I F + L++ E + + S T
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291
Query: 114 --DLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYC- 170
L+ +++G T S D + WD++T + + H + I ++ + D
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351
Query: 171 ---VQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLF 205
V + + S +++ D + R F
Sbjct: 352 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389
Score = 49.1 bits (115), Expect = 3e-07
Identities = 30/250 (12%), Positives = 67/250 (26%), Gaps = 23/250 (9%)
Query: 34 VASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWD 93
++ + + ++ T + F + + I TG + T + +
Sbjct: 153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI-SERGLIATGFNNGTVQISE 211
Query: 94 VESSQLLQSFHGHTGELMDLDL----APSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEG 149
+ + + L +F + + + S G+ + +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271
Query: 150 HHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRA 209
+ H S V S+ F+ SG+ + + D R +D++
Sbjct: 272 LS-----------VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320
Query: 210 DKEVACYK--KDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRV 267
+ + D I + G L +V K R +
Sbjct: 321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEP---GVFDVKFLKKGWRSGMGADLNESL 377
Query: 268 SCLQVSPDGT 277
C V D +
Sbjct: 378 CC--VCLDRS 385
Score = 47.9 bits (112), Expect = 6e-07
Identities = 27/247 (10%), Positives = 62/247 (25%), Gaps = 50/247 (20%)
Query: 101 QSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLV 160
+ H ++ + + VS S D + +WD + + ++ +
Sbjct: 8 NAGKAHDADIFSVSA----CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDS 220
+ D + VAT S + + + E +
Sbjct: 64 HHVD--------------VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 109
Query: 221 ILF--------GATSVDFSVSG-----RLLFAGYNDYTINVWD----------------- 250
+ ++ + S L A T +W
Sbjct: 110 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169
Query: 251 -SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYVQYLLRSRITKP 309
V M + + +S G ++G + T++ E Y S+ +
Sbjct: 170 TLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMI 228
Query: 310 TQGLTVY 316
++
Sbjct: 229 NNSNSIR 235
Score = 42.5 bits (98), Expect = 4e-05
Identities = 9/118 (7%), Positives = 29/118 (24%), Gaps = 13/118 (11%)
Query: 170 CVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKK----------- 218
+ + H +D+ SV + S D +++D + K
Sbjct: 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63
Query: 219 DSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 276
+ + L+ + + + ++ + + +
Sbjct: 64 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 59.4 bits (142), Expect = 1e-10
Identities = 28/303 (9%), Positives = 69/303 (22%), Gaps = 24/303 (7%)
Query: 3 IWDGLTQTKEHSVTMP-ATWVMACAYAPSGS-VVASGGLDNKVTVYAIAL--EDDSSAKK 58
+ D + T S MP AP + + +
Sbjct: 22 VVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81
Query: 59 KTVATHTSFISCCIFPNSDQQILTGSGD------------CTCALWDVESSQLLQSFHGH 106
+ +++ ++ +
Sbjct: 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 141
Query: 107 TGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMR 166
+ ++ G+ +V+G +++ + + + + ++ W +
Sbjct: 142 PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 167 TGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGAT 226
+ S +F AT DL+ K D T
Sbjct: 202 SPRHEFSMLYTI-----ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 256
Query: 227 SVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDT 286
+ ++ N + +D LK ++ ++ C+ G G
Sbjct: 257 GLRSPKDPNQIYGVLN--RLAKYD-LKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313
Query: 287 TLR 289
L
Sbjct: 314 DLA 316
Score = 48.2 bits (113), Expect = 5e-07
Identities = 12/127 (9%), Positives = 31/127 (24%), Gaps = 16/127 (12%)
Query: 103 FHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHN---------- 152
H ++ + + D++TG
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 153 -----LITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDL 207
+ + +D++ +++ V F GD + G +F+
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320
Query: 208 RADKEVA 214
++V
Sbjct: 321 DTLEKVK 327
Score = 45.1 bits (105), Expect = 5e-06
Identities = 17/179 (9%), Positives = 42/179 (23%), Gaps = 11/179 (6%)
Query: 73 FPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT-FVSGSSDK 131
+ ++ + + DV S + +S + T +V +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYG 62
Query: 132 LVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGD 191
+ D+ T ++ + +V +
Sbjct: 63 DIYGIDLDTCKNTFHANLSS---------VPGEVGRSMYSFAISPDGKEVYATVNPTQRL 113
Query: 192 AVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 250
+F E + + + + G L AG + Y ++V
Sbjct: 114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172
Score = 44.7 bits (104), Expect = 7e-06
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 9/131 (6%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
+ A+ L + + A T + D
Sbjct: 210 LYTIARFKDDKQDPATADLLYGYLSVDLK---TGKTHTQEFADLTELYFTGLRSPKDPNQ 266
Query: 81 LTGSGDCTCALWDVESSQLLQSF-HGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
+ G + A +D++ +L+++ HT +A + G+ G + + +++
Sbjct: 267 IYGVLN-RLAKYDLKQRKLIKAANLDHTYY----CVAFDKKGDKLYLGGTFNDLAVFNPD 321
Query: 140 TGYCVQSFEGH 150
T V++ +
Sbjct: 322 TLEKVKNIKLP 332
Score = 44.0 bits (102), Expect = 1e-05
Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 8/121 (6%)
Query: 184 VKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYN 242
+ + + + D+ +D FG + + R + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNH 60
Query: 243 DYTINVWDSLKCCRVNHLM------GHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNR 296
I D C H + +SPDG + T ++ +
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120
Query: 297 Y 297
Sbjct: 121 P 121
Score = 34.3 bits (77), Expect = 0.015
Identities = 13/133 (9%), Positives = 37/133 (27%), Gaps = 16/133 (12%)
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGN 122
+ + F + Q T D+++ + EL L + N
