Query psy14962
Match_columns 216
No_of_seqs 171 out of 2432
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 17:00:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 99.9 5.6E-21 1.2E-25 142.4 17.4 144 2-158 60-203 (209)
2 PF01135 PCMT: Protein-L-isoas 99.9 5.5E-21 1.2E-25 145.0 15.9 148 2-159 60-207 (209)
3 PRK13942 protein-L-isoaspartat 99.8 2E-19 4.4E-24 137.6 18.3 146 2-159 64-209 (212)
4 TIGR00080 pimt protein-L-isoas 99.8 9.3E-19 2E-23 134.4 18.9 147 2-160 65-211 (215)
5 PRK13944 protein-L-isoaspartat 99.8 8.7E-19 1.9E-23 133.6 18.5 145 2-156 60-204 (205)
6 PF01209 Ubie_methyltran: ubiE 99.8 1.9E-20 4E-25 144.8 8.5 106 14-124 45-156 (233)
7 COG2226 UbiE Methylase involve 99.8 1E-18 2.2E-23 134.1 13.3 106 14-125 49-160 (238)
8 KOG1661|consensus 99.8 4.9E-18 1.1E-22 125.1 14.2 160 2-163 68-233 (237)
9 PRK00312 pcm protein-L-isoaspa 99.8 9.2E-17 2E-21 123.2 18.6 142 3-158 67-208 (212)
10 PF12847 Methyltransf_18: Meth 99.7 2.8E-17 6E-22 113.3 11.6 101 16-121 1-111 (112)
11 PLN02233 ubiquinone biosynthes 99.7 2.2E-16 4.8E-21 124.5 14.8 109 14-124 71-185 (261)
12 PLN02396 hexaprenyldihydroxybe 99.7 1E-17 2.2E-22 135.0 7.0 104 15-125 130-239 (322)
13 TIGR02752 MenG_heptapren 2-hep 99.7 6.2E-16 1.3E-20 120.1 15.0 106 14-124 43-154 (231)
14 PF13847 Methyltransf_31: Meth 99.7 3.3E-16 7.2E-21 113.9 12.1 103 15-123 2-112 (152)
15 PRK13943 protein-L-isoaspartat 99.7 2.4E-15 5.3E-20 121.2 17.3 115 3-124 69-183 (322)
16 PLN02244 tocopherol O-methyltr 99.7 8.9E-16 1.9E-20 125.5 14.8 103 15-123 117-225 (340)
17 PRK11036 putative S-adenosyl-L 99.7 1.1E-16 2.5E-21 126.0 8.6 104 15-125 43-153 (255)
18 PRK00107 gidB 16S rRNA methylt 99.7 1.4E-15 2.9E-20 113.8 13.3 105 13-124 42-148 (187)
19 COG2227 UbiG 2-polyprenyl-3-me 99.7 1E-16 2.2E-21 121.3 7.0 101 16-125 59-165 (243)
20 PRK15068 tRNA mo(5)U34 methylt 99.7 2.5E-15 5.4E-20 121.8 13.7 100 15-121 121-226 (322)
21 COG2230 Cfa Cyclopropane fatty 99.7 2.1E-15 4.6E-20 117.9 12.7 110 4-124 62-179 (283)
22 PF08241 Methyltransf_11: Meth 99.6 8.6E-16 1.9E-20 102.4 8.6 89 21-119 1-95 (95)
23 PF02353 CMAS: Mycolic acid cy 99.6 1.7E-15 3.7E-20 119.7 11.6 109 3-122 51-167 (273)
24 TIGR02469 CbiT precorrin-6Y C5 99.6 1.5E-14 3.2E-19 101.3 14.5 110 5-122 10-123 (124)
25 PRK15451 tRNA cmo(5)U34 methyl 99.6 4.8E-15 1E-19 116.2 12.9 103 13-121 53-164 (247)
26 COG2242 CobL Precorrin-6B meth 99.6 1.4E-14 3E-19 106.0 14.3 113 6-126 26-140 (187)
27 PRK14103 trans-aconitate 2-met 99.6 5.1E-15 1.1E-19 116.6 12.3 103 5-123 20-128 (255)
28 PF05175 MTS: Methyltransferas 99.6 1E-14 2.2E-19 108.0 13.0 102 16-124 31-143 (170)
29 PRK11873 arsM arsenite S-adeno 99.6 9.7E-15 2.1E-19 116.1 13.6 105 13-122 74-184 (272)
30 PRK11207 tellurite resistance 99.6 1.2E-14 2.6E-19 110.1 13.3 104 6-120 22-133 (197)
31 PTZ00098 phosphoethanolamine N 99.6 8.7E-15 1.9E-19 115.6 12.7 101 14-123 50-158 (263)
32 TIGR00138 gidB 16S rRNA methyl 99.6 8.6E-15 1.9E-19 109.2 11.7 100 16-123 42-144 (181)
33 PRK10258 biotin biosynthesis p 99.6 7.6E-15 1.7E-19 115.4 11.0 99 15-126 41-145 (251)
34 COG2519 GCD14 tRNA(1-methylade 99.6 3E-14 6.5E-19 108.8 13.6 116 4-126 84-200 (256)
35 TIGR00477 tehB tellurite resis 99.6 2.5E-14 5.4E-19 108.2 13.2 105 4-120 20-132 (195)
36 TIGR00740 methyltransferase, p 99.6 3.4E-14 7.3E-19 110.9 13.9 103 14-122 51-162 (239)
37 PRK04266 fibrillarin; Provisio 99.6 4.4E-14 9.6E-19 108.8 14.0 102 13-122 69-177 (226)
38 PRK00377 cbiT cobalt-precorrin 99.6 3.2E-14 7E-19 107.9 13.1 108 13-124 37-148 (198)
39 PRK01683 trans-aconitate 2-met 99.6 3.4E-14 7.4E-19 112.1 13.5 105 5-123 22-132 (258)
40 PRK00121 trmB tRNA (guanine-N( 99.6 2E-14 4.3E-19 109.3 10.8 104 16-125 40-160 (202)
41 smart00828 PKS_MT Methyltransf 99.6 1.8E-14 4E-19 111.3 10.6 99 18-122 1-105 (224)
42 TIGR00452 methyltransferase, p 99.6 4.5E-14 9.8E-19 113.5 13.0 102 14-122 119-226 (314)
43 PRK08287 cobalt-precorrin-6Y C 99.6 1.4E-13 3.1E-18 103.4 15.0 101 14-122 29-132 (187)
44 PRK08317 hypothetical protein; 99.6 8.5E-14 1.9E-18 108.3 14.0 104 14-123 17-126 (241)
45 PLN02336 phosphoethanolamine N 99.6 5.9E-14 1.3E-18 119.9 14.0 108 6-123 258-371 (475)
46 PRK11088 rrmA 23S rRNA methylt 99.6 7.2E-14 1.6E-18 111.1 13.5 100 16-126 85-186 (272)
47 KOG1270|consensus 99.6 1.9E-15 4.2E-20 115.3 4.2 100 17-125 90-199 (282)
48 KOG1540|consensus 99.6 9.8E-14 2.1E-18 105.5 13.3 109 15-125 99-218 (296)
49 PF08704 GCD14: tRNA methyltra 99.6 8.6E-14 1.9E-18 107.9 13.3 117 4-126 30-151 (247)
50 COG4106 Tam Trans-aconitate me 99.6 2.3E-14 5E-19 106.4 8.7 99 14-124 28-132 (257)
51 TIGR00091 tRNA (guanine-N(7)-) 99.6 5E-14 1.1E-18 106.5 10.8 104 16-125 16-136 (194)
52 PF13649 Methyltransf_25: Meth 99.5 1.5E-14 3.2E-19 97.9 6.5 90 20-115 1-101 (101)
53 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.9E-13 4E-18 108.1 13.6 108 13-125 68-203 (264)
54 PRK15001 SAM-dependent 23S rib 99.5 2.1E-13 4.6E-18 112.0 14.2 102 17-122 229-341 (378)
55 PRK12335 tellurite resistance 99.5 2.4E-13 5.2E-18 108.8 13.1 96 16-121 120-223 (287)
56 PRK11705 cyclopropane fatty ac 99.5 2.4E-13 5.3E-18 112.6 13.2 98 14-124 165-270 (383)
57 TIGR02021 BchM-ChlM magnesium 99.5 2.3E-13 5E-18 104.8 12.1 105 5-119 44-156 (219)
58 PF08003 Methyltransf_9: Prote 99.5 1.6E-13 3.4E-18 107.7 11.0 99 16-123 115-221 (315)
59 PF13659 Methyltransf_26: Meth 99.5 4.2E-14 9.2E-19 98.1 7.1 100 17-122 1-116 (117)
60 TIGR02072 BioC biotin biosynth 99.5 1.8E-13 3.9E-18 106.5 11.4 112 4-125 21-139 (240)
61 TIGR00406 prmA ribosomal prote 99.5 3E-13 6.4E-18 108.3 12.8 108 7-122 150-260 (288)
62 TIGR00537 hemK_rel_arch HemK-r 99.5 1.7E-13 3.7E-18 102.3 10.7 100 15-125 18-144 (179)
63 PRK09489 rsmC 16S ribosomal RN 99.5 5.3E-13 1.2E-17 108.8 14.4 100 16-124 196-306 (342)
64 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.6E-13 5.7E-18 110.0 12.4 98 15-121 112-215 (340)
65 COG2264 PrmA Ribosomal protein 99.5 1.4E-13 3.1E-18 108.6 10.5 109 5-120 151-262 (300)
66 TIGR01177 conserved hypothetic 99.5 4.2E-13 9.2E-18 109.4 13.8 105 13-125 179-298 (329)
67 PRK14903 16S rRNA methyltransf 99.5 4E-13 8.6E-18 113.0 13.7 108 13-125 234-370 (431)
68 PTZ00146 fibrillarin; Provisio 99.5 5E-13 1.1E-17 105.4 13.3 114 3-123 118-239 (293)
69 PLN02781 Probable caffeoyl-CoA 99.5 1.5E-13 3.3E-18 106.6 9.8 110 6-120 59-177 (234)
70 TIGR03438 probable methyltrans 99.5 2.3E-13 5E-18 109.5 11.0 114 8-125 55-181 (301)
71 PRK07402 precorrin-6B methylas 99.5 1.1E-12 2.4E-17 99.3 13.9 105 14-124 38-145 (196)
72 COG4123 Predicted O-methyltran 99.5 3.2E-13 6.9E-18 103.9 10.8 106 14-124 42-173 (248)
73 PRK05785 hypothetical protein; 99.5 5.2E-13 1.1E-17 103.2 12.1 93 7-114 42-140 (226)
74 TIGR03533 L3_gln_methyl protei 99.5 7E-13 1.5E-17 105.8 13.2 103 16-124 121-254 (284)
75 PRK14901 16S rRNA methyltransf 99.5 6E-13 1.3E-17 112.3 13.5 106 14-124 250-387 (434)
76 PRK14967 putative methyltransf 99.5 6.2E-13 1.3E-17 102.7 12.4 102 14-124 34-162 (223)
77 PRK14904 16S rRNA methyltransf 99.5 9.7E-13 2.1E-17 111.4 14.6 106 14-125 248-381 (445)
78 COG2813 RsmC 16S RNA G1207 met 99.5 1.1E-12 2.4E-17 103.0 13.5 99 16-122 158-267 (300)
79 PF03848 TehB: Tellurite resis 99.5 8.3E-13 1.8E-17 98.4 12.1 106 5-122 21-134 (192)
80 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.1E-12 2.3E-17 107.6 13.4 105 15-125 121-239 (390)
81 PRK00216 ubiE ubiquinone/menaq 99.5 1.9E-12 4.1E-17 100.7 14.4 104 15-122 50-159 (239)
82 PF06325 PrmA: Ribosomal prote 99.5 2E-13 4.3E-18 108.6 8.8 106 5-120 150-258 (295)
83 PRK00517 prmA ribosomal protei 99.5 6.7E-13 1.5E-17 104.2 11.8 102 6-121 109-213 (250)
84 PRK06922 hypothetical protein; 99.5 5.4E-13 1.2E-17 114.8 11.8 101 15-122 417-538 (677)
85 PF13489 Methyltransf_23: Meth 99.5 3.9E-13 8.4E-18 98.3 9.3 102 6-125 12-119 (161)
86 PRK14966 unknown domain/N5-glu 99.5 1.8E-12 3.9E-17 106.9 13.8 111 7-124 242-384 (423)
87 TIGR03534 RF_mod_PrmC protein- 99.5 2.2E-12 4.8E-17 101.3 13.9 100 16-122 87-218 (251)
88 PF08242 Methyltransf_12: Meth 99.5 2.3E-14 5E-19 96.6 2.1 91 21-117 1-99 (99)
89 PRK14968 putative methyltransf 99.4 1.5E-12 3.2E-17 97.8 11.3 103 15-124 22-151 (188)
90 PF07021 MetW: Methionine bios 99.4 1.2E-13 2.5E-18 101.8 4.9 99 13-125 10-113 (193)
91 smart00138 MeTrc Methyltransfe 99.4 1.1E-12 2.4E-17 103.6 10.8 107 15-121 98-242 (264)
92 PRK10901 16S rRNA methyltransf 99.4 4.1E-12 8.9E-17 107.0 14.9 104 14-124 242-375 (427)
93 PLN02585 magnesium protoporphy 99.4 1.5E-12 3.1E-17 104.9 11.6 94 4-103 131-225 (315)
94 PRK11188 rrmJ 23S rRNA methylt 99.4 1E-12 2.2E-17 100.3 10.1 96 14-125 49-169 (209)
95 TIGR03704 PrmC_rel_meth putati 99.4 4.6E-12 1E-16 99.3 13.8 99 17-124 87-219 (251)
96 PRK14902 16S rRNA methyltransf 99.4 3.8E-12 8.2E-17 107.8 14.3 106 14-124 248-382 (444)
97 PRK11805 N5-glutamine S-adenos 99.4 2.8E-12 6.1E-17 103.3 12.6 101 18-124 135-266 (307)
98 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 5.1E-12 1.1E-16 97.3 13.6 102 15-123 38-145 (223)
99 PLN03075 nicotianamine synthas 99.4 6.3E-12 1.4E-16 99.6 13.8 104 16-123 123-235 (296)
100 TIGR03587 Pse_Me-ase pseudamin 99.4 4.6E-12 1E-16 96.3 12.5 96 13-122 40-143 (204)
101 TIGR00536 hemK_fam HemK family 99.4 7.5E-12 1.6E-16 100.1 14.2 101 18-124 116-247 (284)
102 TIGR03840 TMPT_Se_Te thiopurin 99.4 3.9E-12 8.5E-17 97.2 11.9 103 15-123 33-154 (213)
103 smart00650 rADc Ribosomal RNA 99.4 5.2E-12 1.1E-16 93.4 12.2 106 3-120 2-112 (169)
104 TIGR00563 rsmB ribosomal RNA s 99.4 6.3E-12 1.4E-16 105.9 14.3 107 14-125 236-372 (426)
105 PLN02476 O-methyltransferase 99.4 2.6E-12 5.6E-17 101.2 10.7 110 6-120 109-227 (278)
106 TIGR02716 C20_methyl_CrtF C-20 99.4 8.1E-12 1.8E-16 101.0 13.9 101 14-122 147-255 (306)
107 PRK13168 rumA 23S rRNA m(5)U19 99.4 3.3E-12 7.3E-17 108.1 11.8 112 3-125 286-404 (443)
108 COG4122 Predicted O-methyltran 99.4 4.6E-12 1E-16 96.1 10.6 111 5-120 49-165 (219)
109 PF01596 Methyltransf_3: O-met 99.4 9.5E-13 2.1E-17 99.8 6.5 110 6-120 36-154 (205)
110 PRK09328 N5-glutamine S-adenos 99.4 1.8E-11 3.8E-16 97.5 13.7 102 14-122 106-239 (275)
111 PLN02336 phosphoethanolamine N 99.4 8.6E-12 1.9E-16 106.7 12.6 99 15-123 36-144 (475)
112 PRK03522 rumB 23S rRNA methylu 99.4 9.2E-12 2E-16 101.0 12.0 110 16-133 173-286 (315)
113 PRK00811 spermidine synthase; 99.4 1E-11 2.2E-16 99.1 11.7 109 15-124 75-194 (283)
114 PRK06202 hypothetical protein; 99.4 1.1E-11 2.3E-16 96.4 11.3 97 15-121 59-166 (232)
115 PF05401 NodS: Nodulation prot 99.4 3.4E-12 7.3E-17 94.4 7.9 96 16-122 43-147 (201)
116 PRK10909 rsmD 16S rRNA m(2)G96 99.4 2.1E-11 4.7E-16 92.0 12.5 111 6-124 44-162 (199)
117 TIGR00438 rrmJ cell division p 99.4 1.3E-11 2.8E-16 92.9 11.2 96 13-124 29-149 (188)
118 KOG4300|consensus 99.3 3.7E-12 7.9E-17 94.1 7.7 97 18-121 78-182 (252)
119 COG2890 HemK Methylase of poly 99.3 2.1E-11 4.5E-16 97.0 12.5 98 19-124 113-241 (280)
120 KOG1541|consensus 99.3 1.1E-11 2.4E-16 92.4 9.7 111 2-125 36-164 (270)
121 PRK04457 spermidine synthase; 99.3 1.7E-11 3.6E-16 96.8 10.9 105 15-124 65-180 (262)
122 PRK01544 bifunctional N5-gluta 99.3 2.1E-11 4.6E-16 104.5 12.0 102 16-123 138-271 (506)
123 PRK05134 bifunctional 3-demeth 99.3 3.7E-11 8E-16 93.4 12.4 101 14-123 46-153 (233)
124 PRK13255 thiopurine S-methyltr 99.3 4E-11 8.7E-16 92.0 11.6 101 14-120 35-154 (218)
125 TIGR01983 UbiG ubiquinone bios 99.3 3.6E-11 7.7E-16 92.9 11.0 100 16-123 45-151 (224)
126 PLN02589 caffeoyl-CoA O-methyl 99.3 2.3E-11 4.9E-16 94.7 9.8 110 6-120 70-189 (247)
127 PRK15128 23S rRNA m(5)C1962 me 99.3 2.5E-11 5.4E-16 100.8 10.6 106 14-124 218-342 (396)
128 KOG1271|consensus 99.3 6.4E-11 1.4E-15 85.9 10.8 104 17-125 68-185 (227)
129 PRK07580 Mg-protoporphyrin IX 99.3 1.4E-10 3E-15 89.9 12.9 78 15-102 62-139 (230)
130 PLN02366 spermidine synthase 99.3 1E-10 2.2E-15 94.0 12.3 108 15-124 90-209 (308)
131 PF02390 Methyltransf_4: Putat 99.3 6.4E-11 1.4E-15 89.4 10.4 103 17-125 18-137 (195)
132 TIGR02081 metW methionine bios 99.2 5E-11 1.1E-15 90.1 9.4 98 13-124 10-112 (194)
133 PRK11783 rlmL 23S rRNA m(2)G24 99.2 6E-11 1.3E-15 105.5 10.9 105 15-124 537-659 (702)
134 PRK01581 speE spermidine synth 99.2 1.1E-10 2.3E-15 94.8 11.0 109 15-124 149-271 (374)
135 TIGR00417 speE spermidine synt 99.2 1E-10 2.2E-15 92.9 10.6 107 16-124 72-189 (270)
136 KOG2915|consensus 99.2 3.2E-10 6.9E-15 87.3 12.6 108 3-116 94-204 (314)
137 TIGR02085 meth_trns_rumB 23S r 99.2 6.5E-11 1.4E-15 98.1 9.4 102 16-126 233-339 (374)
138 TIGR00479 rumA 23S rRNA (uraci 99.2 1.2E-10 2.6E-15 98.5 11.2 109 4-123 282-398 (431)
139 PF05219 DREV: DREV methyltran 99.2 3E-11 6.5E-16 92.9 6.6 92 16-124 94-191 (265)
140 PRK11933 yebU rRNA (cytosine-C 99.2 3.4E-10 7.3E-15 95.8 13.3 107 13-124 110-245 (470)
141 COG0220 Predicted S-adenosylme 99.2 2.4E-10 5.2E-15 87.7 11.2 103 18-126 50-169 (227)
142 cd02440 AdoMet_MTases S-adenos 99.2 2.7E-10 5.9E-15 76.2 10.3 95 19-120 1-103 (107)
143 PRK03612 spermidine synthase; 99.2 1.3E-10 2.7E-15 100.2 10.2 109 15-124 296-418 (521)
144 PHA03412 putative methyltransf 99.2 2.6E-10 5.7E-15 87.3 10.6 75 16-101 49-125 (241)
145 COG1041 Predicted DNA modifica 99.2 2.6E-10 5.7E-15 91.4 10.9 110 4-122 186-311 (347)
146 COG1092 Predicted SAM-dependen 99.2 1.7E-10 3.7E-15 94.9 9.9 104 16-125 217-340 (393)
147 PF03291 Pox_MCEL: mRNA cappin 99.2 1.8E-10 3.9E-15 93.4 9.4 108 16-125 62-190 (331)
148 PHA03411 putative methyltransf 99.1 9.7E-10 2.1E-14 86.1 12.3 94 15-120 63-182 (279)
149 PRK13256 thiopurine S-methyltr 99.1 6.9E-10 1.5E-14 85.1 11.2 105 15-122 42-164 (226)
150 COG2263 Predicted RNA methylas 99.1 9.9E-10 2.1E-14 80.5 10.8 76 15-101 44-119 (198)
151 PRK14896 ksgA 16S ribosomal RN 99.1 1.2E-09 2.7E-14 86.1 12.0 96 3-112 18-113 (258)
152 PRK00274 ksgA 16S ribosomal RN 99.1 5.9E-10 1.3E-14 88.6 10.2 96 3-111 31-126 (272)
153 KOG2904|consensus 99.1 1.8E-09 4E-14 83.3 12.3 102 16-122 148-286 (328)
154 PTZ00338 dimethyladenosine tra 99.1 9.1E-10 2E-14 88.1 10.7 98 3-111 25-122 (294)
155 PF01170 UPF0020: Putative RNA 99.1 1.9E-09 4.1E-14 80.3 11.7 102 14-119 26-149 (179)
156 KOG2899|consensus 99.1 4.9E-10 1.1E-14 84.9 8.4 114 9-125 51-213 (288)
157 PRK05031 tRNA (uracil-5-)-meth 99.1 1E-09 2.2E-14 90.5 10.5 101 17-125 207-324 (362)
158 TIGR02143 trmA_only tRNA (urac 99.1 1.1E-09 2.4E-14 90.0 10.4 105 18-130 199-320 (353)
159 TIGR00755 ksgA dimethyladenosi 99.1 2.5E-09 5.4E-14 84.2 11.7 99 3-115 18-120 (253)
160 PF05724 TPMT: Thiopurine S-me 99.1 7.1E-10 1.5E-14 85.0 8.2 104 14-120 35-154 (218)
161 TIGR00095 RNA methyltransferas 99.1 3.2E-09 6.9E-14 79.8 11.5 102 15-122 48-160 (189)
162 COG0144 Sun tRNA and rRNA cyto 99.1 5.9E-09 1.3E-13 85.7 14.1 108 13-125 153-292 (355)
163 PLN02672 methionine S-methyltr 99.1 1.8E-09 3.8E-14 98.7 11.9 108 17-125 119-282 (1082)
164 KOG3010|consensus 99.1 2.8E-10 6E-15 86.2 5.6 99 15-120 31-135 (261)
165 KOG1499|consensus 99.0 1E-09 2.3E-14 87.6 8.6 100 13-119 57-165 (346)
166 COG3963 Phospholipid N-methylt 99.0 2.3E-09 5E-14 76.8 9.4 111 3-125 37-160 (194)
167 KOG2361|consensus 99.0 1E-09 2.3E-14 83.1 7.4 102 19-126 74-188 (264)
168 PF06080 DUF938: Protein of un 99.0 3.1E-09 6.7E-14 79.6 9.7 110 5-120 13-140 (204)
169 COG4976 Predicted methyltransf 99.0 2E-10 4.3E-15 86.4 2.7 96 17-125 126-229 (287)
170 PF02475 Met_10: Met-10+ like- 99.0 4.5E-09 9.8E-14 79.3 10.0 100 13-118 98-199 (200)
171 PRK00536 speE spermidine synth 99.0 9.8E-09 2.1E-13 80.4 11.7 104 15-125 71-175 (262)
172 KOG3191|consensus 99.0 8.6E-09 1.9E-13 74.9 10.3 102 17-125 44-172 (209)
173 PF10672 Methyltrans_SAM: S-ad 99.0 1.6E-09 3.5E-14 85.9 7.0 106 15-125 122-242 (286)
174 KOG1975|consensus 99.0 2.3E-09 5.1E-14 84.5 7.7 110 14-125 115-241 (389)
175 PF10294 Methyltransf_16: Puta 99.0 9E-09 1.9E-13 76.3 10.4 106 13-122 42-157 (173)
176 PF00891 Methyltransf_2: O-met 99.0 1.3E-08 2.7E-13 79.6 11.5 92 14-121 98-199 (241)
177 COG2521 Predicted archaeal met 99.0 8.1E-10 1.7E-14 83.3 4.4 106 14-125 132-249 (287)
178 COG2265 TrmA SAM-dependent met 98.9 9.3E-09 2E-13 86.2 11.1 114 2-125 281-400 (432)
179 PF03602 Cons_hypoth95: Conser 98.9 1.8E-09 4E-14 80.6 5.7 114 5-124 31-156 (183)
180 PLN02823 spermine synthase 98.9 1.4E-08 3.1E-13 82.5 11.2 106 16-123 103-222 (336)
181 KOG0820|consensus 98.9 1.7E-08 3.6E-13 77.9 10.7 81 13-102 55-135 (315)
182 PRK04338 N(2),N(2)-dimethylgua 98.9 1.5E-08 3.3E-13 84.0 11.3 100 17-122 58-159 (382)
183 PRK11727 23S rRNA mA1618 methy 98.9 1.5E-08 3.2E-13 81.7 10.9 82 16-102 114-201 (321)
184 PF01269 Fibrillarin: Fibrilla 98.9 4.4E-08 9.5E-13 74.0 12.1 113 3-122 59-179 (229)
185 COG0030 KsgA Dimethyladenosine 98.9 2.4E-08 5.2E-13 77.7 11.0 99 3-113 19-118 (259)
186 PRK01544 bifunctional N5-gluta 98.9 2.1E-08 4.5E-13 86.2 11.1 104 16-125 347-466 (506)
187 COG0421 SpeE Spermidine syntha 98.9 2.5E-08 5.4E-13 79.0 10.5 106 18-125 78-194 (282)
188 KOG1663|consensus 98.9 3.7E-08 8E-13 74.5 10.7 102 15-120 72-182 (237)
189 PRK00050 16S rRNA m(4)C1402 me 98.9 8.4E-09 1.8E-13 82.2 7.7 90 2-100 7-100 (296)
190 COG0742 N6-adenine-specific me 98.8 5.5E-08 1.2E-12 71.9 10.9 113 6-124 33-157 (187)
191 PLN02232 ubiquinone biosynthes 98.8 1.8E-08 3.9E-13 73.8 8.0 78 45-124 1-84 (160)
192 COG2520 Predicted methyltransf 98.8 3.8E-08 8.3E-13 79.6 10.4 106 14-125 186-293 (341)
193 PF12147 Methyltransf_20: Puta 98.8 1.2E-07 2.6E-12 74.3 12.5 145 16-201 135-294 (311)
194 TIGR00478 tly hemolysin TlyA f 98.8 3.3E-08 7.1E-13 76.2 9.1 95 15-124 74-174 (228)
195 PF02527 GidB: rRNA small subu 98.8 9E-08 1.9E-12 71.4 11.2 103 14-123 45-150 (184)
196 PRK04148 hypothetical protein; 98.8 1.8E-07 3.9E-12 65.7 11.8 95 16-125 16-113 (134)
197 KOG3420|consensus 98.8 1.4E-08 3E-13 71.2 5.9 78 16-101 48-125 (185)
198 PF01564 Spermine_synth: Sperm 98.8 2.9E-08 6.2E-13 77.7 8.0 109 15-125 75-195 (246)
199 PF05185 PRMT5: PRMT5 arginine 98.8 3.1E-08 6.6E-13 83.6 8.6 97 17-118 187-294 (448)
200 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 3.3E-08 7.2E-13 78.9 7.8 106 14-124 83-222 (283)
201 PF05148 Methyltransf_8: Hypot 98.7 4.4E-08 9.4E-13 73.3 7.6 94 4-122 61-159 (219)
202 KOG1500|consensus 98.7 9.1E-08 2E-12 76.1 9.0 98 16-121 177-282 (517)
203 COG4262 Predicted spermidine s 98.7 2.6E-07 5.7E-12 74.3 11.1 111 15-126 288-412 (508)
204 PF05958 tRNA_U5-meth_tr: tRNA 98.7 6.8E-08 1.5E-12 79.5 8.1 113 2-125 185-314 (352)
205 PF05891 Methyltransf_PK: AdoM 98.6 5.7E-08 1.2E-12 73.3 5.6 98 17-121 56-161 (218)
206 PF02384 N6_Mtase: N-6 DNA Met 98.6 1.9E-07 4.2E-12 75.7 9.1 117 3-124 35-186 (311)
207 PF09445 Methyltransf_15: RNA 98.6 5.2E-08 1.1E-12 70.8 5.1 77 18-101 1-80 (163)
208 TIGR00308 TRM1 tRNA(guanine-26 98.6 2.9E-07 6.3E-12 76.1 9.7 99 18-121 46-147 (374)
209 PRK10611 chemotaxis methyltran 98.6 3.5E-07 7.7E-12 72.8 9.6 104 17-120 116-261 (287)
210 COG1889 NOP1 Fibrillarin-like 98.6 7.3E-07 1.6E-11 66.2 10.4 113 2-122 61-181 (231)
211 PF01739 CheR: CheR methyltran 98.6 3E-07 6.4E-12 69.3 8.3 105 16-120 31-174 (196)
212 COG0116 Predicted N6-adenine-s 98.6 1.1E-06 2.5E-11 71.7 12.1 107 14-124 189-347 (381)
213 COG1352 CheR Methylase of chem 98.6 1.4E-06 3E-11 68.6 12.1 104 17-120 97-240 (268)
214 KOG2187|consensus 98.6 2.6E-07 5.6E-12 77.4 7.7 111 5-125 374-494 (534)
215 COG0357 GidB Predicted S-adeno 98.5 8.7E-07 1.9E-11 67.4 9.8 98 17-120 68-167 (215)
216 KOG1122|consensus 98.5 9.6E-07 2.1E-11 72.3 10.6 106 14-124 239-374 (460)
217 KOG3987|consensus 98.5 1.1E-08 2.4E-13 75.9 -1.3 93 16-125 112-211 (288)
218 PRK11783 rlmL 23S rRNA m(2)G24 98.5 3.9E-06 8.5E-11 75.2 13.7 107 15-125 189-351 (702)
219 PF00398 RrnaAD: Ribosomal RNA 98.5 1.4E-06 3E-11 69.0 9.8 89 2-102 18-109 (262)
220 PF04816 DUF633: Family of unk 98.5 1E-06 2.2E-11 66.9 8.4 99 20-123 1-103 (205)
221 KOG3045|consensus 98.5 8.9E-07 1.9E-11 68.1 7.8 92 3-121 168-264 (325)
222 TIGR02987 met_A_Alw26 type II 98.5 2.9E-06 6.2E-11 73.7 12.0 80 16-100 31-122 (524)
223 COG0293 FtsJ 23S rRNA methylas 98.4 1.4E-06 2.9E-11 65.5 8.4 97 13-125 42-163 (205)
224 PF03059 NAS: Nicotianamine sy 98.4 2.6E-06 5.5E-11 67.3 9.6 100 18-121 122-230 (276)
225 PF08123 DOT1: Histone methyla 98.4 3.2E-06 7E-11 64.2 9.6 111 3-119 31-156 (205)
226 PF03141 Methyltransf_29: Puta 98.4 7.3E-07 1.6E-11 74.7 5.8 94 19-125 120-223 (506)
227 KOG2940|consensus 98.3 7.2E-07 1.6E-11 67.5 4.8 102 16-126 72-179 (325)
228 COG2384 Predicted SAM-dependen 98.3 6.1E-06 1.3E-10 62.3 9.7 108 8-120 8-119 (226)
229 COG4076 Predicted RNA methylas 98.3 1.2E-06 2.6E-11 64.3 4.9 93 17-119 33-133 (252)
230 TIGR03439 methyl_EasF probable 98.3 1.4E-05 3E-10 64.7 11.6 109 10-124 70-200 (319)
231 COG0275 Predicted S-adenosylme 98.3 1.7E-05 3.8E-10 62.6 11.5 90 2-99 11-105 (314)
232 TIGR00006 S-adenosyl-methyltra 98.3 1E-05 2.2E-10 64.9 9.8 90 2-100 8-102 (305)
233 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.2 2.9E-06 6.2E-11 66.4 5.6 104 15-121 55-199 (256)
234 PRK10742 putative methyltransf 98.2 1E-05 2.3E-10 62.6 8.6 92 6-102 78-176 (250)
235 KOG1596|consensus 98.2 1E-05 2.2E-10 61.8 7.8 107 12-125 152-265 (317)
236 KOG4589|consensus 98.1 1E-05 2.2E-10 59.5 6.9 97 13-125 66-188 (232)
237 PRK11760 putative 23S rRNA C24 98.1 1.4E-05 3E-10 64.6 8.3 86 14-114 209-296 (357)
238 PF05971 Methyltransf_10: Prot 98.1 4.3E-05 9.4E-10 61.0 10.9 85 17-107 103-194 (299)
239 PF01728 FtsJ: FtsJ-like methy 98.1 9.1E-07 2E-11 66.1 1.2 92 17-124 24-142 (181)
240 PF13679 Methyltransf_32: Meth 98.1 6.9E-05 1.5E-09 53.6 10.8 79 15-96 24-105 (141)
241 KOG2198|consensus 98.1 3.4E-05 7.3E-10 62.6 9.7 115 6-125 145-300 (375)
242 KOG1331|consensus 98.1 4.8E-06 1E-10 65.1 4.5 96 13-124 42-146 (293)
243 TIGR01444 fkbM_fam methyltrans 98.0 2.6E-05 5.7E-10 55.7 7.6 58 19-82 1-58 (143)
244 COG3897 Predicted methyltransf 98.0 2.3E-05 5E-10 58.1 7.2 99 14-124 77-182 (218)
245 COG1064 AdhP Zn-dependent alco 98.0 5.5E-05 1.2E-09 61.4 9.6 97 13-123 163-261 (339)
246 COG0500 SmtA SAM-dependent met 98.0 0.00014 3.1E-09 51.9 11.0 99 20-125 52-159 (257)
247 PF09243 Rsm22: Mitochondrial 98.0 7.8E-05 1.7E-09 59.4 9.6 48 16-63 33-80 (274)
248 KOG3178|consensus 98.0 6.8E-05 1.5E-09 60.5 9.2 90 18-122 179-276 (342)
249 PF13578 Methyltransf_24: Meth 98.0 1.6E-06 3.5E-11 58.9 -0.2 95 21-120 1-104 (106)
250 KOG1269|consensus 97.9 3.9E-05 8.5E-10 63.1 7.3 106 11-122 105-216 (364)
251 COG1189 Predicted rRNA methyla 97.9 0.00014 3.1E-09 55.7 9.6 99 15-125 78-182 (245)
252 COG1063 Tdh Threonine dehydrog 97.9 0.00016 3.4E-09 59.8 10.7 100 15-123 167-271 (350)
253 PF07942 N2227: N2227-like pro 97.9 0.00018 3.9E-09 56.7 10.3 99 17-118 57-199 (270)
254 PF01861 DUF43: Protein of unk 97.8 0.0014 3E-08 50.6 13.8 102 16-125 44-153 (243)
255 KOG1709|consensus 97.8 0.00023 5E-09 53.6 9.1 98 15-120 100-205 (271)
256 KOG0024|consensus 97.8 0.00012 2.6E-09 58.4 7.9 102 13-124 166-276 (354)
257 PF07091 FmrO: Ribosomal RNA m 97.7 0.00035 7.6E-09 54.1 9.0 91 4-102 93-183 (251)
258 COG4798 Predicted methyltransf 97.7 0.00025 5.4E-09 52.6 7.6 39 13-51 45-83 (238)
259 KOG2730|consensus 97.6 7.2E-05 1.6E-09 56.5 3.6 78 16-100 94-175 (263)
260 PRK09880 L-idonate 5-dehydroge 97.5 0.00033 7.3E-09 57.5 7.5 98 14-121 167-266 (343)
261 PF01795 Methyltransf_5: MraW 97.5 0.00017 3.7E-09 57.9 5.5 90 2-100 8-103 (310)
262 KOG3115|consensus 97.5 0.00049 1.1E-08 51.4 7.0 104 18-122 62-184 (249)
263 KOG2671|consensus 97.5 0.0003 6.4E-09 56.6 5.9 82 13-100 205-294 (421)
264 PF11968 DUF3321: Putative met 97.5 0.0002 4.4E-09 54.2 4.7 84 18-125 53-153 (219)
265 PF06962 rRNA_methylase: Putat 97.4 0.00044 9.6E-09 49.0 6.0 78 43-124 1-95 (140)
266 PF04445 SAM_MT: Putative SAM- 97.4 0.00069 1.5E-08 52.2 7.3 92 6-102 65-163 (234)
267 PRK09424 pntA NAD(P) transhydr 97.4 0.0027 5.7E-08 54.8 11.5 94 15-122 163-286 (509)
268 COG0286 HsdM Type I restrictio 97.4 0.003 6.5E-08 54.5 11.7 117 3-125 175-330 (489)
269 PRK11524 putative methyltransf 97.3 0.00098 2.1E-08 53.4 7.3 56 2-63 197-252 (284)
270 PF04672 Methyltransf_19: S-ad 97.3 0.0033 7.2E-08 49.4 9.6 103 18-125 70-194 (267)
271 cd08230 glucose_DH Glucose deh 97.3 0.0021 4.5E-08 53.1 9.1 95 14-120 170-268 (355)
272 cd08237 ribitol-5-phosphate_DH 97.3 0.0026 5.6E-08 52.3 9.4 91 14-120 161-255 (341)
273 PF02005 TRM: N2,N2-dimethylgu 97.2 0.0015 3.2E-08 54.3 7.0 104 16-122 49-155 (377)
274 KOG2352|consensus 97.1 0.0036 7.8E-08 52.9 8.9 102 13-122 44-162 (482)
275 KOG3201|consensus 97.1 0.00029 6.3E-09 50.7 1.7 107 15-124 28-143 (201)
276 KOG1501|consensus 97.0 0.0027 5.8E-08 52.9 7.3 57 19-81 69-125 (636)
277 TIGR02822 adh_fam_2 zinc-bindi 97.0 0.01 2.2E-07 48.6 10.8 92 13-121 162-254 (329)
278 PRK13699 putative methylase; P 97.0 0.0034 7.5E-08 48.6 7.5 47 14-63 161-207 (227)
279 KOG1562|consensus 96.9 0.0054 1.2E-07 48.6 7.2 105 15-121 120-236 (337)
280 TIGR03451 mycoS_dep_FDH mycoth 96.9 0.012 2.7E-07 48.6 9.9 97 13-121 173-276 (358)
281 TIGR01202 bchC 2-desacetyl-2-h 96.9 0.0068 1.5E-07 49.1 8.2 88 15-121 143-231 (308)
282 PHA01634 hypothetical protein 96.8 0.012 2.6E-07 40.8 7.8 46 16-63 28-73 (156)
283 cd08283 FDH_like_1 Glutathione 96.8 0.021 4.5E-07 47.8 10.7 97 13-121 181-306 (386)
284 KOG4058|consensus 96.7 0.017 3.7E-07 41.2 8.3 108 5-122 63-173 (199)
285 cd08254 hydroxyacyl_CoA_DH 6-h 96.7 0.033 7.1E-07 45.2 11.2 95 13-121 162-263 (338)
286 TIGR03366 HpnZ_proposed putati 96.7 0.014 2.9E-07 46.6 8.7 96 14-121 118-218 (280)
287 cd00401 AdoHcyase S-adenosyl-L 96.6 0.014 3E-07 49.2 8.7 88 15-121 200-289 (413)
288 COG5459 Predicted rRNA methyla 96.6 0.0038 8.2E-08 50.7 5.0 103 17-124 114-228 (484)
289 PF04989 CmcI: Cephalosporin h 96.6 0.017 3.8E-07 43.7 8.3 101 17-123 33-149 (206)
290 KOG2793|consensus 96.6 0.023 5.1E-07 44.3 9.2 102 17-121 87-199 (248)
291 cd08281 liver_ADH_like1 Zinc-d 96.6 0.0047 1E-07 51.3 5.7 96 13-121 188-290 (371)
292 PF11599 AviRa: RRNA methyltra 96.6 0.012 2.6E-07 44.6 6.9 104 17-120 52-213 (246)
293 PF00107 ADH_zinc_N: Zinc-bind 96.5 0.0097 2.1E-07 41.5 6.2 86 26-124 1-92 (130)
294 cd08239 THR_DH_like L-threonin 96.5 0.029 6.2E-07 45.9 9.8 96 13-121 160-262 (339)
295 TIGR03201 dearomat_had 6-hydro 96.4 0.037 8.1E-07 45.5 10.0 98 13-121 163-272 (349)
296 COG3129 Predicted SAM-dependen 96.4 0.019 4.2E-07 44.0 7.3 88 16-108 78-171 (292)
297 TIGR00561 pntA NAD(P) transhyd 96.4 0.028 6E-07 48.6 9.2 96 15-124 162-287 (511)
298 PLN02740 Alcohol dehydrogenase 96.3 0.04 8.8E-07 46.0 9.7 97 13-121 195-300 (381)
299 KOG0023|consensus 96.3 0.011 2.3E-07 47.6 5.5 96 13-122 178-280 (360)
300 PRK10309 galactitol-1-phosphat 96.2 0.014 3.1E-07 47.9 6.5 95 13-120 157-259 (347)
301 COG1062 AdhC Zn-dependent alco 96.2 0.055 1.2E-06 44.0 9.1 99 13-123 182-287 (366)
302 cd08238 sorbose_phosphate_red 96.1 0.066 1.4E-06 45.2 10.1 106 13-120 172-287 (410)
303 KOG1253|consensus 96.1 0.0089 1.9E-07 50.6 4.5 106 14-123 107-218 (525)
304 COG1867 TRM1 N2,N2-dimethylgua 96.1 0.048 1E-06 44.7 8.5 102 17-124 53-157 (380)
305 cd05188 MDR Medium chain reduc 96.1 0.075 1.6E-06 41.4 9.6 96 14-122 132-233 (271)
306 PLN02586 probable cinnamyl alc 96.0 0.031 6.6E-07 46.3 7.3 95 14-120 181-277 (360)
307 TIGR02818 adh_III_F_hyde S-(hy 96.0 0.075 1.6E-06 44.1 9.6 98 13-121 182-287 (368)
308 PLN02827 Alcohol dehydrogenase 95.9 0.067 1.4E-06 44.7 9.2 96 13-120 190-294 (378)
309 cd08255 2-desacetyl-2-hydroxye 95.9 0.083 1.8E-06 41.7 9.4 95 13-121 94-190 (277)
310 COG1565 Uncharacterized conser 95.8 0.051 1.1E-06 44.5 7.7 60 4-63 64-131 (370)
311 cd08296 CAD_like Cinnamyl alco 95.8 0.025 5.4E-07 46.1 6.1 96 13-121 160-259 (333)
312 COG4627 Uncharacterized protei 95.7 0.0038 8.1E-08 44.8 0.8 42 84-125 41-90 (185)
313 TIGR02819 fdhA_non_GSH formald 95.7 0.21 4.6E-06 42.0 11.3 97 13-121 182-299 (393)
314 cd08285 NADP_ADH NADP(H)-depen 95.7 0.17 3.6E-06 41.6 10.5 96 13-120 163-265 (351)
315 PLN03154 putative allyl alcoho 95.7 0.11 2.3E-06 42.9 9.3 97 13-120 155-257 (348)
316 cd08242 MDR_like Medium chain 95.7 0.1 2.3E-06 42.1 9.1 91 13-119 152-243 (319)
317 KOG0822|consensus 95.7 0.059 1.3E-06 46.2 7.6 96 19-120 370-477 (649)
318 cd08277 liver_alcohol_DH_like 95.6 0.04 8.7E-07 45.7 6.4 98 13-121 181-286 (365)
319 PLN02514 cinnamyl-alcohol dehy 95.5 0.081 1.7E-06 43.8 8.1 96 14-120 178-274 (357)
320 KOG2798|consensus 95.5 0.11 2.3E-06 41.9 8.2 49 4-55 132-186 (369)
321 cd05285 sorbitol_DH Sorbitol d 95.5 0.2 4.3E-06 41.0 10.3 98 13-121 159-265 (343)
322 cd08234 threonine_DH_like L-th 95.4 0.19 4.2E-06 40.8 9.9 96 13-121 156-257 (334)
323 TIGR02825 B4_12hDH leukotriene 95.4 0.19 4.2E-06 40.7 9.8 94 13-120 135-236 (325)
324 PF07757 AdoMet_MTase: Predict 95.4 0.026 5.6E-07 38.0 3.7 32 16-50 58-89 (112)
325 cd08300 alcohol_DH_class_III c 95.4 0.23 4.9E-06 41.2 10.3 95 13-120 183-287 (368)
326 PLN02178 cinnamyl-alcohol dehy 95.3 0.087 1.9E-06 44.0 7.7 93 15-120 177-272 (375)
327 cd08232 idonate-5-DH L-idonate 95.3 0.068 1.5E-06 43.6 6.9 92 16-120 165-261 (339)
328 KOG2651|consensus 95.3 0.064 1.4E-06 44.2 6.3 43 15-59 152-194 (476)
329 PF02636 Methyltransf_28: Puta 95.3 0.039 8.5E-07 43.4 5.1 62 2-63 2-72 (252)
330 cd08245 CAD Cinnamyl alcohol d 95.2 0.12 2.6E-06 42.0 8.1 96 13-121 159-256 (330)
331 cd08301 alcohol_DH_plants Plan 95.2 0.2 4.3E-06 41.5 9.4 97 13-121 184-289 (369)
332 cd00315 Cyt_C5_DNA_methylase C 95.1 0.09 1.9E-06 42.0 6.8 69 19-100 2-72 (275)
333 cd08298 CAD2 Cinnamyl alcohol 95.1 0.37 7.9E-06 39.1 10.6 91 13-120 164-255 (329)
334 cd08231 MDR_TM0436_like Hypoth 95.1 0.34 7.4E-06 39.9 10.6 95 14-121 175-280 (361)
335 cd08233 butanediol_DH_like (2R 95.1 0.078 1.7E-06 43.6 6.7 97 13-120 169-271 (351)
336 KOG1227|consensus 95.1 0.027 5.8E-07 44.9 3.6 98 15-119 193-295 (351)
337 cd05278 FDH_like Formaldehyde 94.8 0.43 9.3E-06 38.9 10.3 96 13-120 164-266 (347)
338 TIGR00936 ahcY adenosylhomocys 94.8 0.19 4.1E-06 42.4 8.1 88 15-121 193-282 (406)
339 KOG0022|consensus 94.8 0.25 5.5E-06 39.9 8.3 96 13-120 189-293 (375)
340 cd08261 Zn_ADH7 Alcohol dehydr 94.8 0.07 1.5E-06 43.5 5.5 97 13-120 156-257 (337)
341 COG1255 Uncharacterized protei 94.8 0.39 8.4E-06 32.8 8.0 91 15-125 13-106 (129)
342 cd08278 benzyl_alcohol_DH Benz 94.7 0.44 9.6E-06 39.5 10.2 96 13-121 183-285 (365)
343 PF10237 N6-adenineMlase: Prob 94.6 0.44 9.4E-06 34.9 8.7 104 4-124 13-126 (162)
344 cd08294 leukotriene_B4_DH_like 94.6 0.099 2.1E-06 42.3 6.0 94 13-120 140-240 (329)
345 PRK08306 dipicolinate synthase 94.6 0.33 7.1E-06 39.2 8.9 94 16-125 151-245 (296)
346 PRK05476 S-adenosyl-L-homocyst 94.6 0.21 4.5E-06 42.4 7.9 88 15-121 210-299 (425)
347 PF03141 Methyltransf_29: Puta 94.6 0.031 6.7E-07 47.6 2.9 87 18-121 367-467 (506)
348 COG0604 Qor NADPH:quinone redu 94.5 0.11 2.3E-06 42.6 5.9 100 13-123 139-243 (326)
349 cd08286 FDH_like_ADH2 formalde 94.4 0.19 4.2E-06 41.1 7.3 98 13-120 163-265 (345)
350 TIGR00692 tdh L-threonine 3-de 94.4 1.1 2.5E-05 36.5 11.8 97 14-121 159-261 (340)
351 cd08293 PTGR2 Prostaglandin re 94.4 0.13 2.9E-06 42.0 6.3 95 14-120 150-253 (345)
352 cd08295 double_bond_reductase_ 94.3 0.47 1E-05 38.8 9.3 96 13-120 148-250 (338)
353 TIGR00497 hsdM type I restrict 94.3 1.1 2.4E-05 39.1 11.9 106 16-124 217-358 (501)
354 cd05283 CAD1 Cinnamyl alcohol 94.2 0.64 1.4E-05 37.9 9.9 95 14-121 167-263 (337)
355 PF03686 UPF0146: Uncharacteri 94.0 0.28 6.1E-06 34.1 6.2 91 16-125 13-106 (127)
356 KOG2352|consensus 94.0 0.12 2.7E-06 43.9 5.3 105 15-125 294-420 (482)
357 cd08263 Zn_ADH10 Alcohol dehyd 93.9 1 2.2E-05 37.3 10.7 95 14-121 185-287 (367)
358 PF10354 DUF2431: Domain of un 93.9 0.65 1.4E-05 34.1 8.4 99 22-125 2-129 (166)
359 PF05711 TylF: Macrocin-O-meth 93.8 0.27 5.8E-06 38.6 6.6 105 17-124 75-215 (248)
360 COG4301 Uncharacterized conser 93.8 2.6 5.6E-05 33.1 11.7 108 15-126 77-198 (321)
361 cd08240 6_hydroxyhexanoate_dh_ 93.8 1.4 2.9E-05 36.2 11.2 95 14-120 173-273 (350)
362 cd05279 Zn_ADH1 Liver alcohol 93.8 0.67 1.4E-05 38.4 9.4 99 13-121 180-285 (365)
363 PRK10083 putative oxidoreducta 93.8 0.27 5.8E-06 40.1 6.9 99 13-121 157-259 (339)
364 COG1568 Predicted methyltransf 93.7 0.49 1.1E-05 37.6 7.8 102 16-124 152-263 (354)
365 cd05281 TDH Threonine dehydrog 93.7 1 2.2E-05 36.8 10.2 97 14-121 161-262 (341)
366 cd08236 sugar_DH NAD(P)-depend 93.7 0.81 1.8E-05 37.3 9.7 96 13-121 156-258 (343)
367 KOG1098|consensus 93.7 0.071 1.5E-06 46.6 3.4 39 13-51 41-79 (780)
368 TIGR00518 alaDH alanine dehydr 93.7 0.19 4.1E-06 41.9 5.9 98 16-124 166-270 (370)
369 PTZ00357 methyltransferase; Pr 93.6 0.6 1.3E-05 41.8 8.9 98 19-116 703-830 (1072)
370 PLN02494 adenosylhomocysteinas 93.6 0.36 7.8E-06 41.4 7.4 89 15-122 252-342 (477)
371 PF07279 DUF1442: Protein of u 93.5 1.9 4.1E-05 33.0 10.4 110 5-120 31-147 (218)
372 cd05284 arabinose_DH_like D-ar 93.5 1.3 2.9E-05 36.0 10.7 95 14-120 165-265 (340)
373 PLN02702 L-idonate 5-dehydroge 93.5 1.4 3E-05 36.5 10.8 98 13-120 178-284 (364)
374 PRK01747 mnmC bifunctional tRN 93.1 0.64 1.4E-05 41.9 8.8 105 17-121 58-206 (662)
375 COG0686 Ald Alanine dehydrogen 93.1 0.94 2E-05 36.7 8.5 99 17-126 168-273 (371)
376 PRK11524 putative methyltransf 93.0 0.14 3E-06 41.1 4.0 52 72-123 7-82 (284)
377 cd08265 Zn_ADH3 Alcohol dehydr 92.9 1 2.2E-05 37.7 9.2 97 13-120 200-306 (384)
378 KOG2078|consensus 92.9 0.081 1.8E-06 44.2 2.5 64 13-82 246-309 (495)
379 PRK09422 ethanol-active dehydr 92.8 1.3 2.7E-05 36.1 9.5 97 13-121 159-261 (338)
380 cd08284 FDH_like_2 Glutathione 92.8 2 4.3E-05 35.0 10.6 96 13-121 164-266 (344)
381 cd08279 Zn_ADH_class_III Class 92.8 1.7 3.6E-05 35.9 10.2 96 13-121 179-282 (363)
382 KOG1099|consensus 92.7 0.089 1.9E-06 40.4 2.3 91 18-124 43-166 (294)
383 PTZ00075 Adenosylhomocysteinas 92.6 0.53 1.2E-05 40.4 7.1 90 15-123 252-343 (476)
384 PRK05396 tdh L-threonine 3-deh 92.6 2.8 6E-05 34.2 11.3 97 14-122 161-264 (341)
385 PF02254 TrkA_N: TrkA-N domain 92.5 0.88 1.9E-05 30.8 7.1 88 25-124 4-99 (116)
386 PF06859 Bin3: Bicoid-interact 92.5 0.052 1.1E-06 36.7 0.8 35 90-124 1-47 (110)
387 KOG2360|consensus 92.4 0.48 1E-05 39.3 6.3 81 14-99 211-293 (413)
388 cd08235 iditol_2_DH_like L-idi 92.4 1.7 3.8E-05 35.3 9.9 96 13-121 162-265 (343)
389 PF03269 DUF268: Caenorhabditi 92.4 0.071 1.5E-06 38.6 1.4 95 17-125 2-115 (177)
390 cd08262 Zn_ADH8 Alcohol dehydr 92.4 2.2 4.8E-05 34.7 10.4 97 13-121 158-264 (341)
391 PRK05562 precorrin-2 dehydroge 92.1 1.4 3E-05 34.1 8.1 93 16-124 24-119 (223)
392 KOG1197|consensus 92.0 1.4 3E-05 34.8 8.0 97 13-120 143-244 (336)
393 KOG1198|consensus 92.0 0.27 5.9E-06 40.6 4.5 102 13-124 154-259 (347)
394 PF11312 DUF3115: Protein of u 92.0 0.54 1.2E-05 38.0 6.0 107 18-124 88-245 (315)
395 TIGR01470 cysG_Nterm siroheme 91.8 1 2.2E-05 34.3 7.2 96 16-125 8-104 (205)
396 PRK05786 fabG 3-ketoacyl-(acyl 91.7 3.4 7.5E-05 31.6 10.4 76 16-99 4-90 (238)
397 cd08269 Zn_ADH9 Alcohol dehydr 91.5 3.5 7.5E-05 32.9 10.5 96 13-121 126-229 (312)
398 cd08256 Zn_ADH2 Alcohol dehydr 91.4 3.5 7.6E-05 33.8 10.6 96 13-120 171-273 (350)
399 cd08287 FDH_like_ADH3 formalde 91.4 2.9 6.2E-05 34.1 10.0 96 13-120 165-267 (345)
400 COG2933 Predicted SAM-dependen 91.3 0.73 1.6E-05 36.4 5.9 73 13-100 208-280 (358)
401 cd05289 MDR_like_2 alcohol deh 91.2 1.4 2.9E-05 35.0 7.9 93 14-121 142-238 (309)
402 cd08274 MDR9 Medium chain dehy 91.2 3.4 7.3E-05 33.7 10.3 93 13-120 174-272 (350)
403 cd08246 crotonyl_coA_red croto 91.2 4.1 8.8E-05 34.1 10.9 102 13-120 190-314 (393)
404 cd08260 Zn_ADH6 Alcohol dehydr 91.2 3 6.5E-05 34.0 9.9 95 13-121 162-264 (345)
405 PRK06940 short chain dehydroge 91.1 3.5 7.5E-05 32.7 10.0 75 18-100 3-86 (275)
406 PF02826 2-Hacid_dh_C: D-isome 91.0 0.75 1.6E-05 34.1 5.7 87 16-121 35-127 (178)
407 PRK13771 putative alcohol dehy 91.0 1.3 2.7E-05 36.0 7.6 95 13-121 159-255 (334)
408 PF05050 Methyltransf_21: Meth 91.0 0.67 1.4E-05 33.3 5.4 39 22-60 1-42 (167)
409 COG1748 LYS9 Saccharopine dehy 90.9 0.85 1.8E-05 38.2 6.4 75 18-102 2-80 (389)
410 PF05206 TRM13: Methyltransfer 90.8 1.7 3.8E-05 34.4 7.7 41 14-54 16-60 (259)
411 KOG3924|consensus 90.8 1.2 2.7E-05 37.0 7.0 111 4-120 182-307 (419)
412 cd08297 CAD3 Cinnamyl alcohol 90.4 5.2 0.00011 32.5 10.6 96 13-121 162-265 (341)
413 PF01408 GFO_IDH_MocA: Oxidore 90.3 1.2 2.5E-05 30.3 5.8 89 19-120 2-92 (120)
414 cd08291 ETR_like_1 2-enoyl thi 90.1 0.95 2E-05 36.7 6.0 92 16-121 142-242 (324)
415 cd05286 QOR2 Quinone oxidoredu 90.1 0.68 1.5E-05 36.8 5.2 95 13-121 133-235 (320)
416 cd08299 alcohol_DH_class_I_II_ 89.9 4.1 9E-05 33.9 9.8 97 13-121 187-292 (373)
417 cd08243 quinone_oxidoreductase 89.6 2.6 5.7E-05 33.6 8.2 95 14-120 140-237 (320)
418 KOG2920|consensus 89.4 0.52 1.1E-05 37.4 3.8 38 15-54 115-152 (282)
419 COG0863 DNA modification methy 89.2 2.1 4.5E-05 34.3 7.3 48 13-63 219-266 (302)
420 cd08241 QOR1 Quinone oxidoredu 89.2 1.8 3.9E-05 34.5 7.0 94 13-120 136-237 (323)
421 cd08282 PFDH_like Pseudomonas 89.1 7.3 0.00016 32.3 10.7 97 13-120 173-284 (375)
422 cd05213 NAD_bind_Glutamyl_tRNA 89.1 4.3 9.2E-05 33.0 9.0 95 16-125 177-276 (311)
423 PRK13699 putative methylase; P 88.8 0.55 1.2E-05 36.4 3.6 47 75-121 3-72 (227)
424 TIGR02853 spore_dpaA dipicolin 88.7 2.4 5.3E-05 34.1 7.2 92 16-124 150-243 (287)
425 PTZ00354 alcohol dehydrogenase 88.5 6.1 0.00013 31.8 9.7 95 13-120 137-239 (334)
426 TIGR02356 adenyl_thiF thiazole 88.3 5.7 0.00012 30.1 8.7 34 16-50 20-54 (202)
427 cd08289 MDR_yhfp_like Yhfp put 88.2 5.8 0.00013 31.9 9.4 92 16-121 146-243 (326)
428 cd08292 ETR_like_2 2-enoyl thi 88.2 6.6 0.00014 31.5 9.7 94 13-120 136-237 (324)
429 PRK08324 short chain dehydroge 88.1 3.4 7.4E-05 37.5 8.6 76 16-99 421-507 (681)
430 KOG2539|consensus 87.9 2.8 6.1E-05 35.8 7.2 104 17-124 201-318 (491)
431 PRK08618 ornithine cyclodeamin 87.7 8.1 0.00018 31.6 9.9 93 15-119 125-219 (325)
432 cd05288 PGDH Prostaglandin deh 87.6 1.8 4E-05 34.9 6.1 93 14-120 143-243 (329)
433 cd08276 MDR7 Medium chain dehy 87.5 7.5 0.00016 31.2 9.7 95 13-121 157-259 (336)
434 cd08248 RTN4I1 Human Reticulon 87.5 1.8 3.8E-05 35.4 6.0 91 16-121 162-257 (350)
435 TIGR02823 oxido_YhdH putative 87.5 1.8 4E-05 34.8 6.0 93 14-120 142-240 (323)
436 TIGR01751 crot-CoA-red crotony 87.4 7.8 0.00017 32.5 9.9 96 13-122 186-311 (398)
437 COG4017 Uncharacterized protei 87.3 3.4 7.5E-05 31.1 6.6 85 14-118 42-127 (254)
438 cd08252 AL_MDR Arginate lyase 87.1 11 0.00023 30.5 10.4 93 17-121 150-248 (336)
439 cd08244 MDR_enoyl_red Possible 87.1 10 0.00023 30.3 10.3 96 13-122 139-242 (324)
440 KOG2912|consensus 86.9 1.9 4.2E-05 35.0 5.5 74 21-100 107-188 (419)
441 PRK07806 short chain dehydroge 86.7 12 0.00027 28.6 10.7 98 16-120 5-133 (248)
442 COG0287 TyrA Prephenate dehydr 86.7 4.2 9.2E-05 32.6 7.5 87 18-117 4-94 (279)
443 PRK07502 cyclohexadienyl dehyd 86.6 4.6 0.0001 32.7 7.9 89 17-119 6-98 (307)
444 cd08267 MDR1 Medium chain dehy 86.5 4.8 0.0001 32.1 7.9 95 14-122 141-241 (319)
445 PRK03562 glutathione-regulated 86.5 6.9 0.00015 35.2 9.5 94 18-125 401-502 (621)
446 smart00829 PKS_ER Enoylreducta 86.4 4 8.7E-05 31.8 7.4 99 13-121 101-205 (288)
447 cd08270 MDR4 Medium chain dehy 86.3 9 0.0002 30.4 9.4 89 16-121 132-222 (305)
448 PF12242 Eno-Rase_NADH_b: NAD( 86.1 3.7 8E-05 25.9 5.3 34 17-50 39-73 (78)
449 cd08258 Zn_ADH4 Alcohol dehydr 86.0 2.5 5.4E-05 34.0 6.0 97 13-120 161-263 (306)
450 PRK03369 murD UDP-N-acetylmura 86.0 3.3 7.2E-05 35.9 7.1 74 13-102 8-82 (488)
451 PRK10669 putative cation:proto 85.9 5.1 0.00011 35.4 8.3 93 18-124 418-518 (558)
452 PRK03659 glutathione-regulated 85.9 4.4 9.6E-05 36.2 8.0 95 18-126 401-503 (601)
453 cd05195 enoyl_red enoyl reduct 85.8 4.8 0.0001 31.3 7.5 97 13-121 105-209 (293)
454 PF03492 Methyltransf_7: SAM d 85.8 10 0.00022 31.2 9.5 86 17-102 17-119 (334)
455 PRK06141 ornithine cyclodeamin 85.3 9.3 0.0002 31.1 9.0 94 15-120 123-218 (314)
456 PRK08217 fabG 3-ketoacyl-(acyl 85.2 7.1 0.00015 30.0 8.1 77 16-99 4-91 (253)
457 cd05564 PTS_IIB_chitobiose_lic 85.1 2.4 5.3E-05 28.0 4.6 73 23-120 4-76 (96)
458 cd05280 MDR_yhdh_yhfp Yhdh and 85.0 7.3 0.00016 31.2 8.4 92 17-121 147-243 (325)
459 cd08273 MDR8 Medium chain dehy 85.0 11 0.00023 30.4 9.3 96 13-121 136-233 (331)
460 PRK10754 quinone oxidoreductas 84.9 12 0.00026 30.1 9.6 95 13-121 137-239 (327)
461 cd08250 Mgc45594_like Mgc45594 84.7 12 0.00026 30.1 9.5 94 13-120 136-236 (329)
462 PRK05808 3-hydroxybutyryl-CoA 84.6 2.4 5.3E-05 33.8 5.3 98 18-123 4-120 (282)
463 PRK05708 2-dehydropantoate 2-r 84.3 14 0.00031 29.8 9.7 101 18-125 3-108 (305)
464 PRK07340 ornithine cyclodeamin 84.3 14 0.0003 30.0 9.5 92 15-120 123-216 (304)
465 PRK09260 3-hydroxybutyryl-CoA 84.2 6.4 0.00014 31.5 7.6 99 18-123 2-119 (288)
466 TIGR00675 dcm DNA-methyltransf 84.1 2.3 5E-05 34.7 5.0 66 20-99 1-68 (315)
467 PF02086 MethyltransfD12: D12 84.1 2.9 6.2E-05 32.7 5.4 54 2-60 8-61 (260)
468 PRK10637 cysG siroheme synthas 84.1 11 0.00023 32.6 9.2 94 16-125 11-107 (457)
469 PF11899 DUF3419: Protein of u 84.0 4.5 9.7E-05 34.0 6.7 46 13-61 32-77 (380)
470 KOG1209|consensus 83.5 10 0.00022 29.3 7.7 74 15-100 5-91 (289)
471 cd01065 NAD_bind_Shikimate_DH 83.5 10 0.00022 26.9 7.8 73 16-101 18-92 (155)
472 PRK06718 precorrin-2 dehydroge 83.3 18 0.00038 27.5 10.6 94 16-124 9-103 (202)
473 PRK07478 short chain dehydroge 83.2 10 0.00023 29.3 8.3 78 16-100 5-93 (254)
474 PF01488 Shikimate_DH: Shikima 83.1 7.1 0.00015 27.4 6.6 76 16-102 11-87 (135)
475 PRK15001 SAM-dependent 23S rib 83.0 12 0.00026 31.5 8.8 90 19-121 47-142 (378)
476 PF02737 3HCDH_N: 3-hydroxyacy 82.8 4.9 0.00011 29.8 5.9 98 19-124 1-117 (180)
477 PRK06139 short chain dehydroge 82.7 8.8 0.00019 31.5 7.9 78 16-100 6-94 (330)
478 KOG0821|consensus 82.5 3.1 6.7E-05 32.1 4.7 59 16-82 50-108 (326)
479 PRK06522 2-dehydropantoate 2-r 82.4 13 0.00028 29.8 8.7 97 19-124 2-103 (304)
480 PRK08594 enoyl-(acyl carrier p 82.4 20 0.00044 27.9 9.7 79 16-99 6-96 (257)
481 PRK06701 short chain dehydroge 82.3 15 0.00034 29.2 9.1 76 17-99 46-133 (290)
482 TIGR02817 adh_fam_1 zinc-bindi 82.3 17 0.00037 29.3 9.6 92 17-120 149-246 (336)
483 PRK07097 gluconate 5-dehydroge 82.2 11 0.00024 29.4 8.2 78 16-100 9-97 (265)
484 cd05565 PTS_IIB_lactose PTS_II 82.1 3.2 6.9E-05 27.7 4.2 50 73-122 30-79 (99)
485 KOG2782|consensus 82.1 2.5 5.4E-05 32.5 4.0 57 2-61 31-87 (303)
486 PRK06125 short chain dehydroge 81.7 15 0.00032 28.6 8.6 78 16-99 6-90 (259)
487 COG3510 CmcI Cephalosporin hyd 81.5 9.4 0.0002 28.9 6.8 99 16-124 69-183 (237)
488 PRK09496 trkA potassium transp 81.3 33 0.00071 29.2 13.0 105 7-124 221-333 (453)
489 PRK15057 UDP-glucose 6-dehydro 81.3 18 0.00039 30.5 9.4 39 19-59 2-40 (388)
490 PRK05599 hypothetical protein; 80.9 14 0.00031 28.5 8.3 76 19-100 2-87 (246)
491 KOG1201|consensus 80.8 13 0.00028 30.0 7.8 75 16-100 37-124 (300)
492 cd08290 ETR 2-enoyl thioester 80.7 18 0.00039 29.3 9.1 93 13-120 143-250 (341)
493 PRK07530 3-hydroxybutyryl-CoA 80.6 28 0.0006 27.9 10.0 98 18-123 5-121 (292)
494 PRK07417 arogenate dehydrogena 80.5 8.6 0.00019 30.7 7.0 81 19-117 2-87 (279)
495 cd08266 Zn_ADH_like1 Alcohol d 80.5 7.8 0.00017 31.1 6.9 96 13-121 163-265 (342)
496 PRK08945 putative oxoacyl-(acy 80.5 19 0.00041 27.6 8.8 79 15-99 10-101 (247)
497 PRK08589 short chain dehydroge 80.5 13 0.00029 29.1 8.1 77 16-100 5-92 (272)
498 PRK06124 gluconate 5-dehydroge 80.1 18 0.00039 27.9 8.6 77 16-99 10-97 (256)
499 cd05282 ETR_like 2-enoyl thioe 80.1 6.2 0.00013 31.6 6.2 93 14-120 136-236 (323)
500 TIGR02371 ala_DH_arch alanine 79.8 19 0.00042 29.5 8.9 92 15-119 126-220 (325)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.6e-21 Score=142.38 Aligned_cols=144 Identities=37% Similarity=0.650 Sum_probs=130.1
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
|++++++.+. ++++.+|||||||+|+.+..+++..+ +|+++|..++..+.|++++...++ .|+.++++|.
