BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14962
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
A +ELL ++ EGAK LD+GSGSG ++ FA +VG TG+V G++H++E +D+ V
Sbjct: 64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR 123
Query: 63 RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
+ P LL+ GR+ L DGR G +AP+DAI++ P +P +++ QLKPGGRL+ VG
Sbjct: 124 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 183
Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
+ + D+ +DG+ K + + PL + ++Q W
Sbjct: 184 PAGGNQMLEQYDKLQDGSIKMKPLMGV--IYVPLTDKEKQWSRW 225
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-----RVFGVEHMREQCEDA 57
A +E L ++ GA++LD+GSGSG+++ F + G R+ G+EH E +
Sbjct: 71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS 130
Query: 58 WETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRL 117
+ +L+ G+L + DGR G AP++AI++ P+ P ++ QL GGRL
Sbjct: 131 KANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRL 190
Query: 118 VCGVGKSKSYHRMTVIDRSEDG 139
+ VG M D+ +G
Sbjct: 191 IVPVGPDGGSQYMQQYDKDANG 212
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
+ +G +VL+IG G+G+ + V + +VG+ G V VE+ R+ CE A V R L
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIEN 127
Query: 74 LHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVI 133
+ C DG G+ +P+D I+++ V E+P + QLK GGR++ + S + +
Sbjct: 128 VIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFL 187
Query: 134 DRSEDGTHFQKYEI 147
+ +D Y++
Sbjct: 188 FKKKDPYLVGNYKL 201
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
ELL+ ++ G KVL+IG+G G+ + V AE+VG+ G V +E + E E A T+ ++ D
Sbjct: 71 ELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD 128
Query: 68 LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
+ + DG G AP+D IY + P+IP ++ QLK GG+L+ VG+
Sbjct: 129 -----NVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR 179
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
AR+ ELLE Q ++VL+IG+GSG+ + + A LV V ++ ++ W+ R
Sbjct: 67 ARMTELLELTPQ--SRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQ------WQARRR 118
Query: 64 IRP-DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
++ DL N + R DG G +APFDAI ++ PEIP +++ QL GG LV VG
Sbjct: 119 LKNLDLHN---VSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG 175
Query: 123 KSKSY 127
+ Y
Sbjct: 176 EEHQY 180
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
++ G +L++G+GSG+ + + +E+V KT V+ +E + E E A + R
Sbjct: 89 LKPGMNILEVGTGSGWNAALISEIV-KT-DVYTIERIPELVEFAKRNLER-----AGVKN 141
Query: 74 LHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVI 133
+H+ DG G +AP+D I ++ P+IP ++ QLK GG+L+ VG + + +
Sbjct: 142 VHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEV 201
Query: 134 DRSEDGTHFQKY 145
+++DG + +
Sbjct: 202 RKTKDGIKIKNH 213
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 22/134 (16%)
Query: 1 MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFA----ELVGKTGRVFGVEHMREQCED 56
+ R+I +L+P G++ +D+GSGSG+++ A L K V G+E +++
Sbjct: 69 LSLKRLINVLKP----GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNF 124
Query: 57 AWETVMRIRPDLLNDGRLHLRCRD---------GRTGLLHQAPFDAIYLSTYVPEIPYSI 107
+ E + R +P+LL + ++ GL FDAI++ E+P +
Sbjct: 125 SLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGL-----FDAIHVGASASELPEIL 179
Query: 108 LLQLKPGGRLVCGV 121
+ L G+L+ +
Sbjct: 180 VDLLAENGKLIIPI 193
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 7 IELLEPK-------IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
+EL +P+ ++EG VLD+G+G+GF +++VG+ G+V+ ++ E AWE
Sbjct: 21 LELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80
Query: 60 TVMRI 64
V ++
Sbjct: 81 KVNKL 85
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
++EG +++D G GSG M V A VG +G+VF E E + A + + L+ R
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--GLIE--R 165
Query: 74 LHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRL--VC 119
+ ++ RD G + DA++L VP+ P++ + + LK GGR VC
Sbjct: 166 VTIKVRDISEG-FDEKDVDALFLD--VPD-PWNYIDKCWEALKGGGRFATVC 213
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
I L E + +G KVL+IG+G G+ + + AE+V K V E E + ++
Sbjct: 60 IFXLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSV-------EINEKXYNYASKLL 112
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEI---PYSILLQLKPGGRLV--CG 120
N + L DG G + P+D + + P + PY QLK GG + G
Sbjct: 113 SYYNN---IKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYE---QLKEGGIXILPIG 166
