RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14962
(216 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 122 bits (309), Expect = 5e-35
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 8/143 (5%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A ++ELLE ++ G +VL+IGSGSG+++ FA +VG+ G V +EH+ E E A + +
Sbjct: 63 AMMLELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK 120
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
+ + + + DGR G AP+DAI++ PEIP +++ QLK GGRLV VG
Sbjct: 121 LGLE-----NVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGP 175
Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
+ + + D+ DG+ K
Sbjct: 176 NGN-QVLQQFDKRNDGSVVIKDL 197
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 114 bits (287), Expect = 1e-31
Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 11/138 (7%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
AR+++LLE K G +VL+IG+GSG+ + V A LVG RV +E + E E A
Sbjct: 61 VARMLQLLELK--PGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQA----- 110
Query: 63 RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
R + L + +R DG G +AP+D I ++ PE+P ++L QLKPGGRLV VG
Sbjct: 111 RRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG 170
Query: 123 KSKSYHRMTVIDRSEDGT 140
+ R+ I + DG
Sbjct: 171 SGPA-QRLLRITKDGDGN 187
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 95.3 bits (237), Expect = 3e-24
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A + ELLE ++ G KVL+IG+GSG+ + V AE+VG+ G V +E + E A + R
Sbjct: 67 AMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPEL---AEKAERR 121
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
+R L + + DG G AP+D IY++ P+IP +++ QLK GG LV VG+
Sbjct: 122 LRK--LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE 179
Query: 124 SKSY 127
Sbjct: 180 YLQV 183
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 93.0 bits (232), Expect = 2e-23
Identities = 51/137 (37%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
AR+ ELLE K G +VL+IG+GSG+ + V A LV RVF VE ++ +A
Sbjct: 67 VARMTELLELK--PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEA----- 116
Query: 63 RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
+ R L + +R DG G APFD I ++ PEIP ++L QLK GG LV VG
Sbjct: 117 KRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG 176
Query: 123 KSKSYHRMTVIDRSEDG 139
+T + +
Sbjct: 177 GE-EQQLLTRVRKRGGR 192
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 87.4 bits (217), Expect = 2e-21
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
ELL+ K EG KVL+IG+GSG+ + V AE+VGK+G+V +E + E E A +T+ ++ D
Sbjct: 70 ELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD 127
Query: 68 LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
+ + DG G AP+D IY++ P+IP ++ QLK GG +V VG
Sbjct: 128 -----NVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGS 178
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 83.0 bits (205), Expect = 5e-19
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH 75
+G +VL+IG G+G+ + V + +VG+ G V VE+ R+ CE A V R L +
Sbjct: 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-----LGIENVI 134
Query: 76 LRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLV 118
C DG G+ AP+D I+++ V E+P + QLK GGR++
Sbjct: 135 FVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVI 177
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 77.9 bits (192), Expect = 9e-18
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 10/153 (6%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A + EL+EP+ G K+L++G+GSG+ + V AE + + G+V+ VE ++E A + + R
Sbjct: 62 AMMCELIEPR--PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER 119
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
L G + + DG+ GL APFDAI ++ IP +++ QLK GG LV V +
Sbjct: 120 ----LGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPV-E 174
Query: 124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPL 156
+ + + + +K I+ F+ PL
Sbjct: 175 EGVGQVLYKVVKRGEK--VEKRAITYVLFV-PL 204
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 66.6 bits (163), Expect = 4e-13