T Consensus 60 ~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~-----~nV~v~~gDG 129 (209)
T COG2518 60 MVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGY-----ENVTVRHGDG 129 (209)
T ss_pred HHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCC-----CceEEEECCc
Confidence 6788899887 78999999999999999999999954 999999999999999999999664 6799999999
Q ss_pred CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccc
Q psy14962 82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLIN 158 (216)
Q Consensus 82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
...+...++||.|++....+.+++.+.+.|++||++++.+.+.. .+.+..+.+..++.+.....++.+ |.|+.+
T Consensus 130 ~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG~~~-~q~l~~~~k~~~~~~~~~~l~~v~--~vPl~~ 203 (209)
T COG2518 130 SKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGP-AQRLLRITKDGDGNFERRDLFNVR--FVPLVG 203 (209)
T ss_pred ccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEccCC-cEEEEEEEEcCCCcEEEeeeccce--eeecCC
Confidence 98888889999999999999999999999999999999999443 378888888888888888889988 998876
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.87 E-value=5.5e-21 Score=144.96 Aligned_cols=148 Identities=37% Similarity=0.641 Sum_probs=123.8
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
|++.+++.+. +++|.+|||||||+|+.+..+++.+++.+.|+++|.++...+.|++++...+ ..|+.++.+|.
T Consensus 60 ~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg 132 (209)
T PF01135_consen 60 MVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEEEES-G
T ss_pred HHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeEEEcch
Confidence 6788888886 8999999999999999999999998877789999999999999999999876 36899999998
Q ss_pred CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceeccccc
Q psy14962 82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA 159 (216)
Q Consensus 82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (216)
.......++||.|++....+..+..+.+.|++||++++.... ...+.+..+.+..++.+......... |.|+.+.
T Consensus 133 ~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~-~~~~~l~~~~k~~~g~~~~~~~~~~~--fvpl~~~ 207 (209)
T PF01135_consen 133 SEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQ-GGSQRLVRITKKGDGEFSREELFPVR--FVPLVGG 207 (209)
T ss_dssp GGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESS-SSSEEEEEEEEETTTEEEEEEEEEE-----B-BSC
T ss_pred hhccccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEcc-CCceEEEEEEEeCCCcEEEEEEeeEE--EEeccCC
Confidence 877777789999999999999999999999999999999887 55688999999988999999999999 9998753
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.85 E-value=2e-19 Score=137.62 Aligned_cols=146 Identities=35% Similarity=0.592 Sum_probs=120.4
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
+++.+++.+. +.++.+|||+|||+|+.+..+++..++.++|+++|+++++++.+++++...+ ..++.++.+|+
T Consensus 64 ~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~ 136 (212)
T PRK13942 64 MVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCc
Confidence 4566677664 6789999999999999999999887666799999999999999999998755 36899999998
Q ss_pred CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceeccccc
Q psy14962 82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA 159 (216)
Q Consensus 82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (216)
.......++||+|++....+.++..+.+.|||||++++..... ...+..+.+.. +.+.....++.. |.|+.+.
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~--f~~~~~~ 209 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSY--SQELIRVEKDN-GKIIKKKLGEVA--FVPLIGK 209 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEcCC--CcEEEEEEEEC-CEEEEEEeccEE--EEecccC
Confidence 7665556789999999988899999999999999999987654 36666666643 567777778888 8887653
No 4
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.83 E-value=9.3e-19 Score=134.45 Aligned_cols=147 Identities=33% Similarity=0.541 Sum_probs=119.4
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
+++.+++.+. +.++.+|||+|||+|+.+..+++..++.++|+++|.++++++.|++++...+ ..+++++.+|.
T Consensus 65 ~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~ 137 (215)
T TIGR00080 65 MVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDG 137 (215)
T ss_pred HHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCc
Confidence 3556666664 6789999999999999999999987655689999999999999999998865 36899999998
Q ss_pred CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccccc
Q psy14962 82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINAD 160 (216)
Q Consensus 82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (216)
.......++||+|+++.....++..+.+.|+|||++++.... ....+..+.+. +..+......... |.|+....
T Consensus 138 ~~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~--~~pl~~~~ 211 (215)
T TIGR00080 138 TQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE--YLQVLKRAEKR-GGEIIIKDVEPVA--FVPLVGGE 211 (215)
T ss_pred ccCCcccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC--CceEEEEEEEe-CCEEEEEEeeeEE--EEeCCCCc
Confidence 765544568999999999889999999999999999998766 33555555543 4567777777888 88887643
No 5
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.83 E-value=8.7e-19 Score=133.56 Aligned_cols=145 Identities=30% Similarity=0.446 Sum_probs=114.0
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
+.+.+++.+. +.++.+|||+|||+|+.+..+++..++.++|+++|.++++++.|++++...+. ..+++++.+|+
T Consensus 60 ~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~~d~ 133 (205)
T PRK13944 60 MVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYHGDG 133 (205)
T ss_pred HHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEECCc
Confidence 3455566654 56889999999999999999998876556999999999999999999887553 24689999998
Q ss_pred CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecc
Q psy14962 82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPL 156 (216)
Q Consensus 82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
.......++||+|++.....++++.+.++|+|||++++...... ...+..+.+. +..+......... |.|+
T Consensus 134 ~~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~--f~pl 204 (205)
T PRK13944 134 KRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGV-GQVLYKVVKR-GEKVEKRAITYVL--FVPL 204 (205)
T ss_pred ccCCccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEcCCC-ceEEEEEEEe-CCEEEEEEeceEE--EEec
Confidence 76555557899999999999999999999999999999876543 2455555654 3456666677776 7764
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.83 E-value=1.9e-20 Score=144.78 Aligned_cols=106 Identities=27% Similarity=0.321 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
..+|.+|||+|||||..+..+++..++.++|+++|+|++|++.|+++....+ ..+++++++|++..+.++++||+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~lp~~d~sfD~ 119 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDLPFPDNSFDA 119 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-TT-EEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHhcCCCCceeE
Confidence 5688999999999999999999988777899999999999999999998754 35899999999988888899999
Q ss_pred EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|++...+++ .+++++|+|||||++++...+.
T Consensus 120 v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 120 VTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp EEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 999998866 4589999999999998876544
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=1e-18 Score=134.07 Aligned_cols=106 Identities=29% Similarity=0.375 Sum_probs=94.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
..+|.+|||+|||||.++..+++..+ .++|+++|+|+.|+..|+++..+.+ ..++.++++|++..+.++++||+
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~LPf~D~sFD~ 122 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAENLPFPDNSFDA 122 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhhCCCCCCccCE
Confidence 34899999999999999999999987 6799999999999999999998855 35599999999988889999999
Q ss_pred EEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|.++.++++ .+++++|+|||||++++...+..
T Consensus 123 vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 123 VTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred EEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 999999876 56899999999999988766553
No 8
>KOG1661|consensus
Probab=99.79 E-value=4.9e-18 Score=125.07 Aligned_cols=160 Identities=38% Similarity=0.609 Sum_probs=136.3
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhC-----CCCCCCCCeE
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIR-----PDLLNDGRLH 75 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 75 (216)
|.+.+++.|..+++||.+.||+|+|+|+++..+++.++..+ .++|+|.-++.++.+++++.+.- .+.+...++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 67888999988899999999999999999999998876433 45999999999999999987644 2233456788
Q ss_pred EEeccCCCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceec
Q psy14962 76 LRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINP 155 (216)
Q Consensus 76 ~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (216)
++.+|......+.++||.|++.+.....++.+...|++||.+++........+.+....+..++.......+.+. ++|
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~--yvP 225 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVR--YVP 225 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceE--EEe
Confidence 999999988888899999999999999999999999999999999887666677788888888888888888888 999
Q ss_pred cccccccc
Q psy14962 156 LINADEQN 163 (216)
Q Consensus 156 ~~~~~~~~ 163 (216)
++....+.
T Consensus 226 lt~~~~q~ 233 (237)
T KOG1661|consen 226 LTSRESQP 233 (237)
T ss_pred cccccccc
Confidence 88765553
No 9
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.77 E-value=9.2e-17 Score=123.16 Aligned_cols=142 Identities=36% Similarity=0.576 Sum_probs=112.3
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
.+.+++.+. +.++.+|||+|||+|+.+..+++.. .+++++|.++++++.+++++...+. .++.+..+|..
T Consensus 67 ~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~ 136 (212)
T PRK00312 67 VARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL-----HNVSVRHGDGW 136 (212)
T ss_pred HHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC-----CceEEEECCcc
Confidence 345555553 5788999999999999999888774 3899999999999999999887553 56899999986
Q ss_pred CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccc
Q psy14962 83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLIN 158 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (216)
......++||+|++....++++..+.+.|+|||.+++... ......+..+.+ .++.+.....++.. |.|+.+
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~p~~~ 208 (212)
T PRK00312 137 KGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG-GEEQQLLTRVRK-RGGRFEREVLEEVR--FVPLVK 208 (212)
T ss_pred cCCCcCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc-CCCceEEEEEEE-cCCeEEEEEEccEE--EEecCC
Confidence 5544457899999999999999999999999999999887 333355555555 45567777777777 777764
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=2.8e-17 Score=113.34 Aligned_cols=101 Identities=33% Similarity=0.396 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
|+.+|||+|||+|..+..+++.. ++.+|+++|+|+++++.|+++....+. ..+++++++|+.......++||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDAEFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCCHGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECccccCcccCCCCCEEE
Confidence 68899999999999999999954 467999999999999999999855432 4899999999821222345699999
Q ss_pred ecC-CCCc---------hHHHHHhcCCCCeEEEEee
Q psy14962 96 LST-YVPE---------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 96 ~~~-~~~~---------~~~~~~~~L~~gG~lv~~~ 121 (216)
+.. .... +++.+.+.|+|||++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 998 3321 3688999999999999864
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.72 E-value=2.2e-16 Score=124.54 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=88.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.++.+|||+|||+|..+..+++..++.++|+|+|+|++|++.|+++...... ....++.++++|+...+.++++||+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEeE
Confidence 56789999999999999999998876667999999999999999876532100 0125789999998876666789999
Q ss_pred EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|++...+++ ++.++.++|||||++++.....
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 999888765 4689999999999999976654
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.72 E-value=1e-17 Score=134.98 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.++.+|||+|||+|.++..+++. +.+|+|+|.++++++.|+++....+. ..++.++++|++......++||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHhhhccCCCCEE
Confidence 35679999999999999988865 56999999999999999987654221 247899999986554445789999
Q ss_pred EecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
++..++++ +++.+.++|||||.+++.+.+..
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 99988876 56899999999999999876653
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.70 E-value=6.2e-16 Score=120.07 Aligned_cols=106 Identities=22% Similarity=0.320 Sum_probs=88.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.++.+|||+|||+|..+..+++..+++.+|+++|+++.+++.++++....+ ..++.++.+|........++||+
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~ 117 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAMELPFDDNSFDY 117 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhcCCCCCCCccE
Confidence 5678999999999999999999987667799999999999999999887644 35789999998765555678999
Q ss_pred EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|++...+++ +++++.++|+|||.+++...+.
T Consensus 118 V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 118 VTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 999877655 4578899999999999876544
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=3.3e-16 Score=113.92 Aligned_cols=103 Identities=23% Similarity=0.338 Sum_probs=86.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC--CCcc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D 92 (216)
+.+.+|||+|||+|..+..+++..+++.+++|+|+++++++.|++++...+. .++.+.++|+.. .... +.||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-----~ni~~~~~d~~~-l~~~~~~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-----DNIEFIQGDIED-LPQELEEKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-----TTEEEEESBTTC-GCGCSSTTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-----cccceEEeehhc-cccccCCCee
Confidence 4678999999999999999997666678999999999999999999888653 589999999987 3322 7899
Q ss_pred EEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 93 AIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 93 ~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
+|++..++++ +++.+.+.|+++|.+++....
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999987754 468899999999999986554
No 15
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.69 E-value=2.4e-15 Score=121.17 Aligned_cols=115 Identities=34% Similarity=0.602 Sum_probs=94.7
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
.+.+++.+. ++++.+|||+|||+|+.+..+++..+..+.|+++|.++++++.|++++...+ ..++.++.+|..
T Consensus 69 ~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~ 141 (322)
T PRK13943 69 MALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGY 141 (322)
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChh
Confidence 345555553 5788999999999999999999986544579999999999999999988755 367889999976
Q ss_pred CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
......++||+|++....+..+..+.+.|+|||++++.....
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~~~~ 183 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLK 183 (322)
T ss_pred hcccccCCccEEEECCchHHhHHHHHHhcCCCCEEEEEeCCc
Confidence 555445679999999888888888999999999999876543
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=8.9e-16 Score=125.48 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.++.+|||+|||+|..+..+++.. +.+|+|+|+++.+++.++++....+. ..++.+..+|+......+++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCcccCCCCCCCccEE
Confidence 567899999999999999999875 45999999999999999998876543 357999999987666567899999
Q ss_pred EecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
++...+++ ++.++.++|||||++++..+.
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99887755 457899999999999997643
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.68 E-value=1.1e-16 Score=125.98 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~ 93 (216)
.++.+|||+|||+|..+..+++. +.+|+++|+++++++.|+++....+. ..++.++++|+.... ...++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhhcCCCCCE
Confidence 45679999999999999999987 45999999999999999999877543 257889998876432 23568999
Q ss_pred EEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|++..++++ ++..+.++|||||++++...+..
T Consensus 116 V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 116 ILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred EEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 999988755 46889999999999998766653
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.68 E-value=1.4e-15 Score=113.84 Aligned_cols=105 Identities=22% Similarity=0.277 Sum_probs=87.3
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.++++.+|||+|||+|..+..+++.. ++.+|+++|.++.+++.|+++....++ .+++++.+|...... .++||
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l-----~~i~~~~~d~~~~~~-~~~fD 114 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL-----KNVTVVHGRAEEFGQ-EEKFD 114 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC-----CCEEEEeccHhhCCC-CCCcc
Confidence 35568999999999999999998764 467999999999999999999988663 569999999876544 66899
Q ss_pred EEEecCC--CCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 93 AIYLSTY--VPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 93 ~i~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+|+++.. .+.+++.+.++|+|||++++.....
T Consensus 115 lV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 115 VVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred EEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 9999754 2357789999999999999886554
No 19
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.67 E-value=1e-16 Score=121.29 Aligned_cols=101 Identities=22% Similarity=0.259 Sum_probs=86.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
+|.+|||+|||-|.++..+|+. +++|+|+|.++++++.|+.+....+ .++++.....++....+++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~g------v~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESG------VNIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcc------ccccchhhhHHHHHhcCCCccEEE
Confidence 7899999999999999999998 5799999999999999999988755 346677777665555558999999
Q ss_pred ecCCCCch------HHHHHhcCCCCeEEEEeecCCC
Q psy14962 96 LSTYVPEI------PYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 96 ~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|..+++|+ ++.+.+.+||||.+++++.+..
T Consensus 130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 130 CMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred EhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 99999874 4788999999999999987753
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=2.5e-15 Score=121.76 Aligned_cols=100 Identities=22% Similarity=0.198 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.+|.+|||+|||+|+.+..+++.. + ..|+|+|+|+.++..++......+. ..++.++.+|+..... .++||+|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLGN----DQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEeCCHHHCCC-cCCcCEE
Confidence 367899999999999999998873 2 3799999999988754433222110 2478999999875554 6789999
Q ss_pred EecCCCCc------hHHHHHhcCCCCeEEEEee
Q psy14962 95 YLSTYVPE------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~ 121 (216)
++...+++ +++++++.|+|||.+++..
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99888755 5689999999999999864
No 21
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=2.1e-15 Score=117.85 Aligned_cols=110 Identities=28% Similarity=0.305 Sum_probs=92.3
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT 83 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (216)
..+.+.+ +++||.+|||||||.|.+++.+|+.. +.+|+|+++|+++.+.+++++...|++ .+++++..|...
T Consensus 62 ~~~~~kl--~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd 133 (283)
T COG2230 62 DLILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRD 133 (283)
T ss_pred HHHHHhc--CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEeccccc
Confidence 3444555 48999999999999999999999997 459999999999999999999998763 689999999765
Q ss_pred CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 84 GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.. +.||.|++..++++ +++.+.++|+|||.+++.+...
T Consensus 134 ~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 134 FE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred cc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 43 34999999998865 5689999999999998875444
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=8.6e-16 Score=102.36 Aligned_cols=89 Identities=28% Similarity=0.424 Sum_probs=74.6
Q ss_pred EEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCC
Q psy14962 21 LDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYV 100 (216)
Q Consensus 21 ldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~ 100 (216)
||+|||+|..+..+++. +..+++++|+++++++.++++... .++.+..+|....+.++++||+|++...+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccce
Confidence 79999999999999988 456999999999999999988654 45679999998887778999999999888
Q ss_pred Cc------hHHHHHhcCCCCeEEEE
Q psy14962 101 PE------IPYSILLQLKPGGRLVC 119 (216)
Q Consensus 101 ~~------~~~~~~~~L~~gG~lv~ 119 (216)
++ +++++.++|||||++++
T Consensus 71 ~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 76 45899999999999986
No 23
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.65 E-value=1.7e-15 Score=119.71 Aligned_cols=109 Identities=32% Similarity=0.341 Sum_probs=82.6
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+..+++.+. +++|.+|||||||.|..+..++++. +++|+|+++|++..+.+++++...|+ .+++.+...|..
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~~ 122 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-GG
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeecc
Confidence 344455553 7899999999999999999999997 45999999999999999999998775 367999999976
Q ss_pred CCCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962 83 TGLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~ 122 (216)
... .+||.|++...+++ +++.+.++|+|||.+++...
T Consensus 123 ~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 123 DLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp G------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred ccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 432 38999999888866 35899999999999998643
No 24
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.64 E-value=1.5e-14 Score=101.29 Aligned_cols=110 Identities=25% Similarity=0.324 Sum_probs=86.1
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.+++.+. +.++.+|+|+|||+|..+..+++..+ ..+|+++|+++.+++.++++....+. .++.++..|....
T Consensus 10 ~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~ 81 (124)
T TIGR02469 10 LTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV-----SNIVIVEGDAPEA 81 (124)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEecccccc
Confidence 3444443 45678999999999999999998853 46999999999999999998877542 5688888886532
Q ss_pred C-CCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEeec
Q psy14962 85 L-LHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 85 ~-~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~ 122 (216)
. ....+||+|++...... +++.+.+.|+|||++++...
T Consensus 82 ~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 82 LEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 2 22358999999876544 67899999999999998653
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.64 E-value=4.8e-15 Score=116.16 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=83.7
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF 91 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 91 (216)
.+.++.+|||+|||+|..+..+++.. .++.+++++|+|+.|++.|++++...+. ..+++++++|+..... ..+
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d~~~~~~--~~~ 126 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDIAI--ENA 126 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCChhhCCC--CCC
Confidence 35678999999999999998888753 3567999999999999999999876542 2478999999865433 348
Q ss_pred cEEEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962 92 DAIYLSTYVPE--------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 92 D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~ 121 (216)
|+|+++..+++ +++++++.|+|||.+++..
T Consensus 127 D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 127 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99998776543 5689999999999999975
No 26
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.64 E-value=1.4e-14 Score=106.04 Aligned_cols=113 Identities=29% Similarity=0.387 Sum_probs=95.1
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
.+..|. +.+|++++|+|||||.++++++ ..+|..+|+++|.++++++..+++.++.+ .+|+.++.+++-..+
T Consensus 26 ~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~Ap~~L 97 (187)
T COG2242 26 TLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccchHhh
Confidence 344444 6899999999999999999999 55778899999999999999999999966 589999999987555
Q ss_pred CCCCCccEEEecCCC--CchHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 86 LHQAPFDAIYLSTYV--PEIPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
....++|.||....- +.+++.+...|||||++|+..-..+.
T Consensus 98 ~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 98 PDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred cCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 444479999998773 44778999999999999998766643
No 27
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=5.1e-15 Score=116.60 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=82.6
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.+++.+. ..++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.|++ .++.++.+|+...
T Consensus 20 ~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~------------~~~~~~~~d~~~~ 84 (255)
T PRK14103 20 DLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE------------RGVDARTGDVRDW 84 (255)
T ss_pred HHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh------------cCCcEEEcChhhC
Confidence 3444443 4578899999999999999999875 56799999999999998864 2477889998644
Q ss_pred CCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 85 LLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
. ..++||+|+++..+++ +++++.+.|||||.+++..+.
T Consensus 85 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 85 K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 3 4568999999998766 357888999999999987643
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.63 E-value=1e-14 Score=108.02 Aligned_cols=102 Identities=26% Similarity=0.280 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++..++. .+++++..|...... .++||+|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~~~~d~~~~~~-~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL-----ENVEVVQSDLFEALP-DGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEEEESSTTTTCC-TTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc-----ccccccccccccccc-ccceeEEE
Confidence 67899999999999999999874 556799999999999999999998764 348999999875544 67899999
Q ss_pred ecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 96 LSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 96 ~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
++.|++. ++....++|+|||.+++.....
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 9998743 4577889999999998765544
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.62 E-value=9.7e-15 Score=116.11 Aligned_cols=105 Identities=27% Similarity=0.366 Sum_probs=87.6
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.+.++.+|||+|||+|..+..+++..++..+|+++|+++.+++.|+++....+ ..+++++.+|+......+++||
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCcee
Confidence 35789999999999999988888887766689999999999999999887755 3578899999876555567899
Q ss_pred EEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962 93 AIYLSTYVPE------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 93 ~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~ 122 (216)
+|+++..+++ +++++.++|||||++++...
T Consensus 149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9998876543 56899999999999998643
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=1.2e-14 Score=110.13 Aligned_cols=104 Identities=18% Similarity=0.141 Sum_probs=81.9
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
+++.+. ..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++.....+. .++++...|+....
T Consensus 22 l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~~ 91 (197)
T PRK11207 22 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNNLT 91 (197)
T ss_pred HHHhcc--cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhhCC
Confidence 444443 346789999999999999999986 45999999999999999998877542 56888888876443
Q ss_pred CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~ 120 (216)
. .++||+|++...+++ ++..+.++|+|||.+++.
T Consensus 92 ~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 92 F-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred c-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 457999999877643 457889999999996553
No 31
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.62 E-value=8.7e-15 Score=115.62 Aligned_cols=101 Identities=25% Similarity=0.225 Sum_probs=82.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|+++... ..++.+..+|+.....++++||+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcccCCCCCCCeEE
Confidence 6788999999999999998888764 45999999999999999987643 25789999998765555678999
Q ss_pred EEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962 94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
|++...+.+ +++++.++|||||++++....
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 998654422 557889999999999997553
No 32
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.62 E-value=8.6e-15 Score=109.24 Aligned_cols=100 Identities=24% Similarity=0.265 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
++.+|||+|||+|..+..++.. .+..+|+++|.++.+++.++++..+.+. .++.++.+|+... ...++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~-~~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDF-QHEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhc-cccCCccEEE
Confidence 4889999999999999998865 3456899999999999999998887552 5799999998754 2356899999
Q ss_pred ecCCCC---chHHHHHhcCCCCeEEEEeecC
Q psy14962 96 LSTYVP---EIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 96 ~~~~~~---~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
+.. +. .+++.+.++|+|||.+++....
T Consensus 115 s~~-~~~~~~~~~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 115 SRA-LASLNVLLELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred ehh-hhCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 976 43 3557889999999999986543
No 33
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.60 E-value=7.6e-15 Score=115.37 Aligned_cols=99 Identities=22% Similarity=0.214 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.++.+|||+|||+|..+..+++. +.+++++|+|+.+++.++++. ....++++|+...+..+++||+|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD----------AADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC----------CCCCEEEcCcccCcCCCCcEEEE
Confidence 35679999999999999888765 459999999999999988763 23467888987655566789999
Q ss_pred EecCCCCc------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
+++..+++ ++.++.++|+|||.++++......
T Consensus 108 ~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 108 WSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred EECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 99888755 468899999999999998876643
No 34
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3e-14 Score=108.79 Aligned_cols=116 Identities=28% Similarity=0.400 Sum_probs=100.5
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT 83 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (216)
+.|+..+. +.||.+|+|.|.|+|.++..+++.+++.++|+..|..++.++.|++++...++ .+++.+...|...
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d~v~~~~~Dv~~ 157 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GDRVTLKLGDVRE 157 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----ccceEEEeccccc
Confidence 34555554 78999999999999999999999999888999999999999999999999775 3558899999876
Q ss_pred CCCCCCCccEEEecCCCCc-hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 84 GLLHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
....+ .||+|+.+.+-+| .++.+++.|+|||.+++.+++.+.
T Consensus 158 ~~~~~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 158 GIDEE-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred ccccc-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 65433 8999999999988 789999999999999998877654
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=2.5e-14 Score=108.19 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=80.2
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT 83 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (216)
..+++.+. ..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....++ ++.+...|...
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~ 88 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINA 88 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchh
Confidence 34555554 345679999999999999999986 45999999999999999988776542 36677777653
Q ss_pred CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962 84 GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~ 120 (216)
... .++||+|++...+++ +++.+.+.|+|||++++.
T Consensus 89 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 89 AAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 332 357999999877643 457888999999996654
No 36
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.60 E-value=3.4e-14 Score=110.92 Aligned_cols=103 Identities=16% Similarity=0.242 Sum_probs=83.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
+.++.+|||+|||+|..+..+++.+. ++.+++|+|+++.|++.|++++...+. ..+++++.+|+..... ..+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~~--~~~d 124 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVEI--KNAS 124 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCCC--CCCC
Confidence 35788999999999999999988753 567999999999999999998876432 2578999999875543 3489
Q ss_pred EEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962 93 AIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 93 ~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~ 122 (216)
+|++...+++ +++++.+.|+|||.+++...
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9998877654 45788999999999999753
No 37
>PRK04266 fibrillarin; Provisional
Probab=99.59 E-value=4.4e-14 Score=108.78 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=81.3
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCC
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQA 89 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 89 (216)
.+.++.+|||+|||+|..+..+++.++ .+.|+++|+++.|++.+.+++.. ..|+.++.+|..... .-.+
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhhhccc
Confidence 467999999999999999999999875 56999999999999988777654 257888899976321 1124
Q ss_pred CccEEEecCCCCc----hHHHHHhcCCCCeEEEEeec
Q psy14962 90 PFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 90 ~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~ 122 (216)
+||+|+++...++ ++..+.++|||||.+++++.
T Consensus 141 ~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 141 KVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred cCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6999998766543 36889999999999999644
No 38
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.59 E-value=3.2e-14 Score=107.88 Aligned_cols=108 Identities=24% Similarity=0.350 Sum_probs=86.6
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPF 91 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~ 91 (216)
.+.++.+|||+|||+|.++..+++..++..+|+++|.++.+++.+++++...++ ..++.++.+|....... .+.|
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEEEEechhhhHhhcCCCC
Confidence 367899999999999999999998766567999999999999999999887552 25788888887643222 3579
Q ss_pred cEEEecCCC---CchHHHHHhcCCCCeEEEEeecCC
Q psy14962 92 DAIYLSTYV---PEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 92 D~i~~~~~~---~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|.|+++... ..+++.+.+.|+|||++++.....
T Consensus 113 D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 113 DRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred CEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 999996543 446788899999999999865544
No 39
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=3.4e-14 Score=112.09 Aligned_cols=105 Identities=16% Similarity=0.241 Sum_probs=84.2
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.+++.+. +.++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.|+++. .++.++.+|+...
T Consensus 22 ~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~ 88 (258)
T PRK01683 22 DLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASW 88 (258)
T ss_pred HHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhcc
Confidence 3444443 4678899999999999999999875 4569999999999999998763 4578888997643
Q ss_pred CCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 85 LLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
. ..++||+|+++..+++ ++..+.++|+|||.+++..+.
T Consensus 89 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 89 Q-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred C-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 3 3458999999998865 468899999999999997644
No 40
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.58 E-value=2e-14 Score=109.32 Aligned_cols=104 Identities=24% Similarity=0.292 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC-CCCC--CCCCCcc
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG-RTGL--LHQAPFD 92 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D 92 (216)
++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.|+++....+ ..++.++++|+ .... ...++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCccccc
Confidence 67899999999999999998875 45689999999999999999887754 36799999998 4322 3456899
Q ss_pred EEEecCCCC--------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 93 AIYLSTYVP--------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.|++..+.+ .+++.+.++|+|||.+++.+.+..
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 999875432 257899999999999999876553
No 41
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.58 E-value=1.8e-14 Score=111.28 Aligned_cols=99 Identities=25% Similarity=0.291 Sum_probs=81.4
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS 97 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 97 (216)
++|||+|||+|..+..+++.. ++.+++++|+|+++++.+++++...++ ..++.+...|....+. .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDPF-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCCC-CCCCCEeehH
Confidence 379999999999999999875 356999999999999999999877554 3578999999864433 3579999987
Q ss_pred CCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962 98 TYVPE------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 98 ~~~~~------~~~~~~~~L~~gG~lv~~~~ 122 (216)
..+++ +++++.++|+|||++++...
T Consensus 75 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76643 56899999999999998754
No 42
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.57 E-value=4.5e-14 Score=113.48 Aligned_cols=102 Identities=20% Similarity=0.134 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
..+|.+|||+|||+|+++..++.. ++ ..|+|+|+|+.|+..++..-.... ...++.+...++..... ..+||+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~----~~~~v~~~~~~ie~lp~-~~~FD~ 191 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLD----NDKRAILEPLGIEQLHE-LYAFDT 191 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhc----cCCCeEEEECCHHHCCC-CCCcCE
Confidence 356889999999999999888876 22 379999999999876533211111 02467788777654433 347999
Q ss_pred EEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962 94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~ 122 (216)
|++...+.+ .+.+++++|+|||.+++.+.
T Consensus 192 V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred EEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 999988765 56899999999999999653
No 43
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.57 E-value=1.4e-13 Score=103.43 Aligned_cols=101 Identities=24% Similarity=0.271 Sum_probs=82.0
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++....+. .++++..+|..... .++||+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~~~~~d~~~~~--~~~~D~ 100 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-----GNIDIIPGEAPIEL--PGKADA 100 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeEEEecCchhhc--CcCCCE
Confidence 5678899999999999999999874 457999999999999999998877552 56888888864322 357999
Q ss_pred EEecCCCC---chHHHHHhcCCCCeEEEEeec
Q psy14962 94 IYLSTYVP---EIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 94 i~~~~~~~---~~~~~~~~~L~~gG~lv~~~~ 122 (216)
|++..... .++..+.+.|+|||++++...
T Consensus 101 v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 101 IFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 99876543 356788899999999988643
No 44
>PRK08317 hypothetical protein; Provisional
Probab=99.57 E-value=8.5e-14 Score=108.25 Aligned_cols=104 Identities=27% Similarity=0.360 Sum_probs=85.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++.... ..++.+...|........++||+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~~~D~ 90 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADGLPFPDGSFDA 90 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEecccccCCCCCCCceE
Confidence 678899999999999999999988756679999999999999998873321 35788999987655445678999
Q ss_pred EEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
|++...+++ +++++.++|+|||.+++..+.
T Consensus 91 v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 91 VRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred EEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 999887754 568999999999999987654
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.57 E-value=5.9e-14 Score=119.92 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=87.2
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
+++.+. +.++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.|+++.... ..++.+..+|+....
T Consensus 258 l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 258 FVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKT 327 (475)
T ss_pred HHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCC
Confidence 444443 4678899999999999999998875 459999999999999998876532 257899999987655
Q ss_pred CCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 86 LHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
.++++||+|++...+.+ +++.++++|+|||.+++....
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 55678999999888765 568999999999999997543
No 46
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.57 E-value=7.2e-14 Score=111.07 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGK--TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
.+.+|||+|||+|.++..+++.... ...++|+|+|+.+++.|+++. .++.+..+|....+..+++||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCceeE
Confidence 4578999999999999999877532 237999999999999987652 4688899998766666788999
Q ss_pred EEecCCCCchHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 94 IYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
|++... +...+++.++|||||++++..+.+..
T Consensus 155 I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 155 IIRIYA-PCKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred EEEecC-CCCHHHHHhhccCCCEEEEEeCCCcc
Confidence 998665 45668999999999999998877643
No 47
>KOG1270|consensus
Probab=99.57 E-value=1.9e-15 Score=115.25 Aligned_cols=100 Identities=29% Similarity=0.375 Sum_probs=78.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCC----CeEEEeccCCCCCCCCCCcc
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG----RLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D 92 (216)
|.+|||+|||+|.++..+|+. +++|+|+|+++.+++.|+++....- .... ++.+.+.|++.. .++||
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP---~~~~~~~y~l~~~~~~~E~~---~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDP---VLEGAIAYRLEYEDTDVEGL---TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCc---hhccccceeeehhhcchhhc---ccccc
Confidence 478999999999999999998 5699999999999999999833211 1122 245556665433 34599
Q ss_pred EEEecCCCCch------HHHHHhcCCCCeEEEEeecCCC
Q psy14962 93 AIYLSTYVPEI------PYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+|+|...++|+ +..+.+.|||+|.+++++.+..
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 99999998774 5788899999999999877664
No 48
>KOG1540|consensus
Probab=99.57 E-value=9.8e-14 Score=105.48 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=90.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCC
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKT-----GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQA 89 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (216)
.++.++||++||||.++-.+.++.+.. .+|+++|+++.|+..++++..+.++ ....++.++++|++..+.+++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL--KASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcCCceEEEeCCcccCCCCCC
Confidence 457899999999999999999887542 6999999999999999999866443 112348899999998888899
Q ss_pred CccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 90 PFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 90 ~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+||...+..++++ .+++++|+|||||+|.+...+..
T Consensus 177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 9999999888765 56899999999999998765553
No 49
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.57 E-value=8.6e-14 Score=107.87 Aligned_cols=117 Identities=31% Similarity=0.457 Sum_probs=93.8
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT 83 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (216)
..|+..+. +.||++|||.|.|+|.++..+++.++|.++|+..|..++..+.|++++..+++ .+++.+.+.|+..
T Consensus 30 ~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl----~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 30 SYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL----DDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----CTTEEEEES-GGC
T ss_pred HHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----CCCceeEecceec
Confidence 34555554 89999999999999999999999999999999999999999999999999886 4789999999853
Q ss_pred -CCC--CCCCccEEEecCCCCc-hHHHHHhcC-CCCeEEEEeecCCCC
Q psy14962 84 -GLL--HQAPFDAIYLSTYVPE-IPYSILLQL-KPGGRLVCGVGKSKS 126 (216)
Q Consensus 84 -~~~--~~~~~D~i~~~~~~~~-~~~~~~~~L-~~gG~lv~~~~~~~~ 126 (216)
... .+..+|.|+.+.+-+| .+..+.+.| ++||++.+-.++-+.
T Consensus 104 ~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQ 151 (247)
T ss_dssp G--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred ccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHH
Confidence 221 1367999999999998 779999999 899999888777643
No 50
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.55 E-value=2.3e-14 Score=106.37 Aligned_cols=99 Identities=19% Similarity=0.291 Sum_probs=84.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.+..+|.|+|||+|..+..++++. |++.++|+|.|++|++.|++++ .+++|..+|... +.++.+.|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~-w~p~~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRT-WKPEQPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhh-cCCCCccch
Confidence 4566799999999999999999998 5789999999999999998764 568999999763 344567999
Q ss_pred EEecCCCCch------HHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYVPEI------PYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~ 124 (216)
++++..++++ +.++...|.|||.+-++.+..
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999999774 478889999999999987655
No 51
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.55 E-value=5e-14 Score=106.48 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCCCcc
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQAPFD 92 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D 92 (216)
...+|||+|||+|.++..+++.. |+..++|+|+++.+++.|+++....++ .++.++.+|+.... ...+++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL-----KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCEEEEccCHHHHHHhhCCCCcee
Confidence 56799999999999999999874 567999999999999999998887653 68999999986322 3345899
Q ss_pred EEEecCCCC--------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 93 AIYLSTYVP--------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.|+++.+.+ .++..+.++|||||.+++.+.+..
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 999886543 257889999999999999876654
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.54 E-value=1.5e-14 Score=97.91 Aligned_cols=90 Identities=27% Similarity=0.376 Sum_probs=70.1
Q ss_pred EEEEcCCCchHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962 20 VLDIGSGSGFMSCVFAELV--GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS 97 (216)
Q Consensus 20 vldiG~G~G~~~~~l~~~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 97 (216)
|||+|||+|..+..+++.+ ++..+++++|+|+++++.++++....+ .+++++++|+.......++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999886 333699999999999999999987643 37899999997654456799999995
Q ss_pred CC-CCc--------hHHHHHhcCCCCe
Q psy14962 98 TY-VPE--------IPYSILLQLKPGG 115 (216)
Q Consensus 98 ~~-~~~--------~~~~~~~~L~~gG 115 (216)
.. +.+ +++++.++|+|||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 44 543 4588889999998
No 53
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.54 E-value=1.9e-13 Score=108.12 Aligned_cols=108 Identities=23% Similarity=0.256 Sum_probs=87.6
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.+++|.+|||+|||+|..+..++...+..+.|+++|+++.+++.+++++.+.+. .++.++..|........+.||
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHHHhhhhccCCC
Confidence 357899999999999999999998876556999999999999999999988663 578899999764333345699
Q ss_pred EEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 93 AIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+|+++.+.. .+++.+.+.|||||++++++.+..
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999876631 145677789999999999877653
No 54
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.54 E-value=2.1e-13 Score=112.00 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=81.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
+.+|||+|||+|.++..+++.. |..+|+++|.|+.+++.|++++..++.+ ...++.+...|..... ...+||+|++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~-~~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV-EPFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC-CCCCEEEEEE
Confidence 4699999999999999999884 5679999999999999999998765421 1236788888875433 3457999999
Q ss_pred cCCCCc-----------hHHHHHhcCCCCeEEEEeec
Q psy14962 97 STYVPE-----------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 97 ~~~~~~-----------~~~~~~~~L~~gG~lv~~~~ 122 (216)
+.+++. ++..+.++|+|||.+++...
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 988743 45778899999999999753
No 55
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=2.4e-13 Score=108.84 Aligned_cols=96 Identities=22% Similarity=0.188 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
++.+|||+|||+|..+..+++. +.+|+++|.|+.+++.++++....+ .++.+...|+..... .++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~------l~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN------LNIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC------CceEEEEechhcccc-cCCccEEE
Confidence 3459999999999999999886 4599999999999999999887754 267888888764333 56899999
Q ss_pred ecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962 96 LSTYVPE--------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 96 ~~~~~~~--------~~~~~~~~L~~gG~lv~~~ 121 (216)
+...+++ +++.+.++|+|||++++.+
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9877543 4688899999999977644
No 56
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.52 E-value=2.4e-13 Score=112.55 Aligned_cols=98 Identities=29% Similarity=0.237 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.++.+|||+|||+|..+..+++.. +.+|+|+|+|+++++.|+++... .++++...|.... .++||.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l---~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL---NGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc---CCCCCE
Confidence 5789999999999999999999875 45999999999999999988743 3477888886543 467999
Q ss_pred EEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|++...+++ +++.+.++|||||++++.....
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 998776543 4688899999999999976543
No 57
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.52 E-value=2.3e-13 Score=104.83 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=77.4
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.+++.+.....++.+|||+|||+|.++..+++. +.+++|+|++++++..|++++...+. ..++.+.++|+...
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLSL 116 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhhC
Confidence 344444322456889999999999999999876 35999999999999999998876431 24788999997654
Q ss_pred CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEE
Q psy14962 85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVC 119 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~ 119 (216)
. ++||+|++...+.+ ++..+.+.+++++.+.+
T Consensus 117 ~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3 67999998766533 34566677776655544
No 58
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.51 E-value=1.6e-13 Score=107.71 Aligned_cols=99 Identities=19% Similarity=0.170 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHH--HHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAW--ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
.|.+|||||||+|+++-.+++..+ ..|+|+|.+.-...... +++... ...+.++...++..+. .+.||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~~~lplgvE~Lp~-~~~FDt 185 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQ------DPPVFELPLGVEDLPN-LGAFDT 185 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCC------CccEEEcCcchhhccc-cCCcCE
Confidence 689999999999999999998832 38999999987654422 222210 1223333233333333 678999
Q ss_pred EEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
|++..++.| .+.+++..|+|||.+++.+.-
T Consensus 186 VF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 186 VFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred EEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 999999876 568999999999999996543
No 59
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.51 E-value=4.2e-14 Score=98.13 Aligned_cols=100 Identities=31% Similarity=0.288 Sum_probs=81.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCccEE
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFDAI 94 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i 94 (216)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...+. ..+++++.+|..... ...++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhhccCceeEEE
Confidence 5789999999999999999884 46999999999999999999888553 367999999986433 346789999
Q ss_pred EecCCCCc--------------hHHHHHhcCCCCeEEEEeec
Q psy14962 95 YLSTYVPE--------------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 95 ~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~ 122 (216)
+++.++.. +++.+.++|+|||.+++.++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998742 35788899999999998764
No 60
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.51 E-value=1.8e-13 Score=106.49 Aligned_cols=112 Identities=22% Similarity=0.289 Sum_probs=86.6
Q ss_pred HHHHHHhcccC-CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 4 ARIIELLEPKI-QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 4 ~~~~~~l~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
..+++.+.... ..+.+|||+|||+|..+..+++.. +..+++++|+++.++..++++.. .++.++.+|..
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~ 90 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAE 90 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchh
Confidence 34444444211 345789999999999999998874 45689999999999988877542 36788999987
Q ss_pred CCCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 83 TGLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.....+++||+|++...+++ ++..+.+.|+|||.+++..+...
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 65555678999999887754 56889999999999999876553
No 61
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.51 E-value=3e-13 Score=108.27 Aligned_cols=108 Identities=24% Similarity=0.278 Sum_probs=80.7
Q ss_pred HHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC
Q psy14962 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL 86 (216)
Q Consensus 7 ~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (216)
++.+.....++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++..+++ ..++.+...+... .
T Consensus 150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~----~~~~~~~~~~~~~--~ 221 (288)
T TIGR00406 150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQV----SDRLQVKLIYLEQ--P 221 (288)
T ss_pred HHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeccccc--c
Confidence 3344333467899999999999999888765 3 34899999999999999999887653 2345556555322 2
Q ss_pred CCCCccEEEecCCCC---chHHHHHhcCCCCeEEEEeec
Q psy14962 87 HQAPFDAIYLSTYVP---EIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~~ 122 (216)
..++||+|+++.... .++..+.++|+|||+++++..
T Consensus 222 ~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 222 IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 246899999987654 356788999999999999643
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.51 E-value=1.7e-13 Score=102.32 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++...+ .++.++.+|..... .++||+|
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~--~~~fD~V 86 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKGV--RGKFDVI 86 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccccc--CCcccEE
Confidence 456799999999999999998873 289999999999999999987644 35788888875433 3489999
Q ss_pred EecCCCC---------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 95 YLSTYVP---------------------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 95 ~~~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+++.++. .+++.+.++|+|||.+++......
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 9987752 135778899999999988765543
No 63
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.51 E-value=5.3e-13 Score=108.84 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
...+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++..+++ ...++..|..... .++||+|+
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~~--~~~fDlIv 266 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSDI--KGRFDMII 266 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEccccccc--CCCccEEE
Confidence 34589999999999999999874 456999999999999999999888652 3467777765432 46799999
Q ss_pred ecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 96 LSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 96 ~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
++.+++. ++..+.+.|+|||.+++.....
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 9998863 4577889999999998876543
No 64
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.51 E-value=2.6e-13 Score=109.97 Aligned_cols=98 Identities=17% Similarity=0.088 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.++.+|||+|||+|..+..+++..+ +.+++++|.++++++.|+++... .+++++.+|+......+++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence 4678999999999999998888753 46999999999999999887543 46888999987655556789999
Q ss_pred EecCCCCc------hHHHHHhcCCCCeEEEEee
Q psy14962 95 YLSTYVPE------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~ 121 (216)
++...+++ .++++.++|+|||.+++..
T Consensus 183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99887654 5689999999999998753
No 65
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.4e-13 Score=108.55 Aligned_cols=109 Identities=29% Similarity=0.369 Sum_probs=81.0
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.+++.+...+++|.+|||+|||+|.+++.+++.. ..+|+|+|++|..++.|++++..++.+ ..++....+.. .
T Consensus 151 lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~----~~~~~~~~~~~-~ 223 (300)
T COG2264 151 LCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVE----LLVQAKGFLLL-E 223 (300)
T ss_pred HHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCc----hhhhcccccch-h
Confidence 4566666667899999999999999999988873 238999999999999999999986632 11112222211 1
Q ss_pred CCCCCCccEEEecCCC---CchHHHHHhcCCCCeEEEEe
Q psy14962 85 LLHQAPFDAIYLSTYV---PEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~lv~~ 120 (216)
....++||+|+++-.. ..+...+.+.+||||+++++
T Consensus 224 ~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 224 VPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred hcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEE
Confidence 2233689999998633 33558889999999999996
No 66
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.51 E-value=4.2e-13 Score=109.40 Aligned_cols=105 Identities=19% Similarity=0.144 Sum_probs=85.9
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.++++.+|||+|||+|.++..++.. +..++|+|+++.++..+++++...+. .++.+..+|+.......++||
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~-----~~i~~~~~D~~~l~~~~~~~D 250 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGI-----EDFFVKRGDATKLPLSSESVD 250 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCC-----CCCeEEecchhcCCcccCCCC
Confidence 3678999999999999999887665 45999999999999999999988664 457889999876555567899
Q ss_pred EEEecCCCC---------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 93 AIYLSTYVP---------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+|++++|+. .++..+.++|+|||++++..++..
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 999987641 245778899999999998876653
No 67
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=4e-13 Score=113.00 Aligned_cols=108 Identities=21% Similarity=0.314 Sum_probs=88.5
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPF 91 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 91 (216)
...+|.+|||+|||+|..+..++...+++++|+++|+++.+++.+++++.+.++ .++.+...|+.... ...++|
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhhhhhccC
Confidence 357899999999999999999999876667999999999999999999988663 56889999986432 124679
Q ss_pred cEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 92 DAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 92 D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|.|+++.+.. .++.++.+.|||||++++++++..
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999877641 124677899999999999888764
No 68
>PTZ00146 fibrillarin; Provisional
Probab=99.51 E-value=5e-13 Score=105.39 Aligned_cols=114 Identities=25% Similarity=0.342 Sum_probs=84.1
Q ss_pred HHHHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 3 QARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 3 ~~~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
.+.++.-+. ..+.++.+|||+|||+|.++..++..+++...|+++|+++.+.+...+.... ..|+.++..|+
T Consensus 118 aa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~Da 190 (293)
T PTZ00146 118 AAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIEDA 190 (293)
T ss_pred HHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECCc
Confidence 344434333 2468999999999999999999999987767999999998866555444333 25788899997
Q ss_pred CCCC---CCCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeecC
Q psy14962 82 RTGL---LHQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 82 ~~~~---~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~ 123 (216)
.... .....+|+|+++...++ +..++.++|||||.+++.+..
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika 239 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKA 239 (293)
T ss_pred cChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEec
Confidence 6321 12347999999887554 345788999999999996443
No 69
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.50 E-value=1.5e-13 Score=106.64 Aligned_cols=110 Identities=20% Similarity=0.291 Sum_probs=88.0
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
++..+. ...++.+|||+|||+|+.+..+++..+++++++++|.++++++.|++++...++ .++++++.+|+....
T Consensus 59 ~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~~L 133 (234)
T PLN02781 59 FLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHH
Confidence 333443 245678999999999999999998876667999999999999999999998775 367999999986432
Q ss_pred C------CCCCccEEEecCC---CCchHHHHHhcCCCCeEEEEe
Q psy14962 86 L------HQAPFDAIYLSTY---VPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~------~~~~~D~i~~~~~---~~~~~~~~~~~L~~gG~lv~~ 120 (216)
. ..++||+|+++.. ...++..+.+.|+|||.+++.