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 265
Query: 123 TFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT--------------DDKLVNIWDMRTG 168
+ + +D++ +++ H + +++ T
Sbjct: 266 QIYGVLNR--LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323
Query: 169 YCVQSFEGHQSDV 181
V++ + D+
Sbjct: 324 EKVKNIKLPGGDM 336
Score = 33.2 bits (74), Expect = 0.038
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 7/111 (6%)
Query: 1 MIIWDGLTQTKEHSV-TMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKK 59
+ D T +P G L+ +A D K
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR------LAKYDLKQRKLI 285
Query: 60 TVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGEL 110
A C F ++ G A+++ ++ + +++ G++
Sbjct: 286 KAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 59.0 bits (141), Expect = 2e-10
Identities = 27/294 (9%), Positives = 62/294 (21%), Gaps = 11/294 (3%)
Query: 3 IWDGLTQTKEHSVTMPAT--WVMACAYAPSGS-VVASGGLDNKVTVYAIALEDDSSAKKK 59
+ D + +T+ M AP G A+ + + +
Sbjct: 15 VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74
Query: 60 TVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSE 119
+ + D + L Q + L +
Sbjct: 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP 134
Query: 120 TGNTFVSGSSDK----LVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFE 175
T ++ + D + + + + + Q
Sbjct: 135 RQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHES 194
Query: 176 GHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 235
D + DL + ++ + +V+
Sbjct: 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM---REVRIMDVFYFSTAVNPA 251
Query: 236 LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
A + +D L+ + + + VS DG+ G L
Sbjct: 252 KTRAFGAYNVLESFD-LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLA 304
Score = 53.3 bits (126), Expect = 1e-08
Identities = 12/174 (6%), Positives = 35/174 (20%), Gaps = 15/174 (8%)
Query: 55 SAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLD 114
+ + + + + + H +G +
Sbjct: 143 ARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPF 202
Query: 115 LAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHN--------------LITDDKLV 160
+ + + + D+ TG + ++
Sbjct: 203 YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVL 262
Query: 161 NIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVA 214
+D+ ++ SV G V G +D ++
Sbjct: 263 ESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315
Score = 49.4 bits (116), Expect = 2e-07
Identities = 17/207 (8%), Positives = 50/207 (24%), Gaps = 17/207 (8%)
Query: 80 ILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT-FVSGSSDKLVNIWDM 138
IL + + D E + + + + G + + + + + D+
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 139 RTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSD 198
TG + + + + + + +
Sbjct: 64 VTGETLGRIDLSTP----------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113
Query: 199 DATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVN 258
L+D ++ T + ++ G L+ D + ++
Sbjct: 114 PTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVED- 169
Query: 259 HLMGHENRVSCLQVSPDGTAFSSGSWD 285
++ + PD A +
Sbjct: 170 --KPIQSWEAETYAQPDVLAVWNQHES 194
Score = 39.8 bits (91), Expect = 2e-04
Identities = 11/137 (8%), Positives = 29/137 (21%), Gaps = 10/137 (7%)
Query: 17 MPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNS 76
+ D + + + +
Sbjct: 195 SGVMATPFYTARKDIDPADPTAYRTGLLTM-----DLETGEMAMREVRIMDVFYFSTAVN 249
Query: 77 DQQILTGSGDCTCALWDVESSQLLQSF-HGHTGELMDLDLAPSETGNTFVSGSSDKLVNI 135
+ +D+E + ++ H+ + S G+T G + +
Sbjct: 250 PAKTRAFGAYNVLESFDLEKNASIKRVPLPHSY----YSVNVSTDGSTVWLGGALGDLAA 305
Query: 136 WDMRTGYCVQSFEGHHN 152
+D T + N
Sbjct: 306 YDAETLEKKGQVDLPGN 322
Score = 38.6 bits (88), Expect = 6e-04
Identities = 11/113 (9%), Positives = 26/113 (23%), Gaps = 6/113 (5%)
Query: 191 DAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVW 249
D + + + D + GR+ + ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 250 DS-----LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 297
D L ++ + +SPDG + L + +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 58.8 bits (140), Expect = 2e-10
Identities = 52/234 (22%), Positives = 93/234 (39%), Gaps = 12/234 (5%)
Query: 57 KKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLA 116
++ T+ H + + C+ D ++TG+ D ++D + + L GH G + L A
Sbjct: 4 QRTTLRGHMTSVITCLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 117 PSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEG 176
G VSGS+D+ V +WD++ G C FEGH++ Y +
Sbjct: 63 H---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNS-------TVRCLDIVEYKNIKYIV 112
Query: 177 HQSDVNSVK-FHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 235
S N++ + ++ + +E + A+ S G
Sbjct: 113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 172
Query: 236 LLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
++ +G D T+ VWD + + L GH +R+ + S S DTT+R
Sbjct: 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 226
Score = 49.5 bits (116), Expect = 2e-07
Identities = 55/265 (20%), Positives = 95/265 (35%), Gaps = 14/265 (5%)
Query: 20 TWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQ 79
T V+ C + V +G D + VY + ++ H + + +
Sbjct: 13 TSVITCL-QFEDNYVITGADDKMIRVYDS----INKKFLLQLSGHDGGVWALKYAH-GGI 66
Query: 80 ILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
+++GS D T +WD++ F GH + LD+ + V+GS D +++W +
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 140 TGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDD 199
V H+ LV Y V GH + V G+ V +GS D
Sbjct: 127 KESSVPDHGEEHD----YPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYD 180
Query: 200 ATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNH 259
T ++D+ K Y S + + + D TI +WD +
Sbjct: 181 NTLIVWDVAQMKC--LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238
Query: 260 LMGHENRVSCLQVSPDGTAFSSGSW 284
L GH V L++S ++
Sbjct: 239 LQGHTALVGLLRLSDKFLVSAAADG 263
Score = 48.7 bits (114), Expect = 4e-07