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
QA ++E + G +VL+IGSG G+ + + AELVG +G V V+ D +
Sbjct: 71 QAMMLEQAGV--EPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVD------IDE-DVTD 120
Query: 63 RIRPDLLNDG--RLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLV-- 118
R R L G ++ + D G+ AP+D I ++ +IP + L QL PGGRLV
Sbjct: 121 RARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAPGGRLVVP 180
Query: 119 ---CGVGKSKSYHR 129
G+ +S ++ R
Sbjct: 181 LRMRGLTRSIAFER 194
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 60.8 bits (148), Expect = 3e-11
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
I G++VL+ G+GSG ++ A VG G V E + + A E + L + R
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGD--R 147
Query: 74 LHLRCRDGRTGLLHQAPFDAIYLSTYVPE--IPYSILLQLKPGGRLVC 119
+ L+ D R G+ + DA++L P + + LKPGG +V
Sbjct: 148 VTLKLGDVREGIDEE-DVDAVFLDLPDPWNVLE-HVSDALKPGGVVVV 193
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 59.7 bits (145), Expect = 1e-10
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 27/128 (21%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
AR++E L+ +++G +VL+IG+G+G+ + + +G V VE
Sbjct: 97 ARMLEALD--VEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVE--------------- 138
Query: 64 IRPDLLNDGRLHLR---CR------DGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPG 114
+ P L L DG G +AP+D I + V +P + L Q +PG
Sbjct: 139 VDPGLAARAASALAAAGYAPTVVTGDGLLGHPPRAPYDRIIATCAVRRVPPAWLRQTRPG 198
Query: 115 GRLVCGVG 122
G ++ +
Sbjct: 199 GVILTTLS 206
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 54.6 bits (132), Expect = 5e-10
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH 75
GA+VLDIG G+G ++ A L RV GV+ E E A E L R+
Sbjct: 1 PGARVLDIGCGTGSLAIELARLF-PGARVTGVDLSPEMLELARE-----NAKLALGPRIT 54
Query: 76 LRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLV 118
D L FDA+++ ++ +L LKPGGRLV
Sbjct: 55 FVQGDAPDALDLLEGFDAVFIGGGGGDLL-ELLDALASLLKPGGRLV 100
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 56.1 bits (136), Expect = 1e-09
Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 30/132 (22%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHM----REQC 54
+AR ELL Q G +VLD+G G G + A VG GRV G+ E M +E+
Sbjct: 7 YRARTFELLAV--QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA 64
Query: 55 EDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST----YVPEIPYS---I 107
V +R D L DG FDA+ S ++ + + I
Sbjct: 65 AGLGPNVEFVRGDA-----DGLPFPDGS--------FDAVR-SDRVLQHLEDPARALAEI 110
Query: 108 LLQLKPGGRLVC 119
L+PGGR+V
Sbjct: 111 ARVLRPGGRVVV 122
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 50.9 bits (122), Expect = 1e-08
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC 78
+VLD+G G+G ++ A G RV GV+ E + R L + +
Sbjct: 1 RVLDLGCGTGALALALASGPGA--RVTGVDISPVALE-----LARKAAAALLADNVEVLK 53
Query: 79 RDGRTGLL-HQAPFDAIYLS---TYVPEIPYSILLQ----LKPGGRLVCGV 121
D FD I ++ E L + LKPGG LV +
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 47.8 bits (114), Expect = 2e-07
Identities = 33/118 (27%), Positives = 42/118 (35%), Gaps = 20/118 (16%)
Query: 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL 76
G +VLD G+GSG + A G RV GV E +A R R+ +
Sbjct: 1 GDRVLDPGAGSGAFL-LAAARAGPDARVVGV----ELDPEAAALARRRLALAGLAPRVRV 55
Query: 77 RCRDGR-TGLLHQAPFDAIYLST-YVPEIPY-------------SILLQLKPGGRLVC 119
D R L FD + + Y P + L LKPGG LV
Sbjct: 56 VVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 44.4 bits (105), Expect = 6e-06
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
++ G KVLD+G G+G+++ + AE +G V G++ E E A + L
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA-----KENAKKLGYEN 55
Query: 74 LHLRCRD---GRTGLLHQAPFD------AIYLSTYVPEIPYSILLQLKPGGRLVC 119
+ D L FD + ++ I+ LKPGG L+
Sbjct: 56 VEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIV 110
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 44.9 bits (107), Expect = 1e-05
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV 47
+++ G VLD+GSG GF + A VG TG+V GV
Sbjct: 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGV 108