Query: 121 VGKSKSYHRM 130
VG+ + +++
Sbjct: 167 VGRVQKLYKV 176
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCE----------DAWE-TVM 62
I G VL+ GSGSG MS ++ VG GRV E ++ + D+W+ + +
Sbjct: 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV 162
Query: 63 RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILL-QLKPGGRLVCGV 121
PD N +H + G T + FDA+ L P + + LK GG VC V
Sbjct: 163 EEWPD--NVDFIH-KDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGG--VCAV 217
Query: 122 GKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHFQK 181
+T + DG + +S E ++ +WL ++ ++G QK
Sbjct: 218 ----YVVNITQVIELLDGIRTCELALSCEKISEVIVR------DWLVCLAKQKNGILAQK 267
Query: 182 YEISLENFINPLINADEQ 199
+E+ IN + D Q
Sbjct: 268 ----VESKINTDVQLDSQ 281
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD- 67
L+E ++EG ++L +G SG + ++++G GR++GVE D TV+R R +
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDRRNI 128
Query: 68 --LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSIL----LQLKPGGRLVCGV 121
+L D R + R G+ D +Y PE ++ L+ GG ++ +
Sbjct: 129 FPILGDARFPEKYRHLVEGV------DGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI 182
Query: 122 GKSKSYHRMTVIDRSEDGTHFQKYEIS 148
K++S ID + + + K EI
Sbjct: 183 -KARS------IDVTTEPSEVYKREIK 202
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
+++ G K+L+IG G G +S V A+ VG +G V G++
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
EGA VLD+G G+G + ++LVG+ G+V GV+ + Q E A + V
Sbjct: 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYV 128
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
I G +++ G GSG ++ A +VG GRV E + + AWE + D R
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG----FDDR 146
Query: 74 LHLRCRDGRTGLLHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVC 119
+ ++ +D G + + D + L PE + LKPGG V
Sbjct: 147 VTIKLKDIYEG-IEEENVDHVILDLPQPERVVEHAAKALKPGGFFVA 192
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
I G +++ G GSG ++ A +VG GRV E + + AWE + D R
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG----FDDR 146
Query: 74 LHLRCRDGRTGLLHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVC 119
+ ++ +D G + + D + L PE + LKPGG V
Sbjct: 147 VTIKLKDIYEG-IEEENVDHVILDLPQPERVVEHAAKALKPGGFFVA 192
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL--LND 71
+QE ++LDIG GSG +S EL K V G++ E A ET R P L
Sbjct: 28 LQEDDEILDIGCGSGKISL---ELASKGYSVTGIDINSEAIRLA-ETAAR-SPGLNQKTG 82
Query: 72 GRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIP---------YSILLQLKPGGRL 117
G+ + + + H + FD + ++ +P + LKPG L
Sbjct: 83 GKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYL 137
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 33.9 bits (76), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 121 VGKSKSYHRMTVIDRSEDGTHFQKYEISL-----ENFINPLINADEQNDNWLYQQSRSED 175
+G ++ + + EDG Q ++L E + PLI A ++++W + +
Sbjct: 72 IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKA-LKDEDWFVRIA---- 126
Query: 176 GTHFQKYEISLENFINPLINADEQNDNWLYQQSRNHV 212
F EI E + PLI A + D W+ Q + + +
Sbjct: 127 -AAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 162
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 121 VGKSKSYHRMTVIDRSEDGTHFQKYEISL-----ENFINPLINADEQNDNWLYQQSRSED 175
+G ++ + + EDG Q ++L E + PLI A ++++W + +
Sbjct: 77 IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKA-LKDEDWFVRIA---- 131
Query: 176 GTHFQKYEISLENFINPLINADEQNDNWLYQQSRNHV 212
F EI E + PLI A + D W+ Q + + +
Sbjct: 132 -AAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 167
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI----RPDLL 69
++EG V+D G+G + A LVG+ GRVFG + + + + + + R L+
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 79
Query: 70 NDG 72
DG
Sbjct: 80 KDG 82
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 11 EPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
E I GA+VL+ G+GSG ++ VG G+V E + E A V
Sbjct: 94 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 144
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCED 56
I+ GAKVL +G+ SG +++VG G V+ VE D
Sbjct: 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD 117
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 24/145 (16%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR--IRPDLLND 71
++ G KVLD+G+GSG ++ + AE +G G+ GV+ A R +RP L +