Identities = 40/319 (12%), Positives = 84/319 (26%), Gaps = 37/319 (11%)
Query: 2 IIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTV 61
++D + + ++ V A YA G +V+
Sbjct: 36 RVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK---KGCCTHVFEG 92
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET- 120
T + + + I+TGS D T +W + + +
Sbjct: 93 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 152
Query: 121 ------------------GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNI 162
GN VSGS D + +WD+ C+ GH + I +
Sbjct: 153 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 212
Query: 163 WDM----------RTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKE 212
R + ++ + A +
Sbjct: 213 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 272
Query: 213 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD--SLKCCRVNHLMGHENRVSCL 270
+ + F VS +L +G ++ N+++ S K N ++ +++ +
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN-ILKDADQIWSV 330
Query: 271 QVSPDGTAFSSGSWDTTLR 289
++ D
Sbjct: 331 NFKGKTL-VAAVEKDGQSF 348
Score = 42.2 bits (97), Expect = 5e-05
Identities = 7/75 (9%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQS-FHGHTGELMDLDLAPSETGN 122
H + +S IL + ++++ S +L+ + ++ ++
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG---KT 336
Query: 123 TFVSGSSDKLVNIWD 137
+ D +
Sbjct: 337 LVAAVEKDGQSFLEI 351
Score = 38.7 bits (88), Expect = 6e-04
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 27/87 (31%)
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSD 180
+ + S+ NI+++R+G V +
Sbjct: 293 SDNILVSGSENQFNIYNLRSGKLVHAN--------------------------ILKDADQ 326
Query: 181 VNSVKFHPSGDAVATGSDDATCRLFDL 207
+ SV F VA D L L
Sbjct: 327 IWSVNFKGKT-LVAAVEKDGQSFLEIL 352
Score = 34.9 bits (78), Expect = 0.009
Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 3/117 (2%)
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAV 193
+ + + Y + H + F+ S + +
Sbjct: 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 297
Query: 194 ATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 250
+GS++ +++LR+ K V SV+F L+ A D +
Sbjct: 298 VSGSEN-QFNIYNLRSGKLVHANILKD-ADQIWSVNFK-GKTLVAAVEKDGQSFLEI 351
Score = 32.6 bits (72), Expect = 0.059
Identities = 11/97 (11%), Positives = 22/97 (22%), Gaps = 4/97 (4%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
I + T + A + G +N+ +Y +
Sbjct: 263 GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNL---RSGKLVHAN 319
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESS 97
+ I F + D L ++ S
Sbjct: 320 ILKDADQIWSVNF-KGKTLVAAVEKDGQSFLEILDFS 355
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 57.9 bits (139), Expect = 5e-10
Identities = 25/146 (17%), Positives = 42/146 (28%), Gaps = 16/146 (10%)
Query: 156 DDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADK--EV 213
D + + D T + V+ + SG + D + DL + V
Sbjct: 40 DAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 98
Query: 214 ACYKKDSILFG-ATSVDFSVSGRLLFA-GYNDYTINVWD--SLKCCRVNHLM-------- 261
A K S TS + A Y + D +L+ ++
Sbjct: 99 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 158
Query: 262 -GHENRVSCLQVSPDGTAFSSGSWDT 286
E RV+ + S F +T
Sbjct: 159 YHPEPRVAAILASHYRPEFIVNVKET 184
Score = 44.0 bits (103), Expect = 1e-05
Identities = 27/241 (11%), Positives = 51/241 (21%), Gaps = 37/241 (15%)
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTG 141
T AL D + ++ + S +G D VN+ D+
Sbjct: 37 TLRDAGQIALIDGSTYEIKTVLDTGYAVHI---SRLSASGRYLFVIGRDGKVNMIDLWMK 93
Query: 142 -----YCVQSFEGHHNLIT----------------DDKLVNIWDMRTGYCVQSFEGHQSD 180
++ ++ T I D T +
Sbjct: 94 EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153
Query: 181 VNSVKFHPSGD------------AVATGSDDATCRLFDLRADKEVACYKKDSILFGATSV 228
+ ++HP + + L D D + S
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD-YTDLNNLKTTEISAERFLHDG 212
Query: 229 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 288
S R N V K ++ + + + + G T
Sbjct: 213 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 272
Query: 289 R 289
Sbjct: 273 H 273
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 53.0 bits (125), Expect = 1e-08
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGN- 122
+ Q+ T D T +WDV +S+ +Q + +L + + TGN
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 309
Query: 123 TFVSGSSDKLVNIWDM 138
+S S D +N +++
Sbjct: 310 RIISLSLDGTLNFYEL 325
Score = 46.8 bits (109), Expect = 2e-06
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 26/88 (29%)
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSD 180
F + +D + +WD+ T CVQ + Q
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLD-------------------------KQQLG 297
Query: 181 VNSVKFHPSGDA-VATGSDDATCRLFDL 207
V +G+ + + S D T ++L
Sbjct: 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 43.0 bits (99), Expect = 2e-05
Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 1/116 (0%)
Query: 136 WDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVAT 195
D+ F + ++ + AT
Sbjct: 209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT 268
Query: 196 GSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSG-RLLFAGYNDYTINVWD 250
DAT R++D+ K V + D G V +G + + D T+N ++
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Score = 38.4 bits (87), Expect = 7e-04
Identities = 23/221 (10%), Positives = 55/221 (24%), Gaps = 27/221 (12%)
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTC-ALWDVESSQL--LQSFHGH-TGELMDLDLAP 117
+T +F + + + I G D S++ + F GH + + + +P
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 118 SETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGH 177
+ SG V +W + F+
Sbjct: 74 IKGSQYLCSGDESGKVIVWGWTFDKE-------------------SNSVEVNVKSEFQVL 114
Query: 178 QSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLL 237
++ + + G + + + D + + + S +
Sbjct: 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174
Query: 238 FAGYNDYTINVWDSLKCCR----VNHLMGHENRVSCLQVSP 274
D V+ + + V ++ SP
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 215
Score = 35.3 bits (79), Expect = 0.007