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 44.4 bits (105), Expect = 2e-05
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
+ II +LE ++ G+ V + G+GSG +S A V TG ++ E ++ + A E
Sbjct: 92 SLIIMMLE--LKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFRE 149
Query: 64 IRPDLLNDGRLHLRCRDG-RTGLLHQAPFDAIYLSTYVP--EIPYSILLQLKPGGRLVC 119
D L C+ G T + ++A DA++L P IP++ GGRL
Sbjct: 150 HGLDSLVTVTHRDVCKSGFDTEVSNKA--DAVFLDLPAPWEAIPHAAKALKVEGGRLCS 206
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 43.4 bits (103), Expect = 2e-05
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A + L P + G ++ DIG+G+G ++ +A L G +GRV + E+ E+A E + R
Sbjct: 24 ALTLSKLRP--RPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAI----ERDEEALELIER 76
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL--STYVPEIPYSILLQLKPGGRLV 118
L + D L DAI++ + EI + +LKPGGRLV
Sbjct: 77 NA-ARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLV 132
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 42.9 bits (101), Expect = 3e-05
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
R + L + ++++G +LDIG G+G ++ + LVG+TG+V+ V+
Sbjct: 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVD 72
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 39.9 bits (94), Expect = 8e-05
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
Query: 21 LDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD 80
LD+G G+G ++ A G RV GV+ E A + R + L D
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARK---RAPRKFVVGDAEDLPFPD 55
Query: 81 GRTGLLHQAPFDAIYLSTYVPEIPY-SILLQ-----LKPGGRLVC 119
FD + S + +P L+ LKPGG+LV
Sbjct: 56 ES--------FDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 39.9 bits (94), Expect = 4e-04
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 38/127 (29%)
Query: 12 PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLND 71
I+ G KVLD+ G+G M+ + A+ VG TG V G++ I +L
Sbjct: 47 LGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLD---------------ISESMLEV 90
Query: 72 GRLHLRCRDGRTGLLHQAP----------FDAIYLST---YVPEIP------YSILLQLK 112
R L+ + + FDA+ +S V +I Y + LK
Sbjct: 91 AREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRV---LK 147
Query: 113 PGGRLVC 119
PGGRL+
Sbjct: 148 PGGRLLV 154
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 39.8 bits (94), Expect = 4e-04
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 40/133 (30%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
I+ L + G KVLD+ G+G ++ A+ VGKTG V G+ D
Sbjct: 44 IKWLGVR--PGDKVLDLACGTGDLAIALAKAVGKTGEVVGL--------D-------FSE 86
Query: 67 DLLNDGRLHLRCRDGRTGL-LHQA-----P-----FDAIYLSTY----VPEIPYSILLQ- 110
+L GR LR + Q P FDA+ ++ + VP+I + L+
Sbjct: 87 GMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA-FGLRNVPDIDKA--LRE 143
Query: 111 ----LKPGGRLVC 119
LKPGGRLV
Sbjct: 144 MYRVLKPGGRLVI 156
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 39.4 bits (92), Expect = 5e-04
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 29/121 (23%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
+Q G LD+ G+ S AE VG G V G+ D E ++ + + D
Sbjct: 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGL--------DFSENMLSVGRQKVKDAG 94
Query: 74 LHLRCRDGRTGLLH----QAP-----FDAIYLSTYVPEIP-YSILLQ-----LKPGGRLV 118
LH L+H + P FD + + + +P Y +L+ +KPGG++V
Sbjct: 95 LH------NVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148
Query: 119 C 119
C
Sbjct: 149 C 149
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 38.5 bits (90), Expect = 5e-04
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 20/123 (16%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
R + L + +++ G + DIG+G+G ++ A LV GRV+ +E R +A + + R
Sbjct: 8 RALTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIE--RN--PEALDLIER- 61
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAP------FDAIYL---STYVPEIPYSILLQLKPGG 115
N R + G +AP DA+++ + EI ++ +L+PGG
Sbjct: 62 -----NLRRFGVSNIVIVEGDAPEAPEDLLPDPDAVFVGGSGGLLQEILEAVERRLRPGG 116
Query: 116 RLV 118
R+V
Sbjct: 117 RIV 119
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 39.4 bits (92), Expect = 6e-04