Sbjct: 118 LRPGDKVLDLGTGSGVLA-IAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFL-E 173
Query: 72 GRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGR-LVCGVGKSKS 126
G L G PFD + + Y E+ ++ + L PGGR L+ G+ K
Sbjct: 174 GSLEAALPFG--------PFDLLVANLYA-ELHAALAPRYREALVPGGRALLTGILKD-- 222
Query: 127 YHRMTVIDRSEDGTHFQKYEISLEN 151
R ++ + G F+ E + E
Sbjct: 223 --RAPLVREAMAGAGFRPLEEAAEG 245
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 24/145 (16%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR--IRPDLLND 71
++ G KVLD+G+GSG ++ + AE +G G+ GV+ A R +RP L +
Sbjct: 118 LRPGDKVLDLGTGSGVLA-IAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFL-E 173
Query: 72 GRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGR-LVCGVGKSKS 126
G L G PFD + + Y E+ ++ + L PGGR L+ G+ K
Sbjct: 174 GSLEAALPFG--------PFDLLVANLYA-ELHAALAPRYREALVPGGRALLTGILKD-- 222
Query: 127 YHRMTVIDRSEDGTHFQKYEISLEN 151
R ++ + G F+ E + E
Sbjct: 223 --RAPLVREAMAGAGFRPLEEAAEG 245
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
pdb|4HVC|B Chain B, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
Length = 519
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 103 IPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRS 136
IP+ L +L+PG + VCG +K Y T+ RS
Sbjct: 488 IPFKPLCELQPGAKCVCGKNPAKYY---TLFGRS 518
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 35 AELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94
E VG RV GV + E E + T + +DGRL + PF
Sbjct: 286 TEPVGVVCRVDGVYQVVEYSEISLATAQKRS----SDGRLLFNAGNIANHFF-TVPFLRD 340
Query: 95 YLSTYVPEIPYSILLQLKP----GGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLE 150
++ Y P++ + + + P G+L+ + V D + F YE+ E
Sbjct: 341 VVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLRE 400
Query: 151 NFINPLINADEQN 163
+ +PL NAD QN
Sbjct: 401 DEFSPLKNADSQN 413
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 9/133 (6%)
Query: 35 AELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94
E VG RV GV + E E + T + +DGRL + PF
Sbjct: 286 TEPVGVVCRVDGVYQVVEYSEISLATAQKRS----SDGRLLFNAGNIANHFF-TVPFLRD 340
Query: 95 YLSTYVPEIPYSILLQLKP----GGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLE 150
++ Y P++ + + + P G+L+ + V D + F YE+ E
Sbjct: 341 VVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLRE 400
Query: 151 NFINPLINADEQN 163
+ +PL NAD QN
Sbjct: 401 DEFSPLKNADSQN 413
>pdb|3ID5|B Chain B, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|F Chain F, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID6|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
pdb|3PLA|E Chain E, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|F Chain F, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|M Chain M, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 232
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD---LLN 70
I++G KVL +G+ SG ++++ G+ +GVE + R RP+ LL
Sbjct: 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLA 132
Query: 71 DGRL 74
D R
Sbjct: 133 DARF 136
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
I+ G VL +G SG + +++VG G++FG+E
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIE 105
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
pdb|1VM8|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
Length = 534
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 9/133 (6%)
Query: 35 AELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94
E VG RV GV + E E + T R +DGRL + PF
Sbjct: 298 TEPVGVVCRVDGVYQVVEYSEISLATAQRRS----SDGRLLFNAGNIANHFF-TVPFLKD 352
Query: 95 YLSTYVPEIPYSILLQLKP----GGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLE 150
++ Y P++ + + + P G + + V D + F YE+ E
Sbjct: 353 VVNVYEPQLQHHVAQKKIPYVDSQGYFIKPDKPNGIKXEKFVFDIFQFAKKFVVYEVLRE 412
Query: 151 NFINPLINADEQN 163
+ +PL NAD QN
Sbjct: 413 DEFSPLKNADSQN 425
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
Q + ++LL +IQ +L+IG+ G+ + A + GRV +E + + A +
Sbjct: 46 QGKFLQLL-VQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIE 104
Query: 63 RIRPDLLNDGRLHLRCRDGRTGL----LHQA------PFDAIYLSTYVPEIP--YSILLQ 110
R LND R+ + RTGL L Q PFD I++ P + L+
Sbjct: 105 RAN---LND-RVEV-----RTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALK 155
Query: 111 LKPGGRLVCG 120
L G ++ G
Sbjct: 156 LSRPGTVIIG 165
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTG 42
+ + G ++LD+GSGSG C +A G TG
Sbjct: 33 RXKPGTRILDLGSGSGEXLCTWARDHGITG 62