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 1 1358999999864 344668889999999998874
No 70
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.50 E-value=2.3e-13 Score=109.55 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=80.2
Q ss_pred HHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-C
Q psy14962 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-L 86 (216)
Q Consensus 8 ~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 86 (216)
+.+...+.++.+|||+|||+|..+..+++.+..+.+++++|+|++|++.+++++..... ..++.++++|+.... .
T Consensus 55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFTQPLAL 130 (301)
T ss_pred HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEcccchhhh
Confidence 33333456778999999999999999998864246899999999999999998765321 235677899986432 1
Q ss_pred CCC----CccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 87 HQA----PFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 87 ~~~----~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
... ...+++++..+.+ +++++++.|+|||.+++......
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 111 2234444444432 56889999999999998665443
No 71
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.49 E-value=1.1e-12 Score=99.35 Aligned_cols=105 Identities=23% Similarity=0.303 Sum_probs=81.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCcc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFD 92 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D 92 (216)
+.++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.+++++...+ ..+++++.+|+...... ...+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VKNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCeEEEECchHHHHhhCCCCCC
Confidence 4678999999999999999998763 45799999999999999999988755 35788999887532211 12357
Q ss_pred EEEecCC--CCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 93 AIYLSTY--VPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 93 ~i~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.++.... +..++..+.+.|+|||++++.....
T Consensus 112 ~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 112 RVCIEGGRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred EEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 7766543 2457789999999999999987654
No 72
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.49 E-value=3.2e-13 Score=103.93 Aligned_cols=106 Identities=26% Similarity=0.318 Sum_probs=86.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPF 91 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~ 91 (216)
.....+|||+|||+|.++..++++..+ ++++++|+++++.+.|++++..+.+ ..++++++.|+..... ...+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhccccccc
Confidence 344789999999999999999998643 7999999999999999999887654 4899999999874432 23579
Q ss_pred cEEEecCCCCc------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 92 DAIYLSTYVPE------------------------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 92 D~i~~~~~~~~------------------------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|+|+|++|+.. +++...++||+||.+.+..+..
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 99999999621 3467779999999999876655
No 73
>PRK05785 hypothetical protein; Provisional
Probab=99.49 E-value=5.2e-13 Score=103.16 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=73.7
Q ss_pred HHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC
Q psy14962 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL 86 (216)
Q Consensus 7 ~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (216)
++.+.....++.+|||+|||||..+..+++.. +.+|+|+|+|++|++.|+++ ..++++|++..+.
T Consensus 42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~-------------~~~~~~d~~~lp~ 106 (226)
T PRK05785 42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA-------------DDKVVGSFEALPF 106 (226)
T ss_pred HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc-------------cceEEechhhCCC
Confidence 34443333457899999999999999998875 35999999999999998753 1346788876666
Q ss_pred CCCCccEEEecCCCCc------hHHHHHhcCCCC
Q psy14962 87 HQAPFDAIYLSTYVPE------IPYSILLQLKPG 114 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~------~~~~~~~~L~~g 114 (216)
.+++||+|++...+++ .++++.++|||.
T Consensus 107 ~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 107 RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 7789999999988865 468999999994
No 74
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.49 E-value=7e-13 Score=105.80 Aligned_cols=103 Identities=23% Similarity=0.192 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
++.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.|++++...++ ..++.++.+|+.... ..++||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~~~~D~~~~~-~~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGL----EDRVTLIQSDLFAAL-PGRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhcc-CCCCccEEE
Confidence 45789999999999999999875 456999999999999999999987653 257899999986443 345799999
Q ss_pred ecCCCC-------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 96 LSTYVP-------------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 96 ~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
++.+.. .++..+.++|+|||++++.....
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS 254 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 986631 12456678999999999876643
No 75
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=6e-13 Score=112.29 Aligned_cols=106 Identities=27% Similarity=0.370 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCC
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQA 89 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 89 (216)
..+|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++...|. .++.++++|+.... ...+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhcccccccccc
Confidence 56889999999999999999999876557999999999999999999988663 67899999986543 2246
Q ss_pred CccEEEecCCC----------------------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962 90 PFDAIYLSTYV----------------------------PEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 90 ~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+||.|+++.+. ..++.++.+.|||||++++++++.
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 79999987652 123577889999999999887655
No 76
>PRK14967 putative methyltransferase; Provisional
Probab=99.49 E-value=6.2e-13 Score=102.73 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=80.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++...+ .++.++.+|+.... ..++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~~-~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARAV-EFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhhc-cCCCeeE
Confidence 567889999999999999998876 2 2489999999999999999887654 35788888876432 3568999
Q ss_pred EEecCCCC---------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYVP---------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|+++.++. .+++.+.++|+|||++++.....
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99986532 13466789999999999865443
No 77
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=9.7e-13 Score=111.36 Aligned_cols=106 Identities=25% Similarity=0.269 Sum_probs=87.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
..+|.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++...+. .++.++.+|+.... ..++||+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~v~~~~~Da~~~~-~~~~fD~ 321 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----TIIETIEGDARSFS-PEEQPDA 321 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----CeEEEEeCcccccc-cCCCCCE
Confidence 56889999999999999999998876556999999999999999999988663 57899999986543 3467999
Q ss_pred EEecCCC----------------------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 94 IYLSTYV----------------------------PEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~----------------------------~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|+++.+. ..++..+.+.|+|||++++++++..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9987542 0145778899999999999887764
No 78
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.1e-12 Score=103.01 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
.+.+|||+|||.|.+++.+++.. |..+++.+|.+...++.|++++..++. .+..+...|...... ++||.|+
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~-----~~~~v~~s~~~~~v~--~kfd~Ii 229 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV-----ENTEVWASNLYEPVE--GKFDLII 229 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC-----CccEEEEeccccccc--ccccEEE
Confidence 44599999999999999999985 578999999999999999999998763 344566677654433 3899999
Q ss_pred ecCCCCc-----------hHHHHHhcCCCCeEEEEeec
Q psy14962 96 LSTYVPE-----------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 96 ~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~ 122 (216)
+++|++. ++....+.|++||.|.+...
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999964 45778899999999988765
No 79
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.48 E-value=8.3e-13 Score=98.45 Aligned_cols=106 Identities=19% Similarity=0.110 Sum_probs=79.1
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.+++.+. .+ ++.++||+|||.|..+..+|++ |..|+++|.|+..++.+++.....+ -+++....|....
T Consensus 21 ~v~~a~~-~~-~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 21 EVLEAVP-LL-KPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLNDF 89 (192)
T ss_dssp HHHHHCT-TS--SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCB
T ss_pred HHHHHHh-hc-CCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecchhc
Confidence 3444443 33 5679999999999999999998 6799999999999999988877755 3488899997654
Q ss_pred CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962 85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~ 122 (216)
.. .+.||+|++...+.. +.+.+.+.++|||++++.+.
T Consensus 90 ~~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 90 DF-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S--TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cc-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 44 357999998655533 45788899999999888543
No 80
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.47 E-value=1.1e-12 Score=107.56 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCCCcc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQAPFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 92 (216)
..+..+||||||+|..+..+|+.. |+..++|+|+++.++..+.+++...++ .|+.++.+|+... ..+++++|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL-----~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL-----KNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHhhhhCCCCcee
Confidence 346789999999999999999985 678999999999999999999887653 6899999998532 34567899
Q ss_pred EEEecCCCCc------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 93 AIYLSTYVPE------------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~~------------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.|+++.+.+| ++..+.++|+|||.+.+.+.+..
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 9999887653 57889999999999999877664
No 81
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.47 E-value=1.9e-12 Score=100.74 Aligned_cols=104 Identities=28% Similarity=0.384 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+. ..++.++..|........++||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEecccccCCCCCCCccEE
Confidence 4678999999999999999998864346999999999999999998765321 256889999987655445789999
Q ss_pred EecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962 95 YLSTYVPE------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~ 122 (216)
++...+++ ++..+.+.|+|||.+++...
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 98776643 56888999999999988644
No 82
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.47 E-value=2e-13 Score=108.62 Aligned_cols=106 Identities=27% Similarity=0.389 Sum_probs=77.8
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.+++.+.....+|.+|||+|||||.+++..++.. ..+|+++|++|..++.|++++..++++ .++.+. ... .
T Consensus 150 lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~--~~~-~ 220 (295)
T PF06325_consen 150 LCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGVE----DRIEVS--LSE-D 220 (295)
T ss_dssp HHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-T----TCEEES--CTS-C
T ss_pred HHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEE--Eec-c
Confidence 3455555556789999999999999999988873 238999999999999999999988752 344332 111 1
Q ss_pred CCCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962 85 LLHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~ 120 (216)
. ..++||+|+++-...- +...+.++|+|||+++++
T Consensus 221 ~-~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 221 L-VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp T-CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred c-ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 1 2378999998876543 456778999999999996
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.47 E-value=6.7e-13 Score=104.20 Aligned_cols=102 Identities=30% Similarity=0.388 Sum_probs=74.8
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
+++.+.....++.+|||+|||+|.++..+++. +. .+|+++|+|+.+++.|++++..+++ ..++.+..++
T Consensus 109 ~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~----- 177 (250)
T PRK00517 109 CLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD----- 177 (250)
T ss_pred HHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC-----
Confidence 34444434568899999999999999877765 32 3699999999999999999887542 1223322222
Q ss_pred CCCCCccEEEecCCCC---chHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVP---EIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~ 121 (216)
.+||+|+++.... .++..+.++|+|||+++++.
T Consensus 178 ---~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 178 ---LKADVIVANILANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred ---CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1699999876543 35578899999999999963
No 84
>PRK06922 hypothetical protein; Provisional
Probab=99.47 E-value=5.4e-13 Score=114.81 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 92 (216)
.++.+|||+|||+|..+..+++.. ++.+++|+|+|+.|++.|+++....+ .++.++++|..... ..+++||
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCCCCEE
Confidence 468899999999999998888875 56799999999999999998765432 46788889976533 3467899
Q ss_pred EEEecCCCCc-------------------hHHHHHhcCCCCeEEEEeec
Q psy14962 93 AIYLSTYVPE-------------------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 93 ~i~~~~~~~~-------------------~~~~~~~~L~~gG~lv~~~~ 122 (216)
+|+++..+++ +++++.++|||||.+++...
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9998765542 35788899999999999764
No 85
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.46 E-value=3.9e-13 Score=98.26 Aligned_cols=102 Identities=27% Similarity=0.387 Sum_probs=76.1
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
.+..+.....++.+|||+|||+|.++..+++. +.+++++|+++.+++. . +......+.....
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~ 73 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK------R---------NVVFDNFDAQDPP 73 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH------T---------TSEEEEEECHTHH
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh------h---------hhhhhhhhhhhhh
Confidence 33444333578899999999999999988665 3499999999999877 1 1223333222233
Q ss_pred CCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 86 LHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
...++||+|++...+++ +++.+.++|||||++++.++...
T Consensus 74 ~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 74 FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 34678999999999877 45899999999999999877653
No 86
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.46 E-value=1.8e-12 Score=106.94 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=83.7
Q ss_pred HHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-
Q psy14962 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL- 85 (216)
Q Consensus 7 ~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 85 (216)
++.+...+.++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.|++++...+ .++.++.+|+....
T Consensus 242 Ve~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g------~rV~fi~gDl~e~~l 314 (423)
T PRK14966 242 VEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG------ARVEFAHGSWFDTDM 314 (423)
T ss_pred HHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEcchhcccc
Confidence 33333334566799999999999999988764 45699999999999999999987754 47899999986432
Q ss_pred CCCCCccEEEecCCCC-------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 86 LHQAPFDAIYLSTYVP-------------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
...++||+|+++.|.- .+.+.+.+.|+|||.+++.....
T Consensus 315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD 384 (423)
T ss_pred ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc
Confidence 2245799999988751 12245567999999998866543
No 87
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.46 E-value=2.2e-12 Score=101.26 Aligned_cols=100 Identities=27% Similarity=0.288 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
.+.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...++ .++.++.+|+.... ..++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~-~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL-----DNVTFLQSDWFEPL-PGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhccC-cCCceeEEE
Confidence 45689999999999999999875 456999999999999999999887553 57899999986533 356899999
Q ss_pred ecCCCC--------------------------------chHHHHHhcCCCCeEEEEeec
Q psy14962 96 LSTYVP--------------------------------EIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 96 ~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~ 122 (216)
++.++. .+++.+.++|+|||.+++...
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 987642 124577789999999998643
No 88
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.46 E-value=2.3e-14 Score=96.56 Aligned_cols=91 Identities=26% Similarity=0.300 Sum_probs=58.7
Q ss_pred EEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCccEEEecC
Q psy14962 21 LDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPFDAIYLST 98 (216)
Q Consensus 21 ldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~i~~~~ 98 (216)
||+|||+|..+..+++.. +..+++++|+|+.+++.+++++.... ..+......+...... ..++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999999886 56799999999999988888887743 2333344433332221 125899999999
Q ss_pred CCCch------HHHHHhcCCCCeEE
Q psy14962 99 YVPEI------PYSILLQLKPGGRL 117 (216)
Q Consensus 99 ~~~~~------~~~~~~~L~~gG~l 117 (216)
.++++ +++++++|+|||.|
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 98774 58889999999986
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=99.44 E-value=1.5e-12 Score=97.82 Aligned_cols=103 Identities=23% Similarity=0.242 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.++.+|||+|||+|..+..+++. +.+++++|.++.+++.+++++...+.. ..++.++..|...... ..+||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~~~~-~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIR---NNGVEVIRSDLFEPFR-GDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCC---CcceEEEecccccccc-ccCceEE
Confidence 57889999999999999999887 359999999999999999988765421 1127888888765443 3479999
Q ss_pred EecCCCCc---------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 95 YLSTYVPE---------------------------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 95 ~~~~~~~~---------------------------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+++.++.. +++++.++|+|||.+++.....
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 98766421 4578889999999998876543
No 90
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.44 E-value=1.2e-13 Score=101.83 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=79.8
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCC
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAP 90 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 90 (216)
-++||.+|||+|||.|.+...+.+.. +.+.+|+|++++.+..+.++ .++++.+|..... .++++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQS 75 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCC
Confidence 46789999999999999998888763 56999999999988766543 4778999987544 45789
Q ss_pred ccEEEecCCCCchH---HHHHhcCCCCeEEEEeecCCC
Q psy14962 91 FDAIYLSTYVPEIP---YSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 91 ~D~i~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~~ 125 (216)
||.|+++..++.+. .-+.+.|+-|...+++.++..
T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 99999999987643 345566778889999988875
No 91
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.44 E-value=1.1e-12 Score=103.63 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCCCch----HHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHH----hCCC---------------
Q psy14962 15 QEGAKVLDIGSGSGF----MSCVFAELVGK----TGRVFGVEHMREQCEDAWETVMR----IRPD--------------- 67 (216)
Q Consensus 15 ~~~~~vldiG~G~G~----~~~~l~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~----~~~~--------------- 67 (216)
.++.+|+|+|||+|. +++.+++.... +.+|+|+|+|+.+++.|++..-. .++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 45555554431 46899999999999999875310 0000
Q ss_pred ---CCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962 68 ---LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 68 ---~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~ 121 (216)
.....++.|...|+.......++||+|+|...+.+ +++.+.+.|+|||++++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 00013688999998766555678999999887643 5578899999999999853
No 92
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=4.1e-12 Score=107.03 Aligned_cols=104 Identities=26% Similarity=0.344 Sum_probs=84.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPF 91 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 91 (216)
..+|.+|||+|||+|..+..+++..+ ++.|+++|.++.+++.+++++...+. ++.++++|+.... ...++|
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchhhcccCCC
Confidence 57899999999999999999998863 36999999999999999999988652 4688899986432 234679
Q ss_pred cEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 92 DAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 92 D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|.|+++.+.. .++..+.+.|||||++++++++.
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999877631 24567778999999999987655
No 93
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.44 E-value=1.5e-12 Score=104.93 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=67.6
Q ss_pred HHHHHHhccc-CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 4 ARIIELLEPK-IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 4 ~~~~~~l~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
..+++.+... ..++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.|+++....+.......++.+...|..
T Consensus 131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3344554321 125789999999999999999986 459999999999999999987653210011245788888864
Q ss_pred CCCCCCCCccEEEecCCCCch
Q psy14962 83 TGLLHQAPFDAIYLSTYVPEI 103 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~~ 103 (216)
.. .++||+|++...+.++
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHY 225 (315)
T ss_pred hc---CCCcCEEEEcCEEEec
Confidence 32 4679999998876553
No 94
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.44 E-value=1e-12 Score=100.32 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=75.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--------
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------- 85 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 85 (216)
++++.+|||+|||+|.++..+++..++.+.|+++|+++ + .. ..++.++++|+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~-------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DP-------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cC-------CCCcEEEecCCCChHHHHHHHHH
Confidence 57889999999999999999999876667999999988 1 01 245889999987532
Q ss_pred CCCCCccEEEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 86 LHQAPFDAIYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
...++||+|+++.... .++..+.++|+|||.+++.++...
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 3457899999976421 245788899999999999766554
No 95
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.43 E-value=4.6e-12 Score=99.34 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=76.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CCCccEE
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QAPFDAI 94 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i 94 (216)
+.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.|++++..+ +++++.+|+...... .++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~--------~~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADA--------GGTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc--------CCEEEEeechhhcchhcCCCEeEE
Confidence 4589999999999999998874 3468999999999999999998763 257888887643321 2579999
Q ss_pred EecCCCC--------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 95 YLSTYVP--------------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 95 ~~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+++.+.. .++..+.++|+|||.+++.....
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 9998752 12345568999999999875543
No 96
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=3.8e-12 Score=107.83 Aligned_cols=106 Identities=25% Similarity=0.276 Sum_probs=86.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCcc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFD 92 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D 92 (216)
+.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++...+. .++.++++|+..... -.++||
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCcccccchhcccCC
Confidence 56789999999999999999999875567999999999999999999988663 568999999865321 126799
Q ss_pred EEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 93 AIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 93 ~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+|+++.+.. .++..+.+.|||||.+++++.+.
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 999987621 14567789999999999876654
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=2.8e-12 Score=103.29 Aligned_cols=101 Identities=24% Similarity=0.192 Sum_probs=81.3
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS 97 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 97 (216)
.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++++...++ ..++.++++|+.... +.++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence 689999999999999999874 457999999999999999999987653 246999999976433 24579999998
Q ss_pred CCCC-------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 98 TYVP-------------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 98 ~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.|.. .++..+.+.|+|||.+++.....
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 6531 12467778999999999976544
No 98
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.43 E-value=5.1e-12 Score=97.31 Aligned_cols=102 Identities=26% Similarity=0.296 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.++.+|||+|||+|..+..+++..+...+++++|+++.++..++++... ..++++..+|........++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhcCCCCCCcEEEE
Confidence 4788999999999999999998864325899999999999999887641 257889999987655445789999
Q ss_pred EecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
++...+++ +++.+.+.|+|||++++....
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 98776644 568889999999999986543
No 99
>PLN03075 nicotianamine synthase; Provisional
Probab=99.42 E-value=6.3e-12 Score=99.55 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCchHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 16 EGAKVLDIGSGSGFMS-CVFAELVGKTGRVFGVEHMREQCEDAWETVMR-IRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~-~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
++.+|+|||||+|.++ ..+++...++++++++|.++++++.|++.+.. .++ ..+++|..+|+.......+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL----~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL----SKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc----cCCcEEEECchhhcccccCCcCE
Confidence 6789999999987554 44454445677999999999999999998854 443 36799999998764433467999
Q ss_pred EEecCCCC-------chHHHHHhcCCCCeEEEEeecC
Q psy14962 94 IYLSTYVP-------EIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 94 i~~~~~~~-------~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
|++..... .+++++.+.|+|||.+++-..+
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 99994221 2568999999999999997643
No 100
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.42 E-value=4.6e-12 Score=96.35 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=72.6
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.+.++.+|||+|||+|..+..+++.. ++.+++|+|+|+++++.|+++. .++.+..+|+.. +..+++||
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-~~~~~sfD 107 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-PFKDNFFD 107 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-CCCCCCEE
Confidence 35677899999999999999998874 3569999999999999998753 346778888766 44567899
Q ss_pred EEEecCCCCch--------HHHHHhcCCCCeEEEEeec
Q psy14962 93 AIYLSTYVPEI--------PYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 93 ~i~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~ 122 (216)
+|++...++++ ++++.+++ ++++++...
T Consensus 108 ~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 108 LVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred EEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 99998887653 24555554 445555443
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.41 E-value=7.5e-12 Score=100.05 Aligned_cols=101 Identities=24% Similarity=0.251 Sum_probs=80.9
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS 97 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 97 (216)
.+|||+|||+|.++..++... +..+|+++|+|+.+++.|++++...++ ..++.++.+|+.... ...+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~~~~d~~~~~-~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQL----EHRVEFIQSNLFEPL-AGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhccC-cCCCccEEEEC
Confidence 689999999999999999875 456999999999999999999887653 245899999986543 23479999998
Q ss_pred CCCC-------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 98 TYVP-------------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 98 ~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.+.. .++..+.++|+|||.+++.....
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 6541 12356678999999999977655
No 102
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.41 E-value=3.9e-12 Score=97.25 Aligned_cols=103 Identities=23% Similarity=0.230 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC----------CCCCCeEEEeccCCCC
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL----------LNDGRLHLRCRDGRTG 84 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~d~~~~ 84 (216)
.++.+|||+|||.|..+..+|.+ +.+|+|+|+|+.+++.+.+.. +... ....+++++++|+...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEccCCCC
Confidence 57789999999999999999987 669999999999999754321 1100 0124688999998754
Q ss_pred CCC-CCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962 85 LLH-QAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 85 ~~~-~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
... .++||.|+-...+.+ ....+.++|||||++++.+..
T Consensus 107 ~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 107 TAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 432 356999987665533 457889999999987776543
No 103
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.41 E-value=5.2e-12 Score=93.41 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=80.8
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+..+++.+. +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. ..+++++.+|+.
T Consensus 2 ~~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~ 69 (169)
T smart00650 2 IDKIVRAAN--LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDAL 69 (169)
T ss_pred HHHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchh
Confidence 456667664 567889999999999999999987 34999999999999999988754 257899999998
Q ss_pred CCCCCCCCccEEEecCCCCch---HHHHHhc--CCCCeEEEEe
Q psy14962 83 TGLLHQAPFDAIYLSTYVPEI---PYSILLQ--LKPGGRLVCG 120 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~~---~~~~~~~--L~~gG~lv~~ 120 (216)
.....+..||.|+++.+++.. +..+.+. +.++|.+++.
T Consensus 70 ~~~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 70 KFDLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence 665545569999999988643 2333322 3366777664
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.41 E-value=6.3e-12 Score=105.92 Aligned_cols=107 Identities=23% Similarity=0.270 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPF 91 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~ 91 (216)
..+|.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++.+.++ ..++.+..+|...... ..++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL----TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecccccccccccccccc
Confidence 56889999999999999999998875 56999999999999999999988663 1123335556542221 35679
Q ss_pred cEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 92 DAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 92 D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|.|+++.+.. .++..+.++|||||++++++++..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9999865421 145677899999999999887763
No 105
>PLN02476 O-methyltransferase
Probab=99.40 E-value=2.6e-12 Score=101.18 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=88.9
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
++..+. ...+..+|||+|+++|+.++++++..++++.++++|.+++..+.|++++.+.|+ .++++++.+|+....
T Consensus 109 lL~~L~-~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~li~GdA~e~L 183 (278)
T PLN02476 109 LLAMLV-QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNVKHGLAAESL 183 (278)
T ss_pred HHHHHH-HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHH
Confidence 334443 245678999999999999999999876677999999999999999999999886 368999999975422
Q ss_pred C------CCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962 86 L------HQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~------~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~ 120 (216)
. ..++||+|+.+..-.. .++.+.+.|+|||.+++.
T Consensus 184 ~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 184 KSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 1 1358999999988543 557888999999999884
No 106
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.40 E-value=8.1e-12 Score=100.97 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=81.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.++.+|||+|||+|.++..+++.. |+.+++++|. +.+++.+++++...++ .++++++.+|+.....+ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccCCCCC--CCCE
Confidence 4677899999999999999999985 5679999997 7899999998887664 36799999998753332 3699
Q ss_pred EEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962 94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~ 122 (216)
|++...++. +++++++.|+|||++++...
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 987776542 46788999999999999754
No 107
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.40 E-value=3.3e-12 Score=108.09 Aligned_cols=112 Identities=22% Similarity=0.260 Sum_probs=86.3
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+..+++.+. +.++.+|||+|||+|.++..+++.. .+|+|+|.|+.+++.|++++...+. .++.++.+|+.
T Consensus 286 ~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-----~~v~~~~~d~~ 355 (443)
T PRK13168 286 VARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL-----DNVTFYHANLE 355 (443)
T ss_pred HHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEeChH
Confidence 444555553 4678899999999999999999873 4999999999999999999887653 57999999986
Q ss_pred CCC----CCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 83 TGL----LHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 83 ~~~----~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
... ...++||+|+++.+... .++.+.+ ++|++.++++|.+..
T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~t 404 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPAT 404 (443)
T ss_pred HhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChHH
Confidence 432 12357999999988654 3344444 689999999986654
No 108
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.38 E-value=4.6e-12 Score=96.12 Aligned_cols=111 Identities=26% Similarity=0.417 Sum_probs=89.5
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRT 83 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~ 83 (216)
.++..+. ......+|||+|++.|+.+++++......++++.+|.++++.+.|++++++.+.+ +++.++. +|...
T Consensus 49 ~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~gdal~ 123 (219)
T COG4122 49 ALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLGGDALD 123 (219)
T ss_pred HHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEecCcHHH
Confidence 3444444 2457789999999999999999999865679999999999999999999998863 5577888 47654
Q ss_pred CCC--CCCCccEEEecCCC---CchHHHHHhcCCCCeEEEEe
Q psy14962 84 GLL--HQAPFDAIYLSTYV---PEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 84 ~~~--~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~lv~~ 120 (216)
... ..++||+||.+..- +..++.+.+.|+|||.+++.
T Consensus 124 ~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 124 VLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 333 25789999998774 44678888999999999984
No 109
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.38 E-value=9.5e-13 Score=99.75 Aligned_cols=110 Identities=23% Similarity=0.363 Sum_probs=87.0
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
++..+.. .....+||||||++|+.++.+++.++++++++.+|.+++..+.|++.+.+.|+ .++++++.+|+....
T Consensus 36 lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~~~l 110 (205)
T PF01596_consen 36 LLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDALEVL 110 (205)
T ss_dssp HHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HHHHH
T ss_pred HHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccHhhH
Confidence 3444432 34567999999999999999999887778999999999999999999998775 368999999975321
Q ss_pred C------CCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962 86 L------HQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~------~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~ 120 (216)
. ..++||+|+.+..-.. .++.+.++|+|||.+++.
T Consensus 111 ~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 111 PELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 1 1358999999988654 456778999999999985
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=1.8e-11 Score=97.50 Aligned_cols=102 Identities=26% Similarity=0.273 Sum_probs=80.0
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.. . ...++.++.+|...... .++||+
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~-~----~~~~i~~~~~d~~~~~~-~~~fD~ 178 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKH-G----LGARVEFLQGDWFEPLP-GGRFDL 178 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-C----CCCcEEEEEccccCcCC-CCceeE
Confidence 3567899999999999999999885 456999999999999999998872 1 13579999999854332 468999
Q ss_pred EEecCCCCc--------------------------------hHHHHHhcCCCCeEEEEeec
Q psy14962 94 IYLSTYVPE--------------------------------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 94 i~~~~~~~~--------------------------------~~~~~~~~L~~gG~lv~~~~ 122 (216)
|+++.+... ++..+.++|+|||++++...
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 999876421 23455689999999998654
No 111
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.37 E-value=8.6e-12 Score=106.69 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=78.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCCCCCCcc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLLHQAPFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D 92 (216)
.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++.... ..++.++++|+.. ...+.++||
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGH-------YKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEecccccccCCCCCCEE
Confidence 357799999999999999999873 4899999999999887653221 2578899999853 223457899
Q ss_pred EEEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962 93 AIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 93 ~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
+|++..++++ ++..+.++|+|||++++....
T Consensus 106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999887654 457888999999999986543
No 112
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.37 E-value=9.2e-12 Score=100.96 Aligned_cols=110 Identities=14% Similarity=0.070 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i 94 (216)
++.+|||+|||+|.++..+++. +.+|+|+|.++.+++.|++++...++ .+++++.+|+..... ..+.||+|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-----~~v~~~~~D~~~~~~~~~~~~D~V 244 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-----TNVQFQALDSTQFATAQGEVPDLV 244 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEcCHHHHHHhcCCCCeEE
Confidence 5689999999999999999986 35999999999999999999988653 579999999864322 23469999
Q ss_pred EecCCCCchH---HHHHhcCCCCeEEEEeecCCCCcceEEEE
Q psy14962 95 YLSTYVPEIP---YSILLQLKPGGRLVCGVGKSKSYHRMTVI 133 (216)
Q Consensus 95 ~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~~~~~~~~~~ 133 (216)
+++.+-..+. ......++|++.++++|.+......+..+
T Consensus 245 v~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 245 LVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred EECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 9998865432 23344567888888888776544444333
No 113
>PRK00811 spermidine synthase; Provisional
Probab=99.36 E-value=1e-11 Score=99.11 Aligned_cols=109 Identities=23% Similarity=0.213 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 93 (216)
..+.+||++|||+|..+..++++.+ ..+|+++|+++.+++.|++.+...........+++++.+|+..... ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 3567999999999999999987632 3589999999999999999876432111124678999999864332 3568999
Q ss_pred EEecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|+++...+ .+++.+++.|+|||.+++...++
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 99976432 24578899999999999876554
No 114
>PRK06202 hypothetical protein; Provisional
Probab=99.35 E-value=1.1e-11 Score=96.39 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELV---GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF 91 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 91 (216)
.++.+|||+|||+|.++..+++.. +++.+++|+|+++++++.|+++... .++.+...+.......+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 466799999999999998887643 3446999999999999999887543 34566666544333345789
Q ss_pred cEEEecCCCCch--------HHHHHhcCCCCeEEEEee
Q psy14962 92 DAIYLSTYVPEI--------PYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 92 D~i~~~~~~~~~--------~~~~~~~L~~gG~lv~~~ 121 (216)
|+|+++..++++ ++++.++++ |.+++..
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 999999888663 456667776 4555543
No 115
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.35 E-value=3.4e-12 Score=94.38 Aligned_cols=96 Identities=22% Similarity=0.241 Sum_probs=73.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
.-.+++|+|||.|.++..++.+. ..++++|+++..++.|++++.. ..++.+...|+.... +.++||+|+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~-P~~~FDLIV 111 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFW-PEGRFDLIV 111 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCC-CCCCeeEEE
Confidence 34689999999999999999984 3899999999999999999876 368999999986544 467899999
Q ss_pred ecCCCCc---------hHHHHHhcCCCCeEEEEeec
Q psy14962 96 LSTYVPE---------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 96 ~~~~~~~---------~~~~~~~~L~~gG~lv~~~~ 122 (216)
++..+.. +...+...|+|||.+|+...
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9887644 34677789999999999643
No 116
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.35 E-value=2.1e-11 Score=92.02 Aligned_cols=111 Identities=12% Similarity=0.111 Sum_probs=81.5
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
++..+. ...++.+|||+|||+|.++..++... ..+|+++|.++.+++.+++++...+. .++.++.+|+....
T Consensus 44 l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~~D~~~~l 115 (199)
T PRK10909 44 LFNWLA-PVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-----GNARVVNTNALSFL 115 (199)
T ss_pred HHHHHh-hhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEchHHHHH
Confidence 344443 22467899999999999998765543 35999999999999999999988663 57899999976433
Q ss_pred C-CCCCccEEEecCCCCc-hH----HHHHh--cCCCCeEEEEeecCC
Q psy14962 86 L-HQAPFDAIYLSTYVPE-IP----YSILL--QLKPGGRLVCGVGKS 124 (216)
Q Consensus 86 ~-~~~~~D~i~~~~~~~~-~~----~~~~~--~L~~gG~lv~~~~~~ 124 (216)
. ...+||+|++++|+.. +. ..+.+ +|+|++.+++.+...
T Consensus 116 ~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred hhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 2 2346999999999643 22 33333 378899999887654
No 117
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.35 E-value=1.3e-11 Score=92.90 Aligned_cols=96 Identities=25% Similarity=0.218 Sum_probs=72.5
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------- 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 85 (216)
.+.++.+|||+|||+|.++..+++...+..+++++|+++.+ . ..++.++..|.....
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHH
Confidence 35789999999999999999998886555689999999864 1 145778888875422
Q ss_pred -CCCCCccEEEecCCC-----------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962 86 -LHQAPFDAIYLSTYV-----------------PEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 86 -~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
...++||+|+++... ..++..+.++|+|||++++.....
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 234579999986431 125577889999999999965444
No 118
>KOG4300|consensus
Probab=99.35 E-value=3.7e-12 Score=94.11 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=77.1
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeE-EEeccCCCCC-CCCCCccEEE
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH-LRCRDGRTGL-LHQAPFDAIY 95 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~i~ 95 (216)
..|||+|||||.--...-.. |..+|+++|+++.|.+++.+.+++.. ..++. |++++.+..+ .+++++|+|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhcCcccccCCeeeEE
Confidence 35799999999874443322 56699999999999999999887743 35565 8899988665 4678999999
Q ss_pred ecCCCCc------hHHHHHhcCCCCeEEEEee
Q psy14962 96 LSTYVPE------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 96 ~~~~~~~------~~~~~~~~L~~gG~lv~~~ 121 (216)
+...+-. .+.++.++|||||++++..
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 8877633 6789999999999999864
No 119
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.1e-11 Score=96.98 Aligned_cols=98 Identities=27% Similarity=0.268 Sum_probs=78.7
Q ss_pred eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecC
Q psy14962 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST 98 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 98 (216)
+|||+|||||.+++.+++.. +...|+++|+|+..++.|++++..+++ .++.++..|...... ++||+|++++
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l-----~~~~~~~~dlf~~~~--~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL-----VRVLVVQSDLFEPLR--GKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC-----ccEEEEeeecccccC--CceeEEEeCC
Confidence 79999999999999999985 457999999999999999999998763 556666667654443 3899999998
Q ss_pred CC---C----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 99 YV---P----------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 99 ~~---~----------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|. . .++..+.+.|+|||.+++.....
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~ 241 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT 241 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence 85 1 02356778999999999976643
No 120
>KOG1541|consensus
Probab=99.33 E-value=1.1e-11 Score=92.44 Aligned_cols=111 Identities=25% Similarity=0.264 Sum_probs=83.6
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
|.++.++++...-.....|||||||+|..+..+... +...+|+|+|+.|++.|.+.--. -+++.+|+
T Consensus 36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~e----------gdlil~DM 102 (270)
T KOG1541|consen 36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELE----------GDLILCDM 102 (270)
T ss_pred HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhh----------cCeeeeec
Confidence 566777777622223678999999999998877755 45899999999999999874222 35788887
Q ss_pred CCC-CCCCCCccEEEecCCCCch-----------------HHHHHhcCCCCeEEEEeecCCC
Q psy14962 82 RTG-LLHQAPFDAIYLSTYVPEI-----------------PYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 82 ~~~-~~~~~~~D~i~~~~~~~~~-----------------~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
-.. +...++||.+|+...++++ +..++.+|++|++.+++.....
T Consensus 103 G~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 103 GEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 543 3467899999987776542 3568899999999999876553
No 121
>PRK04457 spermidine synthase; Provisional
Probab=99.33 E-value=1.7e-11 Score=96.79 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 93 (216)
.++.+|||+|||+|.++..+++.. ++.+++++|+++++++.|++.+...+ ..++++++.+|+..... ..++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHhCCCCCCE
Confidence 456799999999999999998875 56799999999999999998875422 13678999999753322 2357999
Q ss_pred EEecCCC----------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYV----------PEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|+++..- ..+++.+.+.|+|||++++.....
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 9986421 236688999999999999965543
No 122
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.32 E-value=2.1e-11 Score=104.49 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
++.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.|++++...++ ..++.++.+|+.... ..++||+|+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~~~-~~~~fDlIv 211 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFENI-EKQKFDFIV 211 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhhhC-cCCCccEEE
Confidence 34689999999999999998875 457999999999999999999887553 257889999975433 245799999
Q ss_pred ecCCCCc--------------------------------hHHHHHhcCCCCeEEEEeecC
Q psy14962 96 LSTYVPE--------------------------------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 96 ~~~~~~~--------------------------------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
++.+.-. ++..+.++|+|||.+++....
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 9876310 224666899999999986543
No 123
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.32 E-value=3.7e-11 Score=93.40 Aligned_cols=101 Identities=23% Similarity=0.283 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCcc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFD 92 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 92 (216)
..++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++....+ .++.+...+..... ...++||
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~fD 116 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAEHPGQFD 116 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhhcCCCcc
Confidence 346889999999999999888876 3589999999999999998876643 35677777765332 2346899
Q ss_pred EEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 93 AIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 93 ~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
+|++...+++ +++.+.+.|+|||.+++....
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 9999776644 568889999999999987554
No 124
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.30 E-value=4e-11 Score=92.02 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC----------CCCCCeEEEeccCCC
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL----------LNDGRLHLRCRDGRT 83 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~d~~~ 83 (216)
+.++.+|||+|||.|..+..+|.+ +.+|+|+|+|+.+++.+.+ +.++.. ....++++.++|+..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccC
Confidence 356789999999999999999987 6799999999999987643 111100 012568889999875
Q ss_pred CCCC-CCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962 84 GLLH-QAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 84 ~~~~-~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~ 120 (216)
.... .+.||.|+-...+.+ ....+.++|+|||++++.
T Consensus 109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5332 257999986655433 457889999999975553
No 125
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.29 E-value=3.6e-11 Score=92.87 Aligned_cols=100 Identities=25% Similarity=0.302 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i 94 (216)
.+.+|||+|||+|..+..+++. +..++++|+++.++..+++++...+ ..++++...|....... .++||+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHHhhcCCCCCccEE
Confidence 4789999999999999988875 3479999999999999999887643 13578888887543322 3689999
Q ss_pred EecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962 95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
++...+++ ++..+.+.|+|||.+++....
T Consensus 117 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 117 TCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred EehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99776543 568889999999999887554
No 126
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.29 E-value=2.3e-11 Score=94.66 Aligned_cols=110 Identities=15% Similarity=0.250 Sum_probs=88.2
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
++..+.. .....+|||+|+++|+.++++++..+++++++++|.+++..+.|++.+.+.|+ .++++++.+|+....
T Consensus 70 lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G~a~e~L 144 (247)
T PLN02589 70 FLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeccHHHHH
Confidence 3444432 34567999999999999999999877778999999999999999999999775 378999999875432
Q ss_pred CC-------CCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962 86 LH-------QAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~-------~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~ 120 (216)
.. .++||+|+.+..-.. .++.+.+.|+|||.+++.
T Consensus 145 ~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 11 258999999988543 457778999999999884
No 127
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.29 E-value=2.5e-11 Score=100.84 Aligned_cols=106 Identities=20% Similarity=0.102 Sum_probs=80.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCC
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQA 89 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~ 89 (216)
..++.+|||+|||+|.+++.++.. ...+|+++|.++.+++.|++++..+++ ...+++++.+|+..... ..+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcEEEEEccHHHHHHHHHhcCC
Confidence 346889999999999998876643 234999999999999999999988763 12478999999864321 245
Q ss_pred CccEEEecCCCCc---------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 90 PFDAIYLSTYVPE---------------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 90 ~~D~i~~~~~~~~---------------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+||+|++++|.-. +.....++|+|||.++...++.
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 7999999988511 2235678999999998765543
No 128
>KOG1271|consensus
Probab=99.28 E-value=6.4e-11 Score=85.91 Aligned_cols=104 Identities=23% Similarity=0.237 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE-
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY- 95 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~- 95 (216)
..+|||+|||+|.+...+++.. -....+|+|.|+++++.|+..+.+.+. .+.++|...|........++||+|.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~----~n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGF----SNEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCC----CcceeEEEeeccCCcccccceeEEee
Confidence 3499999999999999998873 334699999999999999888887764 2449999999876443345566654
Q ss_pred --------ecCCCC-----chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 96 --------LSTYVP-----EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 96 --------~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.+.... -.+..+.+.|+|||++++..++..
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 332211 145788899999999999877663
No 129
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.26 E-value=1.4e-10 Score=89.89 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.++.+|||+|||+|..+..+++. +..|+++|+++.+++.|+++....+. ..++.+..+|... ..++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~---~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLES---LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCchh---ccCCcCEE
Confidence 46789999999999999999876 34799999999999999998876442 1478888888432 24679999
Q ss_pred EecCCCCc
Q psy14962 95 YLSTYVPE 102 (216)
Q Consensus 95 ~~~~~~~~ 102 (216)
++...+.+
T Consensus 132 ~~~~~l~~ 139 (230)
T PRK07580 132 VCLDVLIH 139 (230)
T ss_pred EEcchhhc
Confidence 99877644
No 130
>PLN02366 spermidine synthase
Probab=99.26 E-value=1e-10 Score=94.02 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCcc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D 92 (216)
.+..+||++|||.|.....++++. +..+|+.+|+++.+++.+++.+...+. .+...+++++.+|+..... ..++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 456899999999999999998872 235899999999999999998765321 1234689999999753321 246799
Q ss_pred EEEecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 93 AIYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 93 ~i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+|+++...+ .+.+.+++.|+|||.++....++
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~ 209 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESM 209 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCc
Confidence 999986543 24678999999999998865543
No 131
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.26 E-value=6.4e-11 Score=89.35 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=81.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---CCCCCCccE
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---LLHQAPFDA 93 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~ 93 (216)
...+||||||.|.+...+|+.. |+..++|+|+....+..+.+++...+ ..|+.++.+|+... ..+++++|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHHhhcccCCchhe
Confidence 3378999999999999999984 68899999999999999999988876 48999999998742 234678999
Q ss_pred EEecCCCCc--------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 94 IYLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|+...+-++ ++..+.++|+|||.+.+.+....
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 999888654 56888999999999999887764
No 132
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.25 E-value=5e-11 Score=90.11 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=71.4
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCC
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAP 90 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 90 (216)
.+.++.+|||+|||+|.++..+++.. ...++++|+++++++.+++ .++.++.+|+.... ..+++
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~------------~~~~~~~~d~~~~l~~~~~~s 75 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA------------RGVNVIQGDLDEGLEAFPDKS 75 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH------------cCCeEEEEEhhhcccccCCCC
Confidence 45678899999999999998887663 3478999999999988753 24677888875422 34578
Q ss_pred ccEEEecCCCCch---HHHHHhcCCCCeEEEEeecCC
Q psy14962 91 FDAIYLSTYVPEI---PYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 91 ~D~i~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~ 124 (216)
||+|+++.+++++ ...+.+++++++.+++..++.
T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~~ 112 (194)
T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPNF 112 (194)
T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCCh
Confidence 9999999887664 234445566667766665443
No 133
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.24 E-value=6e-11 Score=105.53 Aligned_cols=105 Identities=20% Similarity=0.116 Sum_probs=82.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~ 93 (216)
.+|.+|||+|||+|.+++.+++. + ..+|+++|.|+.+++.|++++..+++ ...+++++.+|+..... ..++||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGL---SGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCC---CccceEEEEccHHHHHHHcCCCcCE
Confidence 46889999999999999999986 2 23799999999999999999988763 12478999999754221 1457999
Q ss_pred EEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|+++.+.- .+...+.++|+|||.+++.+...
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 99998741 13467778999999998876544
No 134
>PRK01581 speE spermidine synthase; Validated
Probab=99.23 E-value=1.1e-10 Score=94.77 Aligned_cols=109 Identities=19% Similarity=0.217 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHhCCCCCCCCCeEEEeccCCCCCC-CCCCc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET--VMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPF 91 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 91 (216)
....+||++|||+|..+..+++.. +..+|+++|+++++++.|++. +....-..+..++++++.+|+..... ..++|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 345699999999999988888763 345999999999999999962 21110001234789999999874332 34679
Q ss_pred cEEEecCCCC-----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 92 DAIYLSTYVP-----------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 92 D~i~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|+|+++.+-+ .+.+.+++.|+|||++++...++
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 9999986532 14578999999999999876555
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.23 E-value=1e-10 Score=92.85 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i 94 (216)
.+.+||++|||+|..+..+++.. +..+++++|+++++++.+++.+..... .....+++++.+|+..... ..++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHHHHHhCCCCccEE
Confidence 34599999999999998888763 235899999999999999998755321 1223578888888753221 24689999
Q ss_pred EecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 95 YLSTYVP----------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 95 ~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+++...+ .+++.+.+.|+|||.+++...++
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 9977632 24578899999999999975544
No 136
>KOG2915|consensus
Probab=99.22 E-value=3.2e-10 Score=87.26 Aligned_cols=108 Identities=28% Similarity=0.330 Sum_probs=91.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
++.|+.+|. +.||++|||-|+|+|.++..+++.++|.++++.+|..+...+.|.+.++.++. .+++.+.+-|+.
T Consensus 94 ia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi----~~~vt~~hrDVc 167 (314)
T KOG2915|consen 94 IAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI----GDNVTVTHRDVC 167 (314)
T ss_pred HHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----CcceEEEEeecc
Confidence 456677775 89999999999999999999999999999999999999999999999999885 689999999986
Q ss_pred CCC--CCCCCccEEEecCCCCc-hHHHHHhcCCCCeE
Q psy14962 83 TGL--LHQAPFDAIYLSTYVPE-IPYSILLQLKPGGR 116 (216)
Q Consensus 83 ~~~--~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~ 116 (216)
..- .++..+|.|+.+.+.+| ....+.+.||.+|.
T Consensus 168 ~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 168 GSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred cCCccccccccceEEEcCCChhhhhhhhHHHhhhcCc
Confidence 332 23678999999999887 34566678888775
No 137
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.22 E-value=6.5e-11 Score=98.10 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i 94 (216)
++.+|||++||+|.++..++.. +.+|+++|.++.+++.|++++...+ ..++.++.+|+..... ...+||+|
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~v 304 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLG-----LDNLSFAALDSAKFATAQMSAPELV 304 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHHHHhcCCCCCEE
Confidence 5679999999999999999865 3589999999999999999998865 3589999999864322 12459999
Q ss_pred EecCCCCch----HHHHHhcCCCCeEEEEeecCCCC
Q psy14962 95 YLSTYVPEI----PYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 95 ~~~~~~~~~----~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
+++.+...+ ++.+ ..++|++.+++++.+...
T Consensus 305 i~DPPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~Tl 339 (374)
T TIGR02085 305 LVNPPRRGIGKELCDYL-SQMAPKFILYSSCNAQTM 339 (374)
T ss_pred EECCCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHH
Confidence 999997543 2333 357899999998876543
No 138
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.22 E-value=1.2e-10 Score=98.47 Aligned_cols=109 Identities=22% Similarity=0.214 Sum_probs=82.5
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT 83 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (216)
..+.+.+. +.++.+|||+|||+|.++..+++.. .+|+++|.++.+++.|++++..+++ .++.++.+|+..
T Consensus 282 ~~~~~~l~--~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~d~~~ 351 (431)
T TIGR00479 282 DRALEALE--LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAGTLET 351 (431)
T ss_pred HHHHHHhc--cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeCCHHH
Confidence 34444442 4567899999999999999999873 4899999999999999999988663 689999999853
Q ss_pred CC----CCCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeecC
Q psy14962 84 GL----LHQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 84 ~~----~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~ 123 (216)
.. ...++||+|+++.+-.. +++.+. .++|++.++++|..
T Consensus 352 ~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~p 398 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCNP 398 (431)
T ss_pred HHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCCH
Confidence 21 12356999999888533 334433 48899988887653
No 139
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.21 E-value=3e-11 Score=92.94 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
...++||||+|.|..+..++..+. +|++.|.|+.|....+++ ..+++..+- ....+.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~k------------g~~vl~~~~--w~~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKK------------GFTVLDIDD--WQQTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhC------------CCeEEehhh--hhccCCceEEEe
Confidence 346799999999999999999864 899999999997655442 234443331 112345799999
Q ss_pred ecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 96 LSTYVPE------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 96 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|-+.+.. +++.+++.|+|+|++++.+--|
T Consensus 157 cLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 157 CLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred ehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 9888743 6799999999999999976555
No 140
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.21 E-value=3.4e-10 Score=95.76 Aligned_cols=107 Identities=25% Similarity=0.290 Sum_probs=87.9
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPF 91 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 91 (216)
..++|.+|||+|||+|.-+..++..++..+.+++.|+++..++..++++.+.| ..++.+...|..... ...+.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhhhhhhchhhc
Confidence 35789999999999999999999988766799999999999999999999966 477888888876432 123579
Q ss_pred cEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962 92 DAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 92 D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|.|+++.+-. .++....+.|||||+++.++++.
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 9999887731 13467778999999999998874
No 141
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=87.74 Aligned_cols=103 Identities=24% Similarity=0.313 Sum_probs=87.5
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CCCCCCCccEE
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GLLHQAPFDAI 94 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~i 94 (216)
..+||||||.|.....+|+. +|...++|+|+....+..|.+.+.+.++ +|+.+++.|+.. ...++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l-----~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL-----KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC-----CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 57999999999999999998 5788999999999999999999988663 599999999863 33455699999
Q ss_pred EecCCCCc--------------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 95 YLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 95 ~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
+.+.+-+| +++.+.+.|+|||.+.+.+.+...
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 99888654 568889999999999998877643
No 142
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.20 E-value=2.7e-10 Score=76.18 Aligned_cols=95 Identities=25% Similarity=0.270 Sum_probs=74.4
Q ss_pred eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEEEec
Q psy14962 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAIYLS 97 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~ 97 (216)
+|+|+|||+|..+..+++. ...+++++|.++..+..+++..... ...++++...|...... ..+++|+|+++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcc-----cccceEEEEcChhhhccccCCceEEEEEc
Confidence 5899999999999888873 3569999999999999887533221 13678888888875443 35679999999
Q ss_pred CCCCc-------hHHHHHhcCCCCeEEEEe
Q psy14962 98 TYVPE-------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 98 ~~~~~-------~~~~~~~~L~~gG~lv~~ 120 (216)
.++.. +++.+.+.++|||.+++.
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 88754 457888999999999885
No 143
>PRK03612 spermidine synthase; Provisional
Probab=99.19 E-value=1.3e-10 Score=100.21 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHhCCCCCCCCCeEEEeccCCCCCC-CCCCc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET--VMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPF 91 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 91 (216)
+++++|||+|||+|..+..++++ ++..+++++|+++++++.++++ +...+...+..++++++.+|+..... ..++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999999876 2225999999999999999983 32211001223678999999874322 24689
Q ss_pred cEEEecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 92 DAIYLSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 92 D~i~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|+|+++.+.+. +.+.+++.|+|||.+++...++
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99999876432 4578899999999999976555
No 144
>PHA03412 putative methyltransferase; Provisional
Probab=99.19 E-value=2.6e-10 Score=87.28 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVG--KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
.+.+|||+|||+|.++..+++... +...|+++|+++.+++.|+++. .++.++..|+..... .++||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------~~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------PEATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------cCCEEEEcchhcccc-cCCccE
Confidence 467999999999999999987642 2458999999999999999764 347889999864332 458999
Q ss_pred EEecCCCC
Q psy14962 94 IYLSTYVP 101 (216)
Q Consensus 94 i~~~~~~~ 101 (216)
|+++.|+.
T Consensus 118 IIsNPPY~ 125 (241)
T PHA03412 118 AISNPPFG 125 (241)
T ss_pred EEECCCCC
Confidence 99999973
No 145
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.18 E-value=2.6e-10 Score=91.39 Aligned_cols=110 Identities=24% Similarity=0.174 Sum_probs=88.4
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCC
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGR 82 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~ 82 (216)
++++-.++ .+.+|..|||--||||.+.+++... +++++|+|++..|+.-|+.++..-+ .....+... |+.
T Consensus 186 AR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~~~~Da~ 256 (347)
T COG1041 186 ARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYG-----IEDYPVLKVLDAT 256 (347)
T ss_pred HHHHHHHh-ccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhC-----cCceeEEEecccc
Confidence 34444444 5789999999999999999998776 5699999999999999999998854 345555555 888
Q ss_pred CCCCCCCCccEEEecCCCCc---------------hHHHHHhcCCCCeEEEEeec
Q psy14962 83 TGLLHQAPFDAIYLSTYVPE---------------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~---------------~~~~~~~~L~~gG~lv~~~~ 122 (216)
..+..+.++|.|+++++... +++.++++|++||++++..+
T Consensus 257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 76666668999999999622 45788899999999999766
No 146
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=94.92 Aligned_cols=104 Identities=25% Similarity=0.168 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCC
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAP 90 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~ 90 (216)
.|++||++.|=||.+++.+|.. ++ +|+++|.|...++.|++++.-+++ ...++.++++|+..... .+.+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHHHHHhcCCc
Confidence 3999999999999999999876 34 999999999999999999998874 35678999999864332 3458
Q ss_pred ccEEEecCCC---------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 91 FDAIYLSTYV---------------PEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 91 ~D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
||+|++++|- ..+...+.++|+|||+++++.++..
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999884 1245788899999999999877663
No 147
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.17 E-value=1.8e-10 Score=93.43 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-----CCCCCeEEEeccCCCC-----C
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL-----LNDGRLHLRCRDGRTG-----L 85 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~d~~~~-----~ 85 (216)
++.+|||+|||-|....-.... + -..++|+|++...++.|+++.....-.. ...-...++.+|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999998887666554 2 3499999999999999999983311000 0012456778876521 1
Q ss_pred CC-CCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 86 LH-QAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 86 ~~-~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.. ..+||+|-|...+|. ++.++.+.|+|||+|+.+++...
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 22 258999999988876 45889999999999999998874
No 148
>PHA03411 putative methyltransferase; Provisional
Probab=99.15 E-value=9.7e-10 Score=86.05 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
..+.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.++++. .++.++.+|+.... ...+||+|
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~-~~~kFDlI 130 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFE-SNEKFDVV 130 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhc-ccCCCcEE
Confidence 3457999999999999988887642 359999999999999988753 35789999987543 34679999
Q ss_pred EecCCCCc--------------------------hHHHHHhcCCCCeEEEEe
Q psy14962 95 YLSTYVPE--------------------------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 95 ~~~~~~~~--------------------------~~~~~~~~L~~gG~lv~~ 120 (216)
+++.++.. .+.....+|+|+|.+.+.
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 99988743 113445788888877665
No 149
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.14 E-value=6.9e-10 Score=85.11 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------H-hCCCCCCCCCeEEEeccCCCCCC-
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM------R-IRPDLLNDGRLHLRCRDGRTGLL- 86 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~------~-~~~~~~~~~~~~~~~~d~~~~~~- 86 (216)
.++.+||+.|||.|....+++.. +.+|+|+|+|+..++.+.+... . .........++++.++|+.....
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 46789999999999999999987 5699999999999988755210 0 00000123578999999876532
Q ss_pred --CCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962 87 --HQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 87 --~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~ 122 (216)
..+.||+|+-...+.. ..+.+.++|+|||.+++.+.
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 1267999987766644 34688899999999988654
No 150
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=9.9e-10 Score=80.53 Aligned_cols=76 Identities=28% Similarity=0.370 Sum_probs=63.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
-.|.+|+|+|||||.+++..+-. |+ ..|+++|+++++++.++++..+. ..++.++++|+... .+.+|.+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~---~~~~dtv 112 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDF---RGKFDTV 112 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhc---CCccceE
Confidence 35788999999999999988766 32 49999999999999999998873 37899999998654 3568999
Q ss_pred EecCCCC
Q psy14962 95 YLSTYVP 101 (216)
Q Consensus 95 ~~~~~~~ 101 (216)
+.+.++.
T Consensus 113 imNPPFG 119 (198)
T COG2263 113 IMNPPFG 119 (198)
T ss_pred EECCCCc
Confidence 9999984
No 151
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.12 E-value=1.2e-09 Score=86.13 Aligned_cols=96 Identities=22% Similarity=0.246 Sum_probs=72.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+..+++.+. +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. ..++.++++|+.
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~ 85 (258)
T PRK14896 18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDAL 85 (258)
T ss_pred HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccc
Confidence 345555543 567899999999999999999988 24899999999999999987754 257999999987
Q ss_pred CCCCCCCCccEEEecCCCCchHHHHHhcCC
Q psy14962 83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLK 112 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~ 112 (216)
.... ..||.|+++.++......+.+.++
T Consensus 86 ~~~~--~~~d~Vv~NlPy~i~s~~~~~l~~ 113 (258)
T PRK14896 86 KVDL--PEFNKVVSNLPYQISSPITFKLLK 113 (258)
T ss_pred cCCc--hhceEEEEcCCcccCcHHHHHHHh
Confidence 5433 248999999887643333333343
No 152
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.12 E-value=5.9e-10 Score=88.60 Aligned_cols=96 Identities=21% Similarity=0.141 Sum_probs=71.5
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+..+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. .++.++.+|+.
T Consensus 31 ~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~ 97 (272)
T PRK00274 31 LDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE--------DNLTIIEGDAL 97 (272)
T ss_pred HHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc--------CceEEEEChhh
Confidence 344555553 5678899999999999999999883 3899999999999999876532 57999999987
Q ss_pred CCCCCCCCccEEEecCCCCchHHHHHhcC
Q psy14962 83 TGLLHQAPFDAIYLSTYVPEIPYSILLQL 111 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L 111 (216)
.....+-.++.|+++.++.....-+.++|
T Consensus 98 ~~~~~~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 98 KVDLSELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred cCCHHHcCcceEEEeCCccchHHHHHHHH
Confidence 54432211588999888755444444444
No 153
>KOG2904|consensus
Probab=99.12 E-value=1.8e-09 Score=83.26 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC----C-CCCCC
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG----L-LHQAP 90 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~-~~~~~ 90 (216)
.+..+||+|||+|.++..++..++ ...|+++|.|+.++..|.+++.+..+ .+++.+++.+++.. . ...++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKL----SGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhh----cCceEEEecccccccccccccccCc
Confidence 456899999999999999999886 57999999999999999999988765 36777776655422 1 23478
Q ss_pred ccEEEecCCCCc--------------------------------hHHHHHhcCCCCeEEEEeec
Q psy14962 91 FDAIYLSTYVPE--------------------------------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 91 ~D~i~~~~~~~~--------------------------------~~~~~~~~L~~gG~lv~~~~ 122 (216)
+|+++++.+.-. +..-..+.|+|||.+.+...
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 999999988510 12455589999999998765
No 154
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.10 E-value=9.1e-10 Score=88.11 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=74.5
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+..+++.+. +.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...+. ..++.++.+|+.