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
Query: 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETVMRIRPDLLNDG 72
G K LD+ G+G + ++ G +G+V G+ E+M ++ E + + + L
Sbjct: 47 RGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGN 106
Query: 73 RLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPY---SILLQLKPGGRLVC 119
L D FD + +S P+ LKPGGR+VC
Sbjct: 107 AEELPFEDD--------SFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVC 151
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 38.3 bits (86), Expect = 0.001
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
++ L + G VLDIG G+G ++ + A L G+ V GV+ E A R R
Sbjct: 38 LVLRLLRLLPGGLGVLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALA-----RAR 91
Query: 66 PDLLNDGRLHLRCRDGRTGLLH---QAPFDAIYLSTYVPEIPYSILLQ-----LKPGGRL 117
+ G + D G+L A FD + + +P + L+ LKPGGRL
Sbjct: 92 AEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRL 151
Query: 118 VCGV 121
V
Sbjct: 152 VLSD 155
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 37.9 bits (89), Expect = 0.002
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH----MRE 52
I+ G+KVL +G+ SG +++VG G V+ VE RE
Sbjct: 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRE 113
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 37.2 bits (87), Expect = 0.004
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 3 QARIIELLEPKI--QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
Q ++L+ K+ + G +LDIG G G ++ AE G V GV EQ A +
Sbjct: 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEK- 113
Query: 61 VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94
RI L D + +R +D R + PFD I
Sbjct: 114 --RIAARGLED-NVEVRLQDYRD---FEEPFDRI 141
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 35.6 bits (83), Expect = 0.007
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
++G +VL++G+GSG ++ V A+ +V GV+
Sbjct: 20 VDKKGDRVLEVGTGSGIVAIVAAK---NGKKVVGVD 52
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 35.3 bits (81), Expect = 0.015
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDA 57
G +VLD+ GSG ++ + +E VG G+V G++ EQ A
Sbjct: 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVA 114
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 35.0 bits (81), Expect = 0.022
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV 47
+E LE +++G VLD+G GSG ++ A+L G +V GV
Sbjct: 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKL-G-AKKVVGV 191
>gnl|CDD|220095 pfam09037, Sulphotransf, Stf0 sulphotransferase. Members of this
family are essential for the biosynthesis of
sulpholipid-1 in prokaryotes. They adopt a structure
that belongs to the sulphotransferase superfamily,
consisting of a single domain with a core four-stranded
parallel beta-sheet flanked by alpha-helices.
Length = 245
Score = 33.9 bits (78), Expect = 0.043
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 38 VGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH 87
G+T VFG++ M Q E + + P DG + GRT +H
Sbjct: 68 RGRTPNGVFGLKLMWNQLGLLLERLAHLYPGRSGDGLRDIEAVFGRTLFIH 118
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 33.7 bits (78), Expect = 0.044
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 29/135 (21%)
Query: 5 RIIELLEPK---IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE--HMREQCEDAWE 59
+++EL E K + G V+D+G+ G S V A+ +G G++ V+ M
Sbjct: 32 KLLELNE-KFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----KPIP 85
Query: 60 TVMRIRPDLLNDGRLH-LRCRDGR--------------TGLLHQAPFDAIYLSTYVPEIP 104
V+ ++ D+ ++ L L G +G ++YL E
Sbjct: 86 GVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEF- 144
Query: 105 YSILLQLKPGGRLVC 119
L LKPGG V
Sbjct: 145 --ALEVLKPGGSFVA 157
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 33.3 bits (77), Expect = 0.048
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
+I+ + G VL+IG G G ++ EL+ + RV +E
Sbjct: 4 KIVRAANL--RPGDTVLEIGPGKGALT---EELLERAKRVTAIE 42
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the
immunosuppressant FK506 in Streptomyces strain MA6548.