Identities = 36/279 (12%), Positives = 60/279 (21%), Gaps = 33/279 (11%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATH-TSFISCCIF-PNSDQQ 79
+Y P+ + +A + V + D H +S ++ F P Q
Sbjct: 20 TTHLSYDPTTNAIAYPCGKS-AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 80 IL-TGSGDCTCALWDVESSQLLQSFH--------GHTGELMDLDLAPSETGNTFVSGSSD 130
L +G +W + S G + D+ V D
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 131 KLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSG 190
+G + GH I L MR+ KF S
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198
Query: 191 DAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 250
F + + V D +
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSD---------------------RKISCFDGKS 237
Query: 251 SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ D F++ D T+R
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 276
Score = 31.8 bits (70), Expect = 0.11
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 6/101 (5%)
Query: 225 ATSVDFSVSG-RLLFAGYNDYTINVWD--SLKCCRVNHLMGHE-NRVSCLQVSP--DGTA 278
T + + + + + + D K V GH + V+ ++ SP
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 279 FSSGSWDTTLRDEESKNRYVQYLLRSRITKPTQGLTVYFQD 319
SG + + + Q L D
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 50.6 bits (119), Expect = 9e-08
Identities = 21/216 (9%), Positives = 56/216 (25%), Gaps = 11/216 (5%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+ + D + + + +P + + + + G KV + + +
Sbjct: 131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
+++ + D+ S +
Sbjct: 191 PEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSD 180
G V+ + + + V + D +TG + FE +
Sbjct: 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTA-------SRFVVVLDAKTGERLAKFEMG-HE 301
Query: 181 VNSVKFHPSGD--AVATGSDDATCRLFDLRADKEVA 214
++S+ A + D T + D + +E+
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337
Score = 47.5 bits (111), Expect = 1e-06
Identities = 24/261 (9%), Positives = 52/261 (19%), Gaps = 46/261 (17%)
Query: 75 NSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELM-------DLDLAPSETGNTFVSG 127
+I G ++D + L P F
Sbjct: 66 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF 125
Query: 128 SSDKLVNIWDMRTGYCVQSFEGHHNLIT-------------DDKLVNIWDMRTGYCVQ-- 172
S V + D+ + + D L + G
Sbjct: 126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 185
Query: 173 ---SFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVD 229
+ +N + + + DL + +++ +
Sbjct: 186 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 245
Query: 230 FSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG-------------------HENRVSCL 270
+ G A + + H + + +
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSI 305
Query: 271 QVSPDGT--AFSSGSWDTTLR 289
VS D ++ + D TL
Sbjct: 306 NVSQDEKPLLYALSTGDKTLY 326
Score = 44.0 bits (102), Expect = 1e-05
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSET 120
VA H + + + + + + D ++ + L F E+ ++++ E
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEK 312
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGH 150
+ + DK + I D +G ++S
Sbjct: 313 PLLYALSTGDKTLYIHDAESGEELRSVNQL 342
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 50.0 bits (117), Expect = 1e-07
Identities = 32/283 (11%), Positives = 67/283 (23%), Gaps = 17/283 (6%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
+ A + + G + S + + + I + + H + I+ +
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDI---STGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 81 LTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRT 140
D + S + L LA S G+ V+ + +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 141 GYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDA-------- 192
S+ +++DK + S +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 193 ----VATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINV 248
VAT + V +S L G D ++ V
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 249 WD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
W+ + H + + T S D+ ++
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Score = 48.8 bits (114), Expect = 3e-07
Identities = 12/106 (11%), Positives = 32/106 (30%), Gaps = 1/106 (0%)
Query: 168 GYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATS 227
G Q GH + ++ G + + + +D+ + T
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH-ATMITG 60
Query: 228 VDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVS 273
+ + G L ++D+ V + + ++ L ++
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
Score = 48.4 bits (113), Expect = 3e-07
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 98 QLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHN 152
+ Q +GH + L + G T S ++ +N WD+ TG + F H
Sbjct: 3 SIDQVRYGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGISNRVFPDVHA 55
Score = 44.2 bits (102), Expect = 1e-05
Identities = 26/239 (10%), Positives = 60/239 (25%), Gaps = 13/239 (5%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSF-HGHTGELMDLDLAPSETGN 122
H I+ + + + + WD+ + + F H + +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 123 TFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVN 182
T K+V + + D+ C + +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 183 SVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYN 242
+ + S+D + K + + ++ + N
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 243 DYTINVWDSLKCCRV------------NHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ D + N H +V+C+ SPD ++GS D ++
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Score = 42.7 bits (98), Expect = 3e-05
Identities = 13/74 (17%), Positives = 29/74 (39%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT 123
HT+ ++C + + ++ TGS D + +W++ + ++ T
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282
Query: 124 FVSGSSDKLVNIWD 137
VS D + W+
Sbjct: 283 IVSAGQDSNIKFWN 296
Score = 42.3 bits (97), Expect = 4e-05
Identities = 15/115 (13%), Positives = 38/115 (33%)