T Consensus 25 ~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~----~~~v~ii~~Dal 95 (294)
T PTZ00338 25 LDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPL----ASKLEVIEGDAL 95 (294)
T ss_pred HHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECCHh
Confidence 445555553 578899999999999999999887 34899999999999999998876431 267999999986
Q ss_pred CCCCCCCCccEEEecCCCCchHHHHHhcC
Q psy14962 83 TGLLHQAPFDAIYLSTYVPEIPYSILLQL 111 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L 111 (216)
.... ..||.|+++.++......+.++|
T Consensus 96 ~~~~--~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 96 KTEF--PYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred hhcc--cccCEEEecCCcccCcHHHHHHH
Confidence 5432 35899999988765433344444
No 155
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.10 E-value=1.9e-09 Score=80.34 Aligned_cols=102 Identities=20% Similarity=0.159 Sum_probs=72.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCc--------EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTG--------RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~--------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
.+++..|+|-.||+|.+.++.+....... +++|+|++++++..|++++...+. ...+.+...|+....
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~----~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV----EDYIDFIQWDARELP 101 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGGEEEEE--GGGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc----CCceEEEecchhhcc
Confidence 57889999999999999999887754322 389999999999999999988764 356889998987665
Q ss_pred CCCCCccEEEecCCCCc--------------hHHHHHhcCCCCeEEEE
Q psy14962 86 LHQAPFDAIYLSTYVPE--------------IPYSILLQLKPGGRLVC 119 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~--------------~~~~~~~~L~~gG~lv~ 119 (216)
...+++|.|+++.++.. +.+.+.+++++...+++
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 45678999999999743 34677788999333333
No 156
>KOG2899|consensus
Probab=99.10 E-value=4.9e-10 Score=84.90 Aligned_cols=114 Identities=25% Similarity=0.242 Sum_probs=76.9
Q ss_pred HhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC----C----------------
Q psy14962 9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD----L---------------- 68 (216)
Q Consensus 9 ~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----~---------------- 68 (216)
.+......+..+|||||-+|.++..+++.+++ ..++|+|+++..++.|+++++..--. .
T Consensus 51 ~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~ 129 (288)
T KOG2899|consen 51 VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ 129 (288)
T ss_pred hccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc
Confidence 33334456778999999999999999999975 47999999999999999976531100 0
Q ss_pred ----------CCCCCeEEE-------eccCCCCCCCCCCccEEEecCCCC------------chHHHHHhcCCCCeEEEE
Q psy14962 69 ----------LNDGRLHLR-------CRDGRTGLLHQAPFDAIYLSTYVP------------EIPYSILLQLKPGGRLVC 119 (216)
Q Consensus 69 ----------~~~~~~~~~-------~~d~~~~~~~~~~~D~i~~~~~~~------------~~~~~~~~~L~~gG~lv~ 119 (216)
..+.++.+. ..|+. ......||+|+|-.... .++..++++|.|||+||+
T Consensus 130 ~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 130 RNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 000111111 11111 12235799998755532 267899999999999999
Q ss_pred eecCCC
Q psy14962 120 GVGKSK 125 (216)
Q Consensus 120 ~~~~~~ 125 (216)
.-..+.
T Consensus 208 EPQpWk 213 (288)
T KOG2899|consen 208 EPQPWK 213 (288)
T ss_pred cCCchH
Confidence 655543
No 157
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.08 E-value=1e-09 Score=90.54 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=77.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---C------
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---H------ 87 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~------ 87 (216)
+.+|||++||+|.++..+++.. .+|+++|.++.+++.|++++..++. .++.++.+|+..... .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~d~~~~l~~~~~~~~~~~ 278 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-----DNVQIIRMSAEEFTQAMNGVREFNR 278 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEECCHHHHHHHHhhcccccc
Confidence 3579999999999999888873 3899999999999999999988663 589999999753211 0
Q ss_pred -------CCCccEEEecCCCCchHHHH-HhcCCCCeEEEEeecCCC
Q psy14962 88 -------QAPFDAIYLSTYVPEIPYSI-LLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 88 -------~~~~D~i~~~~~~~~~~~~~-~~~L~~gG~lv~~~~~~~ 125 (216)
..+||+|+.++|-..+...+ ..+.++++.++++|.+..
T Consensus 279 ~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~t 324 (362)
T PRK05031 279 LKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPET 324 (362)
T ss_pred cccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHH
Confidence 12589999999975544333 444457888888887643
No 158
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.08 E-value=1.1e-09 Score=90.02 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=78.8
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC----------
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH---------- 87 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---------- 87 (216)
.+|||++||+|.++..+++.. .+|+++|.++++++.|++++..++. .++.++.+|+......
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~~~~ 270 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRMSAEEFTQAMNGVREFRRL 270 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEcCHHHHHHHHhhccccccc
Confidence 479999999999999888874 3899999999999999999988663 5799999997532211
Q ss_pred ------CCCccEEEecCCCCchHH-HHHhcCCCCeEEEEeecCCCCcceE
Q psy14962 88 ------QAPFDAIYLSTYVPEIPY-SILLQLKPGGRLVCGVGKSKSYHRM 130 (216)
Q Consensus 88 ------~~~~D~i~~~~~~~~~~~-~~~~~L~~gG~lv~~~~~~~~~~~~ 130 (216)
...||+|+.+.+-..+.. .+..+.+|++.++++|.+......+
T Consensus 271 ~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl 320 (353)
T TIGR02143 271 KGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANL 320 (353)
T ss_pred cccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHH
Confidence 123899999999554433 3344556888888888776433333
No 159
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.07 E-value=2.5e-09 Score=84.17 Aligned_cols=99 Identities=22% Similarity=0.163 Sum_probs=74.6
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+..+++.+. +.++.+|||+|||+|.++..+++.. ..++++|+++.+++.+++++.. ..++.++.+|+.
T Consensus 18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~ 85 (253)
T TIGR00755 18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDAL 85 (253)
T ss_pred HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchh
Confidence 345555553 4678899999999999999999884 3799999999999999877643 257899999987
Q ss_pred CCCCCCCCcc---EEEecCCCCchHHHHHhcC-CCCe
Q psy14962 83 TGLLHQAPFD---AIYLSTYVPEIPYSILLQL-KPGG 115 (216)
Q Consensus 83 ~~~~~~~~~D---~i~~~~~~~~~~~~~~~~L-~~gG 115 (216)
..... .+| .|+++.+++.....+.+++ .++.
T Consensus 86 ~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 86 KVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred cCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCC
Confidence 54432 356 8889888776656666666 4443
No 160
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.06 E-value=7.1e-10 Score=85.01 Aligned_cols=104 Identities=28% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-hCCC------CCCCCCeEEEeccCCCCCC
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR-IRPD------LLNDGRLHLRCRDGRTGLL 86 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~------~~~~~~~~~~~~d~~~~~~ 86 (216)
..++.+||..|||.|+....++.+ +.+|+|+|+|+..++.+.+.... .... .....++.+.++|+.....
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 567789999999999999999987 56999999999999887432111 0000 0123468899999876443
Q ss_pred CC-CCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962 87 HQ-APFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 87 ~~-~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~ 120 (216)
.. ++||+|+-...+.. ..+.+.++|+|||.+++.
T Consensus 112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 33 58999997766644 347899999999995443
No 161
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.06 E-value=3.2e-09 Score=79.81 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCC-CC
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQ-AP 90 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~-~~ 90 (216)
-++.+|||++||+|.++.+++.+.. ..|+++|.++.+++.+++++...+. ..++.++.+|+.... ... ..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~~~~l~~~~~~~~~ 121 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSALRALKFLAKKPTF 121 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhHHHHHHHhhccCCC
Confidence 3688999999999999999998832 3899999999999999999988653 246889999984321 112 24
Q ss_pred ccEEEecCCCCc-----hHHHHH--hcCCCCeEEEEeec
Q psy14962 91 FDAIYLSTYVPE-----IPYSIL--LQLKPGGRLVCGVG 122 (216)
Q Consensus 91 ~D~i~~~~~~~~-----~~~~~~--~~L~~gG~lv~~~~ 122 (216)
||+|+.++++.. ++..+. .+|+++|.+++...
T Consensus 122 ~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 122 DNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 899999998854 223332 47888998887543
No 162
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=5.9e-09 Score=85.70 Aligned_cols=108 Identities=26% Similarity=0.294 Sum_probs=86.9
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCC
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQ 88 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 88 (216)
...+|.+|||+++++|.-|.+++..... +..|+++|.++..++..++++.+.| ..++.++..|..... ...
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-----~~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-----VRNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCceEEEeccccccccccccc
Confidence 4689999999999999999999998754 3467999999999999999999966 477888888865322 222
Q ss_pred CCccEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 89 APFDAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 89 ~~~D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
++||.|+++.+-. .++....+.|||||.++.++++..
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 3699999988831 144677799999999999988764
No 163
>PLN02672 methionine S-methyltransferase
Probab=99.06 E-value=1.8e-09 Score=98.69 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=82.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-----------CCCCCeEEEeccCCCCC
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL-----------LNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~d~~~~~ 85 (216)
+.+|||+|||+|.+++.+++.. +..+|+++|+|+.+++.|++++..++++. ....++.++++|+....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4689999999999999999885 34699999999999999999998754320 01247899999987544
Q ss_pred CC-CCCccEEEecCCCC--------------------------------------------chHHHHHhcCCCCeEEEEe
Q psy14962 86 LH-QAPFDAIYLSTYVP--------------------------------------------EIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~-~~~~D~i~~~~~~~--------------------------------------------~~~~~~~~~L~~gG~lv~~ 120 (216)
.. ..+||+|+++.+.- .+.....++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 32 23699999988830 0124555799999999998
Q ss_pred ecCCC
Q psy14962 121 VGKSK 125 (216)
Q Consensus 121 ~~~~~ 125 (216)
....+
T Consensus 278 iG~~q 282 (1082)
T PLN02672 278 MGGRP 282 (1082)
T ss_pred ECccH
Confidence 76653
No 164
>KOG3010|consensus
Probab=99.06 E-value=2.8e-10 Score=86.24 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=68.9
Q ss_pred CCCC-eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGA-KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~-~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
.++. .++|+|||+|..+..++.+.. +|+|+|++++|++.|++....... .........++....-.+++.|+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~----~t~~~ms~~~~v~L~g~e~SVDl 103 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYC----HTPSTMSSDEMVDLLGGEESVDL 103 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccc----cCCccccccccccccCCCcceee
Confidence 3444 789999999988888888853 899999999999988875322110 01122222233333333678999
Q ss_pred EEecCCCCc-----hHHHHHhcCCCCeEEEEe
Q psy14962 94 IYLSTYVPE-----IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 94 i~~~~~~~~-----~~~~~~~~L~~gG~lv~~ 120 (216)
|++...+|+ +.+.++++||+.|-++..
T Consensus 104 I~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 104 ITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 999999877 458899999998844443
No 165
>KOG1499|consensus
Probab=99.04 E-value=1e-09 Score=87.60 Aligned_cols=100 Identities=22% Similarity=0.161 Sum_probs=77.1
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
++..++.|||+|||+|.+++..|+.. ..+|+++|.|.-+ +.|.+.+..++++ +.+.++.+.++....+..+.|
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~----~ii~vi~gkvEdi~LP~eKVD 129 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLE----DVITVIKGKVEDIELPVEKVD 129 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCcc----ceEEEeecceEEEecCcccee
Confidence 45678999999999999999999984 3599999976644 8899998887753 568888888875555567899
Q ss_pred EEEecCCCCc-----hHHHHH----hcCCCCeEEEE
Q psy14962 93 AIYLSTYVPE-----IPYSIL----LQLKPGGRLVC 119 (216)
Q Consensus 93 ~i~~~~~~~~-----~~~~~~----~~L~~gG~lv~ 119 (216)
+|++-..-.. +++.+. +.|+|||.++=
T Consensus 130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 9998766433 333333 79999998854
No 166
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.04 E-value=2.3e-09 Score=76.82 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=86.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
.+.|+..+. ...|..|||+|.|||.++..++++.-....++++|.+++.+....+... .++++++|+.
T Consensus 37 A~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii~gda~ 104 (194)
T COG3963 37 ARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----------GVNIINGDAF 104 (194)
T ss_pred HHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----------Cccccccchh
Confidence 455566655 3578899999999999999998876555689999999999988877653 4668888876
Q ss_pred CCC-----CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 83 TGL-----LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 83 ~~~-----~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
... ..+..||.|+|..++.. +++.+...|.+||.++.-+..+.
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 322 33467999999988755 45788899999999998877764
No 167
>KOG2361|consensus
Probab=99.02 E-value=1e-09 Score=83.14 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=74.2
Q ss_pred eEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----CCCCCCCccE
Q psy14962 19 KVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT----GLLHQAPFDA 93 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~ 93 (216)
+||++|||.|...--+.+.-. ++-.++++|.||.+++..+++..-. ..++...+.|... .....+++|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~------e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD------ESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc------hhhhcccceeccchhccCCCCcCccce
Confidence 799999999999877776532 2368999999999998887764321 2455555555542 2234578999
Q ss_pred EEecCCCC--------chHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 94 IYLSTYVP--------EIPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 94 i~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
|++...+. ..++++.++|||||.+++......+
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 97765553 2568999999999999998776654
No 168
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.02 E-value=3.1e-09 Score=79.63 Aligned_cols=110 Identities=20% Similarity=0.177 Sum_probs=80.5
Q ss_pred HHHHHhcccCCCCCe-EEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCC
Q psy14962 5 RIIELLEPKIQEGAK-VLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGR 82 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~-vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~ 82 (216)
.|++.|...+.+... |||||||||..+..+++.+ |.....-.|.++..+...+......+++ |+ .-+..|+.
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~-----Nv~~P~~lDv~ 86 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLP-----NVRPPLALDVS 86 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCc-----ccCCCeEeecC
Confidence 456666655666665 9999999999999999998 4567788899999987777777765542 22 23344544
Q ss_pred CCC---C-----CCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962 83 TGL---L-----HQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 83 ~~~---~-----~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~ 120 (216)
... . ..++||.|++.++++- ++..+.++|++||.|++.
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred CCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 221 1 2358999999988764 457778999999999884
No 169
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.00 E-value=2e-10 Score=86.35 Aligned_cols=96 Identities=23% Similarity=0.274 Sum_probs=71.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCCCccEE
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQAPFDAI 94 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i 94 (216)
=.++||+|||||..+..+-... ...+|+|+|.+|+++|.++-. --.+.++|.... ...++.||+|
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~----------YD~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGL----------YDTLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccc----------hHHHHHHHHHHHhhhccCCcccch
Confidence 4689999999999998887663 389999999999999987521 112333443211 1345789999
Q ss_pred EecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.+..++.. ++.-+...|+|||.|.+++.+..
T Consensus 193 ~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~ 229 (287)
T COG4976 193 VAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLP 229 (287)
T ss_pred hhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccC
Confidence 98877644 55677899999999999887665
No 170
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.00 E-value=4.5e-09 Score=79.25 Aligned_cols=100 Identities=26% Similarity=0.294 Sum_probs=74.1
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.+.+|.+|+|..||-|.+++.+|+.. ....|+++|++|..++..++++..+++ ..++..+.+|...... .+.+|
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~-~~~~d 171 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP-EGKFD 171 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-EE
T ss_pred cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC-ccccC
Confidence 36789999999999999999999853 346899999999999999999998765 3678899999876554 67899
Q ss_pred EEEecCCCC--chHHHHHhcCCCCeEEE
Q psy14962 93 AIYLSTYVP--EIPYSILLQLKPGGRLV 118 (216)
Q Consensus 93 ~i~~~~~~~--~~~~~~~~~L~~gG~lv 118 (216)
.|+++.+-. .++..+.+++++||.+-
T Consensus 172 rvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 172 RVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred EEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 999988853 47788999999998874
No 171
>PRK00536 speE spermidine synthase; Provisional
Probab=98.98 E-value=9.8e-09 Score=80.44 Aligned_cols=104 Identities=13% Similarity=-0.036 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
+...+||-+|.|.|....+++++ +. +|+.+|+++++++.+++.+....- .+..++++++.. +. ....++||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~-~~--~~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQ-LL--DLDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeeh-hh--hccCCcCCEE
Confidence 45589999999999999999998 33 999999999999999996554221 133467777652 11 1123679999
Q ss_pred EecCCC-CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 95 YLSTYV-PEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 95 ~~~~~~-~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+++... +.+.+.+++.|+|||.++.+..++.
T Consensus 144 IvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 144 ICLQEPDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred EEcCCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 999554 4567899999999999999877764
No 172
>KOG3191|consensus
Probab=98.98 E-value=8.6e-09 Score=74.94 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=82.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
...++|||||+|..+..+++..++...+.++|++|.+++...+.+..++ .+++.+..|....... ++.|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEEE
Confidence 5679999999999999999998887889999999999988888777654 4578899998766654 78999998
Q ss_pred cCCCC---------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 97 STYVP---------------------------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 97 ~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+.+.- .++.++-.+|.|.|.+++......
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 87751 133566678899999998766554
No 173
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.97 E-value=1.6e-09 Score=85.90 Aligned_cols=106 Identities=24% Similarity=0.150 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCCCc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQAPF 91 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~ 91 (216)
..|.+|||+.|=||.+++.++... ..+|+.+|.|..+++.+++++..+++ ...+++++..|+.... ...++|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGL---DLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHHHhcCCCC
Confidence 468999999999999999877652 23899999999999999999998774 2467899999986422 234689
Q ss_pred cEEEecCCC------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 92 DAIYLSTYV------------PEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 92 D~i~~~~~~------------~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|+|++++|. ..+...+.++|+|||.++++..++.
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 999999884 2245677899999999988777664
No 174
>KOG1975|consensus
Probab=98.97 E-value=2.3e-09 Score=84.45 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=80.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCCCCCCeEEEeccCCC-----CC-C
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR-PDLLNDGRLHLRCRDGRT-----GL-L 86 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~-----~~-~ 86 (216)
.++++.++++|||-|...+..-+.. -..++|+|+.+-.++.|++++..-- ......-.+.|+.+|... .. .
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 4688999999999999877766552 2489999999999999999876521 100011246788888652 11 2
Q ss_pred CCCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 87 HQAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
++.+||+|-|-..+|. ++.++.++|+|||+++.+.++..
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 2334999988777754 56889999999999999988763
No 175
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.96 E-value=9e-09 Score=76.34 Aligned_cols=106 Identities=26% Similarity=0.369 Sum_probs=68.2
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCC
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQ 88 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 88 (216)
...++.+|||+|||+|..++.+++..+ ..+|+..|.++ .++..+.++..++. ....++.+...|..... ...
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence 356789999999999999999988842 45999999998 88888888877541 12366788888765422 234
Q ss_pred CCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962 89 APFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 89 ~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~ 122 (216)
.+||+|+....+.. +...+.++|+++|.+++...
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 68999998887643 55788899999998777543
No 176
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.95 E-value=1.3e-08 Score=79.59 Aligned_cols=92 Identities=27% Similarity=0.261 Sum_probs=74.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
.....+|+|||+|+|.++..+++.. |+.+++.+|. |+.++.+++ . ++++++.+|+.... +. +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f~~~-P~--~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFFDPL-PV--ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TTTCC-SS--ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c--------cccccccccHHhhh-cc--ccc
Confidence 4566789999999999999999885 6789999997 888887777 2 78999999998333 33 999
Q ss_pred EEecCCCCc--------hHHHHHhcCCCC--eEEEEee
Q psy14962 94 IYLSTYVPE--------IPYSILLQLKPG--GRLVCGV 121 (216)
Q Consensus 94 i~~~~~~~~--------~~~~~~~~L~~g--G~lv~~~ 121 (216)
++....++. +++++++.|+|| |++++..
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 999999876 568999999998 9998853
No 177
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.95 E-value=8.1e-10 Score=83.33 Aligned_cols=106 Identities=25% Similarity=0.235 Sum_probs=84.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCC
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAP 90 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 90 (216)
.+.|.+|||.|.|-|+.++..+++ ++ .|+.+|.++..++.|.-+-.+.++ ...++.++.+|..... ..+++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l---~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSREL---FEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccc---cccccEEecccHHHHHhcCCccc
Confidence 456999999999999999999988 44 999999999999988766444332 2346899999975322 34678
Q ss_pred ccEEEecCCC---------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 91 FDAIYLSTYV---------PEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 91 ~D~i~~~~~~---------~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
||+|+-+.+- ..+.++++++|||||.++-.+.+|.
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 9999988874 2245899999999999999888875
No 178
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=9.3e-09 Score=86.22 Aligned_cols=114 Identities=22% Similarity=0.204 Sum_probs=89.5
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
|+..+.+.+. ..++.+|+|+-||.|.++..+|+.. .+|+|+|+++++++.|+++++.++ ..|+.|..++.
T Consensus 281 l~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~~~a 350 (432)
T COG2265 281 LYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANG-----IDNVEFIAGDA 350 (432)
T ss_pred HHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEeCCH
Confidence 4555666664 3567899999999999999999773 499999999999999999999977 47799999998
Q ss_pred CCCCCC---CCCccEEEecCCCCchH---HHHHhcCCCCeEEEEeecCCC
Q psy14962 82 RTGLLH---QAPFDAIYLSTYVPEIP---YSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 82 ~~~~~~---~~~~D~i~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+..... ...+|.|+.+.+-..+. -.....++|..+++++|....
T Consensus 351 e~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~T 400 (432)
T COG2265 351 EEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPAT 400 (432)
T ss_pred HHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHH
Confidence 754432 35789999999975433 233345678888999987764
No 179
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.93 E-value=1.8e-09 Score=80.56 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=79.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.+...+....-+|.+|||+.||+|.++.+.+.+.. .+|+.+|.++..+...++++...+. ..++.++..|....
T Consensus 31 alFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 31 ALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSHHHH
T ss_pred HHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCC----CcceeeeccCHHHH
Confidence 34444443213689999999999999999888842 4999999999999999999998664 23588899986532
Q ss_pred C----CCCCCccEEEecCCCCc------hHHHHH--hcCCCCeEEEEeecCC
Q psy14962 85 L----LHQAPFDAIYLSTYVPE------IPYSIL--LQLKPGGRLVCGVGKS 124 (216)
Q Consensus 85 ~----~~~~~~D~i~~~~~~~~------~~~~~~--~~L~~gG~lv~~~~~~ 124 (216)
. ....+||+|++++|... ++..+. .+|+++|.+++.....
T Consensus 105 l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 2 13578999999999854 223444 6889999999976555
No 180
>PLN02823 spermine synthase
Probab=98.93 E-value=1.4e-08 Score=82.53 Aligned_cols=106 Identities=23% Similarity=0.248 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i 94 (216)
...+||.+|+|.|..+.++++.. +..+++++|+++++++.|++.+..... .+..++++++.+|+..... ..++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~-~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc-cccCCceEEEEChhHHHHhhCCCCccEE
Confidence 45789999999999999888863 235899999999999999988753210 1224789999999874332 24689999
Q ss_pred EecCCCC------------chHH-HHHhcCCCCeEEEEeecC
Q psy14962 95 YLSTYVP------------EIPY-SILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 95 ~~~~~~~------------~~~~-~~~~~L~~gG~lv~~~~~ 123 (216)
+++..-+ .+.+ .+.+.|+|||.+++...+
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 9984321 1445 789999999999887544
No 181
>KOG0820|consensus
Probab=98.92 E-value=1.7e-08 Score=77.95 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=66.9
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.+++++.|||+|.|||.+|..+.+. +.+|+++|+++.|+....++....-. ....+++.+|+..... ..||
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~----~~kLqV~~gD~lK~d~--P~fd 125 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPK----SGKLQVLHGDFLKTDL--PRFD 125 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCc----cceeeEEecccccCCC--cccc
Confidence 4789999999999999999999988 56999999999999999998765321 3678999999876543 3499
Q ss_pred EEEecCCCCc
Q psy14962 93 AIYLSTYVPE 102 (216)
Q Consensus 93 ~i~~~~~~~~ 102 (216)
.++++.+..-
T Consensus 126 ~cVsNlPyqI 135 (315)
T KOG0820|consen 126 GCVSNLPYQI 135 (315)
T ss_pred eeeccCCccc
Confidence 9999887644
No 182
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.92 E-value=1.5e-08 Score=83.97 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
+.+|||++||+|..++.++...+ ...|+++|+++.+++.+++++..+++ .++.+...|+.........||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL-----ENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-----CceEEEhhhHHHHHhhcCCCCEEEE
Confidence 46899999999999999988754 34899999999999999999988763 4667888887543221456999999
Q ss_pred cCCCC--chHHHHHhcCCCCeEEEEeec
Q psy14962 97 STYVP--EIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 97 ~~~~~--~~~~~~~~~L~~gG~lv~~~~ 122 (216)
+.+-. .++....+.+++||.++++..
T Consensus 132 DP~Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 132 DPFGSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEEec
Confidence 86422 345666777899999999843
No 183
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.92 E-value=1.5e-08 Score=81.75 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCCCeEEEec-cCC---CCC-CCCC
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-RPDLLNDGRLHLRCR-DGR---TGL-LHQA 89 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-d~~---~~~-~~~~ 89 (216)
++.++||||||+|.+...++... ++.+++|+|+++.+++.|++++..+ ++ ..++.+... |.. ... ...+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhcccccCC
Confidence 45789999999998887777654 3679999999999999999999886 44 256776542 221 111 1356
Q ss_pred CccEEEecCCCCc
Q psy14962 90 PFDAIYLSTYVPE 102 (216)
Q Consensus 90 ~~D~i~~~~~~~~ 102 (216)
.||+|+|+.++..
T Consensus 189 ~fDlivcNPPf~~ 201 (321)
T PRK11727 189 RFDATLCNPPFHA 201 (321)
T ss_pred ceEEEEeCCCCcC
Confidence 8999999999865
No 184
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.90 E-value=4.4e-08 Score=73.99 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=81.2
Q ss_pred HHHHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 3 QARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 3 ~~~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
.+.++.-+. .++.+|.+||-+|+++|....+++--+++.+.|+++|.++......-....+ .+|+--+..|+
T Consensus 59 aAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~DA 131 (229)
T PF01269_consen 59 AAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILEDA 131 (229)
T ss_dssp HHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES-T
T ss_pred HHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeeccC
Confidence 344444444 4678999999999999999999999999888999999999876665555444 37888899998
Q ss_pred CCCCC---CCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeec
Q psy14962 82 RTGLL---HQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 82 ~~~~~---~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~ 122 (216)
..... --+..|+|+++-.-+. +..++...||+||.++++.-
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 74321 1257999999977655 45777789999999999753
No 185
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.4e-08 Score=77.71 Aligned_cols=99 Identities=20% Similarity=0.135 Sum_probs=75.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+..+++... +.++++|+|||+|.|.+|..+++. +..|+++|+++.++...++.... ..++.++.+|+.
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~DaL 86 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGDAL 86 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCchh
Confidence 455666654 567899999999999999999998 34899999999999999888653 378999999987
Q ss_pred CCCCCCC-CccEEEecCCCCchHHHHHhcCCC
Q psy14962 83 TGLLHQA-PFDAIYLSTYVPEIPYSILLQLKP 113 (216)
Q Consensus 83 ~~~~~~~-~~D~i~~~~~~~~~~~~~~~~L~~ 113 (216)
....+.- .++.|+++.+..-...-+.+++..
T Consensus 87 k~d~~~l~~~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 87 KFDFPSLAQPYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred cCcchhhcCCCEEEEcCCCcccHHHHHHHHhc
Confidence 6554321 578999998876544334443333
No 186
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.88 E-value=2.1e-08 Score=86.19 Aligned_cols=104 Identities=19% Similarity=0.117 Sum_probs=85.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--CCCCCCCCccE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--TGLLHQAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~ 93 (216)
.+..+||||||.|.++..+|+. .|+..++|+|+....+..+.+.....+ ..|+.++..|+. ....+.+++|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHHHHHHhcCcccccE
Confidence 4567999999999999999998 467899999999999998888877755 378888888764 22235678999
Q ss_pred EEecCCCCc--------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 94 IYLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|+.+.+-+| ++..+.+.|+|||.+.+.+.+..
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 999888655 45789999999999999876664
No 187
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.87 E-value=2.5e-08 Score=79.04 Aligned_cols=106 Identities=25% Similarity=0.184 Sum_probs=83.8
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEEEe
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIYL 96 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~ 96 (216)
.+||.||.|.|..+.+++++.. -.+++.+|++++.++.+++.+.....-.. .+++.++..|+...... ..+||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 5999999999999999999853 46999999999999999998765331111 47889999998644432 237999998
Q ss_pred cCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 97 STYVP----------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 97 ~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+..-+ .+.+.+++.|+++|+++....++.
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~ 194 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPF 194 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 76654 256899999999999999866553
No 188
>KOG1663|consensus
Probab=98.87 E-value=3.7e-08 Score=74.46 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------CCC
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------LHQ 88 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 88 (216)
..++++||+|.=||+.+..+|..+.++++|+++|+++..++.+.+..+..+. ...++++++++.+.. ...
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALESLDELLADGES 147 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhhhHHHHHhcCCC
Confidence 4578999999999999999999998889999999999999999888887765 378999999875332 134
Q ss_pred CCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962 89 APFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 89 ~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~ 120 (216)
++||.+|.+.-=.. ..+++.+++|+||.+++.
T Consensus 148 ~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 148 GTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence 78999999876433 558899999999999984
No 189
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.87 E-value=8.4e-09 Score=82.23 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=72.4
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
|+..+++.+. +.++..++|++||.|..+..+++.+++.+.|+|+|.++.+++.|++++.. ..++.+++.|+
T Consensus 7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f 77 (296)
T PRK00050 7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNF 77 (296)
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCH
Confidence 5677788876 47888999999999999999999976567999999999999999988754 26899999997
Q ss_pred CCCC--CCC--CCccEEEecCCC
Q psy14962 82 RTGL--LHQ--APFDAIYLSTYV 100 (216)
Q Consensus 82 ~~~~--~~~--~~~D~i~~~~~~ 100 (216)
.... ... .++|.|+.+.+.
T Consensus 78 ~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 78 SNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHHcCCCccCEEEECCCc
Confidence 6321 111 279999987775
No 190
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.85 E-value=5.5e-08 Score=71.92 Aligned_cols=113 Identities=27% Similarity=0.311 Sum_probs=83.9
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
+-..+.+.--+|.++||+.+|+|.++.+.+.+.. ..++.+|.+...+...++++...+. ..+..++..|+....
T Consensus 33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~~~~da~~~L 106 (187)
T COG0742 33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGL----EGEARVLRNDALRAL 106 (187)
T ss_pred HHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCC----ccceEEEeecHHHHH
Confidence 3344443124689999999999999999998843 4999999999999999999887553 367888888876321
Q ss_pred ---CCCCCccEEEecCCCCc-hH----H--H--HHhcCCCCeEEEEeecCC
Q psy14962 86 ---LHQAPFDAIYLSTYVPE-IP----Y--S--ILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 86 ---~~~~~~D~i~~~~~~~~-~~----~--~--~~~~L~~gG~lv~~~~~~ 124 (216)
...++||+|+.++|+.. +. . . -..+|+|+|.+++.....
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 12235999999999974 21 1 1 236899999999965544
No 191
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.83 E-value=1.8e-08 Score=73.78 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=61.1
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEE
Q psy14962 45 FGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLV 118 (216)
Q Consensus 45 ~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv 118 (216)
+|+|+|++|++.|+++...... ....+++++.+|+...+..+++||+|++...+++ .+++++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 4899999999999877543110 0124689999999877666789999999888765 4689999999999999
Q ss_pred EeecCC
Q psy14962 119 CGVGKS 124 (216)
Q Consensus 119 ~~~~~~ 124 (216)
+.....
T Consensus 79 i~d~~~ 84 (160)
T PLN02232 79 ILDFNK 84 (160)
T ss_pred EEECCC
Confidence 876654
No 192
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.83 E-value=3.8e-08 Score=79.56 Aligned_cols=106 Identities=23% Similarity=0.182 Sum_probs=89.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
..+|.+|+|.-||-|++++.+|++..+ +|+++|++|.+++..++++..++.+ ..+..+++|........+.+|.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~----~~v~~i~gD~rev~~~~~~aDr 259 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVE----GRVEPILGDAREVAPELGVADR 259 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCcc----ceeeEEeccHHHhhhccccCCE
Confidence 457999999999999999999998543 5999999999999999999987752 4588999998766554478999
Q ss_pred EEecCCC--CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 94 IYLSTYV--PEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|+.+.+- +.++....+.+++||.+.+....+.
T Consensus 260 Iim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 260 IIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred EEeCCCCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 9999886 5577888999999999988766554
No 193
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.82 E-value=1.2e-07 Score=74.27 Aligned_cols=145 Identities=14% Similarity=0.059 Sum_probs=101.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CC-CCCc
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LH-QAPF 91 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~-~~~~ 91 (216)
..-+|+||.||.|.+........+. ..+|...|.++..++.+++..++.|++ +-++|.++|+.+.. .. .-..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhccCCCC
Confidence 4468999999999998888777542 148888999999999999999998862 44499999987432 11 2346
Q ss_pred cEEEecCCCCc---------hHHHHHhcCCCCeEEEEee--cCCCCcceEEEEEecCCCceeeeeeeeeeeceecccccc
Q psy14962 92 DAIYLSTYVPE---------IPYSILLQLKPGGRLVCGV--GKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINAD 160 (216)
Q Consensus 92 D~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (216)
++++++..++- .+.-+.+.+.|||+++.+- +||+. + .+ ..-+++.
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-e---~I-------------------Ar~LtsH- 266 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-E---MI-------------------ARVLTSH- 266 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-H---HH-------------------HHHHhcc-
Confidence 88988877643 3466778999999999976 55541 0 00 0001111
Q ss_pred ccccchhhhhcccccCcceEEEeeccccccccccccCCCCc
Q psy14962 161 EQNDNWLYQQSRSEDGTHFQKYEISLENFINPLINADEQND 201 (216)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agf~~~ 201 (216)
..+...+-..+|-.|+.....+|||+-.
T Consensus 267 -------------r~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 267 -------------RDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred -------------cCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 1122344567889999999999999843
No 194
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.81 E-value=3.3e-08 Score=76.17 Aligned_cols=95 Identities=25% Similarity=0.289 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeE-EEeccCC-----CCCCCC
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH-LRCRDGR-----TGLLHQ 88 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~d~~-----~~~~~~ 88 (216)
.++.+|||+|||||.++..+++. + ..+|+++|+++.++.... .. ..++. +...++. .....-
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l---~~-------~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKL---RQ-------DERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHH---hc-------CCCeeEeecCCcccCCHhHcCCCc
Confidence 36789999999999999999987 2 348999999998876521 11 01221 1222222 111122
Q ss_pred CCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
..+|+++++... ++..+.+.|++ |.+++..-++
T Consensus 142 ~~~DvsfiS~~~--~l~~i~~~l~~-~~~~~L~KPq 174 (228)
T TIGR00478 142 ATFDVSFISLIS--ILPELDLLLNP-NDLTLLFKPQ 174 (228)
T ss_pred eeeeEEEeehHh--HHHHHHHHhCc-CeEEEEcChH
Confidence 357777665444 67899999999 8877765444
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.81 E-value=9e-08 Score=71.39 Aligned_cols=103 Identities=26% Similarity=0.279 Sum_probs=81.1
Q ss_pred CCCCC-eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 14 IQEGA-KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 14 ~~~~~-~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
+.... +++|+|+|.|.-++.++=.. |..+++.+|....-+.+.+......++ .|+.+++..++. ......||
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~-~~~~~~fd 117 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL-----SNVEVINGRAEE-PEYRESFD 117 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHH-TTTTT-EE
T ss_pred hccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC-----CCEEEEEeeecc-cccCCCcc
Confidence 44444 89999999999999888765 577999999999999999888888664 789999999876 33457899
Q ss_pred EEEecCCCC--chHHHHHhcCCCCeEEEEeecC
Q psy14962 93 AIYLSTYVP--EIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 93 ~i~~~~~~~--~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
+|++.+..+ .+.+-+...+++||.+++.-..
T Consensus 118 ~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 118 VVTARAVAPLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp EEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred EEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 999987764 4667888999999999986543
No 196
>PRK04148 hypothetical protein; Provisional
Probab=98.80 E-value=1.8e-07 Score=65.66 Aligned_cols=95 Identities=18% Similarity=0.078 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccE
Q psy14962 16 EGAKVLDIGSGSGF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~ 93 (216)
.+.+|+|+|||+|. .+..+++. +..|+++|+++..++.+++. .++++..|....... -..+|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCE
Confidence 45789999999996 77777755 46999999999988877654 367889998754332 256899
Q ss_pred EEecCCCCchHHHHHhcCCC-CeEEEEeecCCC
Q psy14962 94 IYLSTYVPEIPYSILLQLKP-GGRLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~ 125 (216)
|++..+-+.+...+.++-+. |.-+++.....+
T Consensus 81 iysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 81 IYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 99999988877666665555 666777655443
No 197
>KOG3420|consensus
Probab=98.79 E-value=1.4e-08 Score=71.16 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
+|.+++|+|||.|-+....+.. + ...|+|+|++|++++.+++++.... -+++++++|........+.||.++
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~-~-~e~vlGfDIdpeALEIf~rNaeEfE------vqidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP-K-NESVLGFDIDPEALEIFTRNAEEFE------VQIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC-C-CceEEeeecCHHHHHHHhhchHHhh------hhhheeeeeccchhccCCeEeeEE
Confidence 6889999999999998655543 2 3489999999999999999988754 457899999887777778999999
Q ss_pred ecCCCC
Q psy14962 96 LSTYVP 101 (216)
Q Consensus 96 ~~~~~~ 101 (216)
.+.++.
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 999973
No 198
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.78 E-value=2.9e-08 Score=77.67 Aligned_cols=109 Identities=28% Similarity=0.261 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCC-Ccc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQA-PFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-~~D 92 (216)
....+||-||.|.|..+..+.+.. +..+++++|+++..++.+++.+...... +...+++++..|+..... ..+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCccc
Confidence 357899999999999999998873 2358999999999999999976642210 224689999999863322 123 799
Q ss_pred EEEecCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962 93 AIYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+|+++..-+ .+.+.+++.|+|||.+++...++.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence 999876642 255899999999999999875554
No 199
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.78 E-value=3.1e-08 Score=83.65 Aligned_cols=97 Identities=24% Similarity=0.213 Sum_probs=67.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELV---GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+..|+|+|||+|.+....++.. +...+|+++|.++.+....++++..++. .++|+++.+|++.... ..++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v~l-pekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREVEL-PEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTSCH-SS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCCCC-CCceeE
Confidence 4679999999999987766542 2235999999999888777776566543 4789999999985544 348999
Q ss_pred EEecCC----C----CchHHHHHhcCCCCeEEE
Q psy14962 94 IYLSTY----V----PEIPYSILLQLKPGGRLV 118 (216)
Q Consensus 94 i~~~~~----~----~~~~~~~~~~L~~gG~lv 118 (216)
|++-.. . +..+....+.|||||+++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 997332 1 224456668999998775
No 200
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.75 E-value=3.3e-08 Score=78.90 Aligned_cols=106 Identities=25% Similarity=0.304 Sum_probs=85.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPF 91 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 91 (216)
..+|..|||+++++|.-+..++......+.+++.|+++..+...++++.+.| ..++.+...|..... .....|
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-----~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-----VFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHTTTE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-----CceEEEEeecccccccccccccc
Confidence 5789999999999999999999998766799999999999999999999865 478888877765331 123469
Q ss_pred cEEEecCCCC----------------------------chHHHHHhcC----CCCeEEEEeecCC
Q psy14962 92 DAIYLSTYVP----------------------------EIPYSILLQL----KPGGRLVCGVGKS 124 (216)
Q Consensus 92 D~i~~~~~~~----------------------------~~~~~~~~~L----~~gG~lv~~~~~~ 124 (216)
|.|+++.+-. .+++...+.+ ||||+++.++.+.
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 9999988731 1346777899 9999999998765
No 201
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.74 E-value=4.4e-08 Score=73.31 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=60.3
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT 83 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (216)
..+++.+. ..+++..|.|+|||.+.++..+. ....|+..|+.. .+-.++.+|+..
T Consensus 61 d~iI~~l~-~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva--------------------~n~~Vtacdia~ 115 (219)
T PF05148_consen 61 DVIIEWLK-KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA--------------------PNPRVTACDIAN 115 (219)
T ss_dssp HHHHHHHC-TS-TTS-EEEES-TT-HHHHH------S---EEEEESS---------------------SSTTEEES-TTS
T ss_pred HHHHHHHH-hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC--------------------CCCCEEEecCcc
Confidence 45677776 34556789999999999875443 234799999743 234578899988
Q ss_pred CCCCCCCccEEEecCCC-----CchHHHHHhcCCCCeEEEEeec
Q psy14962 84 GLLHQAPFDAIYLSTYV-----PEIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~ 122 (216)
.+.++++.|+++.+..+ ..++.+..|+|||||.+.+...
T Consensus 116 vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 116 VPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp -S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEe
Confidence 88888999999887665 3467899999999999988643
No 202
>KOG1500|consensus
Probab=98.72 E-value=9.1e-08 Score=76.08 Aligned_cols=98 Identities=24% Similarity=0.253 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
.+..|||+|||+|.++...+... ..+|+++|. .+|.+.|++..+.+++ .+++.++.+..++... .++.|+||
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEA-S~MAqyA~~Lv~~N~~----~~rItVI~GKiEdieL-PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEA-SEMAQYARKLVASNNL----ADRITVIPGKIEDIEL-PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEeh-hHHHHHHHHHHhcCCc----cceEEEccCccccccC-chhccEEE
Confidence 57789999999999999888874 349999995 5699999998888654 5889999998875544 34689998
Q ss_pred ecCCC-----CchH---HHHHhcCCCCeEEEEee
Q psy14962 96 LSTYV-----PEIP---YSILLQLKPGGRLVCGV 121 (216)
Q Consensus 96 ~~~~~-----~~~~---~~~~~~L~~gG~lv~~~ 121 (216)
+-..- +.++ -..++.|+|.|.++=+.
T Consensus 249 SEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 249 SEPMGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred eccchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 75542 1222 34569999999886543
No 203
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.70 E-value=2.6e-07 Score=74.29 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHhCCCCCCCCCeEEEeccCCCCCC-CCCCc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET--VMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPF 91 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 91 (216)
+...+||-+|.|.|....++.+.-+ -.+++-+|.+|+|++.++++ +++.+--++..++++++..|+..... ..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~-~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQ-VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCC-cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4456899999999999999998832 35999999999999999943 44433223456789999999764332 23589
Q ss_pred cEEEecCCCCc-----------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 92 DAIYLSTYVPE-----------IPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 92 D~i~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
|.||.+.+-+. +...+++.|+++|.++++..++..
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~ 412 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF 412 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence 99999888654 236778999999999999888763
No 204
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.69 E-value=6.8e-08 Score=79.49 Aligned_cols=113 Identities=23% Similarity=0.250 Sum_probs=70.3
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
|+..+++.+. ..++ +|||+.||.|.++..+|+.. .+|+|+|.++++++.|++++..++ ..|+.|+.+++
T Consensus 185 l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~~~ 253 (352)
T PF05958_consen 185 LYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--S
T ss_pred HHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEeec
Confidence 4555566554 2334 89999999999999999874 499999999999999999999877 47899998765
Q ss_pred CCCC----------------CCCCCccEEEecCCCCchHHHHHhc-CCCCeEEEEeecCCC
Q psy14962 82 RTGL----------------LHQAPFDAIYLSTYVPEIPYSILLQ-LKPGGRLVCGVGKSK 125 (216)
Q Consensus 82 ~~~~----------------~~~~~~D~i~~~~~~~~~~~~~~~~-L~~gG~lv~~~~~~~ 125 (216)
.... .....+|+|+.++|-..+...+.+. .++.-+++++|.+..
T Consensus 254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~t 314 (352)
T PF05958_consen 254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPAT 314 (352)
T ss_dssp HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHH
T ss_pred cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHH
Confidence 3211 1123589999999865433222211 134556666665543
No 205
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.64 E-value=5.7e-08 Score=73.29 Aligned_cols=98 Identities=20% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
-.+.||+|||-|..|..++...- -+|..+|+.+..++.|++.+.... ..-.++.+...+...+..++||+|++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEE
T ss_pred cceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEe
Confidence 46799999999999987754432 389999999999999997654311 12346777766655555678999999
Q ss_pred cCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962 97 STYVPE--------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 97 ~~~~~~--------~~~~~~~~L~~gG~lv~~~ 121 (216)
...+.+ +++++.+.|+|+|.+++-.
T Consensus 129 QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 129 QWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp ES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 888765 5688999999999999954
No 206
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.64 E-value=1.9e-07 Score=75.68 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=76.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEE
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELV------GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL 76 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~------~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 76 (216)
+..|++++. ..++.+|+|.+||+|.+...+.+.+ ....+++|+|+++.++..|+-++.-.+. ...+..+
T Consensus 35 ~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~---~~~~~~i 109 (311)
T PF02384_consen 35 VDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI---DNSNINI 109 (311)
T ss_dssp HHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH---HCBGCEE
T ss_pred HHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc---ccccccc
Confidence 344555553 4677899999999999998887753 1356999999999999988877654331 1233457
Q ss_pred EeccCCCCCCC--CCCccEEEecCCCCc---------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 77 RCRDGRTGLLH--QAPFDAIYLSTYVPE---------------------------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 77 ~~~d~~~~~~~--~~~~D~i~~~~~~~~---------------------------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
...|....... ...||+|++++|+.. ++..+.+.|++||++.+.++..
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 88886543322 468999999988621 2367779999999987776653
No 207
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.63 E-value=5.2e-08 Score=70.83 Aligned_cols=77 Identities=25% Similarity=0.214 Sum_probs=55.4
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CC-CccEE
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QA-PFDAI 94 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~-~~D~i 94 (216)
..|+|+.||.|..++.+|+.+ .+|+++|+++..++.|+.++.--|. .+++.++++|+...... .. .+|+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHHHhhccccccccEE
Confidence 369999999999999999984 3899999999999999999988653 36899999998643321 12 28999
Q ss_pred EecCCCC
Q psy14962 95 YLSTYVP 101 (216)
Q Consensus 95 ~~~~~~~ 101 (216)
++++|+.
T Consensus 74 FlSPPWG 80 (163)
T PF09445_consen 74 FLSPPWG 80 (163)
T ss_dssp EE---BS
T ss_pred EECCCCC
Confidence 9999873
No 208
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.62 E-value=2.9e-07 Score=76.06 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=79.4
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEEEe
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIYL 96 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~ 96 (216)
.+|||+.||+|..++.++...+....|+++|+++..++.+++++..++. .++.+++.|+...... ...||+|..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 5899999999999999998742224899999999999999999987653 4688999987643321 356999999
Q ss_pred cCCCC--chHHHHHhcCCCCeEEEEee
Q psy14962 97 STYVP--EIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 97 ~~~~~--~~~~~~~~~L~~gG~lv~~~ 121 (216)
+..-. .++..+.+.+++||.+.++.
T Consensus 121 DPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 121 DPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 87322 46788889999999999985
No 209
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.61 E-value=3.5e-07 Score=72.79 Aligned_cols=104 Identities=20% Similarity=0.207 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCch----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHH-H------------HhCCC---------
Q psy14962 17 GAKVLDIGSGSGF----MSCVFAELVGK---TGRVFGVEHMREQCEDAWETV-M------------RIRPD--------- 67 (216)
Q Consensus 17 ~~~vldiG~G~G~----~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~-~------------~~~~~--------- 67 (216)
.-+|+..||+||. +++.+.+..+. ..+|+|+|+|+.+++.|++.. . .....
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999995 33333333221 358999999999999998741 0 00000
Q ss_pred ----CCCCCCeEEEeccCCCCC-CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962 68 ----LLNDGRLHLRCRDGRTGL-LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 68 ----~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~ 120 (216)
+.-...+.|...|..... ...+.||+|+|.+.+.+ ++..+.+.|+|||+|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 001145677777776532 23578999999877643 568889999999998774
No 210
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=7.3e-07 Score=66.15 Aligned_cols=113 Identities=26% Similarity=0.364 Sum_probs=87.5
Q ss_pred hHHHHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc
Q psy14962 2 QQARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD 80 (216)
Q Consensus 2 ~~~~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 80 (216)
+.+.++.-+. .++.+|++||-+|+.+|....+++--.+ .+.++++|.++.+....-..+.+ ..|+--+.+|
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~D 132 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILED 132 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeecc
Confidence 4556666665 4678999999999999999999998876 67999999999987776666555 3678888999
Q ss_pred CCCCCC---CCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeec
Q psy14962 81 GRTGLL---HQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 81 ~~~~~~---~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~ 122 (216)
+..... --+..|+|+.+-.-+. +..++...|++||.++++.-
T Consensus 133 A~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred cCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 864331 1156899999877655 44788899999998888643
No 211
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.59 E-value=3e-07 Score=69.35 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=62.3
Q ss_pred CCCeEEEEcCCCchH----HHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHHH-------------HHhCC-CCC----
Q psy14962 16 EGAKVLDIGSGSGFM----SCVFAELVG---K-TGRVFGVEHMREQCEDAWETV-------------MRIRP-DLL---- 69 (216)
Q Consensus 16 ~~~~vldiG~G~G~~----~~~l~~~~~---~-~~~v~~~D~~~~~~~~a~~~~-------------~~~~~-~~~---- 69 (216)
..-+|+..||++|.- ++.+..... + ..+++|+|+|+.+++.|++.. .+... ...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 346899999999963 333333111 1 359999999999999998521 00000 000
Q ss_pred -----CCCCeEEEeccCCCCCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962 70 -----NDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 70 -----~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~ 120 (216)
-..++.|...|........+.||+|+|.+++-. +++.+++.|+|||+|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 014688888888763445678999999999743 568889999999999994
No 212
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.1e-06 Score=71.70 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=83.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhC---C----------------------------Cc-------EEEEEeCCHHHHH
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVG---K----------------------------TG-------RVFGVEHMREQCE 55 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~---~----------------------------~~-------~v~~~D~~~~~~~ 55 (216)
-.++..++|--||+|.+.++.|.... | .+ .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 46778999999999999999887642 1 01 3779999999999
Q ss_pred HHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc--------------hHHHHHhcCCCCeEEEEee
Q psy14962 56 DAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE--------------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 56 ~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~ 121 (216)
.|+.++...|+ .+-+.|..+|+.......+.+|+||++.|... +...+++.++.-+..+++.
T Consensus 269 ~Ak~NA~~AGv----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 269 GAKANARAAGV----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHhcCC----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999999886 47799999998755444368999999999732 2256667888878888865
Q ss_pred cCC
Q psy14962 122 GKS 124 (216)
Q Consensus 122 ~~~ 124 (216)
...
T Consensus 345 ~e~ 347 (381)
T COG0116 345 SED 347 (381)
T ss_pred cHH
Confidence 544
No 213
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.58 E-value=1.4e-06 Score=68.59 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=71.8
Q ss_pred CCeEEEEcCCCch----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHH-----hCCC--------CCC-----
Q psy14962 17 GAKVLDIGSGSGF----MSCVFAELVG----KTGRVFGVEHMREQCEDAWETVMR-----IRPD--------LLN----- 70 (216)
Q Consensus 17 ~~~vldiG~G~G~----~~~~l~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~-----~~~~--------~~~----- 70 (216)
.-+|+-+||+||. +++.+.+..+ ...+|+|+|+|...++.|+...-. .+++ ...
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999995 4444455543 246999999999999999853211 1100 000
Q ss_pred ------CCCeEEEeccCCCCCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962 71 ------DGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 71 ------~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~ 120 (216)
...|.|...|........+.||+|+|-+++-. +++.++..|+|||+|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 12466666676544434567999999999733 668889999999999984
No 214
>KOG2187|consensus
Probab=98.55 E-value=2.6e-07 Score=77.36 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=80.2
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.+-+.+. +..+..++|++||||.++..+++.. .+|+|+|+++..+..|++++..+| +.|++|+++-+++.
T Consensus 374 ~i~e~~~--l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 374 TIGEWAG--LPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHhC--CCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcC-----ccceeeeecchhhc
Confidence 3444444 5677889999999999999999885 389999999999999999999987 58999999955532
Q ss_pred CC---CC--CCcc-EEEecCCCC---c-hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 85 LL---HQ--APFD-AIYLSTYVP---E-IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 85 ~~---~~--~~~D-~i~~~~~~~---~-~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.. .. ++=+ +++++.+-. . ++..+++.-++--.++++|....
T Consensus 444 ~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 444 FPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred cchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 21 11 2335 556665542 2 44566666557777777776553
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=8.7e-07 Score=67.35 Aligned_cols=98 Identities=19% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
+.+++|||+|.|.-++.+|-. .|+.+++-+|.....+.+.+......++ .|+.++++.++........||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L-----~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL-----ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC-----CCeEEehhhHhhcccccccCcEEEe
Confidence 589999999999999998843 4667899999999999999888888654 7899999998755432211999998
Q ss_pred cCCC--CchHHHHHhcCCCCeEEEEe
Q psy14962 97 STYV--PEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 97 ~~~~--~~~~~~~~~~L~~gG~lv~~ 120 (216)
.+.. ..+.+-+...+++||.++..
T Consensus 142 RAva~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 142 RAVASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ehccchHHHHHHHHHhcccCCcchhh
Confidence 7664 44667788999999988653
No 216
>KOG1122|consensus
Probab=98.55 E-value=9.6e-07 Score=72.27 Aligned_cols=106 Identities=22% Similarity=0.270 Sum_probs=85.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CCCc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QAPF 91 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~ 91 (216)
.++|.+|||.++.+|.-+.++|..+...+.|++.|.+...+.....++.+.| ..+..+...|....+.. .++|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-----v~ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-----VTNTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-----CCceEEEccCcccccccccCccc
Confidence 5789999999999999999998888777899999999999999999999866 47778888887643211 2379
Q ss_pred cEEEecCCCCc----------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 92 DAIYLSTYVPE----------------------------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 92 D~i~~~~~~~~----------------------------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|.|..+++-.. ++.+....+++||++|.++++-
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 99998777311 3356668999999999988765
No 217
>KOG3987|consensus
Probab=98.51 E-value=1.1e-08 Score=75.93 Aligned_cols=93 Identities=19% Similarity=0.246 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
...++||+|+|.|.++..++..+. +|++.|.|..|....+++ +.+++... +....+-+||+|.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk------------~ynVl~~~--ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK------------NYNVLTEI--EWLQTDVKLDLIL 174 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc------------CCceeeeh--hhhhcCceeehHH
Confidence 346899999999999999998863 799999999998766543 22222211 1222344699998
Q ss_pred ecCCCCc------hHHHHHhcCCC-CeEEEEeecCCC
Q psy14962 96 LSTYVPE------IPYSILLQLKP-GGRLVCGVGKSK 125 (216)
Q Consensus 96 ~~~~~~~------~~~~~~~~L~~-gG~lv~~~~~~~ 125 (216)
|-..+.. +++.++.+|+| .|++++...-|.
T Consensus 175 clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~ 211 (288)
T KOG3987|consen 175 CLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY 211 (288)
T ss_pred HHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 8766532 67899999999 899888755443
No 218
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.48 E-value=3.9e-06 Score=75.15 Aligned_cols=107 Identities=17% Similarity=0.097 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhC---C--------------------------------------CcEEEEEeCCHHH
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVG---K--------------------------------------TGRVFGVEHMREQ 53 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~---~--------------------------------------~~~v~~~D~~~~~ 53 (216)
.++..++|.+||+|.+.++.+.... | ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 4678999999999999998876311 1 1269999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CCCccEEEecCCCCc----------hHH---HHHhcCCCCeEEE
Q psy14962 54 CEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QAPFDAIYLSTYVPE----------IPY---SILLQLKPGGRLV 118 (216)
Q Consensus 54 ~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~~~~----------~~~---~~~~~L~~gG~lv 118 (216)
+..|++++...|+ .+.+.+..+|+...... .+++|+|++++|+.. +.. ...+...+|+.++
T Consensus 269 v~~A~~N~~~~g~----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 269 IQAARKNARRAGV----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHHHcCC----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9999999998775 25688999998654322 257999999999732 112 2233445898888
Q ss_pred EeecCCC
Q psy14962 119 CGVGKSK 125 (216)
Q Consensus 119 ~~~~~~~ 125 (216)
+.+.+..
T Consensus 345 llt~~~~ 351 (702)
T PRK11783 345 LFSSSPE 351 (702)
T ss_pred EEeCCHH
Confidence 8776653
No 219
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.48 E-value=1.4e-06 Score=68.98 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=68.6
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
++..+++.+. +.++..|+|+|+|+|.+|..+++.. .+++++|.++.+.+..++.+.. ..++.++.+|+
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~D~ 85 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------NPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES-T
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------cccceeeecch
Confidence 3566777775 4588999999999999999999884 5999999999999988887653 37899999998
Q ss_pred CCCCCCC---CCccEEEecCCCCc
Q psy14962 82 RTGLLHQ---APFDAIYLSTYVPE 102 (216)
Q Consensus 82 ~~~~~~~---~~~D~i~~~~~~~~ 102 (216)
....... .....|+++.+...
T Consensus 86 l~~~~~~~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEETGTG
T ss_pred hccccHHhhcCCceEEEEEecccc
Confidence 7543322 34567888877643
No 220
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.47 E-value=1e-06 Score=66.93 Aligned_cols=99 Identities=22% Similarity=0.249 Sum_probs=66.0
Q ss_pred EEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCC
Q psy14962 20 VLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTY 99 (216)
Q Consensus 20 vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 99 (216)
|+||||..|++.+.+++.. ...+++++|+++..++.|++++...++ .+++.++.+|......+.+..|.|+...+
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccccCCCCCCCEEEEecC
Confidence 6899999999999999883 334899999999999999999999876 47899999998765544444677776555
Q ss_pred CCc----hHHHHHhcCCCCeEEEEeecC
Q psy14962 100 VPE----IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 100 ~~~----~~~~~~~~L~~gG~lv~~~~~ 123 (216)
-.. ++......++....|+++..+
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred CHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 332 334444455555566665433
No 221
>KOG3045|consensus
Probab=98.46 E-value=8.9e-07 Score=68.13 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=69.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+..+++.+.. ......|.|+|||-+.++. .. ...|+.+|+.+ .+-+++.+|+.