Length = 144
Score = 33.1 bits (76), Expect = 0.049
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 20 VLDIGSGSGFMSCVFAELVGKTGRVFGVE---HMREQCE 55
V+D+G+ G S FA + GRV E E E
Sbjct: 2 VIDVGANIGDFSLYFARKGAE-GRVIAFEPLPDAYEILE 39
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 33.6 bits (77), Expect = 0.049
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
I+ G+KVL +G+ SG ++LVG G V+ VE
Sbjct: 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 32.0 bits (73), Expect = 0.051
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 21 LDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD 80
LDIG G+G + E GV+ E A E + + R+ L D
Sbjct: 1 LDIGCGTGTLLRALLEA-LPGLEYTGVDISPAALEAAAERLAALGLLDAV--RVRLDVLD 57
Query: 81 GRTGLLHQAPFDAIYLST---YVPEIPYSILLQ----LKPGGRL 117
L FD + S ++ + ++L LKPGG L
Sbjct: 58 --AIDLDPGSFDVVVASNVLHHLADPR-AVLRNLRRLLKPGGVL 98
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 33.9 bits (78), Expect = 0.056
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
QA LL P Q G+ VLD+ + G S AEL+ G++ V+ ++ E +
Sbjct: 239 QALACLLLNP--QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEK-----I 291
Query: 63 RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL 96
R L + D R+ + DAI L
Sbjct: 292 RSHASALGITIIETIEGDARS-FSPEEQPDAILL 324
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 32.8 bits (75), Expect = 0.059
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 32/124 (25%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVM 62
AR++ L P+++ G +VLDIG G+G + L+ + G V GV
Sbjct: 10 ARLLARLLPRLKPGGRVLDIGCGTG----ILLRLLRERGFDVTGV--------------- 50
Query: 63 RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE--IPYSILLQ-----LKPGG 115
D L D + +D I + V E LLQ LKPGG
Sbjct: 51 ----DPSPAAVLIFSLFDAPDPAVLAGKYDLI-TAFEVLEHLPDPPALLQQLRELLKPGG 105
Query: 116 RLVC 119
L+
Sbjct: 106 VLLI 109
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 33.0 bits (76), Expect = 0.072
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 31/114 (27%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
RI++ +QE VL+IG G G ++ A+ + + I
Sbjct: 20 RIVDKAN--LQESDTVLEIGPGKGALTTELAKRAKQV------------------VAIEI 59
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTY-------VPEIPYSILLQL 111
P L + L ++HQ D + S V IPY+I +
Sbjct: 60 DPRLAKRLQEKLA-LHPNVEVVHQ---DFLKFSFPKDDPFLVVGNIPYNITTPI 109
>gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed.
Length = 187
Score = 32.4 bits (75), Expect = 0.087
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 12 PKIQEGAKVLDIGSGSGF----MSCVFAEL 37
P + G +VLD+GSG+GF ++ EL
Sbjct: 41 PYLPGGERVLDVGSGAGFPGIPLAIARPEL 70
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 32.6 bits (75), Expect = 0.11
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV 47
+E LE ++ G VLD+G GSG ++ + A +G +V GV
Sbjct: 151 LEALESLVKPGETVLDVGCGSGILA-IAALKLG-AKKVVGV 189
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 31.7 bits (72), Expect = 0.17
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
I+ G VLD+G+ G S V E VG GRV V+
Sbjct: 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVD 64
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 31.3 bits (71), Expect = 0.30
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGV 47
GA V+D+ G G+ + +F+ VG G+V+
Sbjct: 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 29.5 bits (67), Expect = 0.41
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 21 LDIGSGSGFMSCVFAELV--GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC 78
++IG SG + A+ + GR++ ++ E +R L R+ L
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDP-----WPGAEAGANLRKAGL-ADRVRLLR 54
Query: 79 RDGRTGL--LHQAPFDAIYL-STYVPEIPYSILL----QLKPGGRLVC 119
D L L D +++ + E + L L PGG +V
Sbjct: 55 GDSLEALARLPDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGIIVF 102
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 30.1 bits (69), Expect = 0.60
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 7 IELLEPKIQEGAKVLDIGSGSG 28
+E LE + G VLD+G GSG
Sbjct: 110 LEALEKLVLPGKTVLDVGCGSG 131
>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 30.0 bits (68), Expect = 0.74
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGF 29
+ LL + +VLDIGSG+GF
Sbjct: 57 SLVLLPYLDGKAKRVLDIGSGAGF 80
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 29.6 bits (67), Expect = 0.91
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 31/124 (25%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMS----CVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
+ LE + ++D+G+G+G +S F L +V +E DA
Sbjct: 24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSL-----QVTAIERN----PDAL---- 68
Query: 63 RIRPDLLNDGRLHLRCRD-----GRTGLLHQAPFDAIYLS---TYVPEIPYSILLQLKPG 114
L+ + R C + G + DAI++ + I L L PG
Sbjct: 69 ----RLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNLTAIIDWSLAHLHPG 124
Query: 115 GRLV 118
GRLV
Sbjct: 125 GRLV 128
>gnl|CDD|163650 cd07407, MPP_YHR202W_N, Saccharomyces cerevisiae YHR202W and
related proteins, N-terminal metallophosphatase domain.