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
I+ G VL +G SG + +++VG G+++G+E
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 105
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
I+ G VL +G SG + +++VG G+++G+E
Sbjct: 78 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 112
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 20 VLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
VLD+GSG+G + C+FA G +V G+E
Sbjct: 74 VLDVGSGTGIL-CMFAAKAG-ARKVIGIE 100
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
++ + AK+ DIG G+G + A+ V G++ G++ + E + N+
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIE------------IFNEN 88
Query: 73 RLHLRCRD---GRTGLLHQAPF 91
+ C D G TG + PF
Sbjct: 89 AVKANCADRVKGITGSMDNLPF 110
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
++ + AK+ DIG G+G + A+ V G++ G++ + E + N+
Sbjct: 49 ELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIE------------IFNEN 94
Query: 73 RLHLRCRD---GRTGLLHQAPF 91
+ C D G TG + PF
Sbjct: 95 AVKANCADRVKGITGSMDNLPF 116
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 20 VLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
VLD+GSG+G + C+FA G +V G+E
Sbjct: 70 VLDVGSGTGIL-CMFAAKAG-ARKVIGIE 96
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRV 44
+ G +VL+ G+GSG ++ A VG+ G V
Sbjct: 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLV 124
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 72 GRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMT 131
G L L+ R GR L+ P + + +P+ LL+ PGG + +G+ S HR T
Sbjct: 8 GPLLLKDRKGRAYLVF--PKEGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPT 65
Query: 132 V 132
+
Sbjct: 66 L 66
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 20 VLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
VLD+GSG+G + C+FA G +V G+E
Sbjct: 61 VLDVGSGTGIL-CMFAAKAG-ARKVIGIE 87
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 20 VLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
VLD+GSG+G + C+FA G +V G+E
Sbjct: 64 VLDVGSGTGIL-CMFAAKAG-ARKVIGIE 90
>pdb|3E05|A Chain A, Crystal Structure Of Precorrin-6y
C5,15-Methyltransferase From Geobacter Metallireducens
Gs-15
pdb|3E05|B Chain B, Crystal Structure Of Precorrin-6y
C5,15-Methyltransferase From Geobacter Metallireducens
Gs-15
pdb|3E05|C Chain C, Crystal Structure Of Precorrin-6y
C5,15-Methyltransferase From Geobacter Metallireducens
Gs-15
pdb|3E05|D Chain D, Crystal Structure Of Precorrin-6y
C5,15-Methyltransferase From Geobacter Metallireducens
Gs-15
pdb|3E05|E Chain E, Crystal Structure Of Precorrin-6y
C5,15-Methyltransferase From Geobacter Metallireducens
Gs-15
pdb|3E05|F Chain F, Crystal Structure Of Precorrin-6y
C5,15-Methyltransferase From Geobacter Metallireducens
Gs-15
pdb|3E05|G Chain G, Crystal Structure Of Precorrin-6y
C5,15-Methyltransferase From Geobacter Metallireducens
Gs-15
pdb|3E05|H Chain H, Crystal Structure Of Precorrin-6y
C5,15-Methyltransferase From Geobacter Metallireducens
Gs-15
Length = 204
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH 49
Q+ R + L + ++Q+ + DIG+GS +S + L+ GR+F +E
Sbjct: 26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALER 72
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
A ++E +EP G ++ DIG G+G + + A+ TG E + E A ET
Sbjct: 25 AWVLEQVEP----GKRIADIGCGTGTATLLLADHYEVTGVDLSEEXLEIAQEKAXET 77
>pdb|3HXR|A Chain A, Nucleoporin Nup120 From S.Cerevisiae (Aa 1-757)
Length = 761
Score = 26.9 bits (58), Expect = 7.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 146 EISLENFINP----LINADEQNDNWLYQQSRSEDGTHFQKYEISLENFINPLIN 195
EI L N P L + +NW Y DG+ KY +L F + L N
Sbjct: 473 EIILVNCFQPYNHSLYKLNTTVENWFYNXHSETDGSELFKYLRTLNGFASTLSN 526
>pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 464
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 144 KYEISLENFINPLINADEQNDNWLYQQSRS---EDGTHFQKYEISLENFINPLINADEQN 200
KY++S+ N+ NA + + LY ++R+ +G +F Y D N
Sbjct: 341 KYQLSVSNYKGNAGNALMEGASQLYGENRTMTIHNGMYFSTY--------------DRDN 386
Query: 201 DNWLYQQSRNHVLKE 215
D WL R KE
Sbjct: 387 DGWLTTDPRKQCSKE 401
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,077,247
Number of Sequences: 62578
Number of extensions: 305854
Number of successful extensions: 688
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 57
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)