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~---~~kV~SfDL~a--------------------~~~~V~~cDm~ 220 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---SE---RHKVHSFDLVA--------------------VNERVIACDMR 220 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh---cc---ccceeeeeeec--------------------CCCceeecccc
Confidence 3456777762 3445678999999988765 11 23899999632 35678999998
Q ss_pred CCCCCCCCccEEEecCCC-----CchHHHHHhcCCCCeEEEEee
Q psy14962 83 TGLLHQAPFDAIYLSTYV-----PEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~lv~~~ 121 (216)
..+..+++.|+++.+..+ ..++.++.++|++||.+++..
T Consensus 221 ~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 221 NVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred CCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence 888888999999876654 346789999999999999864
No 222
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.45 E-value=2.9e-06 Score=73.71 Aligned_cols=80 Identities=9% Similarity=0.000 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC----
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGK-------TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---- 84 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~-------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 84 (216)
...+|+|.|||+|.+...+++.... ...++++|+++..+..++.++...+ ...+.+...|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-----~~~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-----LLEINVINFNSLSYVLLN 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-----CCCceeeecccccccccc
Confidence 3458999999999999988876521 2478999999999999998876643 12344555553311
Q ss_pred -CCCCCCccEEEecCCC
Q psy14962 85 -LLHQAPFDAIYLSTYV 100 (216)
Q Consensus 85 -~~~~~~~D~i~~~~~~ 100 (216)
....+.||+|+.++|+
T Consensus 106 ~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 106 IESYLDLFDIVITNPPY 122 (524)
T ss_pred cccccCcccEEEeCCCc
Confidence 1112579999999886
No 223
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.4e-06 Score=65.52 Aligned_cols=97 Identities=24% Similarity=0.240 Sum_probs=73.4
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC------
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL------ 86 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------ 86 (216)
.+.++..|+|+|+.+|.++..+++..+++..|+++|+.|-- ...++.++.+|+.....
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCceEEeeeccCccHHHHHHH
Confidence 35789999999999999999999998877789999987632 13568899999864331
Q ss_pred --CCCCccEEEecCCC--------Cc---------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 87 --HQAPFDAIYLSTYV--------PE---------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 87 --~~~~~D~i~~~~~~--------~~---------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
...++|+|++++.- .+ .+.-...+|+|||.+++-+....
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 22457999988764 11 22455579999999999776654
No 224
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.41 E-value=2.6e-06 Score=67.25 Aligned_cols=100 Identities=26% Similarity=0.308 Sum_probs=63.7
Q ss_pred CeEEEEcCCCchHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 18 AKVLDIGSGSGFMS-CVFAELVGKTGRVFGVEHMREQCEDAWETVM-RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 18 ~~vldiG~G~G~~~-~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
.+|+=||||+=-+| +.+++..+++..|+++|.+++..+.+++.+. ..++ ..++.++.+|.......-..||+|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG----SEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhccccccccCCEEE
Confidence 59999999995555 5566655556789999999999999998776 2222 3678999999764433346799999
Q ss_pred ecCCCC-------chHHHHHhcCCCCeEEEEee
Q psy14962 96 LSTYVP-------EIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 96 ~~~~~~-------~~~~~~~~~L~~gG~lv~~~ 121 (216)
...... .++.++.+.++||+.+++-.
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 877764 37899999999999998853
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.40 E-value=3.2e-06 Score=64.18 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=64.3
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------HhCCCCCCCCCeE
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM-------RIRPDLLNDGRLH 75 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~~~~~~~ 75 (216)
+..+++.+. +.+++.++|+|||.|.....++...+ -.+++|+|+.+.....|+.... ..+ ....++.
T Consensus 31 ~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~~v~ 104 (205)
T PF08123_consen 31 VSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPGKVE 104 (205)
T ss_dssp HHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---EEE
T ss_pred HHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccccce
Confidence 345566554 67899999999999999988887654 2369999999998877765332 222 2245678
Q ss_pred EEeccCCCCCCC---CCCccEEEecCCC-C-c---hHHHHHhcCCCCeEEEE
Q psy14962 76 LRCRDGRTGLLH---QAPFDAIYLSTYV-P-E---IPYSILLQLKPGGRLVC 119 (216)
Q Consensus 76 ~~~~d~~~~~~~---~~~~D~i~~~~~~-~-~---~~~~~~~~L~~gG~lv~ 119 (216)
+..+|+...... -...|+|+++... . . .+......||+|.++|.
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 888887643210 1346999998664 2 2 23455577888888764
No 226
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.36 E-value=7.3e-07 Score=74.74 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=61.8
Q ss_pred eEEEEcCCCchHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
.+||+|||+|.++..+..+ +..+..+ |..+..+++|.++.- ...+-..-....+...+.||+|.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleRGv----------pa~~~~~~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALERGV----------PAMIGVLGSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhcCc----------chhhhhhccccccCCccchhhhh
Confidence 5799999999999999887 2222222 555566777665421 11111111234455678999999
Q ss_pred ecCCCCc-------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 96 LSTYVPE-------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 96 ~~~~~~~-------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|....-. ++-++-|+|+|||+++.+-+.-.
T Consensus 187 csrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 187 CSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 8776522 45678899999999999876543
No 227
>KOG2940|consensus
Probab=98.34 E-value=7.2e-07 Score=67.51 Aligned_cols=102 Identities=13% Similarity=0.062 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
.-..++|||||-|++...+.... -.+++.+|.|-.|++.++.. ..++ -......+|-+.....++++|+|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~-qdp~------i~~~~~v~DEE~Ldf~ens~DLii 142 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA-QDPS------IETSYFVGDEEFLDFKENSVDLII 142 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc-CCCc------eEEEEEecchhcccccccchhhhh
Confidence 44689999999999999887662 24899999999999887653 2211 234566777666667789999999
Q ss_pred ecCCCCc------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 96 LSTYVPE------IPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 96 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
++..++| .+.+++..|||+|.|+.+.....+
T Consensus 143 sSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 143 SSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred hhhhhhhhccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 9998876 457888999999999987666543
No 228
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.34 E-value=6.1e-06 Score=62.26 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=80.3
Q ss_pred HHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC
Q psy14962 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH 87 (216)
Q Consensus 8 ~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 87 (216)
..++..++.+.+++|+||-.+++.+.+.+. ++...+++.|+++..++.|.+++.+.++ ..++++..+|.......
T Consensus 8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl~~l~~ 82 (226)
T COG2384 8 TTVANLVKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGLAVLEL 82 (226)
T ss_pred HHHHHHHHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCccccCc
Confidence 334445667888999999999999999987 4556899999999999999999999876 47899999998766666
Q ss_pred CCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEe
Q psy14962 88 QAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~ 120 (216)
++.+|+|+..++-.. ++++-.+.|+.=-+++++
T Consensus 83 ~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 83 EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence 667899877665432 334444444433345554
No 229
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.30 E-value=1.2e-06 Score=64.33 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=73.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
.+.+.|+|+|+|.++...++. .-+|++++.+|.....|.+++.-.| ..|+.++.+|+..... ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCC-----CcceEEEecccccccc--cccceeHH
Confidence 478999999999999988887 2399999999999999999875544 4789999999875544 34788887
Q ss_pred cCCCCc--------hHHHHHhcCCCCeEEEE
Q psy14962 97 STYVPE--------IPYSILLQLKPGGRLVC 119 (216)
Q Consensus 97 ~~~~~~--------~~~~~~~~L~~gG~lv~ 119 (216)
-..-.. .+..+.+.||.++.++=
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 544321 44777788899988764
No 230
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.30 E-value=1.4e-05 Score=64.69 Aligned_cols=109 Identities=13% Similarity=0.210 Sum_probs=74.0
Q ss_pred hcccCCCCCeEEEEcCCCchHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHH-HhCCCCCCCCCeEE--EeccCCC
Q psy14962 10 LEPKIQEGAKVLDIGSGSGFMSCVFAELVGK---TGRVFGVEHMREQCEDAWETVM-RIRPDLLNDGRLHL--RCRDGRT 83 (216)
Q Consensus 10 l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~--~~~d~~~ 83 (216)
++..+.++..++|+|||+|.-+..++..+.. ...++++|+|.++++.+.+.+. ... +.+.+ +++|...
T Consensus 70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------SHVRCAGLLGTYDD 143 (319)
T ss_pred HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC------CCeEEEEEEecHHH
Confidence 3334667889999999999988877766532 3579999999999999999887 321 33444 7777643
Q ss_pred C---CCC---CCCccEEEe-cCCCCc--------hHHHHHh-cCCCCeEEEEeecCC
Q psy14962 84 G---LLH---QAPFDAIYL-STYVPE--------IPYSILL-QLKPGGRLVCGVGKS 124 (216)
Q Consensus 84 ~---~~~---~~~~D~i~~-~~~~~~--------~~~~~~~-~L~~gG~lv~~~~~~ 124 (216)
. ... .....+++. ...+.+ +++.+++ .|+||+.|++.....
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 2 111 123455543 334433 5678888 999999999865433
No 231
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.28 E-value=1.7e-05 Score=62.64 Aligned_cols=90 Identities=22% Similarity=0.207 Sum_probs=70.1
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
|+..+++.+. ..++...+|.--|.|..+..++..+++.++++++|.++.+++.|++.+...+ +++.+++..+
T Consensus 11 Ll~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~F 82 (314)
T COG0275 11 LLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGNF 82 (314)
T ss_pred HHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCcH
Confidence 4567777776 5788899999999999999999998766789999999999999999887643 6888888875
Q ss_pred CCCC-----CCCCCccEEEecCC
Q psy14962 82 RTGL-----LHQAPFDAIYLSTY 99 (216)
Q Consensus 82 ~~~~-----~~~~~~D~i~~~~~ 99 (216)
.... ...+++|.|+.+.+
T Consensus 83 ~~l~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 83 ANLAEALKELGIGKVDGILLDLG 105 (314)
T ss_pred HHHHHHHHhcCCCceeEEEEecc
Confidence 4211 11256788865544
No 232
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.25 E-value=1e-05 Score=64.87 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=71.1
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
|...+++.+. ..++..++|.-+|.|..+..+++.+++ ++|+|+|.++.+++.+++++... ..++.+++++.
T Consensus 8 ll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~nF 78 (305)
T TIGR00006 8 LLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDNF 78 (305)
T ss_pred hHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCCH
Confidence 5667778775 568889999999999999999998754 79999999999999999987653 25788988887
Q ss_pred CCCC-----CCCCCccEEEecCCC
Q psy14962 82 RTGL-----LHQAPFDAIYLSTYV 100 (216)
Q Consensus 82 ~~~~-----~~~~~~D~i~~~~~~ 100 (216)
.... ....++|.|+.+.+.
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEeccC
Confidence 5321 122468999877764
No 233
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.21 E-value=2.9e-06 Score=66.37 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCCchHHHHH-HHHhCCCcEEEEEeCCHHHHHHHHHHHHHhC-------------CCCCC----------
Q psy14962 15 QEGAKVLDIGSGSGFMSCVF-AELVGKTGRVFGVEHMREQCEDAWETVMRIR-------------PDLLN---------- 70 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l-~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-------------~~~~~---------- 70 (216)
..|.++||+|||+-.+...- ++.+ .+++..|..+..++..++.+.+.+ +|...
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 45778999999996553322 2332 279999999999887776654322 00000
Q ss_pred CCCe-EEEeccCCCCCC-C-----CCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEee
Q psy14962 71 DGRL-HLRCRDGRTGLL-H-----QAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 71 ~~~~-~~~~~d~~~~~~-~-----~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~ 121 (216)
...+ .++..|+....+ . ..+||+|++...++. .++++.++|||||.|++..
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0113 377788764332 1 125999998877643 4588899999999999853
No 234
>PRK10742 putative methyltransferase; Provisional
Probab=98.20 E-value=1e-05 Score=62.58 Aligned_cols=92 Identities=22% Similarity=0.208 Sum_probs=68.0
Q ss_pred HHHHhcccCCCCC--eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CCC---CCCeEEEec
Q psy14962 6 IIELLEPKIQEGA--KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD-LLN---DGRLHLRCR 79 (216)
Q Consensus 6 ~~~~l~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~~ 79 (216)
+++.+. +++|. +|||+.+|+|..+..++.. ++.|+++|.++......++.+.....+ ... ..+++++.+
T Consensus 78 l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 445554 56776 8999999999999999987 558999999999988888877763110 011 146888888
Q ss_pred cCCCCCC-CCCCccEEEecCCCCc
Q psy14962 80 DGRTGLL-HQAPFDAIYLSTYVPE 102 (216)
Q Consensus 80 d~~~~~~-~~~~~D~i~~~~~~~~ 102 (216)
|...... ....||+|+.+.++++
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCC
Confidence 8753332 1246999999999876
No 235
>KOG1596|consensus
Probab=98.18 E-value=1e-05 Score=61.79 Aligned_cols=107 Identities=23% Similarity=0.337 Sum_probs=79.8
Q ss_pred ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CC
Q psy14962 12 PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQ 88 (216)
Q Consensus 12 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~ 88 (216)
.+++||.+||-+|+++|....++.--++|..-||++|.++..-......+.+ ..|+.-+..|+..... .-
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARHPAKYRMLV 224 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCCchheeeee
Confidence 3689999999999999999999999999999999999888643332222222 2677788888764321 11
Q ss_pred CCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 89 APFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 89 ~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+-.|+||++-+-+. +.-+....||+||-+++++-...
T Consensus 225 gmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikanc 265 (317)
T KOG1596|consen 225 GMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKANC 265 (317)
T ss_pred eeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEeccc
Confidence 46899999877655 23466789999999999876553
No 236
>KOG4589|consensus
Probab=98.14 E-value=1e-05 Score=59.46 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=66.9
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCC------
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGL------ 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~------ 85 (216)
.+.|+++|||+||.+|.++....++.+|.+.|.|+|+-+-. .+..+.++.+ |+.+..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------------p~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------------PPEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------------CCCCcccccccccCCHHHHHHHH
Confidence 35789999999999999999999999898999999964321 0223444444 443211
Q ss_pred --CCCCCccEEEecCCCCc-----------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 86 --LHQAPFDAIYLSTYVPE-----------------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 86 --~~~~~~D~i~~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.+....|+|++++.-.. .+.-....++|+|.+++-.+...
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 23467899988766311 11223367889999999877664
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.13 E-value=1.4e-05 Score=64.63 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
+.+|.++||+||++|.++..+++. +.+|+++|..+ +- . .+.. .+++.....|.....+..+.+|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~---~-~L~~-------~~~V~h~~~d~fr~~p~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MA---Q-SLMD-------TGQVEHLRADGFKFRPPRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cC---H-hhhC-------CCCEEEEeccCcccCCCCCCCCE
Confidence 468999999999999999999988 45999999544 21 1 1222 36788888887654433568999
Q ss_pred EEecCCCCc--hHHHHHhcCCCC
Q psy14962 94 IYLSTYVPE--IPYSILLQLKPG 114 (216)
Q Consensus 94 i~~~~~~~~--~~~~~~~~L~~g 114 (216)
++|+....- +...+.+.|..|
T Consensus 274 vVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 274 LVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEEecccCHHHHHHHHHHHHhcC
Confidence 999988643 446666666655
No 238
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.13 E-value=4.3e-05 Score=60.97 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCeEEEEcCCCch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCCCeEEEeccCC----CCC-CCCC
Q psy14962 17 GAKVLDIGSGSGF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-RPDLLNDGRLHLRCRDGR----TGL-LHQA 89 (216)
Q Consensus 17 ~~~vldiG~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~----~~~-~~~~ 89 (216)
.-++||||+|.-. +.+..++.. +.+++|+|+++..++.|++++..+ ++ ..+|.++...-. ... ...+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~~~~~~~~i~~~i~~~~e 176 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNL----ESRIELRKQKNPDNIFDGIIQPNE 176 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--ST-SSTTTSTT--S
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEEEcCCccccchhhhcccc
Confidence 4579999999954 455555554 689999999999999999999987 55 367888765422 111 1236
Q ss_pred CccEEEecCCCCchHHHH
Q psy14962 90 PFDAIYLSTYVPEIPYSI 107 (216)
Q Consensus 90 ~~D~i~~~~~~~~~~~~~ 107 (216)
.||+.+|+.++....+++
T Consensus 177 ~~dftmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 177 RFDFTMCNPPFYSSQEEA 194 (299)
T ss_dssp -EEEEEE-----SS----
T ss_pred eeeEEecCCccccChhhh
Confidence 899999999997755443
No 239
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.12 E-value=9.1e-07 Score=66.07 Aligned_cols=92 Identities=29% Similarity=0.280 Sum_probs=59.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--------CCC--
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--------GLL-- 86 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--------~~~-- 86 (216)
+.+|||+||++|.++..++++.++...|+|+|+.+.. . ..++..+.+|... ...
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-------~~~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-------LQNVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S--------TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-------ccceeeeecccchhhHHHhhhhhccc
Confidence 4899999999999999999986445799999988761 0 1344555555421 111
Q ss_pred CCCCccEEEecCCCCc-----------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 87 HQAPFDAIYLSTYVPE-----------------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
....+|+|+++..... .+..+.+.|+|||.+++-....
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 1258999999984311 1234457899999999977664
No 240
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.11 E-value=6.9e-05 Score=53.62 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELV---GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF 91 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 91 (216)
.+...|+|+|||.|+++..++..+ .++.+|+++|.++...+.+.++....+. ....+..+...+...... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS--DLEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc--hhhccchhhccchhhhcc-cCCC
Confidence 567899999999999999999833 2456999999999999999888776441 011344555544332211 3345
Q ss_pred cEEEe
Q psy14962 92 DAIYL 96 (216)
Q Consensus 92 D~i~~ 96 (216)
++++.
T Consensus 101 ~~~vg 105 (141)
T PF13679_consen 101 DILVG 105 (141)
T ss_pred eEEEE
Confidence 66654
No 241
>KOG2198|consensus
Probab=98.09 E-value=3.4e-05 Score=62.56 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=78.9
Q ss_pred HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKT---GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
++.-+...++||.+|||.|+.+|.-+..+.+.+... +.|++-|.++..+........... ..+..+...|..
T Consensus 145 mlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-----~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 145 MLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-----SPNLLVTNHDAS 219 (375)
T ss_pred ccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-----Ccceeeecccce
Confidence 343444568999999999999999998888776422 378999999998877776664321 234444444432
Q ss_pred CCC---------CCCCCccEEEecCCCCc-----------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 83 TGL---------LHQAPFDAIYLSTYVPE-----------------------------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 83 ~~~---------~~~~~~D~i~~~~~~~~-----------------------------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
... .....||-|+++.+-.. ++.+-.+.||+||.+|.++.+.
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred eccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 111 12346999998776310 2356668999999999998776
Q ss_pred C
Q psy14962 125 K 125 (216)
Q Consensus 125 ~ 125 (216)
.
T Consensus 300 n 300 (375)
T KOG2198|consen 300 N 300 (375)
T ss_pred C
Confidence 4
No 242
>KOG1331|consensus
Probab=98.08 E-value=4.8e-06 Score=65.12 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=75.0
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
....+..++|+|||.|..+. ..|...++|+|.+...+..+++. +...+..+|+...+..+.+||
T Consensus 42 ~~~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~-----------~~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 42 SQPTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS-----------GGDNVCRADALKLPFREESFD 105 (293)
T ss_pred ccCCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC-----------CCceeehhhhhcCCCCCCccc
Confidence 34568899999999997743 23556899999999888777642 122678889888887788999
Q ss_pred EEEecCCCCch---------HHHHHhcCCCCeEEEEeecCC
Q psy14962 93 AIYLSTYVPEI---------PYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 93 ~i~~~~~~~~~---------~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.+++...++++ ++++.++++|||...+.++..
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 99999998874 478889999999988877654
No 243
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.04 E-value=2.6e-05 Score=55.71 Aligned_cols=58 Identities=26% Similarity=0.192 Sum_probs=47.4
Q ss_pred eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
+++|+|||.|..+..+++.. +..+++++|+++.+.+.+++++..++. .++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~-----~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL-----PNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEEeeee
Confidence 48999999999999998874 456899999999999999999887542 45777776643
No 244
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=2.3e-05 Score=58.05 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
...|++|||+|+|+|..++..++.. ...|++.|+++...+..+-+.+.++ .++.+...|... +...||+
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~g---~~~~~Dl 145 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLIG---SPPAFDL 145 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhcc------ceeEEeeccccC---CCcceeE
Confidence 3468999999999999999988874 3489999999988888887877765 567888888654 3557999
Q ss_pred EEecCCCCc------hHHHHHhcCCC-CeEEEEeecCC
Q psy14962 94 IYLSTYVPE------IPYSILLQLKP-GGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~~------~~~~~~~~L~~-gG~lv~~~~~~ 124 (216)
++.+..+.. ++. ....++. |..+++-.++.
T Consensus 146 ~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 146 LLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred EEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 998877633 223 4444444 54555444444
No 245
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.01 E-value=5.5e-05 Score=61.37 Aligned_cols=97 Identities=24% Similarity=0.232 Sum_probs=73.3
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-CCCCCCCCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-GRTGLLHQAP 90 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~ 90 (216)
.+.||++|+-+|+|- |.++..+|+..+ ++|+++|.+++-++.|++..+. .++... ......-.+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~~~~ 229 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAVKEI 229 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHhHhh
Confidence 468999999999974 788899999864 6999999999999988876332 233322 1111111124
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEeecC
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
+|+|+...+ ...+....+.|++||++++.=..
T Consensus 230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 230 ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 999999999 88889999999999999987544
No 246
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.00 E-value=0.00014 Score=51.93 Aligned_cols=99 Identities=28% Similarity=0.318 Sum_probs=67.0
Q ss_pred EEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCC-eEEEeccCCC--CCCCC-CCccEEE
Q psy14962 20 VLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR-LHLRCRDGRT--GLLHQ-APFDAIY 95 (216)
Q Consensus 20 vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~--~~~~~-~~~D~i~ 95 (216)
++|+|||+|... .++........++++|.++.++..+...... . ... +.+...|... ..... ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A-----GLGLVDFVVADALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-----CCCceEEEEeccccCCCCCCCCCceeEEe
Confidence 999999999977 3444322113789999999999885544322 1 111 5777777654 23333 4799994
Q ss_pred ecCCC-----CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 96 LSTYV-----PEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 96 ~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
..... ......+.+.++|+|.+++......
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 44433 3466889999999999999877654
No 247
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.96 E-value=7.8e-05 Score=59.40 Aligned_cols=48 Identities=25% Similarity=0.152 Sum_probs=38.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (216)
...+|||+|||+|..+..+....+.-.+++++|.|+.|++.++..+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 346899999999988777766665345899999999999999887654
No 248
>KOG3178|consensus
Probab=97.96 E-value=6.8e-05 Score=60.48 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=71.5
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS 97 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 97 (216)
...+|+|.|.|..+..+..++ | ++-+++.+...+..+...+. . .+..+.+|+....++ -|+|++-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~--------gV~~v~gdmfq~~P~---~daI~mk 243 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-P--------GVEHVAGDMFQDTPK---GDAIWMK 243 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-C--------CcceecccccccCCC---cCeEEEE
Confidence 678999999999999888864 4 78899998888777666543 2 377888898766433 3699988
Q ss_pred CCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962 98 TYVPE--------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 98 ~~~~~--------~~~~~~~~L~~gG~lv~~~~ 122 (216)
..+++ +++++++.|+|+|.+++...
T Consensus 244 WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred eecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 88765 56899999999999998755
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.95 E-value=1.6e-06 Score=58.86 Aligned_cols=95 Identities=24% Similarity=0.349 Sum_probs=39.0
Q ss_pred EEEcCCCchHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCccEEEe
Q psy14962 21 LDIGSGSGFMSCVFAELVGKTG--RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPFDAIYL 96 (216)
Q Consensus 21 ldiG~G~G~~~~~l~~~~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~i~~ 96 (216)
||+|+..|..+..+++...+.. +++++|..+. .+.+.+.+++.++ ..+++++.++...... ..+++|+++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~----~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL----SDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC----CCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6899999999999887765443 7999999995 2223333333222 3579999998753221 1368999999
Q ss_pred cCCCCc-----hHHHHHhcCCCCeEEEEe
Q psy14962 97 STYVPE-----IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 97 ~~~~~~-----~~~~~~~~L~~gG~lv~~ 120 (216)
+..... .+..+...|+|||.+++.
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 987422 447788899999999874
No 250
>KOG1269|consensus
Probab=97.92 E-value=3.9e-05 Score=63.13 Aligned_cols=106 Identities=24% Similarity=0.249 Sum_probs=83.0
Q ss_pred cccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962 11 EPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP 90 (216)
Q Consensus 11 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (216)
.....++..++|+|||-|......+... ...++|+|.++..+..+.......++ ..+..+...|....+.+++.
T Consensus 105 ~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l----~~k~~~~~~~~~~~~fedn~ 178 (364)
T KOG1269|consen 105 RESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYL----DNKCNFVVADFGKMPFEDNT 178 (364)
T ss_pred hhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHh----hhhcceehhhhhcCCCCccc
Confidence 3356788899999999999998888774 45899999999988888776655442 13345677888777778889
Q ss_pred ccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962 91 FDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 91 ~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~ 122 (216)
||.+.+.....+ ...++.++++|||.++....
T Consensus 179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 999987766544 55899999999999998653
No 251
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00014 Score=55.66 Aligned_cols=99 Identities=27% Similarity=0.213 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCC--CCCCc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLL--HQAPF 91 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~--~~~~~ 91 (216)
.+|..+||+|+.||.++..+++..+ ..|+++|..-..+..--+ . ..++.... .++..... -.+..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR---~-------d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLR---N-------DPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHh---c-------CCcEEEEecCChhhCCHHHcccCC
Confidence 4688999999999999999988843 499999998876543222 1 23443332 33321111 12367
Q ss_pred cEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 92 DAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 92 D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|+++++..+.. ++..+..++++++.++..+-+++
T Consensus 146 d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQF 182 (245)
T COG1189 146 DLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQF 182 (245)
T ss_pred CeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchh
Confidence 89998888755 56888999999999998776664
No 252
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.90 E-value=0.00016 Score=59.76 Aligned_cols=100 Identities=24% Similarity=0.256 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCC---CCCCCCC
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGR---TGLLHQA 89 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~---~~~~~~~ 89 (216)
.++.+|+-+|||+ |.++..+++..+ ...|+++|.++..++.|++.... ..+..... +.. .......
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHHHHHHhCCC
Confidence 4555999999999 999988888875 35899999999999999885322 11111111 100 0111123
Q ss_pred CccEEEecCCCCchHHHHHhcCCCCeEEEEeecC
Q psy14962 90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
.+|+++...+....+..+.+.++|||.+++.-..
T Consensus 238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 6999999999888889999999999999876443
No 253
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.89 E-value=0.00018 Score=56.73 Aligned_cols=99 Identities=24% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---hC--------------------------C-
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR---IR--------------------------P- 66 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~---~~--------------------------~- 66 (216)
..+||--|||.|.++..+|.. +..+.|.|.|--|+-..+-.+.. .+ .
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 468999999999999999998 56999999999987544432221 00 0
Q ss_pred -----CCCCCCCeEEEeccCCCCCCCC---CCccEEEecCCCC------chHHHHHhcCCCCeEEE
Q psy14962 67 -----DLLNDGRLHLRCRDGRTGLLHQ---APFDAIYLSTYVP------EIPYSILLQLKPGGRLV 118 (216)
Q Consensus 67 -----~~~~~~~~~~~~~d~~~~~~~~---~~~D~i~~~~~~~------~~~~~~~~~L~~gG~lv 118 (216)
......+.....+|+....... ++||+|+...-+. ..++.+.++|||||+.+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 0112345677777776544433 7899998764432 24588999999999544
No 254
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.83 E-value=0.0014 Score=50.60 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC--CCccE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~ 93 (216)
.|++||-+|=+- ..++.++.. +...+|+.+|+++..++..++.+.+.|+ +++....|+....++. ++||+
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL------PIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTTSS-BSE
T ss_pred cCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEEEecccccCCHHHhcCCCE
Confidence 688999998443 223333332 3346999999999999999999988773 4999999998776654 89999
Q ss_pred EEecCCCCc-----hHHHHHhcCCCCe-EEEEeecCCC
Q psy14962 94 IYLSTYVPE-----IPYSILLQLKPGG-RLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~~~-----~~~~~~~~L~~gG-~lv~~~~~~~ 125 (216)
++.+++..- ++.+....||..| ..++...+..
T Consensus 116 f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 116 FFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp EEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 999999743 4566667777755 6566555543
No 255
>KOG1709|consensus
Probab=97.81 E-value=0.00023 Score=53.64 Aligned_cols=98 Identities=21% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 92 (216)
.+|.+||++|-|-|.....+.++ .| ..-+.+|.+|..++..+..... ...|+.++.+-.++.. .+++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCcc
Confidence 57899999999999998887776 33 3667789999998877765432 2367777776655332 2356799
Q ss_pred EEEecCCCC------chHHHHHhcCCCCeEEEEe
Q psy14962 93 AIYLSTYVP------EIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 93 ~i~~~~~~~------~~~~~~~~~L~~gG~lv~~ 120 (216)
.|+-+.-.+ ++...+.++|||+|.+-+.
T Consensus 172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 999876533 2447888999999998653
No 256
>KOG0024|consensus
Probab=97.80 E-value=0.00012 Score=58.43 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=75.2
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-----cCC---C
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-----DGR---T 83 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~---~ 83 (216)
.+++|.+||-+|+|+ |..+...|+.++ ..+|+.+|+++..++.|++.-.. .+..... +.. .
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~~Ga~---------~~~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKKFGAT---------VTDPSSHKSSPQELAELVE 235 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHHhCCe---------EEeeccccccHHHHHHHHH
Confidence 467899999999999 999999999986 35999999999999999983221 1111111 100 1
Q ss_pred CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 84 GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.......+|+.|.....+...+.....+++||.+++.-...
T Consensus 236 ~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred hhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCC
Confidence 11122459999999999998899999999999977754433
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.71 E-value=0.00035 Score=54.13 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=62.0
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT 83 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (216)
..+.+.+...+.+..+|+|||||.--++...... .++..++|+|++..+++.....+...+ .+.++...|...
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLS 165 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeec
Confidence 3445555555667889999999998887665543 345799999999999999998877754 467788888765
Q ss_pred CCCCCCCccEEEecCCCCc
Q psy14962 84 GLLHQAPFDAIYLSTYVPE 102 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~~ 102 (216)
..+ ....|+.+.--.++-
T Consensus 166 ~~~-~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 166 DPP-KEPADLALLLKTLPC 183 (251)
T ss_dssp SHT-TSEESEEEEET-HHH
T ss_pred cCC-CCCcchhhHHHHHHH
Confidence 533 456899998766654
No 258
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00025 Score=52.63 Aligned_cols=39 Identities=28% Similarity=0.632 Sum_probs=33.9
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCH
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMR 51 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (216)
.+++|.+|+|+=.|.|+++..++..+++.+.|++.-..+
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 468999999999999999999999999888898874433
No 259
>KOG2730|consensus
Probab=97.59 E-value=7.2e-05 Score=56.47 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCc
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPF 91 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~ 91 (216)
....|+|..||-|.-++.++.. +..|+++|++|.-+..|+++++--|. ++++.|+++|+.+... ....+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~ld~~~~lq~~K~~~ 166 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFLDLASKLKADKIKY 166 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecC----CceeEEEechHHHHHHHHhhhhhee
Confidence 4468999999999999888887 34899999999999999999887775 4799999999864321 22346
Q ss_pred cEEEecCCC
Q psy14962 92 DAIYLSTYV 100 (216)
Q Consensus 92 D~i~~~~~~ 100 (216)
|.|+...+.
T Consensus 167 ~~vf~sppw 175 (263)
T KOG2730|consen 167 DCVFLSPPW 175 (263)
T ss_pred eeeecCCCC
Confidence 788877775
No 260
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.55 E-value=0.00033 Score=57.52 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCCCCCCCCCc
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRTGLLHQAPF 91 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~ 91 (216)
..++++|+-.|||. |..+..+++..+. ..|+++|.+++.++.+++.-. +.+ .....+........+.+
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~lGa---------~~vi~~~~~~~~~~~~~~g~~ 236 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLAREMGA---------DKLVNPQNDDLDHYKAEKGYF 236 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHcCC---------cEEecCCcccHHHHhccCCCC
Confidence 34789999999987 8888888888642 268999999998887765311 111 10011111111112358
Q ss_pred cEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 92 DAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
|+|+...+.........+.|++||+++..-
T Consensus 237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 999988776667788889999999998753
No 261
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.54 E-value=0.00017 Score=57.90 Aligned_cols=90 Identities=23% Similarity=0.234 Sum_probs=63.2
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
|+..+++.+. ..++..++|.-.|.|..+..+++..++ ++++|+|.++.+++.|++++... .+++.++..++
T Consensus 8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~F 78 (310)
T PF01795_consen 8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF------DDRFIFIHGNF 78 (310)
T ss_dssp THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-G
T ss_pred cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc------cceEEEEeccH
Confidence 6677888886 578889999999999999999998765 79999999999999998876542 36888998886
Q ss_pred CCCC-----C-CCCCccEEEecCCC
Q psy14962 82 RTGL-----L-HQAPFDAIYLSTYV 100 (216)
Q Consensus 82 ~~~~-----~-~~~~~D~i~~~~~~ 100 (216)
.... . ....+|.|+.+.+.
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHHHccCCCccCEEEEcccc
Confidence 4211 1 23579999887774
No 262
>KOG3115|consensus
Probab=97.51 E-value=0.00049 Score=51.42 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=66.8
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--CCCCCeEEEeccCCCCCC---CCCCcc
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL--LNDGRLHLRCRDGRTGLL---HQAPFD 92 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~---~~~~~D 92 (216)
-.+.|||||-|.+.+.++..+ |+..++|+|+--..-+..+++....+..+ -.-.|+.+...+.....+ ..++.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 458999999999999999986 57799999998888888888766533110 112455666655543221 123322
Q ss_pred EEEecCCCCc--------------hHHHHHhcCCCCeEEEEeec
Q psy14962 93 AIYLSTYVPE--------------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 93 ~i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~ 122 (216)
-.+...+-++ ++....-+|++||.++..+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 2332222222 34566678999999988643
No 263
>KOG2671|consensus
Probab=97.48 E-value=0.0003 Score=56.64 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=61.2
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHH-------HHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCED-------AWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
.+.+|+.|.|--.|||.+....++. ++.|+|.|++-.++.. .+.++++-+.+ ..-+.++.+|....+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~sn~~ 278 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADFSNPP 278 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecccCcc
Confidence 3689999999999999998888877 5699999999888762 33455554421 233567888876444
Q ss_pred -CCCCCccEEEecCCC
Q psy14962 86 -LHQAPFDAIYLSTYV 100 (216)
Q Consensus 86 -~~~~~~D~i~~~~~~ 100 (216)
.....||.|+|+.+.
T Consensus 279 ~rsn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPPY 294 (421)
T ss_pred hhhcceeeEEEeCCCc
Confidence 345689999999984
No 264
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.46 E-value=0.0002 Score=54.16 Aligned_cols=84 Identities=20% Similarity=0.113 Sum_probs=59.9
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CCCCccEE
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQAPFDAI 94 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~i 94 (216)
.++|||||=+......... -..|+.||+++. ...+...|+...+. +.+.||+|
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~--------------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ--------------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCC--------------------CCCceeeccccCCCCCCcccceeEE
Confidence 5899999986554333222 237999998762 23456677664433 35789999
Q ss_pred EecCCCCc---------hHHHHHhcCCCCeE-----EEEeecCCC
Q psy14962 95 YLSTYVPE---------IPYSILLQLKPGGR-----LVCGVGKSK 125 (216)
Q Consensus 95 ~~~~~~~~---------~~~~~~~~L~~gG~-----lv~~~~~~~ 125 (216)
.++.++.. ++..+.+.|+|+|. ++++.+.+.
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 99888744 56888999999999 888877774
No 265
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.45 E-value=0.00044 Score=48.97 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=53.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCCCCCCccEEEecCCC-C----c----------hHH
Q psy14962 43 RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLLHQAPFDAIYLSTYV-P----E----------IPY 105 (216)
Q Consensus 43 ~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~i~~~~~~-~----~----------~~~ 105 (216)
+|+++|+.+++++..++++.+.++ ..++.++..+=+. ...+.+++|+++-+.+. + . .++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL----EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC----CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 589999999999999999998764 3578888765332 12223579999877664 1 1 347
Q ss_pred HHHhcCCCCeEEEEeecCC
Q psy14962 106 SILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 106 ~~~~~L~~gG~lv~~~~~~ 124 (216)
.+.+.|+|||.+++.+...
T Consensus 77 ~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHEEEEEEEEEEE--S
T ss_pred HHHHhhccCCEEEEEEeCC
Confidence 8889999999998877543
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.43 E-value=0.00069 Score=52.24 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=50.5
Q ss_pred HHHHhcccCCCC--CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCC----CCCeEEEec
Q psy14962 6 IIELLEPKIQEG--AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLN----DGRLHLRCR 79 (216)
Q Consensus 6 ~~~~l~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~ 79 (216)
+++.+. ++++ .+|||.-+|-|..+..++.. +++|+++|.||-.....+..+.....+... ..+++++.+
T Consensus 65 l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 65 LAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHTT---BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 344443 4454 48999999999999998864 459999999998765555433321100000 147899999
Q ss_pred cCCCCCC-CCCCccEEEecCCCCc
Q psy14962 80 DGRTGLL-HQAPFDAIYLSTYVPE 102 (216)
Q Consensus 80 d~~~~~~-~~~~~D~i~~~~~~~~ 102 (216)
|...... ...+||+|+.+.++++
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 9875433 3578999999999865
No 267
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.42 E-value=0.0027 Score=54.81 Aligned_cols=94 Identities=23% Similarity=0.239 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----------
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---------- 83 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---------- 83 (216)
.++.+|+-+|||. |..++..++..| +.|+++|.+++.++.+++.- .++...+...
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslG------------A~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMG------------AEFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC------------CeEEEeccccccccccchhh
Confidence 4789999999999 889999999875 48999999999998887631 1211111100
Q ss_pred ----C-------C-CC-CCCccEEEecCCCCc-----h-HHHHHhcCCCCeEEEEeec
Q psy14962 84 ----G-------L-LH-QAPFDAIYLSTYVPE-----I-PYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 84 ----~-------~-~~-~~~~D~i~~~~~~~~-----~-~~~~~~~L~~gG~lv~~~~ 122 (216)
. . .. ...+|+|+.....+. + .+++.+.+||||.++..-.
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 0 00 135899999887633 4 4899999999999877644
No 268
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.40 E-value=0.003 Score=54.49 Aligned_cols=117 Identities=24% Similarity=0.290 Sum_probs=83.3
Q ss_pred HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec
Q psy14962 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK---TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR 79 (216)
Q Consensus 3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (216)
+..|++.+.+ .+..+|+|-.||+|.+.....+.++. ...++|.|.++..+..|+-++--++.+ .++....+
T Consensus 175 ~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~----~~~~i~~~ 248 (489)
T COG0286 175 SELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE----GDANIRHG 248 (489)
T ss_pred HHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC----cccccccc
Confidence 3445555542 57779999999999998888777642 257999999999999999988776641 13456666
Q ss_pred cCCCCCC-----CCCCccEEEecCCCC---------c----------------------hHHHHHhcCCCCeEEEEeecC
Q psy14962 80 DGRTGLL-----HQAPFDAIYLSTYVP---------E----------------------IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 80 d~~~~~~-----~~~~~D~i~~~~~~~---------~----------------------~~~~~~~~L~~gG~lv~~~~~ 123 (216)
|....+. ..+.||.|+++.++. . ++.++...|+|||+.-+..++
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 6543332 226799999988862 0 236778999999887777766
Q ss_pred CC
Q psy14962 124 SK 125 (216)
Q Consensus 124 ~~ 125 (216)
..
T Consensus 329 gv 330 (489)
T COG0286 329 GV 330 (489)
T ss_pred Cc
Confidence 63
No 269
>PRK11524 putative methyltransferase; Provisional
Probab=97.31 E-value=0.00098 Score=53.44 Aligned_cols=56 Identities=23% Similarity=0.118 Sum_probs=45.2
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (216)
|+.+++.... .+|+.|||..||+|..+.+..+. +-+.+|+|++++..+.|++++..
T Consensus 197 L~erlI~~~S---~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILASS---NPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 3445555543 78999999999999998876665 45999999999999999999754
No 270
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.28 E-value=0.0033 Score=49.43 Aligned_cols=103 Identities=23% Similarity=0.179 Sum_probs=62.1
Q ss_pred CeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CC----CC
Q psy14962 18 AKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LH----QA 89 (216)
Q Consensus 18 ~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~----~~ 89 (216)
.-+||||||- -..+.++++...|+++|+-+|.+|-.+..++..+.... .....++.+|+.... .. .+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcCHHHHh
Confidence 3599999997 33567788888899999999999999999988876631 123789999986311 00 01
Q ss_pred Ccc-----EEEecCCCCc---------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 90 PFD-----AIYLSTYVPE---------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 90 ~~D-----~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
-+| .++....+++ ++..+...|.||++|+++..+..
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 222 3344444433 45788899999999999876553
No 271
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.28 E-value=0.0021 Score=53.08 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=63.6
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCC
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEH---MREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQA 89 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 89 (216)
..++.+|+-+|+|. |.++..+++..+ .+|++++. ++..++.+++. | ...+.....+... ....+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~----G-----a~~v~~~~~~~~~-~~~~~ 237 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEEL----G-----ATYVNSSKTPVAE-VKLVG 237 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHc----C-----CEEecCCccchhh-hhhcC
Confidence 35789999999988 888888888864 48999986 56666655432 1 1111111111111 11124
Q ss_pred CccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.+|+|+........+....+.|+++|.+++.
T Consensus 238 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 238 EFDLIIEATGVPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCCEEEECcCCHHHHHHHHHHccCCcEEEEE
Confidence 6999999887766778889999999998764
No 272
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=97.26 E-value=0.0026 Score=52.29 Aligned_cols=91 Identities=10% Similarity=0.075 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
+++|++||-+|||+ |.++..++++.....+|+++|.+++.++.+++ +. .. ....+. .....+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~----------~~-~~~~~~----~~~~g~d 224 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD----------ET-YLIDDI----PEDLAVD 224 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC----------ce-eehhhh----hhccCCc
Confidence 46799999999987 77777777753223589999999988877754 11 11 111111 1112489
Q ss_pred EEEecCC---CCchHHHHHhcCCCCeEEEEe
Q psy14962 93 AIYLSTY---VPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 93 ~i~~~~~---~~~~~~~~~~~L~~gG~lv~~ 120 (216)
+|+-..+ ....+....+.|+++|++++.
T Consensus 225 ~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 225 HAFECVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred EEEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 9997665 345678888999999999875
No 273
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.16 E-value=0.0015 Score=54.35 Aligned_cols=104 Identities=24% Similarity=0.234 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccEE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i 94 (216)
.+.+|||.=+|+|.=++..++.++....|+.-|+|++.++..++++..++++ ..++.+.+.|+.... .....||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~---~~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE---DERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S---GCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc---CceEEEehhhHHHHhhhccccCCEE
Confidence 4568999999999999999988644458999999999999999999887752 125788888876433 246789999
Q ss_pred EecCCC-C-chHHHHHhcCCCCeEEEEeec
Q psy14962 95 YLSTYV-P-EIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 95 ~~~~~~-~-~~~~~~~~~L~~gG~lv~~~~ 122 (216)
=.+.-- + .+++...+.++.||.+.++..
T Consensus 126 DlDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 126 DLDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EE--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred EeCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 776443 2 367888999999999999753
No 274
>KOG2352|consensus
Probab=97.13 E-value=0.0036 Score=52.86 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=76.4
Q ss_pred cCCCCC-eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962 13 KIQEGA-KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF 91 (216)
Q Consensus 13 ~~~~~~-~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 91 (216)
++.+-. +++.+|||.-.+...+-+.. ...|+.+|.|+-.++....+.... ..-..+...|+.....++++|
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~------~~~~~~~~~d~~~l~fedESF 115 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKE------RPEMQMVEMDMDQLVFEDESF 115 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccC------CcceEEEEecchhccCCCcce
Confidence 455666 99999999998877776652 348999999999888776654321 245788888988777778899
Q ss_pred cEEEecCCCCc----------------hHHHHHhcCCCCeEEEEeec
Q psy14962 92 DAIYLSTYVPE----------------IPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 92 D~i~~~~~~~~----------------~~~~~~~~L~~gG~lv~~~~ 122 (216)
|+|+.-..+.. .+..++++|++||+++....
T Consensus 116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99987666533 34688899999999766554
No 275
>KOG3201|consensus
Probab=97.07 E-value=0.00029 Score=50.72 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=69.7
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCCCCCCc
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLLHQAPF 91 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~ 91 (216)
..|.+||++|.|. |..++.+|... +...|...|-+++.+...++....+-. ....++.++.-+... ......+|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCcc
Confidence 3578899999998 55556666654 556899999999998877765443210 112333333222211 11223589
Q ss_pred cEEEecCCC------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962 92 DAIYLSTYV------PEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 92 D~i~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|+|++...+ ..+.+.++.+|+|.|..++..|-.
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 999987664 235688999999999987765554
No 276
>KOG1501|consensus
Probab=97.05 E-value=0.0027 Score=52.92 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=48.1
Q ss_pred eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG 81 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 81 (216)
.|||+|+|||.+++..++..+. .|+++|.-..|.+.|++...++|+ .++++++...-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkrS 125 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGM----SDKINVINKRS 125 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCC----ccceeeecccc
Confidence 4799999999999988888543 899999999999999999888876 47787776543
No 277
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=97.04 E-value=0.01 Score=48.57 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=63.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF 91 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 91 (216)
.+++|++||-.|+|. |..+..+++.. +++|++++.+++.++.+++.-. +. ++... .. ..+.+
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga---------~~--vi~~~--~~--~~~~~ 224 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGA---------AS--AGGAY--DT--PPEPL 224 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCC---------ce--ecccc--cc--Ccccc
Confidence 467899999999876 77777888875 4589999999888777765321 11 11100 01 12357
Q ss_pred cEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 92 DAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
|+++........+....+.|+++|++++.-
T Consensus 225 d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 225 DAAILFAPAGGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred eEEEECCCcHHHHHHHHHhhCCCcEEEEEe
Confidence 887766655667788889999999997753
No 278
>PRK13699 putative methylase; Provisional
Probab=97.03 E-value=0.0034 Score=48.58 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (216)
-.+|+.|||.-||+|..+....+. +.+.+|+|++++..+.+.+++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHH
Confidence 368999999999999998876665 45899999999999999998766
No 279
>KOG1562|consensus
Probab=96.86 E-value=0.0054 Score=48.62 Aligned_cols=105 Identities=21% Similarity=0.164 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 92 (216)
...++|+-||.|-|......+++ ..-..+..+|++...++..++.+..--. ....+++.+..+|..... .+.++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~-gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLAC-GYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhc-ccCCCceEEEeccHHHHHHHhccCCce
Confidence 45679999999999999988887 2234789999999999888887654111 133578889999875322 2467899
Q ss_pred EEEecCCCCc----------hHHHHHhcCCCCeEEEEee
Q psy14962 93 AIYLSTYVPE----------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 93 ~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~ 121 (216)
+|+....-+. ....+.+.||+||+++.+.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9997655432 3478889999999998864
No 280
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.86 E-value=0.012 Score=48.56 Aligned_cols=97 Identities=22% Similarity=0.155 Sum_probs=65.6
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCC---CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRT---GL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~ 85 (216)
.+.++++||-.|+|. |..+..+++..+. ..|+++|.+++..+.+++. | .+ .++.. +... ..
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~~----G-----a~--~~i~~~~~~~~~~i~~~ 240 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAREF----G-----AT--HTVNSSGTDPVEAIRAL 240 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc----C-----Cc--eEEcCCCcCHHHHHHHH
Confidence 467899999999877 8888888888642 2599999999888877542 1 11 11211 1100 01
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.....+|+|+-............+.++++|++++.-
T Consensus 241 ~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 241 TGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEC
Confidence 122358999987766666777889999999998753
No 281
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.85 E-value=0.0068 Score=49.07 Aligned_cols=88 Identities=18% Similarity=0.196 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
.++.+|+-+|||. |.++..+++..+. ..|+++|.++..++.+... .++ |.... ....+|+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~--------------~~i--~~~~~--~~~g~Dv 203 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGY--------------EVL--DPEKD--PRRDYRA 203 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc--------------ccc--Chhhc--cCCCCCE
Confidence 4578899999988 8888888888642 2467788888776655421 011 10000 1345899
Q ss_pred EEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 94 IYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
|+-..+....+....+.|+++|++++.-
T Consensus 204 vid~~G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 204 IYDASGDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EEECCCCHHHHHHHHHhhhcCcEEEEEe
Confidence 9988887777788899999999998753
No 282
>PHA01634 hypothetical protein
Probab=96.81 E-value=0.012 Score=40.79 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=40.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (216)
.+.+|+|+|++-|..++.++.+.+ ..|+++|+++...+..+++++-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhh
Confidence 578999999999999999998743 3899999999999999887665
No 283
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.77 E-value=0.021 Score=47.81 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=65.7
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc----CCC---C
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD----GRT---G 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~---~ 84 (216)
.+.++.+||..|||+ |..+..+++..+. ..++++|.+++..+.+++.. ...++... ... .
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~-----------~~~vi~~~~~~~~~~~l~~ 248 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHL-----------GAETINFEEVDDVVEALRE 248 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcC-----------CcEEEcCCcchHHHHHHHH
Confidence 467889999999988 8899999998642 36999999999888877642 11222111 100 1
Q ss_pred CCCCCCccEEEecCCC---------------------CchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYV---------------------PEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~---------------------~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+|+|+..... ...+..+.+.++++|.++..-
T Consensus 249 ~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 249 LTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred HcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1123368999875432 225677889999999998763
No 284
>KOG4058|consensus
Probab=96.75 E-value=0.017 Score=41.18 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=73.3
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG 84 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (216)
.++.++. -++..+.+|+|+|.|.+....++.. ....+|+|+++=.+..++-+.-+.+. .++..|...|.-+.
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~----~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGC----AKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhc----ccchhhhhhhhhhc
Confidence 3444443 2556799999999999988888773 24789999999999888877776664 36677877776544
Q ss_pred CCCCCCccEEEecC---CCCchHHHHHhcCCCCeEEEEeec
Q psy14962 85 LLHQAPFDAIYLST---YVPEIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 85 ~~~~~~~D~i~~~~---~~~~~~~~~~~~L~~gG~lv~~~~ 122 (216)
...+ |..++... .++.+...+..-+..+..++..-.
T Consensus 135 dl~d--y~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 135 DLRD--YRNVVIFGAESVMPDLEDKLRTELPANTRVVACRF 173 (199)
T ss_pred cccc--cceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEec
Confidence 4333 33333322 234455677777788887776533
No 285
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.68 E-value=0.033 Score=45.25 Aligned_cols=95 Identities=25% Similarity=0.243 Sum_probs=65.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC------C
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG------L 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~------~ 85 (216)
.+.++.+||..|+|. |..+..+++..+ .+|++++.+++..+.+++. + ++.+...-... .
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~----g--------~~~~~~~~~~~~~~~~~~ 227 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKEL----G--------ADEVLNSLDDSPKDKKAA 227 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHh----C--------CCEEEcCCCcCHHHHHHH
Confidence 367888999988875 888888888864 5899999999887776542 1 11111111100 1
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.....+|+++...........+.+.|+++|.++...
T Consensus 228 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 228 GLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred hcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEEC
Confidence 223569999877666667788899999999998754
No 286
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.68 E-value=0.014 Score=46.60 Aligned_cols=96 Identities=22% Similarity=0.173 Sum_probs=64.8
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCC---CCCCCC
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGR---TGLLHQ 88 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~---~~~~~~ 88 (216)
..++++||-.|+|+ |..+..+++..+. ..|+++|.+++.++.+++.-.. . ++.. +.. ......
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~~Ga~---------~--~i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALSFGAT---------A--LAEPEVLAERQGGLQNG 185 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCc---------E--ecCchhhHHHHHHHhCC
Confidence 35789999999987 8888888888642 2488999998887777653111 1 1110 100 001122
Q ss_pred CCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
..+|+++....-...+....+.++++|+++..-
T Consensus 186 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 186 RGVDVALEFSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCCEEEECCCChHHHHHHHHHhcCCCEEEEec
Confidence 358999987776777788899999999998753
No 287
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.65 E-value=0.014 Score=49.19 Aligned_cols=88 Identities=17% Similarity=0.008 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
.+|++|+-+|+|+ |......++..+ ++|+++|.++.....|... | ......+ . .. ..+|+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~----G--------~~~~~~~--e-~v--~~aDV 260 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAME----G--------YEVMTME--E-AV--KEGDI 260 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhc----C--------CEEccHH--H-HH--cCCCE
Confidence 5799999999999 887777787754 4899999999877766542 1 1221111 1 11 24799
Q ss_pred EEecCCCCchHHH-HHhcCCCCeEEEEee
Q psy14962 94 IYLSTYVPEIPYS-ILLQLKPGGRLVCGV 121 (216)
Q Consensus 94 i~~~~~~~~~~~~-~~~~L~~gG~lv~~~ 121 (216)
|+...+....+.. ..+.+|+||+++..-
T Consensus 261 VI~atG~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 261 FVTTTGNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 9988777776654 488999999987654
No 288
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0038 Score=50.66 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCCCCCCccE
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLLHQAPFDA 93 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~D~ 93 (216)
.+++||+|.|+|....++-.-...-.+++.++.|+...+.........+. ........|+. ........|++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----EKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----ccCCCCCCccchhccCCCccceeeh
Confidence 45799999999987665544432223677888888877666554433221 22222333332 12223456777
Q ss_pred EEecCCC-----Cc----hHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYV-----PE----IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~-----~~----~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|++..-+ +. .++.+..++.|||.+|+.....
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 7654332 22 5688999999999999987543
No 289
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.63 E-value=0.017 Score=43.69 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=51.8
Q ss_pred CCeEEEEcCCCchHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--------
Q psy14962 17 GAKVLDIGSGSGFMSCVFAE---LVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------- 85 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~---~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 85 (216)
.+.|+|+|.-.|.-+...|. .+++.++|+|+|++-...... ....+.+ .++++++.+|.....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~----~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM----SPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--------TTEEEEES-SSSTHHHHTSGSS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc----cCceEEEECCCCCHHHHHHHHHh
Confidence 47999999999888877664 444567999999964332111 1111111 378999999975321
Q ss_pred CCCCCccEEEecCCC--Cch---HHHHHhcCCCCeEEEEeecC
Q psy14962 86 LHQAPFDAIYLSTYV--PEI---PYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~--~~~---~~~~~~~L~~gG~lv~~~~~ 123 (216)
.......+|+.+... .++ ++....++.+|+++|+....
T Consensus 107 ~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp ----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 112234466665553 333 35567899999999995443
No 290
>KOG2793|consensus
Probab=96.62 E-value=0.023 Score=44.31 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=60.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCCCeEEEeccCCCCCC---CCCC-c
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLL-NDGRLHLRCRDGRTGLL---HQAP-F 91 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---~~~~-~ 91 (216)
..+||++|+|+|..++.++... .++|...|...-. .....+....+.... ....+.+...+...... .... +
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4579999999999998888875 4588888865433 222222211111000 01245555555442221 1133 8
Q ss_pred cEEEecCCC------CchHHHHHhcCCCCeEEEEee
Q psy14962 92 DAIYLSTYV------PEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 92 D~i~~~~~~------~~~~~~~~~~L~~gG~lv~~~ 121 (216)
|+|++..++ +.+...+...|..++.+++..
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 988877765 346678888888988655543
No 291
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.61 E-value=0.0047 Score=51.34 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=65.5
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCC--
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGL-- 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~-- 85 (216)
.++++++||-.|+|. |..+..+++..+ + .|+++|.+++.++.+++.-. + .++.. +.....
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G--~~~Vi~~~~~~~r~~~a~~~Ga---------~--~~i~~~~~~~~~~i~~ 254 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAG--ASQVVAVDLNEDKLALARELGA---------T--ATVNAGDPNAVEQVRE 254 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHHcCC---------c--eEeCCCchhHHHHHHH
Confidence 467899999999877 788888888753 4 69999999998887764311 1 11111 110000
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
...+.+|+|+.............+.|+++|+++..-
T Consensus 255 ~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 255 LTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred HhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence 012368999987766667788889999999988753
No 292
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.55 E-value=0.012 Score=44.63 Aligned_cols=104 Identities=14% Similarity=0.044 Sum_probs=58.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhC------------------------------
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIR------------------------------ 65 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~------------------------------ 65 (216)
+-++.|-+||+|++...+.-..+. -..|++.|+++++++.|++++.-..
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 347999999999988766544222 2489999999999999998765100
Q ss_pred ------CCCC-CCCCeEEEeccCCCCC-----CCCCCccEEEecCCCC---------------chHHHHHhcCCCCeEEE
Q psy14962 66 ------PDLL-NDGRLHLRCRDGRTGL-----LHQAPFDAIYLSTYVP---------------EIPYSILLQLKPGGRLV 118 (216)
Q Consensus 66 ------~~~~-~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~~~~---------------~~~~~~~~~L~~gG~lv 118 (216)
+... +.....+...|+.... ......|+|+.+.+.. .++..+..+|-.++++.
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence 0001 1233567777766421 1223469999988752 26689999995556555
Q ss_pred Ee
Q psy14962 119 CG 120 (216)
Q Consensus 119 ~~ 120 (216)
++
T Consensus 212 v~ 213 (246)
T PF11599_consen 212 VS 213 (246)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 293
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.54 E-value=0.0097 Score=41.47 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=61.8
Q ss_pred CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------CCCCCCCccEEEecCC
Q psy14962 26 GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------GLLHQAPFDAIYLSTY 99 (216)
Q Consensus 26 G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~D~i~~~~~ 99 (216)
|.|..+..+++..+ .+|+++|.++..++.+++... -.++..+-.. ....+..+|+|+-..+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga-----------~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGA-----------DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTE-----------SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcc-----------cccccccccccccccccccccccceEEEEecC
Confidence 35788899999975 699999999998888876421 1122221110 1112347999999998
Q ss_pred CCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 100 VPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 100 ~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
....+....++++++|++++.-...
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 8888899999999999999875544
No 294
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.53 E-value=0.029 Score=45.88 Aligned_cols=96 Identities=23% Similarity=0.199 Sum_probs=64.6
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-----CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-----GL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~ 85 (216)
.+.+|.+||-.|+|. |..+..+++..+ .+ |++++.+++..+.+++... + .++...-.. ..