YHR202W is an uncharacterized Saccharomyces cerevisiae
UshA-like protein with two domains, an N-terminal
metallophosphatase domain and a C-terminal nucleotidase
domain. The N-terminal metallophosphatase domain
belongs to a large superfamily of distantly related
metallophosphatases (MPPs) that includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 282
Score = 29.6 bits (67), Expect = 1.0
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 47 VEHMREQCEDAWETVMRIRPDLL--NDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIP 104
VEHMRE+ + + DLL + G LH DG GL +P Y + +P
Sbjct: 38 VEHMREKAD-------QKGVDLLLVDTGDLH----DG-NGLSDASPPPGSYSNPIFRMMP 85
Query: 105 YSIL 108
Y +L
Sbjct: 86 YDLL 89
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 29.5 bits (67), Expect = 1.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
+I+E I G VL+IG G G ++ L+ + RV +E
Sbjct: 20 DKIVEAAN--ISPGDNVLEIGPGLGALT---EPLLERAARVTAIE 59
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA
in bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 29.5 bits (67), Expect = 1.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
+I+E EG VL+IG G G ++ L+ + +V +E
Sbjct: 20 KIVEAANV--LEGDVVLEIGPGLGALT---EPLLKRAKKVTAIE 58
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 29.3 bits (66), Expect = 1.4
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL 76
G +VLD+ +GSG ++ V A G G V V+ R A LL + +
Sbjct: 37 GRRVLDLCTGSGALA-VAAAAAG-AGSVTAVDISRRAVRSARLNA------LLA--GVDV 86
Query: 77 RCRDGR-TGLLHQAPFDAIYLST--YVPEIP 104
R G + PFD + +S YVP P
Sbjct: 87 DVRRGDWARAVEFRPFDVV-VSNPPYVPAPP 116
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase
inhibitor.
Length = 572
Score = 29.6 bits (66), Expect = 1.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 115 GRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINP 155
G L +GK K+Y TV + +G HF I EN P
Sbjct: 325 GSLNFYIGKVKTYLTATV---AINGDHFTAKNIGFENTAGP 362
>gnl|CDD|224250 COG1331, COG1331, Highly conserved protein containing a thioredoxin
domain [Posttranslational modification, protein
turnover, chaperones].
Length = 667
Score = 29.3 bits (66), Expect = 1.6
Identities = 20/76 (26%), Positives = 24/76 (31%), Gaps = 26/76 (34%)
Query: 40 KTGRVFGVE---HMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-------------- 82
+ GRV G E+ D D L RL R R G
Sbjct: 422 EAGRVLGDPEYLEAAERAADFIL-------DNLYVDRLLRRYRGGEAAVAGLLEDYAFLI 474
Query: 83 TGL--LHQAPFDAIYL 96
GL L++A D YL
Sbjct: 475 LGLLALYEATGDLAYL 490
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the
UbiE enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a
wide distribution of bacteria and eukaryotes, but no
archaea. An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC
2.1.1.17) from Rhodobacter sphaeroides. Note that a
number of non-orthologous genes which are members of
pfam03737 have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 28.8 bits (65), Expect = 1.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV 47
R ++L+ +G KVLD+ G+G ++ A+ G+V GV
Sbjct: 30 RAVKLIGV--FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGV 70
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase
C as well as other methyltransferases .
Length = 170
Score = 28.3 bits (64), Expect = 2.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 17 GAKVLDIGSGSGFMSCVFAELVGK 40
G KVLD+G G G + A+
Sbjct: 32 GGKVLDLGCGYGVLGAALAKRSPD 55
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 28.8 bits (65), Expect = 2.0
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 18/102 (17%)
Query: 5 RIIELLEPKIQEGAK-VLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
++E + + K +LD+G+GSG ++ A G V V + DA R
Sbjct: 98 LLVEAALALLLQLDKRILDLGTGSGAIAIALA-KEGPDAEVIAV----DISPDALALA-R 151
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAP--FDAI-----YLST 98
+ R+ + D L FD I Y+
Sbjct: 152 ENAERNGLVRVLVVQSD----LFEPLRGKFDLIVSNPPYIPA 189
>gnl|CDD|238870 cd01832, SGNH_hydrolase_like_1, Members of the SGNH-hydrolase
superfamily, a diverse family of lipases and esterases.