Query: 136 WDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVAT 195
+F + ++ + S+ H + V V + P +AT
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 196 GSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 250
GS D + ++++ + K + + + ++ + + D I W+
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 40.4 bits (92), Expect = 2e-04
Identities = 6/76 (7%), Positives = 20/76 (26%), Gaps = 2/76 (2%)
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTG--YCVQSFEGHQSDVNSVKFHPSGD 191
+ D V +W+M + + H + +
Sbjct: 222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 281
Query: 192 AVATGSDDATCRLFDL 207
+ + D+ + +++
Sbjct: 282 TIVSAGQDSNIKFWNV 297
Score = 40.0 bits (91), Expect = 2e-04
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+ + +S T V +++P +A+G LDN V V+ + S
Sbjct: 206 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN--MNKPSDHPIII 263
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDV 94
H + ++ I++ D W+V
Sbjct: 264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Score = 35.7 bits (80), Expect = 0.006
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 260 LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
GH ++ L S DG S + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHIN 37
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 50.0 bits (118), Expect = 1e-07
Identities = 25/233 (10%), Positives = 49/233 (21%), Gaps = 36/233 (15%)
Query: 91 LWDVESSQLLQSFHGHTGELMDLD------LAPSETGNTFVSGSSDKLVNIWDMRTGYCV 144
++D ++ +LL G G + + + + G+ +V I D T
Sbjct: 2 VYDADAKKLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHA 61
Query: 145 QSFEGHHNLI---------------------TDDKLVNIWDMRTGYCVQSFEGHQSDVNS 183
++ + E
Sbjct: 62 GEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEI--DTAAC 119
Query: 184 VKFHPSGD--AVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR---LLF 238
V +P+GD A + KE D+ + F + R
Sbjct: 120 VLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYL 179
Query: 239 AGYNDYTINVWD--SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ D K + P G ++
Sbjct: 180 FTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQQTAVQAKQNRY 232
Score = 44.6 bits (104), Expect = 8e-06
Identities = 19/225 (8%), Positives = 41/225 (18%), Gaps = 44/225 (19%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+ + P+G + ++ + + AK+
Sbjct: 98 ASVTVIDAVSKKMLSEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSD 157
Query: 63 THTSFISCCIFPNSDQ---QILTGSGDCTCALWDVESSQ--LLQSFHGHTGELMDLDLAP 117
F N+ + L + D + + + T P
Sbjct: 158 AFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRP 217
Query: 118 SET----------------------------GNTFVSGSSDKLVNIWDMRTGYCVQSFE- 148
+V K V+
Sbjct: 218 GGMQQTAVQAKQNRYYVLMHKGTDGSHKDPGTQVWVYDLKSKQRVARWDLAQQKVEPLVS 277
Query: 149 ------GHHNLIT---DDKLVNIWDMRTGYCVQSFEGHQSDVNSV 184
LV + D RTG + + + +
Sbjct: 278 IQVSEDDKPLFYGLTATSDLV-VMDARTGALQHVEKQIGNTSSLL 321
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 49.5 bits (116), Expect = 2e-07
Identities = 26/270 (9%), Positives = 59/270 (21%), Gaps = 22/270 (8%)
Query: 2 IIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDD-------- 53
+ T T + +PSG ASG + V ++
Sbjct: 41 YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100
Query: 54 ------SSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHT 107
+ + TG+ + + +
Sbjct: 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 160
Query: 108 GELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRT 167
+ D D + +++
Sbjct: 161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220
Query: 168 G-------YCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDS 220
G H V + + P G +A+ S D T +++++ K +
Sbjct: 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280
Query: 221 ILFGATSVDFSVSGRLLFAGYNDYTINVWD 250
+ + + L + + IN +
Sbjct: 281 R-IEDQQLGIIWTKQALVSISANGFINFVN 309
Score = 49.1 bits (115), Expect = 3e-07
Identities = 34/292 (11%), Positives = 75/292 (25%), Gaps = 29/292 (9%)
Query: 22 VMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL 81
+ P+G + V + S + H+ + S
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPV----GSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74
Query: 82 TGSGDCT--CALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMR 139
+G + L + +G + D+ V ++ +++
Sbjct: 75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134
Query: 140 TGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNS---------------- 183
TG + G + R +
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 184 VKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILF-----GATSVDFSVSGRLLF 238
V+++P G A+ D T L++ + ++ DS+ + +S G +
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254
Query: 239 AGYNDYTINVWDSLKCCRVNHLMGHEN-RVSCLQVSPDGTAFSSGSWDTTLR 289
+ D TI +W+ + L + A S S + +
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306
Score = 46.0 bits (107), Expect = 2e-06
Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 26/87 (29%)
Query: 121 GNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSD 180
G S S+DK + IW++ T ++ + +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVG--------------------------TRIE 283
Query: 181 VNSVKFHPSGDAVATGSDDATCRLFDL 207
+ + A+ + S + +
Sbjct: 284 DQQLGIIWTKQALVSISANGFINFVNP 310
Score = 38.7 bits (88), Expect = 5e-04
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 4 WDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVAT 63
G+ + + V ++P G+ +AS D + ++ +A + +KT+
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA----TLKVEKTIPV 278
Query: 64 HTSFIS-CCIFPNSDQQILTGSGDCTCALWDVE 95
T + Q +++ S + + E
Sbjct: 279 GTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 49.6 bits (117), Expect = 2e-07
Identities = 25/238 (10%), Positives = 46/238 (19%), Gaps = 36/238 (15%)
Query: 84 SGDCTCALWDVESSQLLQSFHGHTGELMDLD------LAPSETGNTFVSGSSDKLVNIWD 137
+G + L G L S + G V ++D
Sbjct: 43 AGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102
Query: 138 MRTGYCVQSFEGHHNLIT-----------------------DDKLVNIWDMRTGYCVQSF 174