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~ga---------~--~~i~~~~~~~~~~~~~ 226 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKALGA---------D--FVINSGQDDVQEIREL 226 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCC---------C--EEEcCCcchHHHHHHH
Confidence 357899999999877 778888888864 45 9999999888777754311 1 111111000 01
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.....+|+|+-...-........+.|+++|++++.-
T Consensus 227 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 227 TSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 122369999987766666677788999999998653
No 295
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.42 E-value=0.037 Score=45.52 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=63.7
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEec---cCC---CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCR---DGR---TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---d~~---~~ 84 (216)
.++++.+|+-.|+|+ |..+..+++..+ .+|+++|.+++.++.+++. + .+.+ +.... +.. ..
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~~~~~ 231 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKGF----G-----ADLTLNPKDKSAREVKKLIKA 231 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----C-----CceEecCccccHHHHHHHHHh
Confidence 467899999999987 888888888864 4899999999988877543 1 1111 10010 110 00
Q ss_pred CCCCCCcc----EEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFD----AIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D----~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+| +|+...+-........+.|++||++++.-
T Consensus 232 ~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 232 FAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred hcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEEC
Confidence 11112344 67766665666677888999999998753
No 296
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.41 E-value=0.019 Score=44.02 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCCCeEEEeccCC----CCC-CCCC
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-RPDLLNDGRLHLRCRDGR----TGL-LHQA 89 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~----~~~-~~~~ 89 (216)
++.++||||.|.-.+=..+-.+ .-+.+.+|.|+++..++.|+..+..+ ++ ...+++....-. ... -..+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~~l----~~~I~lr~qk~~~~if~giig~nE 152 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANPGL----ERAIRLRRQKDSDAIFNGIIGKNE 152 (292)
T ss_pred CceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcCcch----hhheeEEeccCccccccccccccc
Confidence 4567899999885432222111 12568999999999999999887764 32 133444433211 111 1247
Q ss_pred CccEEEecCCCCchHHHHH
Q psy14962 90 PFDAIYLSTYVPEIPYSIL 108 (216)
Q Consensus 90 ~~D~i~~~~~~~~~~~~~~ 108 (216)
.||++.|+.+++.......
T Consensus 153 ~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 153 RYDATLCNPPFHDSAADAR 171 (292)
T ss_pred eeeeEecCCCcchhHHHHH
Confidence 8999999999988665444
No 297
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.41 E-value=0.028 Score=48.61 Aligned_cols=96 Identities=22% Similarity=0.198 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----------
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---------- 83 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---------- 83 (216)
.++.+|+-+|+|. |..+..+++..+ +.|+++|.+++.++.+++. + .+++..|...
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~l----G--------a~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSM----G--------AEFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----C--------CeEEecccccccccccccee
Confidence 3578999999999 788888888865 4899999999987777652 1 1222222100
Q ss_pred -------------CCCCCCCccEEEecCCC-----Cc-hHHHHHhcCCCCeEEEEeecCC
Q psy14962 84 -------------GLLHQAPFDAIYLSTYV-----PE-IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 84 -------------~~~~~~~~D~i~~~~~~-----~~-~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
....-..+|+|+..... +. +.+++.+.+|||+.++=....+
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ 287 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence 00012458999887732 22 4588899999999987443333
No 298
>PLN02740 Alcohol dehydrogenase-like
Probab=96.33 E-value=0.04 Score=45.96 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=65.9
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-----CCCCC-
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-----GRTGL- 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~- 85 (216)
.+++|++||-+|+|+ |..+..+++..+. ..|+++|.+++.++.+++. | .+ .++... .....
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~~----G-----a~--~~i~~~~~~~~~~~~v~ 262 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKEM----G-----IT--DFINPKDSDKPVHERIR 262 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHHc----C-----Cc--EEEecccccchHHHHHH
Confidence 467899999999988 8888888888642 2699999999888877642 1 11 122111 10000
Q ss_pred -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962 86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV 121 (216)
Q Consensus 86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 121 (216)
...+.+|+|+-.......+....+.+++| |++++.-
T Consensus 263 ~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 263 EMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred HHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEc
Confidence 01126999998888777778888889896 8877643
No 299
>KOG0023|consensus
Probab=96.27 E-value=0.011 Score=47.59 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=62.7
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--cC--CCCCC-
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--DG--RTGLL- 86 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~--~~~~~- 86 (216)
.+.||.+|--+|.|- |.++..+|+.++ .+|+++|.++.-.+.+.+.+.. +. |+.. |- .....
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~LGA--------d~--fv~~~~d~d~~~~~~~ 245 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSLGA--------DV--FVDSTEDPDIMKAIMK 245 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhcCc--------ce--eEEecCCHHHHHHHHH
Confidence 356899998888865 999999999985 5999999998766666655422 11 2211 11 11110
Q ss_pred -CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962 87 -HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 87 -~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 122 (216)
.+.-.|.+..- ..+.+..+.++||++|.+++.-.
T Consensus 246 ~~dg~~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 246 TTDGGIDTVSNL--AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred hhcCcceeeeec--cccchHHHHHHhhcCCEEEEEeC
Confidence 12233444422 55666888999999999988643
No 300
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.24 E-value=0.014 Score=47.89 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=62.9
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-----CCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-----TGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~ 85 (216)
.+.++.+||-.|+|+ |..+..+++..+ .. |++++.+++..+.+++. + .. .++..+-. ...
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~~~----G-----a~--~~i~~~~~~~~~~~~~ 223 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALG--AKSVTAIDINSEKLALAKSL----G-----AM--QTFNSREMSAPQIQSV 223 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHHc----C-----Cc--eEecCcccCHHHHHHH
Confidence 356889999999987 888888888864 44 78899888887766442 1 11 11111100 001
Q ss_pred CCCCCcc-EEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFD-AIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D-~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.....+| +|+-..+....+....+.|++||++++.
T Consensus 224 ~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 224 LRELRFDQLILETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred hcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 1223577 7776666566778888999999998875
No 301
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=96.16 E-value=0.055 Score=43.99 Aligned_cols=99 Identities=23% Similarity=0.160 Sum_probs=71.1
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec----cCCC--CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR----DGRT--GL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~--~~ 85 (216)
++++|++|.-+|||. |..++.-|+..+ ..+++++|+++.-++.|++.-.. +++.. |... ..
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~fGAT-----------~~vn~~~~~~vv~~i~~ 249 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKFGAT-----------HFVNPKEVDDVVEAIVE 249 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhcCCc-----------eeecchhhhhHHHHHHH
Confidence 478999999999988 777777777754 35999999999999988875332 22221 1111 11
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecC
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
..++..|.++........+++....++++|..++.-..
T Consensus 250 ~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 250 LTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred hcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 12346788888888777888888999999998776433
No 302
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=96.13 E-value=0.066 Score=45.20 Aligned_cols=106 Identities=20% Similarity=0.133 Sum_probs=65.5
Q ss_pred cCCCCCeEEEEc-CCC-chHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec----cCCC--
Q psy14962 13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKT-GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR----DGRT-- 83 (216)
Q Consensus 13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~-- 83 (216)
.+++|++|+-+| +|. |..+..+++..+.+ .+|+++|.+++.++.+++.+..... ..+. ...++.. +...
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga-~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGI-ELLYVNPATIDDLHATL 249 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCc-eEEEECCCccccHHHHH
Confidence 357889999997 566 88888888875422 3799999999999888774211000 0000 1112211 1100
Q ss_pred -CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 84 -GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 84 -~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.......+|+|+...+....+....+.++++|.+++.
T Consensus 250 ~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 250 MELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEE
Confidence 0112346899988766666777888999988876654
No 303
>KOG1253|consensus
Probab=96.10 E-value=0.0089 Score=50.59 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----CCCCCC
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT----GLLHQA 89 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~ 89 (216)
..++.+|||.-|++|.-++..++.++.-.+|++.|.++..++..+++...++.+ +.+.....|+.. ......
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~----~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE----DIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch----hhcccccchHHHHHHhcccccc
Confidence 346778999999999999999999865558999999999999999888765432 334444555431 111236
Q ss_pred CccEEEecCCC--CchHHHHHhcCCCCeEEEEeecC
Q psy14962 90 PFDAIYLSTYV--PEIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 90 ~~D~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
.||+|-.+.-- ..+++...+.++.||.+.+++..
T Consensus 183 ~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 183 FFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 79999876442 34789999999999999998644
No 304
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.048 Score=44.73 Aligned_cols=102 Identities=21% Similarity=0.197 Sum_probs=76.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEEE
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIY 95 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~ 95 (216)
..+|+|.-+|+|.=++..+...+. .+|+.-|++|.+++.+++++..+. +.+..++..|+...... ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNS-----GEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcC-----cccceeecchHHHHHHhcCCCccEEe
Confidence 678999999999999999988643 289999999999999999998752 24566666776533222 36799986
Q ss_pred ecCCC-C-chHHHHHhcCCCCeEEEEeecCC
Q psy14962 96 LSTYV-P-EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 96 ~~~~~-~-~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.+.-- + -+++...+.++.+|++-++....
T Consensus 127 iDPFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 127 IDPFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred cCCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 65332 2 25578888889999998876443
No 305
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.05 E-value=0.075 Score=41.43 Aligned_cols=96 Identities=27% Similarity=0.321 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-----CCC
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-----LLH 87 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 87 (216)
+.++.+||..|+|+ |..+..+++..+ .+|++++.++...+.+++... .. ++....... ...
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~---------~~--~~~~~~~~~~~~~~~~~ 198 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKELGA---------DH--VIDYKEEDLEEELRLTG 198 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCC---------ce--eccCCcCCHHHHHHHhc
Confidence 46789999999986 777777887754 599999999877766643210 11 111100000 112
Q ss_pred CCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962 88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 122 (216)
...+|+++...........+.+.|+++|.++....
T Consensus 199 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 199 GGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEcc
Confidence 35699999876654566778899999999887543
No 306
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.98 E-value=0.031 Score=46.35 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCc
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPF 91 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~ 91 (216)
+.+|++||-.|+|. |..+..+++..+ +++++++.+++....+.+ +.| .+ .++. .+........+.+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~---~~G-----a~--~vi~~~~~~~~~~~~~~~ 248 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAIN---RLG-----AD--SFLVSTDPEKMKAAIGTM 248 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHH---hCC-----Cc--EEEcCCCHHHHHhhcCCC
Confidence 46789999999988 888888888864 478888777654332221 111 11 1111 1100000001248
Q ss_pred cEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 92 DAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
|+|+........+....+.|+++|+++..
T Consensus 249 D~vid~~g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 249 DYIIDTVSAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CEEEECCCCHHHHHHHHHHhcCCcEEEEe
Confidence 99998766555667788999999998865
No 307
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=95.98 E-value=0.075 Score=44.13 Aligned_cols=98 Identities=16% Similarity=0.122 Sum_probs=64.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc----CCCCC--
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD----GRTGL-- 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~~~-- 85 (216)
.+++|++||-.|+|. |..+..+++..+. .+|+++|.+++.++.+++.-. +.+ +...+ .....
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~~Ga---------~~~-i~~~~~~~~~~~~v~~ 250 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKKLGA---------TDC-VNPNDYDKPIQEVIVE 250 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHhCC---------CeE-EcccccchhHHHHHHH
Confidence 467899999999987 8888888888642 279999999998887755311 111 11111 00000
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 121 (216)
...+.+|+++-............+.++++ |++++.-
T Consensus 251 ~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 251 ITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred HhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEe
Confidence 01135899998777666677888899886 9887653
No 308
>PLN02827 Alcohol dehydrogenase-like
Probab=95.95 E-value=0.067 Score=44.67 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=64.1
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-----cCCCCC-
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-----DGRTGL- 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~~~~- 85 (216)
.+.+|.+||-.|+|+ |..+..+++..+. ..|+++|.+++..+.+++. | .+ .++.. +.....
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~l----G-----a~--~~i~~~~~~~~~~~~v~ 257 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKTF----G-----VT--DFINPNDLSEPIQQVIK 257 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHc----C-----Cc--EEEcccccchHHHHHHH
Confidence 467899999999987 8888888888642 2588999888877777542 1 11 11111 110000
Q ss_pred -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEe
Q psy14962 86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCG 120 (216)
Q Consensus 86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~ 120 (216)
...+.+|+|+-..+....+....+.+++| |++++.
T Consensus 258 ~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 258 RMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred HHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEE
Confidence 01225899998777666677888899998 999764
No 309
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=95.94 E-value=0.083 Score=41.72 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=63.5
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP 90 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (216)
.+.++.+||-.|+|. |..+..+++..+ .+ |++++.+++..+.+++.... ..+ .... ........
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~g~~--------~~~--~~~~--~~~~~~~~ 159 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEALGPA--------DPV--AADT--ADEIGGRG 159 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHcCCC--------ccc--cccc--hhhhcCCC
Confidence 467889999999877 778888888865 35 99999888887766543100 111 1000 01112346
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
+|+++.............+.|+++|.++..-
T Consensus 160 ~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 160 ADVVIEASGSPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCEEEEccCChHHHHHHHHHhcCCcEEEEEe
Confidence 8999976555556678889999999997643
No 310
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.051 Score=44.52 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=43.7
Q ss_pred HHHHHHhcccCCC-CCeEEEEcCCCchHHHHHHHHh---CC----CcEEEEEeCCHHHHHHHHHHHHH
Q psy14962 4 ARIIELLEPKIQE-GAKVLDIGSGSGFMSCVFAELV---GK----TGRVFGVEHMREQCEDAWETVMR 63 (216)
Q Consensus 4 ~~~~~~l~~~~~~-~~~vldiG~G~G~~~~~l~~~~---~~----~~~v~~~D~~~~~~~~a~~~~~~ 63 (216)
..+++.+...-.| ...++|+|+|.|.++..+++.. .| ..++..+|+|++..+.-++++..
T Consensus 64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3444555433344 3469999999999998887765 22 34889999999998888877765
No 311
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=95.82 E-value=0.025 Score=46.15 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=63.2
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCCCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGLLHQ 88 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~ 88 (216)
.+.++.+||-.|+|. |..+..+++..+ .++++++.+++..+.+++. + .+ .++.. +........
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~----g-----~~--~~i~~~~~~~~~~~~~~ 226 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARKL----G-----AH--HYIDTSKEDVAEALQEL 226 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHc----C-----Cc--EEecCCCccHHHHHHhc
Confidence 467889999999877 888888888864 4899999888877777442 1 11 11111 110000111
Q ss_pred CCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
..+|+++...+.........+.|+++|.++..-
T Consensus 227 ~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 227 GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 348999976544556778889999999988653
No 312
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.0038 Score=44.78 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=34.3
Q ss_pred CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 84 GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
....+++.|+|++...+++ .++.+++.|||||++-+.++...
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 3445678999999888876 34788999999999999988775
No 313
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=95.70 E-value=0.21 Score=41.97 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=64.2
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCC---CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRT---GL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~ 85 (216)
.+.++++||-.|+|+ |..+..+++..+. ..++.+|.+++.++.+++. | .. .+... +... ..
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~~----G-----a~--~v~~~~~~~~~~~v~~~ 249 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARSF----G-----CE--TVDLSKDATLPEQIEQI 249 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHc----C-----Ce--EEecCCcccHHHHHHHH
Confidence 467899998899987 8888888888653 2466678888877777653 1 11 11111 1100 01
Q ss_pred CCCCCccEEEecCCCC--------------chHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVP--------------EIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~ 121 (216)
.....+|+++.....+ ..+....+.+++||++++.-
T Consensus 250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 1224589999877765 36788889999999998743
No 314
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.68 E-value=0.17 Score=41.59 Aligned_cols=96 Identities=27% Similarity=0.263 Sum_probs=64.0
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCC---CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRT---GL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~ 85 (216)
.++++.+||-.|+|. |..+..+++..+. ..++++|.+++..+.+++. + .+ .++.. +... ..
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~--~~v~~~~~~~~~~i~~~ 230 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKEY----G-----AT--DIVDYKNGDVVEQILKL 230 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc----C-----Cc--eEecCCCCCHHHHHHHH
Confidence 367889999999876 7788888888643 2689999988877666542 1 11 11111 1100 11
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.....+|+++.............+.|+++|+++..
T Consensus 231 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 231 TGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred hCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEe
Confidence 12346999997766556778889999999998864
No 315
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.68 E-value=0.11 Score=42.92 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=62.8
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEec-cCCCCC--C
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCR-DGRTGL--L 86 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~-d~~~~~--~ 86 (216)
.+.+|++||-.|+ |. |..+..+++..+ .+|++++.+++..+.+++.+ | .+.+ +.... +..... .
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~l---G-----a~~vi~~~~~~~~~~~i~~~ 224 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKL---G-----FDEAFNYKEEPDLDAALKRY 224 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhc---C-----CCEEEECCCcccHHHHHHHH
Confidence 4678999999998 54 888899998864 58999998888776665322 1 1111 11001 111000 0
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
..+.+|+|+-...- .......+.|+++|++++.
T Consensus 225 ~~~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 225 FPEGIDIYFDNVGG-DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CCCCcEEEEECCCH-HHHHHHHHHhccCCEEEEE
Confidence 12358999876553 4667888999999998864
No 316
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=95.67 E-value=0.1 Score=42.10 Aligned_cols=91 Identities=23% Similarity=0.214 Sum_probs=62.4
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF 91 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 91 (216)
.+.++.+||-.|+|. |..+..+++..+ .++++++.+++..+.+++. + ...+... .. ......+
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~~----g-----~~~~~~~----~~-~~~~~~~ 215 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARRL----G-----VETVLPD----EA-ESEGGGF 215 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHc----C-----CcEEeCc----cc-cccCCCC
Confidence 457889999988766 777777788764 4799999888887777652 1 1111111 11 1233569
Q ss_pred cEEEecCCCCchHHHHHhcCCCCeEEEE
Q psy14962 92 DAIYLSTYVPEIPYSILLQLKPGGRLVC 119 (216)
Q Consensus 92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~ 119 (216)
|+++-...-........+.|+++|.++.
T Consensus 216 d~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 216 DVVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 9999876555566778889999999987
No 317
>KOG0822|consensus
Probab=95.67 E-value=0.059 Score=46.23 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=66.8
Q ss_pred eEEEEcCCCchHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHH-HHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 19 KVLDIGSGSGFMSCVFAELV---GKTGRVFGVEHMREQCEDAWE-TVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.|.-+|+|-|-+.....+.. ....+++++|.+|.++-..+. +...+ ..+++++..|++....+..+.|++
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W------~~~Vtii~~DMR~w~ap~eq~DI~ 443 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW------DNRVTIISSDMRKWNAPREQADII 443 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh------cCeeEEEeccccccCCchhhccch
Confidence 46789999998776554432 223488999999998766554 23333 378999999998655444678998
Q ss_pred EecC--------CCCchHHHHHhcCCCCeEEEEe
Q psy14962 95 YLST--------YVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 95 ~~~~--------~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
++-. ..++.+.-+.+.|||+|+.+=.
T Consensus 444 VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 444 VSELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred HHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 7521 1244667788999999876543
No 318
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=95.56 E-value=0.04 Score=45.67 Aligned_cols=98 Identities=22% Similarity=0.263 Sum_probs=63.4
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccC--C---CCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDG--R---TGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~--~---~~~ 85 (216)
.+.+|.+||-.|+|. |..+..+++..+. ..|+++|.++...+.+++. + ...+ .....+. . ...
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~~----g-----a~~~i~~~~~~~~~~~~~~~~ 250 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKEF----G-----ATDFINPKDSDKPVSEVIREM 250 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc----C-----CCcEeccccccchHHHHHHHH
Confidence 467899999999877 7787888888642 2799999998888777542 1 1111 1000000 0 001
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 121 (216)
. ...+|+|+........+....+.++++ |.++..-
T Consensus 251 ~-~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 251 T-GGGVDYSFECTGNADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred h-CCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEc
Confidence 1 245899998766566677788899885 8887653
No 319
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=95.55 E-value=0.081 Score=43.76 Aligned_cols=96 Identities=23% Similarity=0.182 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
..+|.+|+-.|+|. |..+..+++..+ ..+++++.+++....+.+.+ | .+.+ +...+..........+|
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~---G-----a~~~-i~~~~~~~~~~~~~~~D 246 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHL---G-----ADDY-LVSSDAAEMQEAADSLD 246 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhc---C-----CcEE-ecCCChHHHHHhcCCCc
Confidence 35789999888877 888888888864 47888887776554443321 1 1111 11111000000112589
Q ss_pred EEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 93 AIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 93 ~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
+++-..+....+....+.++++|+++..
T Consensus 247 ~vid~~g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 247 YIIDTVPVFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EEEECCCchHHHHHHHHHhccCCEEEEE
Confidence 9998766555677888999999998874
No 320
>KOG2798|consensus
Probab=95.53 E-value=0.11 Score=41.87 Aligned_cols=49 Identities=24% Similarity=0.172 Sum_probs=34.2
Q ss_pred HHHHHHhcccCCC------CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHH
Q psy14962 4 ARIIELLEPKIQE------GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCE 55 (216)
Q Consensus 4 ~~~~~~l~~~~~~------~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~ 55 (216)
..+++.|....++ ..+||--|||.|.++..++.. +..+-|-|.|--|+-
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli 186 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLI 186 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh---cccccccHHHHHHHH
Confidence 3455555433333 457999999999999999987 346777777766653
No 321
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.52 E-value=0.2 Score=41.04 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=63.4
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccC------CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDG------RT 83 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~------~~ 83 (216)
.+.++.+||-.|+|. |..+..+++..+ .+ |++++.+++..+.+++. + .+.+ .....+. ..
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~~~~~~ 227 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKEL----G-----ATHTVNVRTEDTPESAEKIA 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHc----C-----CcEEeccccccchhHHHHHH
Confidence 467899999888876 788888888864 45 88888888776666442 1 1111 0111110 00
Q ss_pred CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 84 GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
....+..+|+|+-............+.|+++|+++...
T Consensus 228 ~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 228 ELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 11223459999987665556778899999999987643
No 322
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=95.41 E-value=0.19 Score=40.75 Aligned_cols=96 Identities=22% Similarity=0.189 Sum_probs=62.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----CCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT----GLL 86 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~ 86 (216)
.+.++.+||..|+|. |..+..+++..+ .+ +++++.+++..+.+++. + .. .++..+-.. ...
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~ 222 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKKL----G-----AT--ETVDPSREDPEAQKED 222 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----C-----Ce--EEecCCCCCHHHHHHh
Confidence 467889999998765 777777888754 35 88888888877666432 1 11 222211110 011
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
....+|+++...........+.+.|+++|+++..-
T Consensus 223 ~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 223 NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEe
Confidence 23569999987655566778889999999987653
No 323
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.39 E-value=0.19 Score=40.74 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=62.1
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc----CCC--C
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD----GRT--G 84 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~--~ 84 (216)
.+.+|.+||-.|+ |. |..+..+++..+ .+|++++.+++..+.+++. | .+. ++..+ ... .
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~l----G-----a~~--vi~~~~~~~~~~~~~ 201 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKKL----G-----FDV--AFNYKTVKSLEETLK 201 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C-----CCE--EEeccccccHHHHHH
Confidence 4678999999985 44 888888998864 5899999888877766542 1 111 11111 110 0
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
....+.+|+|+-...-. ......++|+++|+++..
T Consensus 202 ~~~~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 202 KASPDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred HhCCCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEe
Confidence 01124689998765543 457888999999999864
No 324
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.39 E-value=0.026 Score=37.97 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCC
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHM 50 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~ 50 (216)
+....+|+|||+|.+.-.+.+. +..=+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCccccccc
Confidence 3457999999999998888776 4466888853
No 325
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=95.39 E-value=0.23 Score=41.22 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=63.6
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-c----CCCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-D----GRTGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d----~~~~~ 85 (216)
.+++|++||-.|+|. |..+..+++..+ . .|+++|.+++.++.+++. + .+. ++.. + .....
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G--~~~vi~~~~~~~~~~~~~~l----G-----a~~--~i~~~~~~~~~~~~v 249 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG--ASRIIGIDINPDKFELAKKF----G-----ATD--CVNPKDHDKPIQQVL 249 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHc----C-----CCE--EEcccccchHHHHHH
Confidence 467899999999877 778888888864 4 699999999888777542 1 111 1111 1 10000
Q ss_pred --CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEe
Q psy14962 86 --LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCG 120 (216)
Q Consensus 86 --~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~ 120 (216)
...+.+|+|+....-........+.++++ |+++..
T Consensus 250 ~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 250 VEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred HHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence 01236899998766555677788899887 888765
No 326
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=95.34 E-value=0.087 Score=43.96 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCc
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQ-CEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPF 91 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~ 91 (216)
++|++|+-.|+|. |..+..+++..+ ++|++++.+++. .+.+++ .| .+. ++. .+........+.+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~----lG-----a~~--~i~~~~~~~v~~~~~~~ 243 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDR----LG-----ADS--FLVTTDSQKMKEAVGTM 243 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHh----CC-----CcE--EEcCcCHHHHHHhhCCC
Confidence 5789999999987 888888898864 489998877543 333322 12 111 111 1100000001248
Q ss_pred cEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 92 DAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
|+|+........+....+.++++|+++..
T Consensus 244 D~vid~~G~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 244 DFIIDTVSAEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred cEEEECCCcHHHHHHHHHhhcCCCEEEEE
Confidence 99998776665677888999999999865
No 327
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=95.31 E-value=0.068 Score=43.61 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CCCCCCCCCC
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GRTGLLHQAP 90 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 90 (216)
++.+||..|+|. |..+..+++.. +. .+++++.++...+.+++. + .+ .++..+ ........+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~----g-----~~--~vi~~~~~~~~~~~~~~~~ 231 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAM----G-----AD--ETVNLARDPLAAYAADKGD 231 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHc----C-----CC--EEEcCCchhhhhhhccCCC
Confidence 788999988876 77888888875 34 789999888877655432 1 11 112111 1011111245
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
+|+++...........+.+.|+++|+++..
T Consensus 232 vd~vld~~g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 232 FDVVFEASGAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ccEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 999998766555677889999999999864
No 328
>KOG2651|consensus
Probab=95.26 E-value=0.064 Score=44.21 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=35.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (216)
.+-+.|+|+|+|.|+++..++-.. +.+|.++|-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 445789999999999999998775 4599999999777666654
No 329
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.25 E-value=0.039 Score=43.39 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=42.9
Q ss_pred hHHHHHHHhcccCCCC--CeEEEEcCCCchHHHHHHHHhCCC-------cEEEEEeCCHHHHHHHHHHHHH
Q psy14962 2 QQARIIELLEPKIQEG--AKVLDIGSGSGFMSCVFAELVGKT-------GRVFGVEHMREQCEDAWETVMR 63 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~-------~~v~~~D~~~~~~~~a~~~~~~ 63 (216)
+...++......-.|. .+|+|+|+|+|.++..+++.+... .+++.+|.|+.+.+.-++++..
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4455555555322343 589999999999999988776522 4899999999998888877654
No 330
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=95.25 E-value=0.12 Score=41.96 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=62.7
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAP 90 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 90 (216)
.+.++.+||..|+|. |..+..+++..+ .+|++++.+++..+.+++. + ... ++...-.... ...+.
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~----g-----~~~--~~~~~~~~~~~~~~~~ 225 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARKL----G-----ADE--VVDSGAELDEQAAAGG 225 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHh----C-----CcE--EeccCCcchHHhccCC
Confidence 367888999999874 777777888764 4899999888877766432 1 011 1111100000 01235
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
+|+++...........+.+.|+++|.++...
T Consensus 226 ~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 226 ADVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 8999876555556778889999999988764
No 331
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=95.20 E-value=0.2 Score=41.54 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=63.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-----CCCC--
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-----GRTG-- 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~~-- 84 (216)
.+.+|++||-.|+|. |..+..+++..+. .+|++++.+++..+.+++. | .. .++..+ ....
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~~----G-----a~--~~i~~~~~~~~~~~~v~ 251 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKKF----G-----VT--EFVNPKDHDKPVQEVIA 251 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc----C-----Cc--eEEcccccchhHHHHHH
Confidence 467899999999877 7788888887642 2799999999888777542 1 11 111111 0000
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~ 121 (216)
....+.+|+++-.......+....+.++++ |++++.-
T Consensus 252 ~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 252 EMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred HHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEEC
Confidence 011235899998766666677788899996 8887643
No 332
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.13 E-value=0.09 Score=41.98 Aligned_cols=69 Identities=16% Similarity=-0.015 Sum_probs=48.0
Q ss_pred eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CCCccEEEe
Q psy14962 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QAPFDAIYL 96 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~ 96 (216)
+|+|+.||.|.++..+.+. + -..+.++|.++...+..+.+... .++.+|....... ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEe
Confidence 6899999999998877665 2 22578899999988776665422 1455666543321 346899998
Q ss_pred cCCC
Q psy14962 97 STYV 100 (216)
Q Consensus 97 ~~~~ 100 (216)
+.+-
T Consensus 69 gpPC 72 (275)
T cd00315 69 GFPC 72 (275)
T ss_pred CCCC
Confidence 8774
No 333
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.12 E-value=0.37 Score=39.07 Aligned_cols=91 Identities=24% Similarity=0.271 Sum_probs=60.6
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF 91 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 91 (216)
.+.++.+|+-.|+|. |..+..+++..+ .+++.++.+++..+.+++. + .. .++..+ .. ....+
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~--~~--~~~~v 226 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELAREL----G-----AD--WAGDSD--DL--PPEPL 226 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHHh----C-----Cc--EEeccC--cc--CCCcc
Confidence 467888998888876 677777777754 5899998888766666331 1 11 111111 11 23458
Q ss_pred cEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 92 DAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
|+++...........+.+.|+++|+++..
T Consensus 227 D~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 227 DAAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred cEEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 98887544455678899999999999864
No 334
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=95.12 E-value=0.34 Score=39.92 Aligned_cols=95 Identities=22% Similarity=0.173 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---------
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--------- 82 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--------- 82 (216)
..++.+||-.|+|. |..+..+++.. +. +|++++.+++....+++. + .+. ++.....
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~--vi~~~~~~~~~~~~~i 241 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAREF----G-----ADA--TIDIDELPDPQRRAIV 241 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CCe--EEcCcccccHHHHHHH
Confidence 34788999888876 77888888886 45 899999888776655431 1 111 1111100
Q ss_pred CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
........+|+++........+....+.++++|+++..-
T Consensus 242 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 242 RDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred HHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEc
Confidence 011123469999976655556677889999999998653
No 335
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=95.11 E-value=0.078 Score=43.57 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=62.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCC---CCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRT---GLL 86 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~---~~~ 86 (216)
.+.++.+|+-.|+|. |..+..+++.. +. .|++++.+++..+.+++. + .+.+ .....+... ...
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~~----g-----a~~~i~~~~~~~~~~l~~~~ 237 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEEL----G-----ATIVLDPTEVDVVAEVRKLT 237 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----C-----CCEEECCCccCHHHHHHHHh
Confidence 357889999998766 77777788875 44 789999888877766442 1 1111 001111100 011
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
....+|+++-..+.........+.|+++|.++..
T Consensus 238 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 238 GGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEE
Confidence 2235999998776555677888999999998764
No 336
>KOG1227|consensus
Probab=95.07 E-value=0.027 Score=44.86 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCchHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGAKVLDIGSGSGFMSC-VFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~-~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
..+..|+|+-+|-||++. .+... + ...|+++|.+|..++..++.+..++. ..+..++.+|-+.. ......|.
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V----~~r~~i~~gd~R~~-~~~~~Adr 265 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNV----MDRCRITEGDNRNP-KPRLRADR 265 (351)
T ss_pred cccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcch----HHHHHhhhcccccc-Cccccchh
Confidence 467889999999999998 55554 2 34899999999999999988877543 24556666775433 23456888
Q ss_pred EEecCCC--CchHHHHHhcCCCC-e-EEEE
Q psy14962 94 IYLSTYV--PEIPYSILLQLKPG-G-RLVC 119 (216)
Q Consensus 94 i~~~~~~--~~~~~~~~~~L~~g-G-~lv~ 119 (216)
|.....- +.--....++|||. | ++-+
T Consensus 266 VnLGLlPSse~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 266 VNLGLLPSSEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred eeeccccccccchHHHHHHhhhcCCcEEEE
Confidence 8876443 12223445667774 4 4444
No 337
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=94.83 E-value=0.43 Score=38.95 Aligned_cols=96 Identities=23% Similarity=0.253 Sum_probs=60.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCC---CCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGR---TGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~ 85 (216)
.++++.+||..|+|. |..+..+++..+. ..+++++.++...+.+++.. .. .++.. +.. ...
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~g---------~~--~vi~~~~~~~~~~i~~~ 231 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEAG---------AT--DIINPKNGDIVEQILEL 231 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhC---------Cc--EEEcCCcchHHHHHHHH
Confidence 356788999888765 7788888888642 37888888777666555321 01 11111 110 011
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.....+|+++........+....+.|+++|+++..
T Consensus 232 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 232 TGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEE
Confidence 12346899987655445678888999999998754
No 338
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.82 E-value=0.19 Score=42.38 Aligned_cols=88 Identities=16% Similarity=-0.010 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
..|++|+-+|+|. |......++.. +.+|+++|.++.....+.. .| ..+. +.... . ...|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G--------~~v~--~leea-l--~~aDV 253 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DG--------FRVM--TMEEA-A--KIGDI 253 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cC--------CEeC--CHHHH-H--hcCCE
Confidence 4799999999999 77777777765 4589999988865433332 11 2222 11111 1 24699
Q ss_pred EEecCCCCchHH-HHHhcCCCCeEEEEee
Q psy14962 94 IYLSTYVPEIPY-SILLQLKPGGRLVCGV 121 (216)
Q Consensus 94 i~~~~~~~~~~~-~~~~~L~~gG~lv~~~ 121 (216)
|+...+...++. .....+|+|++++..-
T Consensus 254 VItaTG~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 254 FITATGNKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EEECCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence 988777666654 4778999999887653
No 339
>KOG0022|consensus
Probab=94.79 E-value=0.25 Score=39.88 Aligned_cols=96 Identities=21% Similarity=0.249 Sum_probs=67.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCC-----
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGL----- 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~----- 85 (216)
.+.||+++.-+|+|. |.....-++..+ ..+++|+|++++-.+.|++.-.. +++. .|.....
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~fGaT-----------e~iNp~d~~~~i~evi~ 256 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEFGAT-----------EFINPKDLKKPIQEVII 256 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhcCcc-----------eecChhhccccHHHHHH
Confidence 478999999999999 555555566654 45999999999999988875322 1121 1222211
Q ss_pred -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEe
Q psy14962 86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCG 120 (216)
Q Consensus 86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~ 120 (216)
..++.+|..+......+.+.+.....++| |.-++.
T Consensus 257 EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 257 EMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred HHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 12467999998888888888888888888 775554
No 340
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=94.78 E-value=0.07 Score=43.53 Aligned_cols=97 Identities=25% Similarity=0.211 Sum_probs=63.2
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCC---CCCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGR---TGLLH 87 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~---~~~~~ 87 (216)
.+.++.+||..|+|. |..+..+++..+ .+|+++..+++..+.+++.. .+.+ .....+.. .....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~~g---------~~~v~~~~~~~~~~~l~~~~~ 224 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARELG---------ADDTINVGDEDVAARLRELTD 224 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHhC---------CCEEecCcccCHHHHHHHHhC
Confidence 467889999998875 778888888864 58999988888776664321 1111 11111110 01112
Q ss_pred CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
...+|+++....-......+.+.|+++|.++..
T Consensus 225 ~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 225 GEGADVVIDATGNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 345899998765555677888999999998764
No 341
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.78 E-value=0.39 Score=32.75 Aligned_cols=91 Identities=23% Similarity=0.196 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCCch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCcc
Q psy14962 15 QEGAKVLDIGSGSGF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D 92 (216)
.+| +|+|+|.|.=. .+..++++ +..++++|+++. .| +..++++.-|....... -...|
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a-------------~~g~~~v~DDitnP~~~iY~~A~ 72 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TA-------------PEGLRFVVDDITNPNISIYEGAD 72 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cC-------------cccceEEEccCCCccHHHhhCcc
Confidence 444 99999998844 44455554 469999999886 11 13478888887654322 14579
Q ss_pred EEEecCCCCchHHHHHhcCCC-CeEEEEeecCCC
Q psy14962 93 AIYLSTYVPEIPYSILLQLKP-GGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~ 125 (216)
+|++--+-+.+...+.++-+. |..+++.....+
T Consensus 73 lIYSiRpppEl~~~ildva~aVga~l~I~pL~Ge 106 (129)
T COG1255 73 LIYSIRPPPELQSAILDVAKAVGAPLYIKPLTGE 106 (129)
T ss_pred ceeecCCCHHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 999999988877766666555 566666554443
No 342
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=94.73 E-value=0.44 Score=39.47 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=64.4
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~ 85 (216)
.+.++++||-.|+|. |..+..+++..+. ..+++++.++...+.+++. + .. .++..+-. ...
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~~----g-----~~--~~i~~~~~~~~~~v~~~ 250 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKEL----G-----AT--HVINPKEEDLVAAIREI 250 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc----C-----Cc--EEecCCCcCHHHHHHHH
Confidence 356789999988876 7888888888642 2699999998877666542 1 11 11211100 001
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
. ...+|+|+-..+.......+.+.++++|+++..-
T Consensus 251 ~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 251 T-GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred h-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeC
Confidence 1 3468999987666667788899999999988753
No 343
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.62 E-value=0.44 Score=34.87 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=64.1
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT 83 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (216)
..+++.+.....++.+|+-+||=+-+....- ...+..+++.+|.+...-... .+ .|..-|...
T Consensus 13 ~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~--------------~~-~F~fyD~~~ 75 (162)
T PF10237_consen 13 EFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFG--------------GD-EFVFYDYNE 75 (162)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcC--------------Cc-ceEECCCCC
Confidence 3444444433456789999999886654433 222455899999887653311 22 455555542
Q ss_pred CCC----CCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 84 GLL----HQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 84 ~~~----~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
... -.++||+|+++.|+-. ....+..++++++.+++.++..
T Consensus 76 p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 76 PEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred hhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 211 1368999999999832 2245556778888888876543
No 344
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=94.61 E-value=0.099 Score=42.33 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=61.6
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCC--
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGL-- 85 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~-- 85 (216)
.+.+|.+||-.|+ |. |..+..+++..+ .+|++++.+++..+.+++. | ... ++.. +.....
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~~----G-----a~~--vi~~~~~~~~~~v~~ 206 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKEL----G-----FDA--VFNYKTVSLEEALKE 206 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C-----CCE--EEeCCCccHHHHHHH
Confidence 3678999998884 33 888888898864 5899999888877766542 1 111 1111 111000
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
...+.+|+|+-...- .......+.|+++|+++..
T Consensus 207 ~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 207 AAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred HCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 112458999865554 5567888999999998764
No 345
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.61 E-value=0.33 Score=39.24 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.+.+|+-+|+|. |......++.. +.+|+.+|.++...+.+.+ .+ ..+...+.... .-..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~----~G--------~~~~~~~~l~~--~l~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITE----MG--------LSPFHLSELAE--EVGKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cC--------CeeecHHHHHH--HhCCCCEE
Confidence 578999999987 66656666665 4599999999776544432 11 22221110001 11358999
Q ss_pred EecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 95 YLSTYVPEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 95 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+...+..-+.+.+.+.++||+.++-....+.
T Consensus 215 I~t~p~~~i~~~~l~~~~~g~vIIDla~~pg 245 (296)
T PRK08306 215 FNTIPALVLTKEVLSKMPPEALIIDLASKPG 245 (296)
T ss_pred EECCChhhhhHHHHHcCCCCcEEEEEccCCC
Confidence 9876655455777788999888775555554
No 346
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.58 E-value=0.21 Score=42.39 Aligned_cols=88 Identities=16% Similarity=-0.014 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
-.|++|+-+|+|. |......++.. +.+|+.+|.++.....+... | ..+. +.... -..+|+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~----G--------~~v~--~l~ea---l~~aDV 270 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD----G--------FRVM--TMEEA---AELGDI 270 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc----C--------CEec--CHHHH---HhCCCE
Confidence 3789999999998 76666667665 45999999988754433221 1 1221 11111 124799
Q ss_pred EEecCCCCchHH-HHHhcCCCCeEEEEee
Q psy14962 94 IYLSTYVPEIPY-SILLQLKPGGRLVCGV 121 (216)
Q Consensus 94 i~~~~~~~~~~~-~~~~~L~~gG~lv~~~ 121 (216)
|+.......++. ...+.+|+|++++..-
T Consensus 271 VI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 271 FVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred EEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 998877666664 6788899999887653
No 347
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.58 E-value=0.031 Score=47.65 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=52.7
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHH----HHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCcc
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMRE----QCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFD 92 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D 92 (216)
..|+|..+|.|.++.+|... .|..+...+. .+...- ..|+ +- +..|..+.. .-..+||
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIy----dRGL-------IG-~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIY----DRGL-------IG-VYHDWCEAFSTYPRTYD 429 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhh----hccc-------ch-hccchhhccCCCCcchh
Confidence 36999999999999888755 3444433332 222221 1121 11 112322222 1246899
Q ss_pred EEEecCCCCc---------hHHHHHhcCCCCeEEEEee
Q psy14962 93 AIYLSTYVPE---------IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 93 ~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~ 121 (216)
+|.++..+.. ++-++-|+|+|||.+++..
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 9998877633 4567889999999999953
No 348
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.50 E-value=0.11 Score=42.64 Aligned_cols=100 Identities=24% Similarity=0.195 Sum_probs=62.8
Q ss_pred cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---CCC
Q psy14962 13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---LLH 87 (216)
Q Consensus 13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 87 (216)
.+++|.+||-.|+.. |.+++.+++..+ +.++++-.+++-.+.+++.... .-+++...|+... ...
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~~lGAd--------~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLKELGAD--------HVINYREEDFVEQVRELTG 208 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHhcCCC--------EEEcCCcccHHHHHHHHcC
Confidence 467899999999533 889999999975 2666666666655555443221 1122333333211 122
Q ss_pred CCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecC
Q psy14962 88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
+..+|+|+-.-.-..+ ....+.|+++|+++..-..
T Consensus 209 g~gvDvv~D~vG~~~~-~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 209 GKGVDVVLDTVGGDTF-AASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCCceEEEECCCHHHH-HHHHHHhccCCEEEEEecC
Confidence 3469999887665544 4577889999999886543
No 349
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=94.39 E-value=0.19 Score=41.07 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=61.6
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCC-eEEEeccCC---CCCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR-LHLRCRDGR---TGLLH 87 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~---~~~~~ 87 (216)
.+.++.+||-.|+|. |..+..+++..+. .++++++.++.....+++. + .+. +.....+.. .....
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~~~v~~~~~~~~~~i~~~~~ 232 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKKL----G-----ATHTVNSAKGDAIEQVLELTD 232 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh----C-----CCceeccccccHHHHHHHHhC
Confidence 356788988888866 7777778887641 4788899888776665532 1 111 111111110 01112
Q ss_pred CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
...+|+++...........+.+.|+++|+++..
T Consensus 233 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 233 GRGVDVVIEAVGIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhccCCcEEEEe
Confidence 346999997665445667778999999998864
No 350
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=94.39 E-value=1.1 Score=36.49 Aligned_cols=97 Identities=22% Similarity=0.163 Sum_probs=60.1
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCC---CCCC
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRT---GLLH 87 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~---~~~~ 87 (216)
..++.+|+-.|+|. |..+..+++..+ .+ |++++.++...+.+++. + ...+ .....+... ....
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~~----g-----~~~~v~~~~~~~~~~l~~~~~ 227 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKKM----G-----ATYVVNPFKEDVVKEVADLTD 227 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----C-----CcEEEcccccCHHHHHHHhcC
Confidence 46788888877765 777777888764 45 88888777666655432 1 1110 111111100 1122
Q ss_pred CCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
...+|+++....-......+.+.|+++|+++..-
T Consensus 228 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 228 GEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEc
Confidence 3468999987555556778899999999987653
No 351
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.36 E-value=0.13 Score=41.99 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=60.5
Q ss_pred CCCC--CeEEEEcC-CC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--cCCCCC-
Q psy14962 14 IQEG--AKVLDIGS-GS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--DGRTGL- 85 (216)
Q Consensus 14 ~~~~--~~vldiG~-G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~~~~- 85 (216)
++++ ++||-.|+ |. |..+..+++.. +. +|++++.+++..+.+++.+ | .+.+ +... +.....
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~l---G-----a~~v-i~~~~~~~~~~i~ 218 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSEL---G-----FDAA-INYKTDNVAERLR 218 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhc---C-----CcEE-EECCCCCHHHHHH
Confidence 5555 89999987 43 88888889886 44 7999998888776665532 1 1111 1111 110000
Q ss_pred -CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.....+|+|+....-. ......++|+++|+++..
T Consensus 219 ~~~~~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 219 ELCPEGVDVYFDNVGGE-ISDTVISQMNENSHIILC 253 (345)
T ss_pred HHCCCCceEEEECCCcH-HHHHHHHHhccCCEEEEE
Confidence 1124699999765544 357788999999999864
No 352
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.29 E-value=0.47 Score=38.75 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=62.9
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEec-cCC---CCC
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCR-DGR---TGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~-d~~---~~~ 85 (216)
.+++|++||-.|+ |. |..+..+++..+ .+|++++.+++..+.+++.+ | .+.+ ..... +.. ...
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~l---G-----a~~vi~~~~~~~~~~~i~~~ 217 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKL---G-----FDDAFNYKEEPDLDAALKRY 217 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc---C-----CceeEEcCCcccHHHHHHHh
Confidence 4678999999997 44 888888898864 58999988888777776522 1 1111 11111 111 011
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
. ...+|+|+-...- .......++|+++|+++..
T Consensus 218 ~-~~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 218 F-PNGIDIYFDNVGG-KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred C-CCCcEEEEECCCH-HHHHHHHHHhccCcEEEEe
Confidence 1 2468999876553 5567888999999998864
No 353
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.25 E-value=1.1 Score=39.07 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=65.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCCC
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGK---TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQAP 90 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~ 90 (216)
|++.|.|..||+|.+.....+..+. ...++|.+..+.+...+..++.-++. ..+......+|-... .....+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~---~~~t~~~~~~dtl~~~d~~~~~~ 293 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI---DYANFNIINADTLTTKEWENENG 293 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC---CccccCcccCCcCCCcccccccc
Confidence 6689999999999988765544321 13689999999999888877544331 011222223332221 112345
Q ss_pred ccEEEecCCCCc-------------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 91 FDAIYLSTYVPE-------------------------------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 91 ~D~i~~~~~~~~-------------------------------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
||.|+++.++.. ++..+...|++||+..+..++.
T Consensus 294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 888877765311 1245667899999876665544
No 354
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=94.19 E-value=0.64 Score=37.95 Aligned_cols=95 Identities=23% Similarity=0.270 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-CCCCCCc
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-LLHQAPF 91 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~ 91 (216)
+.++.+|+-.|+|. |..+..+++..+ .+++.++.+++..+.+++. + .+. ++....... ....+.+
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~----g-----~~~--vi~~~~~~~~~~~~~~~ 233 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALKL----G-----ADE--FIATKDPEAMKKAAGSL 233 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHc----C-----CcE--EecCcchhhhhhccCCc
Confidence 56788888888866 777777888754 5899999888877766432 1 111 111110000 0013468
Q ss_pred cEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 92 DAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
|+++...+.......+.+.|+++|.++..-
T Consensus 234 d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 234 DLIIDTVSASHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred eEEEECCCCcchHHHHHHHhcCCCEEEEEe
Confidence 999977665545678889999999988653
No 355
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=94.00 E-value=0.28 Score=34.10 Aligned_cols=91 Identities=20% Similarity=0.109 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCCchH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccE
Q psy14962 16 EGAKVLDIGSGSGFM-SCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~ 93 (216)
...+|+|+|-|.-.. +..+.+. +..|+++|+.+. .+. ..++++.-|....... -...|+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~---~a~-------------~g~~~v~DDif~P~l~iY~~a~l 73 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR---KAP-------------EGVNFVVDDIFNPNLEIYEGADL 73 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S--------------------STTEE---SSS--HHHHTTEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc---ccc-------------cCcceeeecccCCCHHHhcCCcE
Confidence 345999999999554 4444444 469999999987 111 2467888887643321 145899
Q ss_pred EEecCCCCchHHHHHhcCCC-CeEEEEeecCCC
Q psy14962 94 IYLSTYVPEIPYSILLQLKP-GGRLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~ 125 (216)
|++-.+-+.+...+.++-+. |.-+++.....+
T Consensus 74 IYSiRPP~El~~~il~lA~~v~adlii~pL~~e 106 (127)
T PF03686_consen 74 IYSIRPPPELQPPILELAKKVGADLIIRPLGGE 106 (127)
T ss_dssp EEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred EEEeCCChHHhHHHHHHHHHhCCCEEEECCCCC
Confidence 99998888776666655554 677777655543
No 356
>KOG2352|consensus
Probab=93.98 E-value=0.12 Score=43.91 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-------CCCC
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-------GLLH 87 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~~ 87 (216)
..+.++|-+|-|.|.+...+-..++ ...+++++++|.++..|.+.+.-.. ..+.++...|+.. .-..
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQ-----SDRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhh-----hhhhhhhHhhchHHHHHHhhcccc
Confidence 4567899999999999887766654 4699999999999999998764311 1334555555431 1113
Q ss_pred CCCccEEEecCCC---------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 88 QAPFDAIYLSTYV---------------PEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 88 ~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+..||+++.+-.- ..++..++..|.|.|.+++..-++.
T Consensus 368 ~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred ccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 4679999864332 1144678899999999998765553
No 357
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=93.95 E-value=1 Score=37.32 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------CC
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------GL 85 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~ 85 (216)
+.++.+||-.|+|. |..+..+++..+ .. +++++.+++..+.+++. + .. .++..+-.. ..
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~~----g-----~~--~v~~~~~~~~~~~l~~~ 251 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKEL----G-----AT--HTVNAAKEDAVAAIREI 251 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHh----C-----Cc--eEecCCcccHHHHHHHH
Confidence 46788888888765 777788888764 35 88898888777666432 1 11 122111100 01
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.....+|+|+....-........+.|+++|.++...
T Consensus 252 ~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 252 TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 123469999976554336677889999999988754
No 358
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.85 E-value=0.65 Score=34.11 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=60.2
Q ss_pred EEcCCCchHHHHHHHHhCCCcEEEEE--eCCHHHHHH---HHHHHHHhCCCCCCCCCeEE-EeccCCCCC----CCCCCc
Q psy14962 22 DIGSGSGFMSCVFAELVGKTGRVFGV--EHMREQCED---AWETVMRIRPDLLNDGRLHL-RCRDGRTGL----LHQAPF 91 (216)
Q Consensus 22 diG~G~G~~~~~l~~~~~~~~~v~~~--D~~~~~~~~---a~~~~~~~~~~~~~~~~~~~-~~~d~~~~~----~~~~~~ 91 (216)
-+|=|.=.++..+++..+....++++ |..++..+. +..++.... ..++.+ ...|+.... .....|
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-----~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-----ELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-----hcCCccccCCCCCcccccccccCCcC
Confidence 46777778889999987645577666 444433332 223333311 123332 234554322 134789
Q ss_pred cEEEecCCCCc-------------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 92 DAIYLSTYVPE-------------------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 92 D~i~~~~~~~~-------------------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|.|+-+.|... ++..+.++|+++|.+.++.....
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99998877522 34778899999999999876654
No 359
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.82 E-value=0.27 Score=38.59 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=57.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHh---C-CCcEEEEEeCCHH--------------------------HHHHHHHHHHHhCC
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELV---G-KTGRVFGVEHMRE--------------------------QCEDAWETVMRIRP 66 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~---~-~~~~v~~~D~~~~--------------------------~~~~a~~~~~~~~~ 66 (216)
...|+|+||--|..++.++..+ + ++-+++++|.=+. .++..++++.+.+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g- 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG- 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT-
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC-
Confidence 4589999999998776654432 2 2347888873111 1222333332222
Q ss_pred CCCCCCCeEEEeccCCCCCC--CCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeecCC
Q psy14962 67 DLLNDGRLHLRCRDGRTGLL--HQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 67 ~~~~~~~~~~~~~d~~~~~~--~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+..+++.++.+.+.+..+ +..++-++.++..+.. .++.++..|.|||++++...+.
T Consensus 154 --l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 --LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp --TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred --CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 224689999998764333 2345666666666543 5678889999999999965443
No 360
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=2.6 Score=33.09 Aligned_cols=108 Identities=14% Similarity=0.202 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCC
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGK---TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQ 88 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 88 (216)
.-+++.+|+|+|+-.-+..+...+.+ -...+.+|+|...+....+.+.... ..-.+.-+++|.+... +..
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y----~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY----PGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC----CCCeEeehhhhHHHHHhcccCC
Confidence 44789999999999888877766543 2478999999998876554443322 1234556667765221 222
Q ss_pred CCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 89 APFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 89 ~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
+.==.++....+.+ ++.++...++||-++++-+.....
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 22222333333322 568999999999999997766543
No 361
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=93.79 E-value=1.4 Score=36.17 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CC--CC
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GL--LH 87 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~--~~ 87 (216)
+.++.+||-.|+|. |..+..+++..+. ..|+.++.+++....+.+. + .. .++...-.. .. ..
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~~~ 240 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKAA----G-----AD--VVVNGSDPDAAKRIIKAA 240 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHh----C-----Cc--EEecCCCccHHHHHHHHh
Confidence 34788999888876 7788888888642 2788888888877666432 1 11 111111000 00 01
Q ss_pred CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.+.+|+++...+.........+.|+++|+++..
T Consensus 241 ~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 241 GGGVDAVIDFVNNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEE
Confidence 126899998766556778889999999998864
No 362
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=93.78 E-value=0.67 Score=38.40 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=62.6
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--cCC---CCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--DGR---TGLL 86 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~---~~~~ 86 (216)
.+.++.+||-.|+|. |..+..+++..+. ..+++++.+++..+.+++.... .-+..... +.. ....
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~~~l~~~~ 250 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQLGAT--------ECINPRDQDKPIVEVLTEMT 250 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHhCCC--------eecccccccchHHHHHHHHh
Confidence 467889999888876 7777888888642 2588889888877777442110 00111111 100 0011
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCC-CCeEEEEee
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLK-PGGRLVCGV 121 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~-~gG~lv~~~ 121 (216)
.+.+|+|+.............+.|+ ++|+++..-
T Consensus 251 -~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 -DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred -CCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEe
Confidence 2458999976655556677888899 999988753
No 363
>PRK10083 putative oxidoreductase; Provisional
Probab=93.76 E-value=0.27 Score=40.08 Aligned_cols=99 Identities=16% Similarity=0.043 Sum_probs=60.4
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHH-hCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCCCCC-CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAEL-VGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRTGLL-HQ 88 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~-~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~-~~ 88 (216)
.+.++.+|+-.|+|. |..+..+++. .+. ..+++++.+++..+.+++... +.+ .....+...... ..
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~~Ga---------~~~i~~~~~~~~~~~~~~g 226 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKESGA---------DWVINNAQEPLGEALEEKG 226 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHhCC---------cEEecCccccHHHHHhcCC
Confidence 467899999999876 6777777774 342 258889988887776654311 111 000001100011 11
Q ss_pred CCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
..+|+++....-........+.|+++|+++..-
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 235688776555556778889999999998753
No 364
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.72 E-value=0.49 Score=37.56 Aligned_cols=102 Identities=17% Similarity=0.088 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC--CCccE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~ 93 (216)
.|..|+-+| -.-..++.++-. +..-+|..+|+++..+....+.....| .+|+..+.-|.....+.+ +.||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plpe~~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLPEDLKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccChHHHHhhCCe
Confidence 467789888 333333333332 222489999999999999999888865 477999999988766543 78999
Q ss_pred EEecCCCCc-----hHHHHHhcCCCC---eEEEEeecCC
Q psy14962 94 IYLSTYVPE-----IPYSILLQLKPG---GRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~~-----~~~~~~~~L~~g---G~lv~~~~~~ 124 (216)
.+.+++-.- ++..-...||.- |++.++..+.
T Consensus 225 fiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~res 263 (354)
T COG1568 225 FITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRES 263 (354)
T ss_pred eecCchhhHHHHHHHHhccHHHhcCCCccceEeeeeccc
Confidence 999887432 233333455555 7787765544
No 365
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.71 E-value=1 Score=36.83 Aligned_cols=97 Identities=23% Similarity=0.187 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCC--CCCCCC
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGR--TGLLHQ 88 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~--~~~~~~ 88 (216)
..++.+||-.|+|. |..+..+++..+ . .+++++.+++....+++.-. +.+ .....+.. ......
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~ 229 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKKMGA---------DVVINPREEDVVEVKSVTDG 229 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCc---------ceeeCcccccHHHHHHHcCC
Confidence 46788888888766 778888888764 4 68888777766655554211 110 00011110 011223
Q ss_pred CCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
+.+|+++....-......+.+.|+++|.++...
T Consensus 230 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 230 TGVDVVLEMSGNPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence 468999987655556678889999999987653
No 366
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=93.70 E-value=0.81 Score=37.30 Aligned_cols=96 Identities=22% Similarity=0.264 Sum_probs=61.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-----CCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-----TGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~ 85 (216)
.+.++.+|+..|+|. |..+..+++..+ .. +++++.++...+.+++. + . ..++...-. ...
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~~----g-----~--~~~~~~~~~~~~~~~~~ 222 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAREL----G-----A--DDTINPKEEDVEKVREL 222 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHc----C-----C--CEEecCccccHHHHHHH
Confidence 357888999888776 778888888764 45 89998887766655331 1 1 111111100 011
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.....+|+++...........+.+.|+++|+++...