The tertiary fold of the enzyme is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; its active site
closely resembles the Ser-His-Asp(Glu) triad from other
serine hydrolases, but may lack the carboxlic acid.
Myxobacterial members of this subfamily have been
reported to be involved in adventurous gliding motility.
Length = 185
Score = 28.4 bits (64), Expect = 2.1
Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 18/88 (20%)
Query: 4 ARIIELLEPKIQEGAKVL-----DIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCE--- 55
A + E + GA+V+ D F V + +R
Sbjct: 92 ADLEEAVRRLRAAGARVVVFTIPDPAVLE-----PFRRRVRARLAAY-NAVIRAVAARYG 145
Query: 56 ----DAWETVMRIRPDLLNDGRLHLRCR 79
D WE P L RLH
Sbjct: 146 AVHVDLWEHPEFADPRLWASDRLHPSAA 173
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 28.6 bits (64), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMS 31
+E LE + V+D+G GSG +S
Sbjct: 150 LEWLEDLDLKDKNVIDVGCGSGILS 174
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of
pimeloyl-CoA (although attribution of this annotation
is not traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 28.4 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 5 RIIELLEPK-IQEGAKVLDIGSGSGFMS 31
R++ LL+ K I A VLDIG G+G+++
Sbjct: 22 RLLALLKEKGIFIPASVLDIGCGTGYLT 49
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 28.2 bits (64), Expect = 2.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 9 LLEPKIQEGAKVLDIGSGSG 28
L ++E +VLD+G+GSG
Sbjct: 101 LEALLLKEPLRVLDLGTGSG 120
>gnl|CDD|188409 TIGR03894, chp_P_marinus_1, conserved hypothetical protein,
TIGR03894 family. This protein family is restricted to
the Prochlorococcus and Synechococcus lineages of the
Cyanobacteria, and is sporadic in those lineages.
Members average 100 amino acids in length, including a
30-residue, highly polar, low complexity region
sandwiched between an N-terminal region of about 60
residues and a C-terminal [KR]VVR[KR]RS motif, both
well-conserved. The function is unknown [Hypothetical
proteins, Conserved].
Length = 95
Score = 27.1 bits (60), Expect = 2.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 48 EHMREQCEDAWETVMRIRPDLLNDGRLHL 76
E ++E + W TV ++RP L R L
Sbjct: 4 ELLKEVALELWNTVKKLRPGLPKAPRAQL 32
>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase
GidB. GidB (glucose-inhibited division protein B)
appears to be present and in a single copy in nearly
all complete eubacterial genomes. It is missing only
from some obligate intracellular species of various
lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma,
Buchnera, etc.). GidB shows a methytransferase fold in
its the crystal structure, and acts as a
7-methylguanosine (m(7)G) methyltransferase, apparently
specific to 16S rRNA [Protein synthesis, tRNA and rRNA
base modification].
Length = 181
Score = 28.0 bits (63), Expect = 3.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 16 EGAKVLDIGSGSGFMSCVFA 35
+G +V+DIGSG+GF A
Sbjct: 42 DGKRVIDIGSGAGFPGIPLA 61
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 28.0 bits (63), Expect = 3.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 16 EGAKVLDIGSGSGFMSCVFAELVGKTG 42
G KVLD+G G G + V A+ +
Sbjct: 158 LGGKVLDLGCGYGVLGLVLAKKSPQAK 184
>gnl|CDD|219896 pfam08547, CIA30, Complex I intermediate-associated protein 30
(CIA30). This protein is associated with mitochondrial
Complex I intermediate-associated protein 30 (CIA30) in
human and mouse. The family is also present in
Schizosaccharomyces pombe which does not contain the
NADH dehydrogenase component of complex I, or many of
the other essential subunits. This means it is possible
that this family of protein may not be directly involved
in oxidative phosphorylation.
Length = 156
Score = 27.6 bits (62), Expect = 3.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 61 VMRIRPDLLNDGR---LHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKP 113
+R++ DGR +L+ D GL +QA FD +IP+S KP
Sbjct: 71 ELRVK----GDGRTYKFNLKTEDEFDGLSYQADFDTKPGEWQTVKIPFS---DFKP 119
>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD). These
alcohol dehydrogenases are related to the cinnamyl
alcohol dehydrogenases (CAD), members of the medium
chain dehydrogenase/reductase family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Cinnamyl alcohol dehydrogenases
(CAD) reduce cinnamaldehydes to cinnamyl alcohols in the
last step of monolignal metabolism in plant cells walls.