T + E + Q
Sbjct: 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT 162
Query: 175 EGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGAT----SVDF 230
+ + GS A+ DL A A +
Sbjct: 163 KSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQA 219
Query: 231 SVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 288
+ G L++A + + + G+E+ G + +T
Sbjct: 220 NYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277
Score = 48.8 bits (115), Expect = 3e-07
Identities = 19/255 (7%), Positives = 48/255 (18%), Gaps = 48/255 (18%)
Query: 80 ILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT------FVSGSSDKLV 133
G ++D + + + GN
Sbjct: 89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148
Query: 134 NIWDMRTGYCVQSFEGHHNLIT-------------DDKLVNIWDMRTGYC-----VQSFE 175
+ Q + L Q
Sbjct: 149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208
Query: 176 GHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGR 235
+ + + G V + D+ A D G + +F +G
Sbjct: 209 AQNCSSQAAQANYPGMLVWAVASSIL--QGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266
Query: 236 LLFAGYNDY-------------------TINVWDSLKCCRVNHLMGHENRVSCLQVSPDG 276
+ A + + + + + + + + + DG
Sbjct: 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT-ASVGQTSGPISNGHDSDAIIAAQDG 325
Query: 277 T--AFSSGSWDTTLR 289
+++ + L
Sbjct: 326 ASDNYANSAGTEVLD 340
Score = 31.9 bits (71), Expect = 0.094
Identities = 6/74 (8%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 75 NSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVN 134
+ + + Q + + + A + + + + ++++
Sbjct: 282 TVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLD 340
Query: 135 IWDMRTGYCVQSFE 148
I+D + S E
Sbjct: 341 IYDAASDQDQSSVE 354
Score = 29.9 bits (66), Expect = 0.36
Identities = 12/210 (5%), Positives = 41/210 (19%), Gaps = 34/210 (16%)
Query: 3 IWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVA 62
+ + + + + A + + S + A A +
Sbjct: 150 GLSVPGASDDQLTKSASCFHIH-PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGN 122
+ + + + + G+ + +
Sbjct: 209 AQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM 268
Query: 123 TFVSGSSDKL-----------------VNIWDMRTGYCVQSFEGHHNLI----------- 154
++D + + G H+
Sbjct: 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASD 328
Query: 155 -----TDDKLVNIWDMRTGYCVQSFEGHQS 179
++++I+D + S E +
Sbjct: 329 NYANSAGTEVLDIYDAASDQDQSSVELDKG 358
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 46.1 bits (107), Expect = 2e-06
Identities = 8/74 (10%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGY-CVQSFEGHQSDVNSVKFHPSGDA 192
+ + E + D + I+ ++ +++ H+ VN++ +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-T 271
Query: 193 VATGSDDATCRLFD 206
+ + DA + ++
Sbjct: 272 LVSSGADACIKRWN 285
Score = 46.1 bits (107), Expect = 2e-06
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 64 HTSFISCCIFPNSDQQILTGSGDCTCALWDVESS-QLLQSFHGHTGELMDLDLAPSETGN 122
+ + + TGS D ++ V+ +++++ + H + +L +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET---PS 270
Query: 123 TFVSGSSDKLVNIWD 137
T VS +D + W+
Sbjct: 271 TLVSSGADACIKRWN 285
Score = 41.5 bits (95), Expect = 7e-05
Identities = 31/282 (10%), Positives = 82/282 (29%), Gaps = 27/282 (9%)
Query: 21 WVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
+ A P + SG D ++ ++ + H++ I + +
Sbjct: 15 GITALTVNP----LISGSYDGRIMEWSSS---------SMHQDHSNLIVSLDNSKAQEYS 61
Query: 81 LTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRT 140
D + Q + ++ + + ++ + +
Sbjct: 62 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 121
Query: 141 GYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFE---GHQSDVNSVKFHPSGDAVATGS 197
S ++ + ++ I + SF+ ++ + + PS +A G
Sbjct: 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD 181
Query: 198 DDATCRLFDLRADKEVACYKKDSILF---------GATSVDFSVSGRLLFAGYNDYTINV 248
L+DL++ + + + + L+ G D I +
Sbjct: 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241
Query: 249 WDSLKCCRVNH-LMGHENRVSCLQVSPDGTAFSSGSWDTTLR 289
+ + ++ L H++ V+ L T S D ++
Sbjct: 242 YSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIK 282
Score = 40.7 bits (93), Expect = 1e-04
Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+K ++++ A +VA+G LD + +Y++ K
Sbjct: 197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV---KRPMKIIKA 253
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDV 94
+ H ++ ++ + +++ D W+V
Sbjct: 254 LNAHKDGVNNLLW-ETPSTLVSSGADACIKRWNV 286
Score = 38.4 bits (87), Expect = 6e-04
Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 2/117 (1%)
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAV 193
+ + + + ++ + + ++ + + D V
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230
Query: 194 ATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 250
ATGS D ++ ++ ++ G ++ + L+ +G D I W+
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPSTLVSSG-ADACIKRWN 285
Score = 37.6 bits (85), Expect = 0.001
Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 12/180 (6%)
Query: 98 QLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDD 157
++L++ GH + L + P +SGS D + W + + S +
Sbjct: 4 EVLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57
Query: 158 KLVN--IWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVAC 215
+ + WD + S + G +DD L D +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 216 YKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPD 275
++V S + + + S + + S + +SP
Sbjct: 118 RLN----SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 45.3 bits (107), Expect = 6e-06
Identities = 28/212 (13%), Positives = 54/212 (25%), Gaps = 26/212 (12%)
Query: 1 MIIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKT 60
+ T + + A +G+ G +KV V S +
Sbjct: 199 RAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD--SKVPVVDGR---GESEFTRY 253
Query: 61 VATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLL--------QSFHGHT-GELM 111
+ + P+ I G T ++ ++ L + L
Sbjct: 254 IPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLG 313