T Consensus 223 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 223 TEGRGADLVIEAAGSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence 123459999987555556788889999999987653
No 367
>KOG1098|consensus
Probab=93.69 E-value=0.071 Score=46.56 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=34.8
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCH
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMR 51 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~ 51 (216)
.+.++..|||+||.+|.+....++.++.+..|+|+|+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 467889999999999999999999988888999999765
No 368
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.69 E-value=0.19 Score=41.95 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
++.+|+-+|+|. |..+...++..+ .+|+.+|.+++.++.+...+. ..+.....+.......-..+|+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g---------~~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFG---------GRIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcC---------ceeEeccCCHHHHHHHHccCCEE
Confidence 346799999987 777777777764 489999999876655443321 11111111100000001358999
Q ss_pred EecCCC-----Cc-hHHHHHhcCCCCeEEEEeecCC
Q psy14962 95 YLSTYV-----PE-IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 95 ~~~~~~-----~~-~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+..... +. +.+.+.+.++|++.++-....+
T Consensus 235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~ 270 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQ 270 (370)
T ss_pred EEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCC
Confidence 987533 22 3367778899998887655444
No 369
>PTZ00357 methyltransferase; Provisional
Probab=93.64 E-value=0.6 Score=41.79 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=59.5
Q ss_pred eEEEEcCCCchHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHH---HHhCC-CCCCCCCeEEEeccCCCCCCC----
Q psy14962 19 KVLDIGSGSGFMSCVFAE---LVGKTGRVFGVEHMREQCEDAWETV---MRIRP-DLLNDGRLHLRCRDGRTGLLH---- 87 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~---~~~~~~~v~~~D~~~~~~~~a~~~~---~~~~~-~~~~~~~~~~~~~d~~~~~~~---- 87 (216)
.|+-+|+|-|-+.....+ ..+-..+|+++|.++..+.....+. ..+.. .......|+++..|+......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999987655443 3333458999999976544443332 12210 000134689999999743221
Q ss_pred -------CCCccEEEec--------CCCCchHHHHHhcCCC----CeE
Q psy14962 88 -------QAPFDAIYLS--------TYVPEIPYSILLQLKP----GGR 116 (216)
Q Consensus 88 -------~~~~D~i~~~--------~~~~~~~~~~~~~L~~----gG~ 116 (216)
-+++|+|++- ...++.+.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1369999862 1124455666777776 776
No 370
>PLN02494 adenosylhomocysteinase
Probab=93.55 E-value=0.36 Score=41.38 Aligned_cols=89 Identities=13% Similarity=0.003 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
-.|++|+-+|+|. |......++.+ +.+|+++|.++.....+... + ..+. +... .. ...|+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~----G--------~~vv--~leE-al--~~ADV 312 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALME----G--------YQVL--TLED-VV--SEADI 312 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhc----C--------Ceec--cHHH-HH--hhCCE
Confidence 4689999999998 77766667665 45899999988654333221 1 1121 1111 11 24799
Q ss_pred EEecCCCCchH-HHHHhcCCCCeEEEEeec
Q psy14962 94 IYLSTYVPEIP-YSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~~~ 122 (216)
|++.....+++ ....+.+|+|++++-.-.
T Consensus 313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 99877776654 778889999999987643
No 371
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.54 E-value=1.9 Score=32.97 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=66.0
Q ss_pred HHHHHhcccCCCCCeEEEEcCCCc----hHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc
Q psy14962 5 RIIELLEPKIQEGAKVLDIGSGSG----FMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD 80 (216)
Q Consensus 5 ~~~~~l~~~~~~~~~vldiG~G~G----~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d 80 (216)
.++..++.. .....++++.|+.| .+++..|.+ ..+++++.+-++++.+...++.+...++ .+.+.|+.++
T Consensus 31 EfISAlAAG-~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~----~~~vEfvvg~ 104 (218)
T PF07279_consen 31 EFISALAAG-WNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGL----SDVVEFVVGE 104 (218)
T ss_pred HHHHHHhcc-ccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhccc----cccceEEecC
Confidence 445555422 23456888866543 233333333 2466999998888887777777766443 1446888877
Q ss_pred CCC-CCCCCCCccEEEecCCCCchHHHHHhcCC--CCeEEEEe
Q psy14962 81 GRT-GLLHQAPFDAIYLSTYVPEIPYSILLQLK--PGGRLVCG 120 (216)
Q Consensus 81 ~~~-~~~~~~~~D~i~~~~~~~~~~~~~~~~L~--~gG~lv~~ 120 (216)
... ....-..+|.++.+.-.+.....+.+.++ |.|-+++.
T Consensus 105 ~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~ 147 (218)
T PF07279_consen 105 APEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVC 147 (218)
T ss_pred CHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEE
Confidence 432 22223568999999888777645555444 34655553
No 372
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=93.53 E-value=1.3 Score=35.98 Aligned_cols=95 Identities=21% Similarity=0.178 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-----CCCCC
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-----TGLLH 87 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~~ 87 (216)
+.++.+||-.|+|. |..+..+++..+ ..+|++++.+++..+.+++. + .+ .++..+-. .....
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~i~~~~~ 232 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAERL----G-----AD--HVLNASDDVVEEVRELTG 232 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHh----C-----Cc--EEEcCCccHHHHHHHHhC
Confidence 56789999999776 677777788764 25889998888766655332 1 11 11111100 01112
Q ss_pred CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
...+|+|+.............+.|+++|+++..
T Consensus 233 ~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 233 GRGADAVIDFVGSDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEE
Confidence 246999998766555677888999999999865
No 373
>PLN02702 L-idonate 5-dehydrogenase
Probab=93.50 E-value=1.4 Score=36.45 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=62.1
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe---ccCCCC---C
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC---RDGRTG---L 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~d~~~~---~ 85 (216)
.+.++.+|+-.|+|. |..+..+++..+. ..++++|.++...+.+++. + .+.+.... .+.... .
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~~~~~~~~~~~~~~~~~~~~ 247 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAKQL----G-----ADEIVLVSTNIEDVESEVEEI 247 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh----C-----CCEEEecCcccccHHHHHHHH
Confidence 457888999888865 7777888888643 2588889888776665542 1 11111110 111000 0
Q ss_pred --CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 --LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 --~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
...+.+|+|+....-........+.|+++|+++..
T Consensus 248 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 248 QKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 11246899998766555678889999999998764
No 374
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.14 E-value=0.64 Score=41.91 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHHHH----------HHHHhCCCC-CC-
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELV------GK-----TGRVFGVEHMR---EQCEDAWE----------TVMRIRPDL-LN- 70 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~~~---~~~~~a~~----------~~~~~~~~~-~~- 70 (216)
.-+|+|+|-|+|.-.....+.. ++ .-+++++|..| +.+..+.+ .+.+..... .+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3579999999999766555433 12 23789999754 22222211 111111000 00
Q ss_pred ------CC--CeEEEeccCCCCCCC-CCCccEEEecCCCC---------chHHHHHhcCCCCeEEEEee
Q psy14962 71 ------DG--RLHLRCRDGRTGLLH-QAPFDAIYLSTYVP---------EIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 71 ------~~--~~~~~~~d~~~~~~~-~~~~D~i~~~~~~~---------~~~~~~~~~L~~gG~lv~~~ 121 (216)
.. ++++..+|+...... ...+|+++.+.-.+ .++..+.++++|||++.-.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 11 234555676533221 24699999986543 36789999999999998644
No 375
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.09 E-value=0.94 Score=36.68 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=65.2
Q ss_pred CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
..+|.-+|.|. |.-+..+|-.+ ++.|+.+|.|...+......+. .++..+-.........-.+.|++|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~---------~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG---------GRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC---------ceeEEEEcCHHHHHHHhhhccEEE
Confidence 45788899988 77777777654 5699999999988776655432 455555444321111123578887
Q ss_pred ecCCCC-----c-hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 96 LSTYVP-----E-IPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 96 ~~~~~~-----~-~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
..-.++ . ..+++.+.+|||+.++=....+..
T Consensus 237 gaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGG 273 (371)
T COG0686 237 GAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGG 273 (371)
T ss_pred EEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCC
Confidence 644432 2 458889999999999766555543
No 376
>PRK11524 putative methyltransferase; Provisional
Probab=92.99 E-value=0.14 Score=41.06 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=37.6
Q ss_pred CCeEEEeccCCCC--CCCCCCccEEEecCCCC----------------------chHHHHHhcCCCCeEEEEeecC
Q psy14962 72 GRLHLRCRDGRTG--LLHQAPFDAIYLSTYVP----------------------EIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 72 ~~~~~~~~d~~~~--~~~~~~~D~i~~~~~~~----------------------~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
.+..++++|.... ..++++||+|+++.++. .++..+.++|||||.+++.+..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4456788887642 23457899999988752 2457888999999999986543
No 377
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=92.91 E-value=1 Score=37.66 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=61.0
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-----cCC---C
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-----DGR---T 83 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~---~ 83 (216)
.+++|.+||-.|+|. |..+..+++..+. ..|++++.+++..+.+++. + .+.+ +... +.. .
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~~~----g-----~~~~-v~~~~~~~~~~~~~v~ 268 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAKEM----G-----ADYV-FNPTKMRDCLSGEKVM 268 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc----C-----CCEE-EcccccccccHHHHHH
Confidence 467899998888877 7777888888642 2799999888765555442 1 1111 1111 100 0
Q ss_pred CCCCCCCccEEEecCCCC-chHHHHHhcCCCCeEEEEe
Q psy14962 84 GLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~lv~~ 120 (216)
....+..+|+|+....-. .......+.|+++|+++..
T Consensus 269 ~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 269 EVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred HhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEE
Confidence 112234689998765532 3567788999999999864
No 378
>KOG2078|consensus
Probab=92.87 E-value=0.081 Score=44.22 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=50.5
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
..++|..|.|+.||.|-+++-++++ +..|++.|.++++++..+.++..+-. .+.++.....|+.
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv---~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKV---DPSAIEIFNMDAK 309 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhcccccc---chhheeeecccHH
Confidence 3578999999999999999998887 47999999999999999888765332 1234666666653
No 379
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=92.84 E-value=1.3 Score=36.08 Aligned_cols=97 Identities=16% Similarity=0.132 Sum_probs=61.7
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC-CC---CC-C
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG-RT---GL-L 86 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~---~~-~ 86 (216)
.+.++.+||-.|+|. |..+..+++... +.++++++.+++..+.+++. + .+. ++.... .. .. .
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~~----g-----~~~--v~~~~~~~~~~~~v~~ 226 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKEV----G-----ADL--TINSKRVEDVAKIIQE 226 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHHc----C-----CcE--EecccccccHHHHHHH
Confidence 467899999999766 777788888631 45899999999888777432 1 111 111110 00 00 0
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
..+.+|.++.+...........+.|+++|.++..-
T Consensus 227 ~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 227 KTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred hcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEEe
Confidence 11247855555555567788899999999988753
No 380
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=92.76 E-value=2 Score=35.00 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=60.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~ 85 (216)
.+.++.+||-.|+|. |..+..+++..+. ..+++++.+++....+.+. + ...+..+-. ...
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~~----g--------~~~~~~~~~~~~~~l~~~ 230 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAAL----G--------AEPINFEDAEPVERVREA 230 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHHh----C--------CeEEecCCcCHHHHHHHH
Confidence 356788998888766 7777778887541 3788888777665554431 1 111111111 001
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.....+|+++.............+.++++|+++..-
T Consensus 231 ~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 231 TEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred hCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEC
Confidence 123468999986665556778889999999987653
No 381
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=92.75 E-value=1.7 Score=35.94 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=61.7
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CC---CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GR---TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~ 84 (216)
.+.++.+||-.|+|. |..+..+++..+ .. |++++.++...+.+++. + . ..++..+ .. ..
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G--~~~Vi~~~~~~~~~~~~~~~----g-----~--~~vv~~~~~~~~~~l~~ 245 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAG--ASRIIAVDPVPEKLELARRF----G-----A--THTVNASEDDAVEAVRD 245 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHHh----C-----C--eEEeCCCCccHHHHHHH
Confidence 457888998888865 778788888764 44 88988888776655421 1 1 1122111 10 01
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+|+++....-........+.|+++|+++...
T Consensus 246 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 246 LTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred HcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEe
Confidence 1123458999876655556678889999999987653
No 382
>KOG1099|consensus
Probab=92.67 E-value=0.089 Score=40.43 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=60.5
Q ss_pred CeEEEEcCCCchHHHHHHHHhCC----C-c---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGK----T-G---RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---- 85 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~----~-~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 85 (216)
.+|+|+++.+|.++..+.+++-. . . .++++|+.+-. ....+.-+.+|.....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------------PI~GV~qlq~DIT~~stae~ 106 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------------PIEGVIQLQGDITSASTAEA 106 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------------ccCceEEeecccCCHhHHHH
Confidence 57999999999999999887632 1 1 38999975421 1244666677765321
Q ss_pred ----CCCCCccEEEecCCC-----Cch------------HHHHHhcCCCCeEEEEeecCC
Q psy14962 86 ----LHQAPFDAIYLSTYV-----PEI------------PYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 86 ----~~~~~~D~i~~~~~~-----~~~------------~~~~~~~L~~gG~lv~~~~~~ 124 (216)
...++.|+|+|+..- |.+ +.-...+|+|||.||.-..-.
T Consensus 107 Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 107 IIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred HHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 123578999998763 221 133447999999999865443
No 383
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=92.63 E-value=0.53 Score=40.42 Aligned_cols=90 Identities=14% Similarity=-0.076 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
-.|.+|+-+|+|. |......++.+ +.+|+.+|.++.....+.. .| ..+. +.... -...|+
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G--------~~~~--~leel---l~~ADI 312 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM----EG--------YQVV--TLEDV---VETADI 312 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cC--------ceec--cHHHH---HhcCCE
Confidence 3689999999998 66555555554 4589999888765433322 11 2222 11111 134799
Q ss_pred EEecCCCCchH-HHHHhcCCCCeEEEEeecC
Q psy14962 94 IYLSTYVPEIP-YSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~~~~ 123 (216)
|++...-.+++ ......+|||++++-.-..
T Consensus 313 VI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 99887666665 5788899999999876433
No 384
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=92.62 E-value=2.8 Score=34.20 Aligned_cols=97 Identities=25% Similarity=0.177 Sum_probs=61.8
Q ss_pred CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCC---CCCC
Q psy14962 14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGR---TGLL 86 (216)
Q Consensus 14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~~ 86 (216)
..+|.+|+-.|+|. |..+..+++..+. ..+++++.+++..+.+++. + .+. ++.. +.. ....
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~l----g-----~~~--~~~~~~~~~~~~~~~~~ 228 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARKM----G-----ATR--AVNVAKEDLRDVMAELG 228 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHh----C-----CcE--EecCccccHHHHHHHhc
Confidence 35788988888876 7788888887642 2678888777766655442 1 111 1111 110 0112
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 122 (216)
....+|+|+...........+.+.|+++|.++..-.
T Consensus 229 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 229 MTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEec
Confidence 234689999866655667788899999999988643
No 385
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.54 E-value=0.88 Score=30.80 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=54.8
Q ss_pred CCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCccEEEecCC
Q psy14962 25 SGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPFDAIYLSTY 99 (216)
Q Consensus 25 ~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~i~~~~~ 99 (216)
||.|..+..+++.+.... .|+.+|.+++..+.+++. .+.++.+|...... .-..++.+++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence 455566666666553344 899999999987766542 36789999763221 1246788887765
Q ss_pred CCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962 100 VPE---IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 100 ~~~---~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
-.. ......+.+.|...++.....+
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 433 2234456667778887766554
No 386
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.54 E-value=0.052 Score=36.70 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=25.0
Q ss_pred CccEEEecCCCCc------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 90 PFDAIYLSTYVPE------------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 90 ~~D~i~~~~~~~~------------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.||+|+|-....+ +++.+++.|+|||.+++...+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 4899998777533 5689999999999999965444
No 387
>KOG2360|consensus
Probab=92.43 E-value=0.48 Score=39.25 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC--CCc
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APF 91 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~ 91 (216)
-.+|..|+|.+|-+|.-+.+++....+.++++++|.+....+..++.+...| ...+....+|+.....+. ...
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag-----~~~~~~~~~df~~t~~~~~~~~v 285 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG-----VSIVESVEGDFLNTATPEKFRDV 285 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC-----CCccccccccccCCCCcccccce
Confidence 3578999999999999999999887767799999999999988888877755 456677788877542211 334
Q ss_pred cEEEecCC
Q psy14962 92 DAIYLSTY 99 (216)
Q Consensus 92 D~i~~~~~ 99 (216)
..|+++.+
T Consensus 286 ~~iL~Dps 293 (413)
T KOG2360|consen 286 TYILVDPS 293 (413)
T ss_pred eEEEeCCC
Confidence 55666555
No 388
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=92.42 E-value=1.7 Score=35.30 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=61.5
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~ 84 (216)
.+.++.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.+.+. + .+ .++..+-. ..
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~i~~ 228 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKKL----G-----AD--YTIDAAEEDLVEKVRE 228 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----C-----Cc--EEecCCccCHHHHHHH
Confidence 467889998888764 777777888754 46 88888888877665431 1 11 11111100 01
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+|+|+....-........+.|+++|+++...
T Consensus 229 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 229 LTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred HhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEe
Confidence 1123458999976655556677889999999988643
No 389
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.38 E-value=0.071 Score=38.65 Aligned_cols=95 Identities=22% Similarity=0.206 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCCCC-CCCCCccEE
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRTGL-LHQAPFDAI 94 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~-~~~~~~D~i 94 (216)
|.+++-+|+..=+.-....+.. ..+|..+|.++--++ +.+. +++ .+...|+...+ .-.++||.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G--A~~iltveyn~L~i~---~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~ 67 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG--AAKILTVEYNKLEIQ---EEFR---------DRLSSILPVDFAKNWQKYAGSFDFA 67 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC--CceEEEEeecccccC---cccc---------cccccccHHHHHHHHHHhhccchhh
Confidence 5778888888665555444442 347888886542111 0000 111 12222322111 113568888
Q ss_pred EecCCCCc-----------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 95 YLSTYVPE-----------------IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 95 ~~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.+...+++ .+..+.++|||||.+++.++-..
T Consensus 68 as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 68 ASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred heechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 77666543 24678899999999999887664
No 390
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=92.36 E-value=2.2 Score=34.68 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=60.5
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---------
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--------- 82 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--------- 82 (216)
.+.++.+||-.|+|. |..+..+++..+. ..+++++.+++..+.+++.- . ..++..+-.
T Consensus 158 ~~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~g---------~--~~~i~~~~~~~~~~~~~~ 225 (341)
T cd08262 158 RLTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASDFSPERRALALAMG---------A--DIVVDPAADSPFAAWAAE 225 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHcC---------C--cEEEcCCCcCHHHHHHHH
Confidence 467889999888765 6677777887643 24788888888777665421 1 111111100
Q ss_pred CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+.+|+++-...-........+.++++|+++...
T Consensus 226 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 226 LARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred HHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEC
Confidence 001123458999865443345677788999999988654
No 391
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.06 E-value=1.4 Score=34.09 Aligned_cols=93 Identities=16% Similarity=0.027 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCchHH-HHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 16 EGAKVLDIGSGSGFMS-CVFAELVGKTGRVFGV--EHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~-~~l~~~~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.+.+||-+|+|.-..- ...+... ++.|+.+ +++++..+.+. ..++.++..+...... ..++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~------------~~~i~~~~r~~~~~dl--~g~~ 87 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKK------------YGNLKLIKGNYDKEFI--KDKH 87 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHh------------CCCEEEEeCCCChHHh--CCCc
Confidence 5779999999984433 2222222 4455544 78777655432 1568888766653333 3478
Q ss_pred EEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 93 AIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 93 ~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
+|++...-+.+-..+.+..+.-|.++..+..+
T Consensus 88 LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p 119 (223)
T PRK05562 88 LIVIATDDEKLNNKIRKHCDRLYKLYIDCSDY 119 (223)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCeEEEcCCc
Confidence 89888777777777887777767666655544
No 392
>KOG1197|consensus
Probab=91.98 E-value=1.4 Score=34.76 Aligned_cols=97 Identities=24% Similarity=0.268 Sum_probs=64.1
Q ss_pred cCCCCCeEEEE-cC-CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CCCC
Q psy14962 13 KIQEGAKVLDI-GS-GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GLLH 87 (216)
Q Consensus 13 ~~~~~~~vldi-G~-G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~ 87 (216)
++++|.+||-- .+ |-|.+.+.+++..+ ..+++.-.+.+-.+.|+++-.. ..+.+...|... ....
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~--a~tI~~asTaeK~~~akenG~~--------h~I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVG--AHTIATASTAEKHEIAKENGAE--------HPIDYSTEDYVDEVKKITN 212 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcC--cEEEEEeccHHHHHHHHhcCCc--------ceeeccchhHHHHHHhccC
Confidence 57899998643 33 44888899998864 4888887777777777776443 335566666542 2222
Q ss_pred CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
....|+++=+-+-. .+..-..+||++|.++--
T Consensus 213 gKGVd~vyDsvG~d-t~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 213 GKGVDAVYDSVGKD-TFAKSLAALKPMGKMVSF 244 (336)
T ss_pred CCCceeeeccccch-hhHHHHHHhccCceEEEe
Confidence 34577776544433 345667899999998763
No 393
>KOG1198|consensus
Probab=91.96 E-value=0.27 Score=40.61 Aligned_cols=102 Identities=17% Similarity=0.122 Sum_probs=63.9
Q ss_pred cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--C
Q psy14962 13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--Q 88 (216)
Q Consensus 13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~ 88 (216)
...+|..||-+|.++ |..++.+|+..+ ...+....+.+..+.+++.-.. .-+++...+......+ .
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~lGAd--------~vvdy~~~~~~e~~kk~~~ 223 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKKLGAD--------EVVDYKDENVVELIKKYTG 223 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHHcCCc--------EeecCCCHHHHHHHHhhcC
Confidence 367888999988876 678888899864 3455555677777666654221 1122333333222222 4
Q ss_pred CCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
..||+|+-+..-......+...+++|+..++.....
T Consensus 224 ~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~ 259 (347)
T KOG1198|consen 224 KGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGD 259 (347)
T ss_pred CCccEEEECCCCCccccchhhhccCCceEEEEeccc
Confidence 679999987776666667777777777766655443
No 394
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.95 E-value=0.54 Score=37.97 Aligned_cols=107 Identities=16% Similarity=0.034 Sum_probs=60.8
Q ss_pred CeEEEEcCCCchHHHHHHHHh-C------------------CCcEEEEEeCCH--HHHHHHHHHHHHh------------
Q psy14962 18 AKVLDIGSGSGFMSCVFAELV-G------------------KTGRVFGVEHMR--EQCEDAWETVMRI------------ 64 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~-~------------------~~~~v~~~D~~~--~~~~~a~~~~~~~------------ 64 (216)
.+||.||.|.|.-.+.++..+ . +...++.+|+.+ ..+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999988776666555 0 113789999765 3444444433332
Q ss_pred CCCCCCCCCeEEEeccCCCCCCCC-------CCccEEEecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962 65 RPDLLNDGRLHLRCRDGRTGLLHQ-------APFDAIYLSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~~~~~~~-------~~~D~i~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.......-++.|.+.|+.....++ ...++|.....+.+ ++..+...++||..+++.....
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 000111234677788875433211 12455543333322 4467778889988887765433
No 395
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.80 E-value=1 Score=34.29 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.|.+||-+|.|. |.--...+.. .++.|+.++.... ....+.... .++.++..+...... ..+|+|
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~--~~l~~l~~~--------~~i~~~~~~~~~~dl--~~~~lV 73 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE--SELTLLAEQ--------GGITWLARCFDADIL--EGAFLV 73 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC--HHHHHHHHc--------CCEEEEeCCCCHHHh--CCcEEE
Confidence 478999999987 4333333333 2558888865432 111122111 468887777653322 358999
Q ss_pred EecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 95 YLSTYVPEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 95 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
++....+..-..+....+.-|.++-.+..+.
T Consensus 74 i~at~d~~ln~~i~~~a~~~~ilvn~~d~~e 104 (205)
T TIGR01470 74 IAATDDEELNRRVAHAARARGVPVNVVDDPE 104 (205)
T ss_pred EECCCCHHHHHHHHHHHHHcCCEEEECCCcc
Confidence 9988877666777777777788886555553
No 396
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.73 E-value=3.4 Score=31.55 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------- 86 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 86 (216)
++++|+-.|++ |.++..+++.+ ..+.+|++++.+++..+...+.... ..++.++.+|......
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCCCCHHHHHHHHHHH
Confidence 46789999885 44444444433 2356999999988766655444333 1357778888753210
Q ss_pred --CCCCccEEEecCC
Q psy14962 87 --HQAPFDAIYLSTY 99 (216)
Q Consensus 87 --~~~~~D~i~~~~~ 99 (216)
..+.+|.++.+..
T Consensus 76 ~~~~~~id~ii~~ag 90 (238)
T PRK05786 76 AKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHhCCCCEEEEcCC
Confidence 0134688876654
No 397
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=91.52 E-value=3.5 Score=32.89 Aligned_cols=96 Identities=22% Similarity=0.129 Sum_probs=60.0
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---C---C
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---T---G 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~---~ 84 (216)
.+.++.+|+-.|+|. |..+..+++..+ .+ ++++..+++..+.+.+. + .. .++..... . .
T Consensus 126 ~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~l~~ 192 (312)
T cd08269 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALAREL----G-----AT--EVVTDDSEAIVERVRE 192 (312)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----C-----Cc--eEecCCCcCHHHHHHH
Confidence 457888988888755 677777788764 46 88888777666543321 1 11 12211100 0 0
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+|+++.............+.|+++|.++...
T Consensus 193 ~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 193 LTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred HcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence 1123458999987655556677889999999988653
No 398
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=91.45 E-value=3.5 Score=33.76 Aligned_cols=96 Identities=18% Similarity=0.032 Sum_probs=60.3
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---C---CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---T---GL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~---~~ 85 (216)
.+.++.+|+-.|+|. |..+..+++..+. ..+++++.++...+.+.+. + .. .++...-. . ..
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~--~v~~~~~~~~~~~~~~~ 238 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARKF----G-----AD--VVLNPPEVDVVEKIKEL 238 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHHc----C-----Cc--EEecCCCcCHHHHHHHH
Confidence 467888888877766 7777888888652 3578889888766555432 1 11 11111100 0 01
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.....+|+++....-........+.++++|+++..
T Consensus 239 ~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 239 TGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred hCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 12235899987655445667788999999998774
No 399
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.39 E-value=2.9 Score=34.11 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=60.6
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TGL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~ 85 (216)
.+.++.+|+-.|+|. |..+..+++..+. ..+++++.++...+.+++. + .+ .++...-. ...
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~~----g-----a~--~v~~~~~~~~~~~i~~~ 232 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALAREF----G-----AT--DIVAERGEEAVARVREL 232 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----C-----Cc--eEecCCcccHHHHHHHh
Confidence 456788888888877 7788888888642 2488898887655544432 1 11 11111100 001
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.....+|+++....-........+.++++|+++..
T Consensus 233 ~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 233 TGGVGADAVLECVGTQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEe
Confidence 12345899987655455678888999999998764
No 400
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.34 E-value=0.73 Score=36.37 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=54.1
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.+.+|-..+|+|+.+|.++-.+.++ +-.|+++|..+ |. .+.. . .+.+.....|....-+.....|
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-ma---~sL~-d-------tg~v~h~r~DGfk~~P~r~~id 272 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-MA---QSLM-D-------TGQVTHLREDGFKFRPTRSNID 272 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc---ceEEEEeccch-hh---hhhh-c-------ccceeeeeccCcccccCCCCCc
Confidence 3568889999999999999999887 55999999544 32 2222 1 2568888888875555456789
Q ss_pred EEEecCCC
Q psy14962 93 AIYLSTYV 100 (216)
Q Consensus 93 ~i~~~~~~ 100 (216)
..+|+.+-
T Consensus 273 WmVCDmVE 280 (358)
T COG2933 273 WMVCDMVE 280 (358)
T ss_pred eEEeehhc
Confidence 99998774
No 401
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=91.24 E-value=1.4 Score=34.96 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCC
Q psy14962 14 IQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQA 89 (216)
Q Consensus 14 ~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 89 (216)
+.++.+|+-.|+ |. |..+..+++.. +..++.++.++ ..+.+++ .+ .. .++....... .....
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~-~~~~~~~----~g-----~~--~~~~~~~~~~~~~~~~~ 207 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASAA-NADFLRS----LG-----AD--EVIDYTKGDFERAAAPG 207 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecch-hHHHHHH----cC-----CC--EEEeCCCCchhhccCCC
Confidence 568899999986 43 77777778775 45888887655 4444422 11 11 1121111000 12234
Q ss_pred CccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.+|+++....-. ......+.++++|.++...
T Consensus 208 ~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 208 GVDAVLDTVGGE-TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred CceEEEECCchH-HHHHHHHHHhcCcEEEEEc
Confidence 589998765544 5577788999999987653
No 402
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=91.21 E-value=3.4 Score=33.69 Aligned_cols=93 Identities=25% Similarity=0.294 Sum_probs=57.4
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC----CCCC
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR----TGLL 86 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~ 86 (216)
.+.++.+||-.|+ |. |..+..+++..+ +++++++.++ ..+.+++ .+ .. .+...+-. ....
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~----~g-----~~--~~~~~~~~~~~~~~~~ 239 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRA----LG-----AD--TVILRDAPLLADAKAL 239 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHh----cC-----Ce--EEEeCCCccHHHHHhh
Confidence 4678999999998 44 778888888864 5788887543 4444432 11 11 11111100 0011
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
....+|+|+....- .......+.|+++|.++..
T Consensus 240 ~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 240 GGEPVDVVADVVGG-PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCCCcEEEecCCH-HHHHHHHHHhccCCEEEEe
Confidence 23468999976553 4567788999999998764
No 403
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=91.20 E-value=4.1 Score=34.06 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=60.7
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeE-EEec-c--------
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH-LRCR-D-------- 80 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~-d-------- 80 (216)
.+.++.+|+-.|+ |+ |..+..+++..+ ..+++++.+++..+.+++.....-.. ....+ +... +
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~~G~~~~i~---~~~~~~~~~~~~~~~~~~~~ 264 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRALGAEGVIN---RRDFDHWGVLPDVNSEAYTA 264 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHcCCCEEEc---ccccccccccccccchhhhh
Confidence 3577899999997 55 778888888864 58888888888887776521100000 00000 0000 0
Q ss_pred -------CC---CCCCCCC-CccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 81 -------GR---TGLLHQA-PFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 81 -------~~---~~~~~~~-~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.. ....... .+|+++....- .......+.++++|+++..
T Consensus 265 ~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 265 WTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred hhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEE
Confidence 00 0001122 58999876543 4567788999999999875
No 404
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=91.15 E-value=3 Score=34.02 Aligned_cols=95 Identities=21% Similarity=0.155 Sum_probs=61.8
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec----cCCC---C
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR----DGRT---G 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~---~ 84 (216)
.+.++.+|+-.|+|. |..+..+++.. +.++++++.+++..+.+++. + .+ .++.. +... .
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~----g-----~~--~~i~~~~~~~~~~~~~~ 228 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELAREL----G-----AV--ATVNASEVEDVAAAVRD 228 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHh----C-----CC--EEEccccchhHHHHHHH
Confidence 356788999999866 77778888876 45899998888877766431 1 11 11111 1100 0
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
...+ .+|+++....-........+.|+++|.++...
T Consensus 229 ~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 229 LTGG-GAHVSVDALGIPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred HhCC-CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeC
Confidence 1112 69999976554456677889999999988653
No 405
>PRK06940 short chain dehydrogenase; Provisional
Probab=91.11 E-value=3.5 Score=32.66 Aligned_cols=75 Identities=20% Similarity=0.135 Sum_probs=49.0
Q ss_pred CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------CCC
Q psy14962 18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------LHQ 88 (216)
Q Consensus 18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~ 88 (216)
+.++-.|+ |.++..+++.+..+.+|+.++.++..++...+.+...+ .++.++..|+.+.. ...
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~i~~~~~~~~~~ 74 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG------FDVSTQEVDVSSRESVKALAATAQTL 74 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHHHhc
Confidence 45666665 46888888777656799999998876665555444322 35777788875321 112
Q ss_pred CCccEEEecCCC
Q psy14962 89 APFDAIYLSTYV 100 (216)
Q Consensus 89 ~~~D~i~~~~~~ 100 (216)
+.+|+++.+...
T Consensus 75 g~id~li~nAG~ 86 (275)
T PRK06940 75 GPVTGLVHTAGV 86 (275)
T ss_pred CCCCEEEECCCc
Confidence 468999887764
No 406
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.04 E-value=0.75 Score=34.09 Aligned_cols=87 Identities=26% Similarity=0.213 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.|.+|.-+|+|. |......++.++ .+|++.|.+....... .. ..+ ...+..... ...|+|
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~----~~--------~~~--~~~~l~ell---~~aDiv 95 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGA----DE--------FGV--EYVSLDELL---AQADIV 95 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHH----HH--------TTE--EESSHHHHH---HH-SEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhc----cc--------ccc--eeeehhhhc---chhhhh
Confidence 578999999988 777777777664 5999999988765411 11 112 222221111 247999
Q ss_pred EecCCCCc-----hHHHHHhcCCCCeEEEEee
Q psy14962 95 YLSTYVPE-----IPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 95 ~~~~~~~~-----~~~~~~~~L~~gG~lv~~~ 121 (216)
+...+... +-+...+.+|+|.+||=..
T Consensus 96 ~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 96 SLHLPLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp EE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred hhhhccccccceeeeeeeeeccccceEEEecc
Confidence 98888632 3377888999998777643
No 407
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=91.03 E-value=1.3 Score=35.99 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=61.3
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP 90 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (216)
.+.++.+|+-.|+ |. |..+..+++..+ .+++.++.+++..+.+++. ...- .+..-...+... . +.
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~v~~-~---~~ 225 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADYV------IVGSKFSEEVKK-I---GG 225 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHHh------cCchhHHHHHHh-c---CC
Confidence 4678899999998 34 888888888864 5899998888887777553 2211 001100001111 1 24
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
+|+++....- .....+.+.|+++|.++..-
T Consensus 226 ~d~~ld~~g~-~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 226 ADIVIETVGT-PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred CcEEEEcCCh-HHHHHHHHHHhcCCEEEEEe
Confidence 7988876543 34577888899999987754
No 408
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.98 E-value=0.67 Score=33.34 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=25.9
Q ss_pred EEcCCCc--hHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH
Q psy14962 22 DIGSGSG--FMSCVFA-ELVGKTGRVFGVEHMREQCEDAWET 60 (216)
Q Consensus 22 diG~G~G--~~~~~l~-~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (216)
|+|+..| .....++ +..++..+|+++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655554 3455677999999999999888888
No 409
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.92 E-value=0.85 Score=38.22 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=47.7
Q ss_pred CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CCCCccE
Q psy14962 18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQAPFDA 93 (216)
Q Consensus 18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~ 93 (216)
.+||-+|||. |......+.+-+ ..+|+..|.+.+....+.... ..+++....|+..... --..+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhc---------cccceeEEecccChHHHHHHHhcCCE
Confidence 4799999966 554444322212 269999999988776665442 2367888888764321 0134699
Q ss_pred EEecCCCCc
Q psy14962 94 IYLSTYVPE 102 (216)
Q Consensus 94 i~~~~~~~~ 102 (216)
|+...+...
T Consensus 72 VIn~~p~~~ 80 (389)
T COG1748 72 VINAAPPFV 80 (389)
T ss_pred EEEeCCchh
Confidence 988777544
No 410
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.77 E-value=1.7 Score=34.35 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhC----CCcEEEEEeCCHHHH
Q psy14962 14 IQEGAKVLDIGSGSGFMSCVFAELVG----KTGRVFGVEHMREQC 54 (216)
Q Consensus 14 ~~~~~~vldiG~G~G~~~~~l~~~~~----~~~~v~~~D~~~~~~ 54 (216)
+.+...++|+|||.|.++.+++.... +...++.+|......
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 46777899999999999999998763 235889999866544
No 411
>KOG3924|consensus
Probab=90.75 E-value=1.2 Score=37.03 Aligned_cols=111 Identities=19% Similarity=0.263 Sum_probs=69.2
Q ss_pred HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH-------HHHhCCCCCCCCCeEE
Q psy14962 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET-------VMRIRPDLLNDGRLHL 76 (216)
Q Consensus 4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~ 76 (216)
+.+++.+. +.+++...|+|+|-|.....++...+ ...-+|+++....-+.|..+ ....| ..+..+..
T Consensus 182 ~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG---k~~~~~~~ 255 (419)
T KOG3924|consen 182 RSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG---KKPNKIET 255 (419)
T ss_pred HHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhC---CCcCceee
Confidence 34555554 78999999999999999988887743 34667777665443333322 22222 12345677
Q ss_pred EeccCCCCCCC---CCCccEEEecCCCCc-----hHHHHHhcCCCCeEEEEe
Q psy14962 77 RCRDGRTGLLH---QAPFDAIYLSTYVPE-----IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 77 ~~~d~~~~~~~---~~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~ 120 (216)
+.+++...-.. ....++|+++...-. -...+..-+++|-+++-.
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecc
Confidence 77776532211 245788888766422 124777888888888764
No 412
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=90.36 E-value=5.2 Score=32.52 Aligned_cols=96 Identities=25% Similarity=0.285 Sum_probs=62.7
Q ss_pred cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCC---CC
Q psy14962 13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGR---TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~ 84 (216)
.+.++.+||-.|+++ |..+..+++..+ .+++.+..+++..+.+.+. + .+. ++.. +.. ..
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~--v~~~~~~~~~~~~~~ 228 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKEL----G-----ADA--FVDFKKSDDVEAVKE 228 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHc----C-----CcE--EEcCCCccHHHHHHH
Confidence 467889999988864 778888888864 4899998888766655321 1 111 1111 110 00
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+|+++.............+.++++|+++...
T Consensus 229 ~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 229 LTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred HhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEec
Confidence 1123468999975555566778889999999998764
No 413
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.26 E-value=1.2 Score=30.33 Aligned_cols=89 Identities=19% Similarity=0.082 Sum_probs=54.1
Q ss_pred eEEEEcCCC-chHHHHHHHHhCCCcEEEE-EeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 19 KVLDIGSGS-GFMSCVFAELVGKTGRVFG-VEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 19 ~vldiG~G~-G~~~~~l~~~~~~~~~v~~-~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
+|.-+|+|. |..-........++.++.+ +|.+++..+.+.+.. .+. ...|.... .....+|+|+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-----------~~~-~~~~~~~l-l~~~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-----------GIP-VYTDLEEL-LADEDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-----------TSE-EESSHHHH-HHHTTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-----------ccc-chhHHHHH-HHhhcCCEEEE
Confidence 577899977 3333322333334567765 599998766553331 233 33333222 12236899999
Q ss_pred cCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 97 STYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 97 ~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
..+...-...+...++.|-.+++.
T Consensus 69 ~tp~~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 69 ATPPSSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp ESSGGGHHHHHHHHHHTTSEEEEE
T ss_pred ecCCcchHHHHHHHHHcCCEEEEE
Confidence 888877777778888888866663
No 414
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=90.09 E-value=0.95 Score=36.68 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=55.7
Q ss_pred CCCeEEEE--cCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------CCC
Q psy14962 16 EGAKVLDI--GSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------GLL 86 (216)
Q Consensus 16 ~~~~vldi--G~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~ 86 (216)
++..++-+ |+|. |..+..+++..+ .++++++.+++..+.+++. + .+ .++..+-.. ...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~~----g-----~~--~~i~~~~~~~~~~v~~~~ 208 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKKI----G-----AE--YVLNSSDPDFLEDLKELI 208 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C-----Cc--EEEECCCccHHHHHHHHh
Confidence 34455443 5555 778888888864 5899999888877777542 1 11 122211110 011
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
....+|+++....-.. .....+.++++|+++..-
T Consensus 209 ~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 209 AKLNATIFFDAVGGGL-TGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCCCCcEEEECCCcHH-HHHHHHhhCCCCEEEEEE
Confidence 2235899987655433 355678899999987754
No 415
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=90.08 E-value=0.68 Score=36.81 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=60.7
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CC
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~ 84 (216)
.+.++.+|+-.|+ |. |..+..+++..+ ..+++++.+++..+.+++. + .. .++..+-. ..
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~ 199 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARAA----G-----AD--HVINYRDEDFVERVRE 199 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHC----C-----CC--EEEeCCchhHHHHHHH
Confidence 3568899999994 43 778888888864 5899998888776665431 1 11 12211110 01
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+|+++....- .......+.++++|.++..-
T Consensus 200 ~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 200 ITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred HcCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEEEe
Confidence 1123458999976554 45677789999999988653
No 416
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=89.89 E-value=4.1 Score=33.86 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=58.7
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEecc--CC---CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRD--GR---TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d--~~---~~ 84 (216)
.++++.+|+-.|+|. |..+..+++.. +. +|+.++.++...+.+++. + .+.+ .....+ .. ..
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~a~~l----G-----a~~~i~~~~~~~~~~~~v~~ 255 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCKAA--GASRIIAVDINKDKFAKAKEL----G-----ATECINPQDYKKPIQEVLTE 255 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CceEecccccchhHHHHHHH
Confidence 467889999888876 67777777775 34 799999888887777442 1 1111 111001 00 00
Q ss_pred CCCCCCccEEEecCCCCchHHH-HHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYS-ILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~-~~~~L~~gG~lv~~~ 121 (216)
.. .+.+|+|+-...-...+.. +...++++|+++..-
T Consensus 256 ~~-~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g 292 (373)
T cd08299 256 MT-DGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVG 292 (373)
T ss_pred Hh-CCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEc
Confidence 11 1358999887665555555 444556788887653
No 417
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.60 E-value=2.6 Score=33.62 Aligned_cols=95 Identities=20% Similarity=0.199 Sum_probs=59.8
Q ss_pred CCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCC
Q psy14962 14 IQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAP 90 (216)
Q Consensus 14 ~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~ 90 (216)
+.++.+||-.|+ |. |..+..+++..+ .+|+++..+++..+.+.+. + .+.+.....+...... ....
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~~~~~~~~~~~~i~~~~~~ 208 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKEL----G-----ADEVVIDDGAIAEQLRAAPGG 208 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----C-----CcEEEecCccHHHHHHHhCCC
Confidence 578899999987 33 888888888864 5899998888766655331 1 1111100111100000 0346
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
+|+++....- .......+.|+++|+++..
T Consensus 209 ~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 209 FDKVLELVGT-ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred ceEEEECCCh-HHHHHHHHHhccCCEEEEE
Confidence 8999876553 4567788999999998764
No 418
>KOG2920|consensus
Probab=89.41 E-value=0.52 Score=37.45 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHH
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQC 54 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~ 54 (216)
..+++|||+|||+|...+...... ...+...|.+...+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence 568999999999999998888773 24788888877765
No 419
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.17 E-value=2.1 Score=34.31 Aligned_cols=48 Identities=29% Similarity=0.245 Sum_probs=41.2
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~ 63 (216)
...+++.|+|.-+|+|..+...... +-..+++|.++..++.+.+++..
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHh
Confidence 3578999999999999998876655 44899999999999999998876
No 420
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=89.17 E-value=1.8 Score=34.47 Aligned_cols=94 Identities=26% Similarity=0.302 Sum_probs=58.9
Q ss_pred cCCCCCeEEEEcC-C-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CC---CC
Q psy14962 13 KIQEGAKVLDIGS-G-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GR---TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~ 84 (216)
.+.++.+|+..|| | .|..+..+++..+ ..+++++.++...+.+.+. + .. .++..+ .. ..
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~i~~ 202 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALARAL----G-----AD--HVIDYRDPDLRERVKA 202 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHc----C-----Cc--eeeecCCccHHHHHHH
Confidence 4567899999998 3 3777777787754 5899998888776666432 1 11 111111 10 00
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
......+|.++....- .....+.+.++++|.++..
T Consensus 203 ~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 203 LTGGRGVDVVYDPVGG-DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred HcCCCCcEEEEECccH-HHHHHHHHhhccCCEEEEE
Confidence 1122458998876554 4456677889999998764
No 421
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=89.11 E-value=7.3 Score=32.33 Aligned_cols=97 Identities=24% Similarity=0.270 Sum_probs=59.6
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLLHQ 88 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~ 88 (216)
.+.+|.+|+-.|+|. |..+..+++..+. ..++++|.++...+.+++. + ...+.....+.. .... .
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~~~----g-----~~~v~~~~~~~~~~i~~~~-~ 241 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAESI----G-----AIPIDFSDGDPVEQILGLE-P 241 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----C-----CeEeccCcccHHHHHHHhh-C
Confidence 356889998888876 7777888877531 2788899888777666542 1 100100000100 0011 1
Q ss_pred CCccEEEecCCCCc-----------hHHHHHhcCCCCeEEEEe
Q psy14962 89 APFDAIYLSTYVPE-----------IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 89 ~~~D~i~~~~~~~~-----------~~~~~~~~L~~gG~lv~~ 120 (216)
+.+|+++....... .+....++|+++|.++..
T Consensus 242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 35899987655432 357788999999998654
No 422
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=89.06 E-value=4.3 Score=33.03 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCCCCCCCccE
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGLLHQAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~ 93 (216)
++.+|+-+|+|. |......+...+ ...|+.++.+++......+.+ + ...... +.... -..+|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~---g--------~~~~~~~~~~~~---l~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKEL---G--------GNAVPLDELLEL---LNEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHc---C--------CeEEeHHHHHHH---HhcCCE
Confidence 688999999977 655444444322 247889999876543322221 1 122221 11111 134799
Q ss_pred EEecCCCCch---HHHHHhcCCCCeEEEEeecCCC
Q psy14962 94 IYLSTYVPEI---PYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 94 i~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
|++..+.+.. ...+.+..+.++.+++....|.
T Consensus 242 Vi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 242 VISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred EEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 9998887665 3333333333577888766554
No 423
>PRK13699 putative methylase; Provisional
Probab=88.84 E-value=0.55 Score=36.37 Aligned_cols=47 Identities=11% Similarity=-0.073 Sum_probs=29.3
Q ss_pred EEEeccCCCC--CCCCCCccEEEecCCCC---------------------chHHHHHhcCCCCeEEEEee
Q psy14962 75 HLRCRDGRTG--LLHQAPFDAIYLSTYVP---------------------EIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 75 ~~~~~d~~~~--~~~~~~~D~i~~~~~~~---------------------~~~~~~~~~L~~gG~lv~~~ 121 (216)
+++++|.... ..+++++|+|+.+.|.. ..+.++.++|||||.+++..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3455554322 23355677777666542 24478889999999988643
No 424
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=88.66 E-value=2.4 Score=34.07 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCccE
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~ 93 (216)
.+++|+-+|+|. |......++.. +.+|+..+.++...+.+. ..+ ..... .+... .-..+|+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~----~~g--------~~~~~~~~l~~---~l~~aDi 212 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARIT----EMG--------LIPFPLNKLEE---KVAEIDI 212 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HCC--------CeeecHHHHHH---HhccCCE
Confidence 478999999977 54444444443 459999998886543332 111 11111 11111 1135899
Q ss_pred EEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 94 IYLSTYVPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
|+...+..-+.....+.++++..++=....|
T Consensus 213 Vint~P~~ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 213 VINTIPALVLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred EEECCChHHhCHHHHhcCCCCeEEEEeCcCC
Confidence 9998776544466777888876554443434
No 425
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=88.53 E-value=6.1 Score=31.78 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=59.5
Q ss_pred cCCCCCeEEEEcC-C-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--c-CCC---C
Q psy14962 13 KIQEGAKVLDIGS-G-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--D-GRT---G 84 (216)
Q Consensus 13 ~~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d-~~~---~ 84 (216)
.+.++.+|+-.|+ | .|..+..+++..+ ..++.++.+++..+.+.+. + . ...+... + ... .
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~-~~~~~~~~~~~~~~~~~~ 204 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKKL----A-----A-IILIRYPDEEGFAPKVKK 204 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C-----C-cEEEecCChhHHHHHHHH
Confidence 4678899998884 3 3888888888864 4777788888777766431 1 1 1111111 1 100 0
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
......+|+++.... ......+.+.|+++|.++..
T Consensus 205 ~~~~~~~d~~i~~~~-~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 205 LTGEKGVNLVLDCVG-GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred HhCCCCceEEEECCc-hHHHHHHHHHhccCCeEEEE
Confidence 112345899987654 34667788899999998864
No 426
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.26 E-value=5.7 Score=30.08 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCC
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHM 50 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~ 50 (216)
...+|+-+|||. |......+...|. .+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 367999999986 6554444434332 388888876
No 427
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=88.21 E-value=5.8 Score=31.90 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=58.5
Q ss_pred CCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC----CCCCCCCC
Q psy14962 16 EGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG----RTGLLHQA 89 (216)
Q Consensus 16 ~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~ 89 (216)
.+.+||-.|+ |. |..+..+++..+ .+++.++.+++..+.+++. + ...+ +...+. .... ...
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~v-~~~~~~~~~~~~~~-~~~ 212 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKKL----G-----AKEV-IPREELQEESIKPL-EKQ 212 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHc----C-----CCEE-EcchhHHHHHHHhh-ccC
Confidence 4679999987 54 778888888864 4899998888876666432 1 1111 100110 0011 134
Q ss_pred CccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.+|+|+....- .......+.++++|+++..-
T Consensus 213 ~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 213 RWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred CcCEEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 58998865544 45677889999999998764
No 428
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=88.21 E-value=6.6 Score=31.50 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=58.3
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CC
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~ 84 (216)
.+.+|.+||-.|+ |. |..+..+++..+ ..++.+.-+++..+.+++. + .+ .++...-. ..
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~i~~ 202 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRAL----G-----IG--PVVSTEQPGWQDKVRE 202 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHhc----C-----CC--EEEcCCCchHHHHHHH
Confidence 4678899998876 43 888888888864 4777776666655544431 1 11 12211100 01
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
......+|+|+....-. ......+.|+++|+++..
T Consensus 203 ~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 203 AAGGAPISVALDSVGGK-LAGELLSLLGEGGTLVSF 237 (324)
T ss_pred HhCCCCCcEEEECCCCh-hHHHHHHhhcCCcEEEEE
Confidence 11234689999765543 457778999999998765
No 429
>PRK08324 short chain dehydrogenase; Validated
Probab=88.11 E-value=3.4 Score=37.48 Aligned_cols=76 Identities=16% Similarity=0.031 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-----C---
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-----L--- 86 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 86 (216)
+|++||-.|++ |.++..+++.+ ..+.+|+.+|.++..++.+.+.+.. ..++.++..|+.... .
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHH
Confidence 46788888763 34444444332 1256899999998776655544322 135777888865321 0
Q ss_pred --CCCCccEEEecCC
Q psy14962 87 --HQAPFDAIYLSTY 99 (216)
Q Consensus 87 --~~~~~D~i~~~~~ 99 (216)
..+.+|+|+.+.+
T Consensus 493 ~~~~g~iDvvI~~AG 507 (681)
T PRK08324 493 ALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHcCCCCEEEECCC
Confidence 1246899988776
No 430
>KOG2539|consensus
Probab=87.87 E-value=2.8 Score=35.82 Aligned_cols=104 Identities=14% Similarity=0.036 Sum_probs=61.5
Q ss_pred CCeEEEEcCCCchHH--HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--hCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 17 GAKVLDIGSGSGFMS--CVFAELVGKTGRVFGVEHMREQCEDAWETVMR--IRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 17 ~~~vldiG~G~G~~~--~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.+.+.|+|.|.|.-. ....... ..-.++.+|.+.+|.......+.. ...++.. .++ +-.+..........||
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v-~~~--~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIV-RKL--VFHRQRLPIDIKNGYD 276 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhc-ccc--chhcccCCCCccccee
Confidence 456788888765433 3333331 123688899999999988887654 2111000 011 1111111222345699
Q ss_pred EEEecCCCCchH----------HHHHhcCCCCeEEEEeecCC
Q psy14962 93 AIYLSTYVPEIP----------YSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 93 ~i~~~~~~~~~~----------~~~~~~L~~gG~lv~~~~~~ 124 (216)
+|++...+.... ...++..++|+++++.....
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999988875532 45557888999998877554
No 431
>PRK08618 ornithine cyclodeaminase; Validated
Probab=87.66 E-value=8.1 Score=31.62 Aligned_cols=93 Identities=15% Similarity=0.060 Sum_probs=53.2
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCcc
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D 92 (216)
....+|+-+|||. |...........+-.+|..++.+++..+...+.+... ..+.+.. .|.... . ...|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~-~--~~aD 194 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-------FNTEIYVVNSADEA-I--EEAD 194 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-------cCCcEEEeCCHHHH-H--hcCC
Confidence 3457899999997 5544433222222347888899988776655555431 1222222 222111 1 3479
Q ss_pred EEEecCCCCchHHHHHhcCCCCeEEEE
Q psy14962 93 AIYLSTYVPEIPYSILLQLKPGGRLVC 119 (216)
Q Consensus 93 ~i~~~~~~~~~~~~~~~~L~~gG~lv~ 119 (216)
+|++.-+..+-+-. ..|+||-.+..
T Consensus 195 iVi~aT~s~~p~i~--~~l~~G~hV~~ 219 (325)
T PRK08618 195 IIVTVTNAKTPVFS--EKLKKGVHINA 219 (325)
T ss_pred EEEEccCCCCcchH--HhcCCCcEEEe
Confidence 99987776553223 78888766543
No 432
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=87.59 E-value=1.8 Score=34.87 Aligned_cols=93 Identities=23% Similarity=0.220 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CC---CCC
Q psy14962 14 IQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GR---TGL 85 (216)
Q Consensus 14 ~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~ 85 (216)
+.++.+||-.|+ |. |..+..+++..+ .++++++.++...+.+++.+. .. .++..+ .. ...
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~g--------~~--~~~~~~~~~~~~~v~~~ 210 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEELG--------FD--AAINYKTPDLAEALKEA 210 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhcC--------Cc--eEEecCChhHHHHHHHh
Confidence 567889998884 43 778888888854 589999888877666654221 11 111111 10 001
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
. .+.+|+++....- .......+.++++|+++..
T Consensus 211 ~-~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 211 A-PDGIDVYFDNVGG-EILDAALTLLNKGGRIALC 243 (329)
T ss_pred c-cCCceEEEEcchH-HHHHHHHHhcCCCceEEEE
Confidence 1 2468999865443 4567778899999998754
No 433
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=87.50 E-value=7.5 Score=31.24 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=60.0
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC-C------CC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG-R------TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~------~~ 84 (216)
.+.++.+|+-.|+|. |..+..+++.. +.+++.++.+++..+.+.+. + ... ++..+. . ..
T Consensus 157 ~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~----g-----~~~--~~~~~~~~~~~~~~~~ 223 (336)
T cd08276 157 PLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKAL----G-----ADH--VINYRTTPDWGEEVLK 223 (336)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C-----CCE--EEcCCcccCHHHHHHH
Confidence 457888888777655 66667777775 45899999888877766542 1 111 111111 0 01
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+|+++.... ........+.|+++|.++...
T Consensus 224 ~~~~~~~d~~i~~~~-~~~~~~~~~~l~~~G~~v~~g 259 (336)
T cd08276 224 LTGGRGVDHVVEVGG-PGTLAQSIKAVAPGGVISLIG 259 (336)
T ss_pred HcCCCCCcEEEECCC-hHHHHHHHHhhcCCCEEEEEc
Confidence 112346899987654 445677889999999988653
No 434
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=87.47 E-value=1.8 Score=35.37 Aligned_cols=91 Identities=21% Similarity=0.172 Sum_probs=53.7
Q ss_pred CCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CCCCCCCCCC
Q psy14962 16 EGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GRTGLLHQAP 90 (216)
Q Consensus 16 ~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 90 (216)
+|.+|+-.|. |. |..+..+++..+ ..++++..+ ...+.++ ..+ .. .++... ........+.
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~----~~g-----~~--~~~~~~~~~~~~~l~~~~~ 227 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVK----SLG-----AD--DVIDYNNEDFEEELTERGK 227 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHH----HhC-----Cc--eEEECCChhHHHHHHhcCC
Confidence 4899998884 44 777777888764 477777643 3222222 211 11 111111 1111111245
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
+|+++....-. ......+.++++|+++..-
T Consensus 228 vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 228 FDVILDTVGGD-TEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred CCEEEECCChH-HHHHHHHHhccCCEEEEec
Confidence 89999766544 6678889999999998753
No 435
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=87.46 E-value=1.8 Score=34.80 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=57.1
Q ss_pred CCCCC-eEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCC--CCCC
Q psy14962 14 IQEGA-KVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRT--GLLH 87 (216)
Q Consensus 14 ~~~~~-~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~--~~~~ 87 (216)
+.++. +|+-.|+ |. |..+..+++..+ ..++.++.+++..+.+++. + ... ++.. +... ....
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~~----g-----~~~--~~~~~~~~~~~~~~~ 208 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKEL----G-----ASE--VIDREDLSPPGKPLE 208 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHhc----C-----CcE--EEccccHHHHHHHhc
Confidence 56788 9999997 55 778888888864 4788777666655555321 1 111 1111 1000 0011
Q ss_pred CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.+.+|+++-...-. ....+.+.|+++|+++..
T Consensus 209 ~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~ 240 (323)
T TIGR02823 209 KERWAGAVDTVGGH-TLANVLAQLKYGGAVAAC 240 (323)
T ss_pred CCCceEEEECccHH-HHHHHHHHhCCCCEEEEE
Confidence 22489887765533 457788899999999775
No 436
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=87.41 E-value=7.8 Score=32.50 Aligned_cols=96 Identities=20% Similarity=0.171 Sum_probs=60.4
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--------
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-------- 82 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-------- 82 (216)
.+.++.+|+-.|+ |. |..+..+++.. +.+++.++.++...+.+++. + .. .++.-+..
T Consensus 186 ~~~~g~~vlV~Ga~g~vG~~ai~~ak~~--G~~vi~~~~~~~~~~~~~~~----g-----~~--~~v~~~~~~~~~~~~~ 252 (398)
T TIGR01751 186 TVKPGDNVLIWGAAGGLGSYATQLARAG--GGNPVAVVSSPEKAEYCREL----G-----AE--AVIDRNDFGHWGRLPD 252 (398)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHc----C-----CC--EEecCCCcchhhcccc
Confidence 3578899999998 44 77878888876 45788888787766666542 1 01 11110000
Q ss_pred --------------------CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962 83 --------------------TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 83 --------------------~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 122 (216)
........+|+++....- ..+....+.|+++|.++..-.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~ 311 (398)
T TIGR01751 253 LNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFVCRRGGMVVICGG 311 (398)
T ss_pred ccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHhhccCCEEEEEcc
Confidence 000112458999887653 456778889999999887643
No 437
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.29 E-value=3.4 Score=31.07 Aligned_cols=85 Identities=18% Similarity=0.047 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcCC-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 14 IQEGAKVLDIGSG-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 14 ~~~~~~vldiG~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
...+..||-+|.= +|.++..++.. ..+|+.+|+.|.+.... +++++|...- . ...+.+|
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~---~~~vtv~Di~p~~r~~l-------------p~~v~Fr~~~--~--~~~G~~D 101 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK---ADKVTVVDIHPFMRGFL-------------PNNVKFRNLL--K--FIRGEVD 101 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc---cceEEEecCCHHHHhcC-------------CCCccHhhhc--C--CCCCcee
Confidence 3567899999984 47777666654 45999999999875433 3566666542 1 1246689
Q ss_pred EEEecCCCCchHHHHHhcCCCCeEEE
Q psy14962 93 AIYLSTYVPEIPYSILLQLKPGGRLV 118 (216)
Q Consensus 93 ~i~~~~~~~~~~~~~~~~L~~gG~lv 118 (216)
+|+---++...-.+..+-+.|+-.++
T Consensus 102 livDlTGlGG~~Pe~L~~fnp~vfiV 127 (254)
T COG4017 102 LIVDLTGLGGIEPEFLAKFNPKVFIV 127 (254)
T ss_pred EEEeccccCCCCHHHHhccCCceEEE
Confidence 99987777666666666677765444
No 438
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=87.09 E-value=11 Score=30.46 Aligned_cols=93 Identities=22% Similarity=0.184 Sum_probs=59.8
Q ss_pred CCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--cCCC--CCCCCCC
Q psy14962 17 GAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--DGRT--GLLHQAP 90 (216)
Q Consensus 17 ~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~~--~~~~~~~ 90 (216)
+.+|+-.|+ |. |..+..+++..+. .++++++.+++..+.+++. + .. .++.. +... .....+.