CAD binds 2 zinc ions and is NADPH- dependent. CAD
family members are also found in non-plant species, e.g.
in yeast where they have an aldehyde reductase activity.
The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 329
Score = 27.5 bits (62), Expect = 5.2
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVI 133
P DA + V + + L +K GGR+V M+ I
Sbjct: 224 EPLDAAIIFAPVGALVPAALRAVKKGGRVVLAG------IHMSDI 262
>gnl|CDD|222596 pfam14213, DUF4325, Domain of unknown function (DUF4325). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria, archaea,
eukaryotes and viruses. Proteins in this family are
typically between 99 and 341 amino acids in length.
Length = 74
Score = 26.0 bits (58), Expect = 5.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 5 RIIELLEPKIQEGAKV-LD---IGS-GSGFMSCVFAELVGKTGR 43
++ + +E ++EG KV LD + S S F+ F L K G
Sbjct: 5 KLRDRIEKALKEGKKVVLDFEGVESITSSFLDEAFGVLYKKHGE 48
>gnl|CDD|219427 pfam07490, Tir_receptor_N, Translocated intimin receptor (Tir)
N-terminus. Intimin and its translocated intimin
receptor (Tir) are bacterial proteins that mediate
adhesion between mammalian cells and attaching and
effacing (A/E) pathogens. A unique and essential feature
of A/E bacterial pathogens is the formation of
actin-rich pedestals beneath the intimately adherent
bacteria and localised destruction of the intestinal
brush border. The bacterial outer membrane adhesin,
intimin, is necessary for the production of the A/E
lesion and diarrhoea. The A/E bacteria translocate their
own receptor for intimin, Tir, into the membrane of
mammalian cells using the type III secretion system. The
translocated Tir triggers additional host signalling
events and actin nucleation, which are essential for
lesion formation. This family represents the Tir
N-terminal domain which is involved in Tir stability and
Tir secretion.
Length = 269
Score = 27.2 bits (60), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSG 28
+ RI++ LEPK G + D S SG
Sbjct: 177 RQRILDKLEPKDTGGRQAKDRTSNSG 202
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This
family consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation
of homoserine to yield an acyl-L-homoserine. This
reaction is catalyzed by the products of the metXW
genes and is equivalent to the first step in
enterobacteria, gram-positive bacteria and fungi,
except that in these microorganisms the reaction is
catalyzed by a single polypeptide (the product of the
metA gene in Escherichia coli and the met5 gene product
in Neurospora crassa). In Pseudomonas putida, as in
gram-positive bacteria and certain fungi, the second
and third steps are a direct sulfhydrylation that
converts the O-acyl-L-homoserine into homocysteine and
further methylation to yield methionine. The latter
reaction can be mediated by either of the two
methionine synthetases present in the cells.
Length = 193
Score = 27.0 bits (60), Expect = 7.1
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
I L+ P G++VLD+G G G + + E GR G+E
Sbjct: 7 IARLIPP----GSRVLDLGCGDGSLLYLLQEEKQVDGR--GIE 43
>gnl|CDD|224071 COG1149, COG1149, MinD superfamily P-loop ATPase containing an
inserted ferredoxin domain [Energy production and
conversion].
Length = 284
Score = 26.9 bits (60), Expect = 7.6
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 47 VEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIP 104
VEH T + I L D + C + +L + P+D YV P
Sbjct: 210 VEHFGI------PTGIVINRYNLGDSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEP 261
>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase;
Reviewed.
Length = 364
Score = 26.8 bits (60), Expect = 8.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 41 TGRVFGVEHMRE 52
TGRV GV+H+R+
Sbjct: 161 TGRVLGVDHLRK 172
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 26.7 bits (60), Expect = 9.6
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 8 ELLEPKIQ--EGAKVLDIGSGSGF 29
+ + P + +G VLD+G G+G+
Sbjct: 112 DRVLPHLSPLKGRTVLDVGCGNGY 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,245,501
Number of extensions: 1059118
Number of successful extensions: 1112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 87
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)