Query: 112 DLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCV 171
L GN + + D V W++ + + + + D V
Sbjct: 314 PLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGD------RVNYIRQKLD------V 361
Query: 172 QSFEGHQSDVNSVKFHPSGDAVATGSDDATCR 203
Q GH + G + S + R
Sbjct: 362 QYQPGHNHASLTESRDADGKWLVVLSKFSKDR 393
Score = 31.4 bits (71), Expect = 0.13
Identities = 35/286 (12%), Positives = 67/286 (23%), Gaps = 60/286 (20%)
Query: 16 TMPATWVMACAYAPSGSVVASGGLDNKVTVY----AIALEDDSSAKKKTVATHTSFISCC 71
TM W + + G T Y A+ L + V
Sbjct: 165 TMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224
Query: 72 IFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDK 131
+ + + S + S+ + + +P + +G
Sbjct: 225 AVKAGNFKTIGDSK--VPVVDGRGESEFTRYIPVPKNPHGL-NTSP-DGKYFIANGKLSP 280
Query: 132 LVNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGD 191
V++ + FE L + + F G+
Sbjct: 281 TVSVIAIDK--LDDLFEDKIELRD--------------TIVAEPELGLGPLHTTFDGRGN 324
Query: 192 AVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 251
A T D+ +++ + Y D + +Y D
Sbjct: 325 AYTTLFIDSQVCKWNI--ADAIKHYNGDRV---------------------NYIRQKLD- 360
Query: 252 LKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRY 297
V + GH + DG S + SK+R+
Sbjct: 361 -----VQYQPGHNHASLTESRDADGKWLVVLS-------KFSKDRF 394
Score = 30.3 bits (68), Expect = 0.30
Identities = 36/293 (12%), Positives = 72/293 (24%), Gaps = 56/293 (19%)
Query: 26 AYAPSGS-----VVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQI 80
A+ G SGG +V V + + + F
Sbjct: 1 AHVAPGELDEYYGFWSGGHQGEVRVLGVP-------SMRELMRIPVFNVDS--------- 44
Query: 81 LTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT------FVSGSSDKLVN 134
TG G ES ++L + S T F++ ++ V
Sbjct: 45 ATGWG------ITNESKEILGGDQQYLNGDCHHP-HISMTDGRYDGKYLFINDKANTRVA 97
Query: 135 IWDMRTGYCVQSFE-----GHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPS 189
+ + H L +T Y + E N
Sbjct: 98 RIRLDIMKTDKITHIPNVQAIHGLRLQK------VPKTNYVFCNAEFVIPQPNDGT---- 147
Query: 190 GDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAG-YNDYTINV 248
S D + +F + + + + + D +G+ + YN
Sbjct: 148 -----DFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVD 202
Query: 249 WDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYVQYL 301
+ ++ N G + G + D ++ + +Y+
Sbjct: 203 LAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI 254
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 40.3 bits (93), Expect = 2e-04
Identities = 16/197 (8%), Positives = 47/197 (23%), Gaps = 19/197 (9%)
Query: 112 DLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHN--------------LITDD 157
V+ + + D + V+ + + +I D
Sbjct: 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD 82
Query: 158 KLVNIWDMRTGYC-----VQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKE 212
+++ D+ ++ +S +S G+ E
Sbjct: 83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142
Query: 213 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQV 272
+ T +++ + + + +V + + +
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 202
Query: 273 SPDGTAFSSGSWDTTLR 289
+ G WD++ R
Sbjct: 203 IGAAPFLADGGWDSSHR 219
Score = 39.6 bits (91), Expect = 4e-04
Identities = 30/282 (10%), Positives = 70/282 (24%), Gaps = 28/282 (9%)
Query: 49 ALEDDSSAKKKTVATHTSFISCCIFPNSDQQIL-TGSGDCTCALWDVESSQLLQSFHGHT 107
+ + + K V + T AL D +S ++++
Sbjct: 3 GMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY 62
Query: 108 GELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYC-----VQSFEGHHNLITD------ 156
S +G + D +++ D+ ++ ++ +
Sbjct: 63 A---VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE 119
Query: 157 ----------DKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGD-AVATGSDDATCRLF 205
I D T Q V++ +HP A S + +
Sbjct: 120 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179
Query: 206 DLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHEN 265
+++ +V I +V + L G D + + + +
Sbjct: 180 NVKETGKVLLVNYKDI--DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237
Query: 266 RVSCLQVSPDGTAFSSGSWDTTLRDEESKNRYVQYLLRSRIT 307
+ G G + + +L I+
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS 279
Score = 38.0 bits (87), Expect = 0.001
Identities = 35/270 (12%), Positives = 70/270 (25%), Gaps = 28/270 (10%)
Query: 2 IIWDGLTQTKEHSVTMPATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTV 61
I DG T + V+ V Y P V A + + +++ + K V
Sbjct: 134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH-PEFIVNVKE--TGKVLLV 190
Query: 62 ATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETG 121
+ + G D + + ++ + + + L
Sbjct: 191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 250
Query: 122 NTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLITD-DKLVNIWDMRTGYCVQSFEGHQSD 180
G N + G + I+ V +G
Sbjct: 251 PHPGRG-----ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 305
Query: 181 VNSVKFHPSGDAVA-------TGSDDATCRLFD---LRADKEVACYKKDSILF----GAT 226
+K HP + + +FD L A +V + + L
Sbjct: 306 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV 365
Query: 227 SVDFSVSGR-LLFAGYN----DYTINVWDS 251
+++ G + F+ +N + V D
Sbjct: 366 QPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 39.1 bits (89), Expect = 4e-04
Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 82 TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT-FVSGSSDKLVNIWDMRT 140
S ++ DV S+++ + + + S G +V+ + V+I D T
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN---PMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 141 GYCVQSFEGHHNLITDDKLVNIWDMRTGYC 170
+ + + + +
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNM 93
Score = 35.6 bits (80), Expect = 0.005
Identities = 11/82 (13%), Positives = 18/82 (21%), Gaps = 2/82 (2%)
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGD-A 192
+ N+ V++ D T D + P G
Sbjct: 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV 258
Query: 193 VATGSDDATCRLFDLRADKEVA 214
S T + D + A
Sbjct: 259 YVALSFCNTVSVIDTATNTITA 280
Score = 34.5 bits (77), Expect = 0.011
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 192 AVATGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLF-AGYNDYTINVWD 250