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~i~~~~~~~ 217 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKEL----G-----AD--HVINHHQDLAEQLEALGIEP 217 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHhc----C-----Cc--EEEeCCccHHHHHHhhCCCC
Confidence 889999885 33 7788888888641 5899998888777666431 1 11 11111 1100 0111246
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
+|+++....-......+.+.++++|.++...
T Consensus 218 ~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 218 VDYIFCLTDTDQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred CCEEEEccCcHHHHHHHHHHhcCCCEEEEec
Confidence 8999876555567788899999999998753
No 439
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=87.08 E-value=10 Score=30.28 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=61.2
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCC-----CC
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGR-----TG 84 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~-----~~ 84 (216)
.++++.+|+-.|+ |. |..+..+++..+ .++++++.+++..+.+++. + .. .++.. +.. ..
T Consensus 139 ~~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~ 205 (324)
T cd08244 139 TLTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRAL----G-----AD--VAVDYTRPDWPDQVRE 205 (324)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----C-----CC--EEEecCCccHHHHHHH
Confidence 4578889999885 33 778888888864 5899999888877666431 1 11 11111 100 00
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 122 (216)
......+|+++....-.. .....+.|+++|+++....
T Consensus 206 ~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~ 242 (324)
T cd08244 206 ALGGGGVTVVLDGVGGAI-GRAALALLAPGGRFLTYGW 242 (324)
T ss_pred HcCCCCceEEEECCChHh-HHHHHHHhccCcEEEEEec
Confidence 112245899997655443 4778899999999887543
No 440
>KOG2912|consensus
Probab=86.88 E-value=1.9 Score=35.00 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=48.3
Q ss_pred EEEcCCCchHHHHH-HHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------CCCCCcc
Q psy14962 21 LDIGSGSGFMSCVF-AELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------LHQAPFD 92 (216)
Q Consensus 21 ldiG~G~G~~~~~l-~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D 92 (216)
+|||.|+-.+-..+ ++. .+...+++|++......|++++.+++++ ..+.++........ .++..||
T Consensus 107 iDIgtgasci~~llg~rq--~n~~f~~teidd~s~~~a~snV~qn~ls----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ--NNWYFLATEIDDMSFNYAKSNVEQNNLS----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeccCchhhhHHhhhchh--ccceeeeeeccccccchhhccccccccc----cceeeEEecchhhcchhhhccCccceee
Confidence 57776664332222 222 2468899999999999999999988764 55666555332111 1134599
Q ss_pred EEEecCCC
Q psy14962 93 AIYLSTYV 100 (216)
Q Consensus 93 ~i~~~~~~ 100 (216)
.+.|+.++
T Consensus 181 FcMcNPPF 188 (419)
T KOG2912|consen 181 FCMCNPPF 188 (419)
T ss_pred EEecCCch
Confidence 99998886
No 441
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.73 E-value=12 Score=28.65 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMR-EQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL------- 86 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------- 86 (216)
.+.++|-.|+. |.++..+++.+ ..+.+|++++.+. ...+.....+... ..++.++.+|......
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA------GGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence 45788888864 44555555443 2356888877653 2333333333321 1456777888753210
Q ss_pred ---CCCCccEEEecCCCC-------------------chHHHHHhcCCCCeEEEEe
Q psy14962 87 ---HQAPFDAIYLSTYVP-------------------EIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 87 ---~~~~~D~i~~~~~~~-------------------~~~~~~~~~L~~gG~lv~~ 120 (216)
..+.+|+++.+.... .+.+.+.+.++.+|.+++.
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 013578887655321 1235555565666666654
No 442
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=86.70 E-value=4.2 Score=32.57 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=48.3
Q ss_pred CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
.+|+-+|.|- |..-....+.-+....+++.|.+...++.+.+. .+.....+.. ........|+|+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l------------gv~d~~~~~~-~~~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL------------GVIDELTVAG-LAEAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc------------Ccccccccch-hhhhcccCCEEEE
Confidence 5788888777 443333333334445678899888877766542 1111111100 0112344799999
Q ss_pred cCCCCchH---HHHHhcCCCCeEE
Q psy14962 97 STYVPEIP---YSILLQLKPGGRL 117 (216)
Q Consensus 97 ~~~~~~~~---~~~~~~L~~gG~l 117 (216)
.-|+.... +++...|++|..+
T Consensus 71 avPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 71 AVPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred eccHHHHHHHHHHhcccCCCCCEE
Confidence 98886643 4444555666554
No 443
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.63 E-value=4.6 Score=32.65 Aligned_cols=89 Identities=21% Similarity=0.161 Sum_probs=48.6
Q ss_pred CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
..+|.-+|+|. |......+...+....|+++|.+++..+.+++. + . ......+.... -...|+|+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g------~-~~~~~~~~~~~---~~~aDvVi 71 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----G------L-GDRVTTSAAEA---VKGADLVI 71 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----C------C-CceecCCHHHH---hcCCCEEE
Confidence 35789999877 433222222222223799999999876655431 1 0 11111111111 13479999
Q ss_pred ecCCCCc---hHHHHHhcCCCCeEEEE
Q psy14962 96 LSTYVPE---IPYSILLQLKPGGRLVC 119 (216)
Q Consensus 96 ~~~~~~~---~~~~~~~~L~~gG~lv~ 119 (216)
...+... +...+...++++..++.
T Consensus 72 iavp~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 8877643 34556667788875543
No 444
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.50 E-value=4.8 Score=32.08 Aligned_cols=95 Identities=26% Similarity=0.299 Sum_probs=53.1
Q ss_pred CCCCCeEEEEcC-C-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCCCCC
Q psy14962 14 IQEGAKVLDIGS-G-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGLLHQ 88 (216)
Q Consensus 14 ~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~ 88 (216)
+.++.+|+..|+ | .|..+..+++..+ .++++++.+ ...+.+++ .+ .. .++.. +........
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g--~~v~~~~~~-~~~~~~~~----~g-----~~--~~~~~~~~~~~~~~~~~ 206 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALG--AHVTGVCST-RNAELVRS----LG-----AD--EVIDYTTEDFVALTAGG 206 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCH-HHHHHHHH----cC-----CC--EeecCCCCCcchhccCC
Confidence 678899999997 3 3778888888764 488888743 44444422 11 11 11111 110111223
Q ss_pred CCccEEEecCCCC-chHHHHHhcCCCCeEEEEeec
Q psy14962 89 APFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 89 ~~~D~i~~~~~~~-~~~~~~~~~L~~gG~lv~~~~ 122 (216)
..+|+++....-. .........++++|.++....
T Consensus 207 ~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~ 241 (319)
T cd08267 207 EKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGG 241 (319)
T ss_pred CCCcEEEECCCchHHHHHHhhhccCCCCEEEEecc
Confidence 4689999765421 111222223999999987543
No 445
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.50 E-value=6.9 Score=35.18 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=61.3
Q ss_pred CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--C--CCCCcc
Q psy14962 18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--L--HQAPFD 92 (216)
Q Consensus 18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~--~~~~~D 92 (216)
.+|+-+|+|. |.......+.. +..++.+|.|++.++.+++ ....++.+|..+.. . .-+..|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRK------------FGMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHh------------cCCeEEEEeCCCHHHHHhcCCCcCC
Confidence 5799999988 66555544442 4589999999998887754 23578999986432 1 124678
Q ss_pred EEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962 93 AIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
.+++...-.. ......+.+.|+-.++....+..
T Consensus 467 ~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~ 502 (621)
T PRK03562 467 VLINAIDDPQTSLQLVELVKEHFPHLQIIARARDVD 502 (621)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence 8877655433 22334455677777777665553
No 446
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=86.44 E-value=4 Score=31.75 Aligned_cols=99 Identities=22% Similarity=0.168 Sum_probs=59.0
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCC-eEEEeccCCC---CCC
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR-LHLRCRDGRT---GLL 86 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~---~~~ 86 (216)
.+.++.+|+-.|+ |. |..+..+++.. +.++++++.++...+.+++. +.. ... +.....+... ...
T Consensus 101 ~~~~g~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~ 171 (288)
T smart00829 101 RLRPGESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAGSPEKRDFLREL----GIP---DDHIFSSRDLSFADEILRAT 171 (288)
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----CCC---hhheeeCCCccHHHHHHHHh
Confidence 3578899998873 43 77777788775 45899999888877766432 100 000 0100011100 111
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
....+|+++.... ........+.++++|.++...
T Consensus 172 ~~~~~d~vi~~~~-~~~~~~~~~~l~~~g~~v~~g 205 (288)
T smart00829 172 GGRGVDVVLNSLA-GEFLDASLRCLAPGGRFVEIG 205 (288)
T ss_pred CCCCcEEEEeCCC-HHHHHHHHHhccCCcEEEEEc
Confidence 2235898886544 345567789999999988654
No 447
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.30 E-value=9 Score=30.38 Aligned_cols=89 Identities=26% Similarity=0.262 Sum_probs=58.3
Q ss_pred CCCeEEEEcCC--CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 16 EGAKVLDIGSG--SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G--~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
++.+|+-.|+. .|..+..+++..+ .++++++.+++..+.+++ + + .... +...+ .. ..+.+|+
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g-----~~~~-~~~~~---~~-~~~~~d~ 195 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAG--AHVVAVVGSPARAEGLRE-L---G-----AAEV-VVGGS---EL-SGAPVDL 195 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---C-----CcEE-Eeccc---cc-cCCCceE
Confidence 58899998883 3777788888764 589999888877766654 1 1 1111 11111 11 1235899
Q ss_pred EEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 94 IYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
++....- .......+.|+++|+++..-
T Consensus 196 vl~~~g~-~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 196 VVDSVGG-PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred EEECCCc-HHHHHHHHHhcCCCEEEEEe
Confidence 9876543 35677889999999988653
No 448
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=86.07 E-value=3.7 Score=25.87 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCchH-HHHHHHHhCCCcEEEEEeCC
Q psy14962 17 GAKVLDIGSGSGFM-SCVFAELVGKTGRVFGVEHM 50 (216)
Q Consensus 17 ~~~vldiG~G~G~~-~~~l~~~~~~~~~v~~~D~~ 50 (216)
.++||-+||.+|+- +..++..++.++..+++-..
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 47999999999873 44555556667788887543
No 449
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=86.04 E-value=2.5 Score=34.01 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=55.4
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEe--CCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCC
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVE--HMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLL 86 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~ 86 (216)
.+.++.+||-.|+|. |..+..+++..+ .+|+.+. .+++....+++. +. ..+.....+.. ....
T Consensus 161 ~~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~~----g~-----~~~~~~~~~~~~~l~~~~ 229 (306)
T cd08258 161 GIRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKEL----GA-----DAVNGGEEDLAELVNEIT 229 (306)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHh----CC-----cccCCCcCCHHHHHHHHc
Confidence 356788888777654 677777788764 4776663 333333333321 11 11101111110 0011
Q ss_pred CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
....+|+++.............+.|+++|.++..
T Consensus 230 ~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 230 DGDGADVVIECSGAVPALEQALELLRKGGRIVQV 263 (306)
T ss_pred CCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 2345899987765555677888999999998864
No 450
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.99 E-value=3.3 Score=35.93 Aligned_cols=74 Identities=14% Similarity=0.035 Sum_probs=45.0
Q ss_pred cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962 13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF 91 (216)
Q Consensus 13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 91 (216)
.+.++.+|+-+|.|. |..+..+++.. +..|++.|..+..++. +.+. .+.+...+-.... -..+
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~----l~~~--------g~~~~~~~~~~~~--l~~~ 71 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRP----HAER--------GVATVSTSDAVQQ--IADY 71 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHH----HHhC--------CCEEEcCcchHhH--hhcC
Confidence 355788999999987 66666666553 4699999977654332 2221 2444433211111 1347
Q ss_pred cEEEecCCCCc
Q psy14962 92 DAIYLSTYVPE 102 (216)
Q Consensus 92 D~i~~~~~~~~ 102 (216)
|+|+.+.+++.
T Consensus 72 D~VV~SpGi~~ 82 (488)
T PRK03369 72 ALVVTSPGFRP 82 (488)
T ss_pred CEEEECCCCCC
Confidence 99999888753
No 451
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.91 E-value=5.1 Score=35.42 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=55.9
Q ss_pred CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCCCcc
Q psy14962 18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQAPFD 92 (216)
Q Consensus 18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D 92 (216)
.+++-+|||. |.......+. .+..++.+|.+++.++.+++ .....+.+|..+.. ..-+.+|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~~~~L~~a~i~~a~ 483 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRE------------RGIRAVLGNAANEEIMQLAHLDCAR 483 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCCHHHHHhcCccccC
Confidence 5677788777 5544333333 24589999999998877753 24678999986432 1124688
Q ss_pred EEEecCCCC--c-hHHHHHhcCCCCeEEEEeecCC
Q psy14962 93 AIYLSTYVP--E-IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 93 ~i~~~~~~~--~-~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.+++...-. . ..-...+...|+..++..+.++
T Consensus 484 ~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 484 WLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYD 518 (558)
T ss_pred EEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 776543322 1 1222334556777777765444
No 452
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.89 E-value=4.4 Score=36.20 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=61.0
Q ss_pred CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCcc
Q psy14962 18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPFD 92 (216)
Q Consensus 18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D 92 (216)
.+|+-+|+|. |......... .+..++.+|.+++.++.+++ ....++.+|..+... .-+..|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRK------------YGYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh------------CCCeEEEeeCCCHHHHHhcCCccCC
Confidence 4677777776 5544333333 24589999999998887754 235688999864321 124678
Q ss_pred EEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962 93 AIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSKS 126 (216)
Q Consensus 93 ~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~~ 126 (216)
.+++...-.. ......+.+.|...++....++..
T Consensus 467 ~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 467 AIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 8877655543 223445667888888887776643
No 453
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=85.85 E-value=4.8 Score=31.29 Aligned_cols=97 Identities=22% Similarity=0.115 Sum_probs=59.0
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCC---C
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRT---G 84 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~ 84 (216)
.+.+|.+|+-.|+ |. |..+..+++..+ ..+++++.++.....+.+.... -..++.. +... .
T Consensus 105 ~~~~g~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 173 (293)
T cd05195 105 RLQKGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATVGSEEKREFLRELGGP---------VDHIFSSRDLSFADGILR 173 (293)
T ss_pred ccCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhCCC---------cceEeecCchhHHHHHHH
Confidence 4678999998864 33 777777888764 5888888777766665443100 0011111 1100 0
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+|+++....-. ......+.++++|.++...
T Consensus 174 ~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g 209 (293)
T cd05195 174 ATGGRGVDVVLNSLSGE-LLRASWRCLAPFGRFVEIG 209 (293)
T ss_pred HhCCCCceEEEeCCCch-HHHHHHHhcccCceEEEee
Confidence 11234589998655544 6678889999999987643
No 454
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=85.84 E-value=10 Score=31.22 Aligned_cols=86 Identities=12% Similarity=-0.035 Sum_probs=39.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHh---------------CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe--EEEec
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELV---------------GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL--HLRCR 79 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~---------------~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ 79 (216)
.-+|+|+||.+|.-+..+...+ .|..+|+-.|.-..--...-+.+...........++ .-+.+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 3479999999998876665321 112477888865542211111111100000001233 22345
Q ss_pred cCCCCCCCCCCccEEEecCCCCc
Q psy14962 80 DGRTGLLHQAPFDAIYLSTYVPE 102 (216)
Q Consensus 80 d~~~~~~~~~~~D~i~~~~~~~~ 102 (216)
.+.....+.++.|++++...++|
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHW 119 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHW 119 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB
T ss_pred hhhhccCCCCceEEEEEechhhh
Confidence 55566667889999998888765
No 455
>PRK06141 ornithine cyclodeaminase; Validated
Probab=85.28 E-value=9.3 Score=31.12 Aligned_cols=94 Identities=17% Similarity=0.084 Sum_probs=52.6
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
....+|+-+|||. |...........+..+|+..+.+++..+...+.+...+ .++.. ..+.... -...|+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g------~~~~~-~~~~~~a---v~~aDI 192 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG------FDAEV-VTDLEAA---VRQADI 192 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC------CceEE-eCCHHHH---HhcCCE
Confidence 4567899999988 55554333332334589999999887666555554321 12222 1221111 135899
Q ss_pred EEecCCCCc-hHHHHHhcCCCCeEEEEe
Q psy14962 94 IYLSTYVPE-IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 94 i~~~~~~~~-~~~~~~~~L~~gG~lv~~ 120 (216)
|++..+... ++. ...++||..+...
T Consensus 193 Vi~aT~s~~pvl~--~~~l~~g~~i~~i 218 (314)
T PRK06141 193 ISCATLSTEPLVR--GEWLKPGTHLDLV 218 (314)
T ss_pred EEEeeCCCCCEec--HHHcCCCCEEEee
Confidence 977655432 111 2578898854443
No 456
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.21 E-value=7.1 Score=29.98 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------- 86 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 86 (216)
++.++|-.|+ +|.++..+++.+. .+..|+.++.++..++.+.+.+...+ .++.++..|......
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG------TEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence 4678888886 3444444444331 24589999998876665555544322 457777888643210
Q ss_pred --CCCCccEEEecCC
Q psy14962 87 --HQAPFDAIYLSTY 99 (216)
Q Consensus 87 --~~~~~D~i~~~~~ 99 (216)
..+.+|+|+....
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 0145799887654
No 457
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=85.08 E-value=2.4 Score=27.96 Aligned_cols=73 Identities=8% Similarity=-0.040 Sum_probs=44.5
Q ss_pred EcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc
Q psy14962 23 IGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE 102 (216)
Q Consensus 23 iG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 102 (216)
+.||+|..+..+++. .++.+.+.+ -.+++...+..........+|+|++..-+..
T Consensus 4 ~~Cg~G~sTS~~~~k-------------------i~~~~~~~~------~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~ 58 (96)
T cd05564 4 LVCSAGMSTSILVKK-------------------MKKAAEKRG------IDAEIEAVPESELEEYIDDADVVLLGPQVRY 58 (96)
T ss_pred EEcCCCchHHHHHHH-------------------HHHHHHHCC------CceEEEEecHHHHHHhcCCCCEEEEChhHHH
Confidence 568888776665554 234444433 2355666554322222346899999999888
Q ss_pred hHHHHHhcCCCCeEEEEe
Q psy14962 103 IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 103 ~~~~~~~~L~~gG~lv~~ 120 (216)
..+.+.+...+.+.=+..
T Consensus 59 ~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 59 MLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred HHHHHHHHhccCCCcEEE
Confidence 888888766555544333
No 458
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=85.05 E-value=7.3 Score=31.23 Aligned_cols=92 Identities=20% Similarity=0.162 Sum_probs=56.9
Q ss_pred CCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCCCCCCc
Q psy14962 17 GAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLLHQAPF 91 (216)
Q Consensus 17 ~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~ 91 (216)
+.+|+-.|+ |. |..+..+++..+ .+|+.++.+++..+.+++. + .+.+ +...+.. ......+.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~~-~~~~~~~~~~~~~~~~~~~ 214 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLG--YTVVALTGKEEQADYLKSL----G-----ASEV-LDREDLLDESKKPLLKARW 214 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----C-----CcEE-EcchhHHHHHHHHhcCCCc
Confidence 468888886 44 778888888864 4799999888777666432 1 1111 1111100 000112358
Q ss_pred cEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 92 DAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
|+|+....- .......+.++++|+++..-
T Consensus 215 d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g 243 (325)
T cd05280 215 AGAIDTVGG-DVLANLLKQTKYGGVVASCG 243 (325)
T ss_pred cEEEECCch-HHHHHHHHhhcCCCEEEEEe
Confidence 988865443 45678889999999988654
No 459
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.03 E-value=11 Score=30.39 Aligned_cols=96 Identities=25% Similarity=0.346 Sum_probs=56.6
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP 90 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (216)
.+.++.+|+-.|+ |. |..+..+++..+ ..|++++. +...+.+++ .+ ...+.....+........+.
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~v~~~~~-~~~~~~~~~----~g-----~~~~~~~~~~~~~~~~~~~~ 203 (331)
T cd08273 136 KVLTGQRVLIHGASGGVGQALLELALLAG--AEVYGTAS-ERNHAALRE----LG-----ATPIDYRTKDWLPAMLTPGG 203 (331)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeC-HHHHHHHHH----cC-----CeEEcCCCcchhhhhccCCC
Confidence 3678899999986 33 777777888754 58888875 655554432 11 01010000011100111245
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
+|+++....-.. .....+.++++|.++..-
T Consensus 204 ~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g 233 (331)
T cd08273 204 VDVVFDGVGGES-YEESYAALAPGGTLVCYG 233 (331)
T ss_pred ceEEEECCchHH-HHHHHHHhcCCCEEEEEc
Confidence 899987655444 567788999999987653
No 460
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=84.85 E-value=12 Score=30.13 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=59.2
Q ss_pred cCCCCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------C
Q psy14962 13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------G 84 (216)
Q Consensus 13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~ 84 (216)
.+.++.+|+-.| +|. |..+..+++..+ .++++++.++...+.+++. + .. .++..+-.. .
T Consensus 137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~G--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~ 203 (327)
T PRK10754 137 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGSAQKAQRAKKA----G-----AW--QVINYREENIVERVKE 203 (327)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHC----C-----CC--EEEcCCCCcHHHHHHH
Confidence 467889998875 344 788888888864 5899999888876666331 1 11 122111110 1
Q ss_pred CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
......+|+++....- .......+.++++|+++..-
T Consensus 204 ~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 204 ITGGKKVRVVYDSVGK-DTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred HcCCCCeEEEEECCcH-HHHHHHHHHhccCCEEEEEc
Confidence 1123458988865432 34566788999999998754
No 461
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=84.65 E-value=12 Score=30.10 Aligned_cols=94 Identities=22% Similarity=0.191 Sum_probs=59.1
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CC--
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GL-- 85 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~-- 85 (216)
.+.++.+|+-.|+ |. |..+..+++..+ .+++.++.+++..+.+++. + .+ .++..+-.. ..
T Consensus 136 ~~~~~~~vlI~ga~g~ig~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~v~~~~~~~~~~~~~~ 202 (329)
T cd08250 136 EMKSGETVLVTAAAGGTGQFAVQLAKLAG--CHVIGTCSSDEKAEFLKSL----G-----CD--RPINYKTEDLGEVLKK 202 (329)
T ss_pred CCCCCCEEEEEeCccHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHHc----C-----Cc--eEEeCCCccHHHHHHH
Confidence 4678999998884 33 788888888864 5899988887776665431 1 11 111111100 00
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
..+..+|+++.... ......+.+.++++|.++..
T Consensus 203 ~~~~~vd~v~~~~g-~~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 203 EYPKGVDVVYESVG-GEMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred hcCCCCeEEEECCc-HHHHHHHHHHhccCCeEEEE
Confidence 01235899987654 35667788899999998754
No 462
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.61 E-value=2.4 Score=33.78 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=53.6
Q ss_pred CeEEEEcCCC-c-hHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------HhCC-CCC----CCCCeEEEeccCCC
Q psy14962 18 AKVLDIGSGS-G-FMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM-------RIRP-DLL----NDGRLHLRCRDGRT 83 (216)
Q Consensus 18 ~~vldiG~G~-G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-------~~~~-~~~----~~~~~~~~~~d~~~ 83 (216)
.+|.-+|+|. | .++..+++. +.+|+++|.+++.++.+.+.+. +.+. ... ...++.+ ..|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~---g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA---GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC---CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-
Confidence 3688888887 3 344444443 4589999999999876554322 2110 000 0002221 12211
Q ss_pred CCCCCCCccEEEecCCC-----CchHHHHHhcCCCCeEEEEeecC
Q psy14962 84 GLLHQAPFDAIYLSTYV-----PEIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
.-...|+|+...+- ..++..+.+.++++..+...+..
T Consensus 79 ---~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 79 ---DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred ---HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 12347999887652 24566777888888777443333
No 463
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.31 E-value=14 Score=29.85 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=54.1
Q ss_pred CeEEEEcCCC-c-hHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962 18 AKVLDIGSGS-G-FMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY 95 (216)
Q Consensus 18 ~~vldiG~G~-G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 95 (216)
.+|+-+|+|. | .++..+++. +..|+.++.+++.++..++. .|+................ .....+.||+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~-~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAE-TADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCC-CcccccccCEEE
Confidence 4799999998 4 455555554 34899999876655544331 1100000011111111110 111135799998
Q ss_pred ecCCC---CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 96 LSTYV---PEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 96 ~~~~~---~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
..--. ...++.+...+.++..++.....-.
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 75443 3355677788888887766654443
No 464
>PRK07340 ornithine cyclodeaminase; Validated
Probab=84.31 E-value=14 Score=30.01 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
....+|+-+|||. |...........+..++...+.+++..+...+.+... .+.+...+.... -...|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--------~~~~~~~~~~~a---v~~aDi 191 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--------GPTAEPLDGEAI---PEAVDL 191 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--------CCeeEECCHHHH---hhcCCE
Confidence 3567899999988 5555444433333347888999988766655555432 123332222211 135899
Q ss_pred EEecCCCCc-hHHHHHhcCCCCeEEEEe
Q psy14962 94 IYLSTYVPE-IPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 94 i~~~~~~~~-~~~~~~~~L~~gG~lv~~ 120 (216)
|++.-+... ++. ..+|||-.+...
T Consensus 192 VitaT~s~~Pl~~---~~~~~g~hi~~i 216 (304)
T PRK07340 192 VVTATTSRTPVYP---EAARAGRLVVAV 216 (304)
T ss_pred EEEccCCCCceeC---ccCCCCCEEEec
Confidence 998766544 222 246777655443
No 465
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.22 E-value=6.4 Score=31.48 Aligned_cols=99 Identities=19% Similarity=0.116 Sum_probs=53.1
Q ss_pred CeEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh---CCCC--CC-------CCCeEEEeccCCC
Q psy14962 18 AKVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI---RPDL--LN-------DGRLHLRCRDGRT 83 (216)
Q Consensus 18 ~~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~---~~~~--~~-------~~~~~~~~~d~~~ 83 (216)
.+|.-||+|. |. ++..+++. +..|+..|.+++.++.+.+..... +.+. .. ..++.+ ..+...
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS---GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH
Confidence 3678888876 33 33333333 458999999999988876543210 0000 00 011111 112111
Q ss_pred CCCCCCCccEEEecCCCCc-----hHHHHHhcCCCCeEEEEeecC
Q psy14962 84 GLLHQAPFDAIYLSTYVPE-----IPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~~~~ 123 (216)
.-...|+|+...+-.. ++..+.+.++++..+.....+
T Consensus 78 ---~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 78 ---AVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred ---hhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1134799997766542 345667788888766554433
No 466
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.13 E-value=2.3 Score=34.66 Aligned_cols=66 Identities=15% Similarity=0.028 Sum_probs=42.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEEEec
Q psy14962 20 VLDIGSGSGFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAIYLS 97 (216)
Q Consensus 20 vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~ 97 (216)
|+|+.||.|.++.-+.+. +.+ +.++|+++...+.-+.+.. . .+..+|...... .-..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~----------~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG----------N-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC----------C-CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999887655 345 5679999987766655432 1 234455543221 11347888766
Q ss_pred CC
Q psy14962 98 TY 99 (216)
Q Consensus 98 ~~ 99 (216)
.+
T Consensus 67 ~P 68 (315)
T TIGR00675 67 FP 68 (315)
T ss_pred CC
Confidence 55
No 467
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=84.09 E-value=2.9 Score=32.71 Aligned_cols=54 Identities=15% Similarity=0.029 Sum_probs=34.5
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 60 (216)
++..|.+.+... +..+++|.-||+|.++..+... ...|+.-|+++......+..
T Consensus 8 l~~~I~~~ip~~--~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~~~ 61 (260)
T PF02086_consen 8 LAKWIIELIPKN--KHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWKAV 61 (260)
T ss_dssp GHHHHHHHS-S---S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHHHH
Confidence 344555555311 6889999999999998877653 45899999999877666533
No 468
>PRK10637 cysG siroheme synthase; Provisional
Probab=84.08 E-value=11 Score=32.58 Aligned_cols=94 Identities=14% Similarity=-0.049 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCCchHH-HHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962 16 EGAKVLDIGSGSGFMS-CVFAELVGKTGRVFGV--EHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD 92 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~-~~l~~~~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 92 (216)
.+.+||-+|+|.-..- ...... .+++|+.+ +++++..+.+. ..++.++..+...... ..++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~--~ga~v~visp~~~~~~~~l~~------------~~~i~~~~~~~~~~dl--~~~~ 74 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLD--AGARLTVNALAFIPQFTAWAD------------AGMLTLVEGPFDESLL--DTCW 74 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHh------------CCCEEEEeCCCChHHh--CCCE
Confidence 5789999999883322 222222 24466555 66666543322 1567887776654333 3478
Q ss_pred EEEecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962 93 AIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSK 125 (216)
Q Consensus 93 ~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 125 (216)
+|++...-+.+-.++.+..+..|.++-.+..+.
T Consensus 75 lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~ 107 (457)
T PRK10637 75 LAIAATDDDAVNQRVSEAAEARRIFCNVVDAPK 107 (457)
T ss_pred EEEECCCCHHHhHHHHHHHHHcCcEEEECCCcc
Confidence 888887777777888888888888877766654
No 469
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.02 E-value=4.5 Score=33.98 Aligned_cols=46 Identities=17% Similarity=0.013 Sum_probs=33.9
Q ss_pred cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy14962 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61 (216)
Q Consensus 13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (216)
.+.++++||-|.+|.......++.. | .+|+++|++|......+=+.
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~--P-~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAG--P-KRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcC--C-ceEEEEeCCHHHHHHHHHHH
Confidence 4789999999987766665555543 3 49999999999876555443
No 470
>KOG1209|consensus
Probab=83.50 E-value=10 Score=29.26 Aligned_cols=74 Identities=19% Similarity=0.079 Sum_probs=46.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHH-HHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMRE-QCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------- 85 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 85 (216)
.....||-.||..|.++.++++.+. .+..|+++-.+-+ |-+.+.+ ..+.....|+.+..
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~------------~gl~~~kLDV~~~~~V~~v~~ 72 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ------------FGLKPYKLDVSKPEEVVTVSG 72 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh------------hCCeeEEeccCChHHHHHHHH
Confidence 3467899999999999999988774 3568888854443 3333322 12445555543211
Q ss_pred ----CCCCCccEEEecCCC
Q psy14962 86 ----LHQAPFDAIYLSTYV 100 (216)
Q Consensus 86 ----~~~~~~D~i~~~~~~ 100 (216)
.+.++.|+.+.+.+.
T Consensus 73 evr~~~~Gkld~L~NNAG~ 91 (289)
T KOG1209|consen 73 EVRANPDGKLDLLYNNAGQ 91 (289)
T ss_pred HHhhCCCCceEEEEcCCCC
Confidence 245778888766653
No 471
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=83.49 E-value=10 Score=26.88 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=39.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGK--TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA 93 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~ 93 (216)
.+.+|+-+|+|. .+..+++.+.. ...++.+|.+++..+...+.+.. ..+.....+.... -..+|+
T Consensus 18 ~~~~i~iiG~G~--~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~Dv 84 (155)
T cd01065 18 KGKKVLILGAGG--AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE--------LGIAIAYLDLEEL---LAEADL 84 (155)
T ss_pred CCCEEEEECCcH--HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh--------cccceeecchhhc---cccCCE
Confidence 467899999864 44444433211 24789999988766554443322 1011122222111 245899
Q ss_pred EEecCCCC
Q psy14962 94 IYLSTYVP 101 (216)
Q Consensus 94 i~~~~~~~ 101 (216)
|++..+..
T Consensus 85 vi~~~~~~ 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEeCcCCC
Confidence 98876654
No 472
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.25 E-value=18 Score=27.45 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.+.+||-+|+|. |......+.. .+++|+.++... .....+.... ..+.+......... -..+|+|
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~~--~~~l~~l~~~--------~~i~~~~~~~~~~~--l~~adlV 74 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPEL--TENLVKLVEE--------GKIRWKQKEFEPSD--IVDAFLV 74 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCC--CHHHHHHHhC--------CCEEEEecCCChhh--cCCceEE
Confidence 578999999977 4433322222 245788775432 1112222221 34555443332222 2358999
Q ss_pred EecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962 95 YLSTYVPEIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 95 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
++...-+.+-..+.+..+.+ .++-.+..+
T Consensus 75 iaaT~d~elN~~i~~~a~~~-~lvn~~d~~ 103 (202)
T PRK06718 75 IAATNDPRVNEQVKEDLPEN-ALFNVITDA 103 (202)
T ss_pred EEcCCCHHHHHHHHHHHHhC-CcEEECCCC
Confidence 98877766655666555444 455444444
No 473
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.22 E-value=10 Score=29.26 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------- 86 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 86 (216)
.+.++|-.|++ |.++..+++.+. .+.+|+.++.+++.++...+.+...+ .++.++..|......
T Consensus 5 ~~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 5 NGKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG------GEAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHH
Confidence 35678877765 444444444332 25689999988877766655554422 457778888753210
Q ss_pred --CCCCccEEEecCCC
Q psy14962 87 --HQAPFDAIYLSTYV 100 (216)
Q Consensus 87 --~~~~~D~i~~~~~~ 100 (216)
..+.+|+++.+...
T Consensus 78 ~~~~~~id~li~~ag~ 93 (254)
T PRK07478 78 VERFGGLDIAFNNAGT 93 (254)
T ss_pred HHhcCCCCEEEECCCC
Confidence 12468999877653
No 474
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.06 E-value=7.1 Score=27.41 Aligned_cols=76 Identities=17% Similarity=0.081 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i 94 (216)
.+.+|+-+|+|- |......+...+. .+++.+..+.+..+...+.+.. .++.+...+-.. .....+|+|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~--------~~~~~~~~~~~~--~~~~~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG--------VNIEAIPLEDLE--EALQEADIV 79 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG--------CSEEEEEGGGHC--HHHHTESEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc--------cccceeeHHHHH--HHHhhCCeE
Confidence 588999999966 4444444444332 3699999887765544444421 445555544221 112469999
Q ss_pred EecCCCCc
Q psy14962 95 YLSTYVPE 102 (216)
Q Consensus 95 ~~~~~~~~ 102 (216)
+...+...
T Consensus 80 I~aT~~~~ 87 (135)
T PF01488_consen 80 INATPSGM 87 (135)
T ss_dssp EE-SSTTS
T ss_pred EEecCCCC
Confidence 98877654
No 475
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=82.97 E-value=12 Score=31.49 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=55.5
Q ss_pred eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQC-EDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS 97 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~ 97 (216)
.|+-++=..|.+++.++.. ++ +.+ .++-.. ...++++..++. ....+++. +....+ .+.+|+|+.-
T Consensus 47 ~~~i~nd~fGal~~~l~~~-~~----~~~-~ds~~~~~~~~~n~~~n~~---~~~~~~~~--~~~~~~--~~~~d~vl~~ 113 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH-KP----YSI-GDSYISELATRENLRLNGI---DESSVKFL--DSTADY--PQQPGVVLIK 113 (378)
T ss_pred CEEEEcCchhHHHHHHHhC-CC----Cee-ehHHHHHHHHHHHHHHcCC---Ccccceee--cccccc--cCCCCEEEEE
Confidence 8999999999999999854 33 222 123222 234456666552 11223333 322222 2348999887
Q ss_pred CCC-----CchHHHHHhcCCCCeEEEEee
Q psy14962 98 TYV-----PEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 98 ~~~-----~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.+- ++.+..+.++|.||+.+++..
T Consensus 114 ~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 114 VPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred eCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 663 446688889999999987543
No 476
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=82.75 E-value=4.9 Score=29.83 Aligned_cols=98 Identities=19% Similarity=0.117 Sum_probs=52.1
Q ss_pred eEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------hCCCC-----CCCCCeEEEeccCCCC
Q psy14962 19 KVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR-------IRPDL-----LNDGRLHLRCRDGRTG 84 (216)
Q Consensus 19 ~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-------~~~~~-----~~~~~~~~~~~d~~~~ 84 (216)
+|.-+|+|+ |. ++..++.. +.+|+..|.+++.++.+++.+.+ .+... ....++.+ ..|...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA---GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT---TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH-
Confidence 467889988 53 33333433 56999999999999888776553 11000 00012321 222211
Q ss_pred CCCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEeecCC
Q psy14962 85 LLHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 85 ~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
-...|+|+...+-. .++.++.+.+.|+..|.-.+.+.
T Consensus 76 ---~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 76 ---AVDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp ---GCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred ---HhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 12479998876532 25677778888888876654433
No 477
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.74 E-value=8.8 Score=31.46 Aligned_cols=78 Identities=17% Similarity=0.059 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------- 86 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 86 (216)
.+.+||-.|++. .++..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|+.+...
T Consensus 6 ~~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 6 HGAVVVITGASS-GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence 456788887754 4444444333 135689999999888777666655433 456777788753210
Q ss_pred --CCCCccEEEecCCC
Q psy14962 87 --HQAPFDAIYLSTYV 100 (216)
Q Consensus 87 --~~~~~D~i~~~~~~ 100 (216)
..+.+|+++.+...
T Consensus 79 ~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 79 ASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHhcCCCCEEEECCCc
Confidence 11568999887663
No 478
>KOG0821|consensus
Probab=82.45 E-value=3.1 Score=32.08 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR 82 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (216)
..+-|++||.|+|.++..+.... ..+...+|.++..+.-.+-.... . +.+..+.+.|+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EA-a-----~~~~~IHh~D~L 108 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEA-A-----PGKLRIHHGDVL 108 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhc-C-----CcceEEeccccc
Confidence 45689999999999999988762 23777888887765544332221 1 345666666653
No 479
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.38 E-value=13 Score=29.76 Aligned_cols=97 Identities=18% Similarity=0.124 Sum_probs=49.6
Q ss_pred eEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 19 KVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 19 ~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
+|+-+|+|. |. ++..+++. +.+|+.++.+++.++..++. +.. ....... ..............+|+|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~---g~~V~~~~r~~~~~~~~~~~----g~~-~~~~~~~-~~~~~~~~~~~~~~~d~vil 72 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA---GHDVTLVARRGAHLDALNEN----GLR-LEDGEIT-VPVLAADDPAELGPQDLVIL 72 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC---CCeEEEEECChHHHHHHHHc----CCc-ccCCcee-ecccCCCChhHcCCCCEEEE
Confidence 578899887 43 33333332 45899999877665544432 210 0000110 00000111111256899988
Q ss_pred cCCCCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962 97 STYVPE---IPYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 97 ~~~~~~---~~~~~~~~L~~gG~lv~~~~~~ 124 (216)
.-.... ++..+...+.++..++......
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 766433 4566667777776666544443
No 480
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.36 E-value=20 Score=27.91 Aligned_cols=79 Identities=9% Similarity=-0.028 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--------
Q psy14962 16 EGAKVLDIGSGS-GFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------- 85 (216)
Q Consensus 16 ~~~~vldiG~G~-G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 85 (216)
.+++++-.|+++ +.++..+++.+. .+++|+.++.+....+..++..... ...++.++..|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL-----EGQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc-----CCCceEEEecCCCCHHHHHHHHHH
Confidence 477899999873 666666666553 3568888765432222222222221 0245677788875321
Q ss_pred --CCCCCccEEEecCC
Q psy14962 86 --LHQAPFDAIYLSTY 99 (216)
Q Consensus 86 --~~~~~~D~i~~~~~ 99 (216)
...+++|+++.+..
T Consensus 81 ~~~~~g~ld~lv~nag 96 (257)
T PRK08594 81 IKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHhCCCccEEEECcc
Confidence 01256898876543
No 481
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.34 E-value=15 Score=29.23 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=41.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHH-HHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962 17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMRE-QCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------- 86 (216)
Q Consensus 17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 86 (216)
+.++|-.|++ |.++..+++.+. .+.+|+.++.++. ..+.....+... ..++.++..|+.....
T Consensus 46 ~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 46 GKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE------GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHHH
Confidence 5678888764 444555544432 2568888877642 233333333322 2467788888753210
Q ss_pred --CCCCccEEEecCC
Q psy14962 87 --HQAPFDAIYLSTY 99 (216)
Q Consensus 87 --~~~~~D~i~~~~~ 99 (216)
..+.+|+++.+..
T Consensus 119 ~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 119 VRELGRLDILVNNAA 133 (290)
T ss_pred HHHcCCCCEEEECCc
Confidence 0135788886554
No 482
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=82.34 E-value=17 Score=29.29 Aligned_cols=92 Identities=18% Similarity=0.093 Sum_probs=57.1
Q ss_pred CCeEEEEcC--CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-c-cCCCC--CCCCCC
Q psy14962 17 GAKVLDIGS--GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-R-DGRTG--LLHQAP 90 (216)
Q Consensus 17 ~~~vldiG~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~-d~~~~--~~~~~~ 90 (216)
+.+||-.|+ +.|..+..+++... +.+|+++..+++..+.+++. + .+. ++. . +.... ....+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~~----g-----~~~--~~~~~~~~~~~i~~~~~~~ 216 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLEL----G-----AHH--VIDHSKPLKAQLEKLGLEA 216 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHc----C-----CCE--EEECCCCHHHHHHHhcCCC
Confidence 889998885 33778788888751 35899998777766666431 1 111 121 1 11000 012346
Q ss_pred ccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
+|+|+....-........++|+++|+++..
T Consensus 217 vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 217 VSYVFSLTHTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred CCEEEEcCCcHHHHHHHHHHhccCCEEEEE
Confidence 899986443445667888999999999864
No 483
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=82.23 E-value=11 Score=29.37 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------- 86 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 86 (216)
.+.+++-.|++.| ++..+++.+ ..+.+|+.++.+++.++.....+...+ .++.++..|......
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG------IEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence 4677888887654 333333322 225689988988877766655554422 467788888753210
Q ss_pred --CCCCccEEEecCCC
Q psy14962 87 --HQAPFDAIYLSTYV 100 (216)
Q Consensus 87 --~~~~~D~i~~~~~~ 100 (216)
..+.+|+++.+...
T Consensus 82 ~~~~~~id~li~~ag~ 97 (265)
T PRK07097 82 EKEVGVIDILVNNAGI 97 (265)
T ss_pred HHhCCCCCEEEECCCC
Confidence 11468999877664
No 484
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=82.13 E-value=3.2 Score=27.66 Aligned_cols=50 Identities=8% Similarity=-0.039 Sum_probs=34.3
Q ss_pred CeEEEeccCCCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962 73 RLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122 (216)
Q Consensus 73 ~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 122 (216)
++.+..............+|+|+..+...+.++.+.+.+.+-|.-+....
T Consensus 30 ~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 30 PLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred cEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 35555444332222234589999999999999999999998887665444
No 485
>KOG2782|consensus
Probab=82.08 E-value=2.5 Score=32.52 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=46.3
Q ss_pred hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy14962 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61 (216)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~ 61 (216)
|...+++.+. ..+|...+|.--|.|..+..+.++. +..+++++|.+|-..+.|....
T Consensus 31 m~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 31 MLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred ehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence 5566777776 3678999999999999998888874 5678999999998888777554
No 486
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.70 E-value=15 Score=28.57 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------CCC
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------LHQ 88 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 88 (216)
.+.+++-.|++. .++..+++.+. .+++|++++.+++..+...+.+.... ..++.++..|+.... ...
T Consensus 6 ~~k~vlItG~~~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 6 AGKRVLITGASK-GIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHh
Confidence 367888888644 44444443331 25699999998887766655554321 245777888875321 012
Q ss_pred CCccEEEecCC
Q psy14962 89 APFDAIYLSTY 99 (216)
Q Consensus 89 ~~~D~i~~~~~ 99 (216)
+..|+++.+..
T Consensus 80 g~id~lv~~ag 90 (259)
T PRK06125 80 GDIDILVNNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 56899887655
No 487
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.48 E-value=9.4 Score=28.85 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=60.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-----
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAEL---VGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH----- 87 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~---~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----- 87 (216)
+...|+|+|.-.|..++.+|.. .|...+|+++|++-..+.-+... .+++.++.++.......
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i~f~egss~dpai~eqi~~ 138 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDILFIEGSSTDPAIAEQIRR 138 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCeEEEeCCCCCHHHHHHHHH
Confidence 3568999999988877666543 33336999999887765443322 26799999987543211
Q ss_pred -CCCccEEEecCCCC----chH---HHHHhcCCCCeEEEEeecCC
Q psy14962 88 -QAPFDAIYLSTYVP----EIP---YSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 88 -~~~~D~i~~~~~~~----~~~---~~~~~~L~~gG~lv~~~~~~ 124 (216)
.+.+--|++..... +.+ +....+|.-|-++++-...-
T Consensus 139 ~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 139 LKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred HhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence 12333444433322 233 44456788899988854433
No 488
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.33 E-value=33 Score=29.23 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=58.6
Q ss_pred HHHhcccCCCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL 85 (216)
Q Consensus 7 ~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (216)
...+........+++-+|+|. .+..+++.+. .+..++.+|.+++.++..++.. ..+.++.+|.....
T Consensus 221 ~~~~~~~~~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i~gd~~~~~ 288 (453)
T PRK09496 221 MSEFGRLEKPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVLHGDGTDQE 288 (453)
T ss_pred HHHhCccCCCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEEECCCCCHH
Confidence 333333333457888888855 4444444432 2458999999999877665532 34678888875321
Q ss_pred ----CCCCCccEEEecCCCCc--h-HHHHHhcCCCCeEEEEeecCC
Q psy14962 86 ----LHQAPFDAIYLSTYVPE--I-PYSILLQLKPGGRLVCGVGKS 124 (216)
Q Consensus 86 ----~~~~~~D~i~~~~~~~~--~-~~~~~~~L~~gG~lv~~~~~~ 124 (216)
..-..+|.|++...-.. . ...+.+.+.+. .++..+.++
T Consensus 289 ~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~-~ii~~~~~~ 333 (453)
T PRK09496 289 LLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK-KVIALVNRP 333 (453)
T ss_pred HHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC-eEEEEECCc
Confidence 11246788877554322 1 12333444443 445444444
No 489
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=81.30 E-value=18 Score=30.49 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=24.8
Q ss_pred eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy14962 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 59 (216)
+|.-+|.|. ++..++..+..+.+|+++|.+++.++..++
T Consensus 2 kI~VIGlGy--vGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGY--VGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 355566654 333333322224689999999999887765
No 490
>PRK05599 hypothetical protein; Provisional
Probab=80.95 E-value=14 Score=28.52 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=47.2
Q ss_pred eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----------CC
Q psy14962 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----------HQ 88 (216)
Q Consensus 19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~ 88 (216)
+++-.|++. .++..+++.+..+.+|+.++.+++.++...+.+...+ ..++.++..|+.+... ..
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 75 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-----ATSVHVLSFDAQDLDTHRELVKQTQELA 75 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-----CCceEEEEcccCCHHHHHHHHHHHHHhc
Confidence 467677654 4566666655556789888888887776666555422 2346677788653210 12
Q ss_pred CCccEEEecCCC
Q psy14962 89 APFDAIYLSTYV 100 (216)
Q Consensus 89 ~~~D~i~~~~~~ 100 (216)
+..|+++.+.+.
T Consensus 76 g~id~lv~nag~ 87 (246)
T PRK05599 76 GEISLAVVAFGI 87 (246)
T ss_pred CCCCEEEEecCc
Confidence 568988876553
No 491
>KOG1201|consensus
Probab=80.82 E-value=13 Score=30.00 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCCch---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962 16 EGAKVLDIGSGSGF---MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------- 85 (216)
Q Consensus 16 ~~~~vldiG~G~G~---~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 85 (216)
.|..||--|+|+|. ++.++|++ ++.+...|++++......+..++. .++.....|..+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~-------g~~~~y~cdis~~eei~~~a~ 106 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKI-------GEAKAYTCDISDREEIYRLAK 106 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhc-------CceeEEEecCCCHHHHHHHHH
Confidence 57889999999974 55666766 458888899998887777776653 26788888875321
Q ss_pred ---CCCCCccEEEecCCC
Q psy14962 86 ---LHQAPFDAIYLSTYV 100 (216)
Q Consensus 86 ---~~~~~~D~i~~~~~~ 100 (216)
..-+..|+++.+++.
T Consensus 107 ~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 107 KVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHhcCCceEEEecccc
Confidence 112678999988775
No 492
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=80.72 E-value=18 Score=29.29 Aligned_cols=93 Identities=19% Similarity=0.167 Sum_probs=53.5
Q ss_pred cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHHHHHhCCCCCCCCCeEEEecc------
Q psy14962 13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMR----EQCEDAWETVMRIRPDLLNDGRLHLRCRD------ 80 (216)
Q Consensus 13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~d------ 80 (216)
.+.++.+||-.|+ |. |..+..+++..+ ..++.+..++ +..+.++ +.+ ... ++...
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~----~~g-----~~~--~~~~~~~~~~~ 209 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLK----ALG-----ADH--VLTEEELRSLL 209 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHH----hcC-----CCE--EEeCccccccc
Confidence 4578999999886 33 788888888865 4666654343 2333332 211 111 11111
Q ss_pred CCC---CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 81 GRT---GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 81 ~~~---~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
... ..... .+|+|+....-. ......+.|+++|.++..
T Consensus 210 ~~~~i~~~~~~-~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~ 250 (341)
T cd08290 210 ATELLKSAPGG-RPKLALNCVGGK-SATELARLLSPGGTMVTY 250 (341)
T ss_pred HHHHHHHHcCC-CceEEEECcCcH-hHHHHHHHhCCCCEEEEE
Confidence 000 01112 589998765544 345677899999998864
No 493
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.60 E-value=28 Score=27.88 Aligned_cols=98 Identities=20% Similarity=0.098 Sum_probs=54.5
Q ss_pred CeEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-------CCCCC-----CCCCeEEEeccCCC
Q psy14962 18 AKVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-------RPDLL-----NDGRLHLRCRDGRT 83 (216)
Q Consensus 18 ~~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-------~~~~~-----~~~~~~~~~~d~~~ 83 (216)
.+|.-+|+|. |. ++..++.. +..|+..|.+++.++.+.+..... +.... ...++.+ ..|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~- 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA---GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLE- 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHH-
Confidence 5788899987 33 33333333 458999999999887765433221 10000 0011221 11211
Q ss_pred CCCCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEeecC
Q psy14962 84 GLLHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGVGK 123 (216)
Q Consensus 84 ~~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~ 123 (216)
.-...|+|+...+-. .++..+...++++..++..+.+
T Consensus 80 ---~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 80 ---DLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred ---HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 113579999876542 3456777888888877644433
No 494
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.54 E-value=8.6 Score=30.65 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=45.4
Q ss_pred eEEEEcCCC-c-hHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962 19 KVLDIGSGS-G-FMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96 (216)
Q Consensus 19 ~vldiG~G~-G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 96 (216)
+|.-+|+|. | .++..+.+. +.+|+++|.+++.++.+.+. + .+.....+. . .-...|+|+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~----g-------~~~~~~~~~--~--~~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIER----G-------LVDEASTDL--S--LLKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHC----C-------CcccccCCH--h--HhcCCCEEEE
Confidence 466788766 3 333444333 45899999999877666532 1 111111111 1 1134799998
Q ss_pred cCCCCc---hHHHHHhcCCCCeEE
Q psy14962 97 STYVPE---IPYSILLQLKPGGRL 117 (216)
Q Consensus 97 ~~~~~~---~~~~~~~~L~~gG~l 117 (216)
..+... ..+.+...++++..+
T Consensus 64 avp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 64 ALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcEE
Confidence 877644 345566666666444
No 495
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=80.53 E-value=7.8 Score=31.11 Aligned_cols=96 Identities=24% Similarity=0.240 Sum_probs=58.2
Q ss_pred cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--C---CC
Q psy14962 13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--T---GL 85 (216)
Q Consensus 13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~---~~ 85 (216)
.+.++.+|+-.|++. |.....+++.. +.+++.++.++...+.+... + ....+...+.. . ..
T Consensus 163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~ 230 (342)
T cd08266 163 RLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKEL----G------ADYVIDYRKEDFVREVREL 230 (342)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C------CCeEEecCChHHHHHHHHH
Confidence 356788999998864 66666667664 45899998888766655321 1 11111111100 0 00
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~ 121 (216)
.....+|+++...+.. ....+.+.++++|.++...
T Consensus 231 ~~~~~~d~~i~~~g~~-~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 231 TGKRGVDVVVEHVGAA-TWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred hCCCCCcEEEECCcHH-HHHHHHHHhhcCCEEEEEe
Confidence 1124589998766543 4567778899999987754
No 496
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.48 E-value=19 Score=27.64 Aligned_cols=79 Identities=11% Similarity=0.021 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--------
Q psy14962 15 QEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------- 85 (216)
Q Consensus 15 ~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 85 (216)
.++.+|+-.|+ +|.++..+++.+. .+.+|++++.++...+...+.+...+ ..++.++..|+....
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~d~~~~~~~~~~~~~ 83 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-----GPQPAIIPLDLLTATPQNYQQLA 83 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-----CCCceEEEecccCCCHHHHHHHH
Confidence 46778888885 5566665555442 24599999998876665555554422 245667777764211
Q ss_pred ----CCCCCccEEEecCC
Q psy14962 86 ----LHQAPFDAIYLSTY 99 (216)
Q Consensus 86 ----~~~~~~D~i~~~~~ 99 (216)
...++.|.++.+..
T Consensus 84 ~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 84 DTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHhCCCCEEEECCc
Confidence 01146899987654
No 497
>PRK08589 short chain dehydrogenase; Validated
Probab=80.47 E-value=13 Score=29.14 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------- 86 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 86 (216)
.+.++|-.|++.| ++..+++.+. .+.+|+.++.+ +.++...+.+...+ .++.++..|+.....
T Consensus 5 ~~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG------GKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHH
Confidence 4667888877554 4444444332 35699999988 44444444443322 457778888753210
Q ss_pred --CCCCccEEEecCCC
Q psy14962 87 --HQAPFDAIYLSTYV 100 (216)
Q Consensus 87 --~~~~~D~i~~~~~~ 100 (216)
..+..|+++.+...
T Consensus 77 ~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 77 KEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHcCCcCEEEECCCC
Confidence 11468998876653
No 498
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.09 E-value=18 Score=27.92 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962 16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------- 86 (216)
Q Consensus 16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 86 (216)
++.+++-.|+ +|.++..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++.+|......
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHHHH
Confidence 5778888886 444555554443 235699999998877666555554422 457788888753210
Q ss_pred --CCCCccEEEecCC
Q psy14962 87 --HQAPFDAIYLSTY 99 (216)
Q Consensus 87 --~~~~~D~i~~~~~ 99 (216)
..+++|.++.+..
T Consensus 83 ~~~~~~id~vi~~ag 97 (256)
T PRK06124 83 DAEHGRLDILVNNVG 97 (256)
T ss_pred HHhcCCCCEEEECCC
Confidence 1146788887655
No 499
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=80.07 E-value=6.2 Score=31.59 Aligned_cols=93 Identities=19% Similarity=0.125 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcCC--CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CC---CCC
Q psy14962 14 IQEGAKVLDIGSG--SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GR---TGL 85 (216)
Q Consensus 14 ~~~~~~vldiG~G--~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~ 85 (216)
+.++.+||-.|++ .|..+..+++..+ .+++++..++...+.+++. + .+. ++... .. ...
T Consensus 136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~--~~~~~~~~~~~~~~~~ 202 (323)
T cd05282 136 LPPGDWVIQNAANSAVGRMLIQLAKLLG--FKTINVVRRDEQVEELKAL----G-----ADE--VIDSSPEDLAQRVKEA 202 (323)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecChHHHHHHHhc----C-----CCE--EecccchhHHHHHHHH
Confidence 5678999988873 3788888888864 5888887777666555321 1 111 11111 00 011
Q ss_pred CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962 86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120 (216)
Q Consensus 86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~ 120 (216)
.....+|+|+....-.. .....+.|+++|+++..
T Consensus 203 ~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~ 236 (323)
T cd05282 203 TGGAGARLALDAVGGES-ATRLARSLRPGGTLVNY 236 (323)
T ss_pred hcCCCceEEEECCCCHH-HHHHHHhhCCCCEEEEE
Confidence 12346899997665443 45667899999998764
No 500
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=79.81 E-value=19 Score=29.47 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=52.6
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEE-eccCCCCCCCCCCcc
Q psy14962 15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLR-CRDGRTGLLHQAPFD 92 (216)
Q Consensus 15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~D 92 (216)
+...++.-+|||. |...........+..+|...|.+++..+...+.+.+.+ +.+. ..+.... . ...|
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g--------~~v~~~~~~~ea-v--~~aD 194 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYE--------VPVRAATDPREA-V--EGCD 194 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhC--------CcEEEeCCHHHH-h--ccCC
Confidence 3457888999988 55443333333344588999999988776655554422 2222 2222211 1 3479
Q ss_pred EEEecCCCCc-hHHHHHhcCCCCeEEEE
Q psy14962 93 AIYLSTYVPE-IPYSILLQLKPGGRLVC 119 (216)
Q Consensus 93 ~i~~~~~~~~-~~~~~~~~L~~gG~lv~ 119 (216)
+|++.-+... ++ -...||||-.+..
T Consensus 195 iVitaT~s~~P~~--~~~~l~~g~~v~~ 220 (325)
T TIGR02371 195 ILVTTTPSRKPVV--KADWVSEGTHINA 220 (325)
T ss_pred EEEEecCCCCcEe--cHHHcCCCCEEEe
Confidence 9987655432 11 2356788766543
Done!