A S+ + D+ ++K A S S G ++ A + +++ D
Sbjct: 4 AYIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIID 60
Query: 251 SLKCCRVNHLMGHENRVSC 269
+ + + +
Sbjct: 61 TATNNVIATVPAGSSPQGV 79
Score = 34.1 bits (76), Expect = 0.016
Identities = 24/203 (11%), Positives = 53/203 (26%), Gaps = 18/203 (8%)
Query: 124 FVSGSSDKLVNIWDMRTGYCVQSFEGHHNLI---------------TDDKLVNIWDMRTG 168
+++ S +++ D+ + + N + V+I D T
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 169 YCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKEVACYKKDSILFGATSV 228
+ + S T +T + D ++ K +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---KSPLGL 121
Query: 229 DFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWDTTL 288
S G+ L+ N + V + + + V+PDGT ++D+
Sbjct: 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS 181
Query: 289 RDEESKNRYVQYLLRSRITKPTQ 311
P+
Sbjct: 182 ISVIDTVTNSVIDTVKVEAAPSG 204
Score = 34.1 bits (76), Expect = 0.018
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 4/87 (4%)
Query: 63 THTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGN 122
S I+ T ++ D ++++ +A + G
Sbjct: 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPA---GIAVTPDGK 256
Query: 123 T-FVSGSSDKLVNIWDMRTGYCVQSFE 148
+V+ S V++ D T +
Sbjct: 257 KVYVALSFCNTVSVIDTATNTITATMA 283
Score = 32.5 bits (72), Expect = 0.054
Identities = 27/267 (10%), Positives = 75/267 (28%), Gaps = 17/267 (6%)
Query: 36 SGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVE 95
+ + ++V + S+ T+ ++ + I P+ + + + ++ D
Sbjct: 7 ANSESDNISVIDVT----SNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62
Query: 96 SSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIWDMRTGYCVQSFEGHHNLIT 155
++ ++ + + + SS V T +
Sbjct: 63 TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLA 122
Query: 156 DD---KLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATGSDDATCRLFDLRADKE 212
K + + + ++ +N+V S +A D + + +
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182
Query: 213 VACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDSLKCCRVNHLMG---------H 263
+ + V+ + SG + + D G
Sbjct: 183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242
Query: 264 ENRVSCLQVSPDG-TAFSSGSWDTTLR 289
+ + V+PDG + + S+ T+
Sbjct: 243 GPDPAGIAVTPDGKKVYVALSFCNTVS 269
Score = 29.8 bits (65), Expect = 0.38
Identities = 4/45 (8%), Positives = 15/45 (33%)
Query: 59 KTVATHTSFISCCIFPNSDQQILTGSGDCTCALWDVESSQLLQSF 103
+ + P+ + + S T ++ D ++ + +
Sbjct: 238 ARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 34.4 bits (77), Expect = 0.016
Identities = 7/95 (7%), Positives = 26/95 (27%), Gaps = 4/95 (4%)
Query: 195 TGSDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFA-GYNDYTINVWD--- 250
+ +++L + + + + + S R L+ ++ + +
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 251 SLKCCRVNHLMGHENRVSCLQVSPDGTAFSSGSWD 285
++ + G GS++
Sbjct: 69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN 103
Score = 27.5 bits (59), Expect = 2.2
Identities = 11/102 (10%), Positives = 25/102 (24%), Gaps = 3/102 (2%)
Query: 76 SDQQIL--TGSGDCTCALWDVESSQLLQSFHGHTGELMDLDLAPSETGNT-FVSGSSDKL 132
S +Q + +W++ L + S +V +
Sbjct: 1 SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60
Query: 133 VNIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSF 174
V + + +F L ++ V S+
Sbjct: 61 VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY 102
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 32.7 bits (73), Expect = 0.049
Identities = 25/234 (10%), Positives = 60/234 (25%), Gaps = 25/234 (10%)
Query: 18 PATWVMACAYAPSGSVVASGGLDNKVTVYAIALEDDSSAKKKTVATHTSFISCCIFPNSD 77
T++ A AP G++ + ++ ++ AT +S F ++
Sbjct: 26 VNTFLENLASAPDGTIFVTNHEVGEIVSI------TPDGNQQIHATVEGKVSGLAFTSNG 79
Query: 78 QQILTGSGDCT-CALWDVESSQLLQSFHGHTGELMDLDLAPSETGNTFVSGSSDKLVNIW 136
+ TG + + V+S +++ + + P + S + +
Sbjct: 80 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLI 139
Query: 137 DMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSVKFHPSGDAVATG 196
D+ E ++ + V ++ + P G
Sbjct: 140 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG 199
Query: 197 SDDATCRLFDLRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWD 250
+ F V G L A + ++
Sbjct: 200 EPEIFVE------------------QTNIDDFAFDVEGNLYGATHIYNSVVRIA 235
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 30.5 bits (69), Expect = 0.24
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 8 TQTKEHSVTMP-ATWVMACAYAPSGS-VVASGGLDNKVTVYAIALEDDSSAKKK 59
+ + +P A C AP + +G L VTV + D +
Sbjct: 262 EASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 315
>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA
{Borrelia burgdorferi [TaxId: 139]}
Length = 322
Score = 27.5 bits (61), Expect = 2.3
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 23 MACAYAPSGSVVASGGLDNKVTVYAI--ALEDDSSAKKKTV 61
A +++ + G D+K+ V+ ++ D KT
Sbjct: 102 TAKDVGFDKALIGAYGQDDKICVFTSLESIFDLEETPNKTA 142
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga
maritima [TaxId: 2336]}
Length = 433
Score = 26.4 bits (57), Expect = 5.4
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 134 NIWDMRTGYCVQSFEGHHNLITDDKLVNIWDMRTGYCVQSFEGHQSDVNSV 184
G + + ++L+ +M G + EG + NS+
Sbjct: 321 TGNGFVGGIRPVNLMLMPGEKSFEELLK--EMDRGVVITEVEGMHAGANSI 369
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase,
C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 270
Score = 25.7 bits (56), Expect = 8.7
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 197 SDDATCRLFD-----LRADKEVACYKKDSILFGATSVDFSVSGRLLFAGYNDYTINVWDS 251
++D + +R + + G T + + +G+L AG V +S
Sbjct: 90 ANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKLFAAGQAGERFAVRNS 149
Query: 252 LKCC 255
Sbjct: 150 GATV 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.411
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,175,644
Number of extensions: 50645
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 146
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)