RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14962
(216 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 161 bits (411), Expect = 3e-50
Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A +ELL ++ EGAK LD+GSGSG ++ FA +VG TG+V G++H++E +D+ V +
Sbjct: 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
P LL+ GR+ L DGR G +AP+DAI++ P +P +++ QLKPGGRL+ VG
Sbjct: 125 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 184
Query: 124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
+ + D+ +DG+ + + ++ PL + ++Q W
Sbjct: 185 AGGNQMLEQYDKLQDGS-IKMKPLMGVIYV-PLTDKEKQWSRW 225
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 150 bits (382), Expect = 6e-46
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-----RVFGVEHMREQCEDAW 58
A +E L ++ GA++LD+GSGSG+++ F + G R+ G+EH E +
Sbjct: 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK 131
Query: 59 ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLV 118
+ +L+ G+L + DGR G AP++AI++ P+ P ++ QL GGRL+
Sbjct: 132 ANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLI 191
Query: 119 CGVGKSKSYHRMTVIDRSEDGT 140
VG M D+ +G
Sbjct: 192 VPVGPDGGSQYMQQYDKDANGK 213
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 139 bits (353), Expect = 1e-41
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
+ ELL+ K G KVL+IG+G G+ + V AE+VG+ G V +E + E E A
Sbjct: 67 GMMCELLDLK--PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKA-----E 119
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
L + + DG G AP+D IY + P+IP ++ QLK GG+L+ VG+
Sbjct: 120 RTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR 179
Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
R+ + ++ D +
Sbjct: 180 YL--QRLVLAEKRGDEIIIKDCG 200
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 137 bits (347), Expect = 1e-40
Identities = 30/151 (19%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAE----LVGKTGRVFGVEHMREQCEDAWE 59
A ++ L ++ G++ +D+GSGSG+++ A L K V G+E +++ + E
Sbjct: 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127
Query: 60 TVMRIRPDLLNDGRLHLRCRD----GRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGG 115
+ R +P+LL + ++ FDAI++ E+P ++ L G
Sbjct: 128 NIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENG 187
Query: 116 RLVCGVGKSKSYHRMTVIDRSEDGTHFQKYE 146
+L+ + + + + I + +
Sbjct: 188 KLIIPIEEDYT-QVLYEITKKNGKIIKDRLF 217
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 135 bits (342), Expect = 9e-40
Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A ++E+ K G +L++G+GSG+ + + +E+V V+ +E + E E A + R
Sbjct: 81 AIMLEIANLK--PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER 136
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
+H+ DG G +AP+D I ++ P+IP ++ QLK GG+L+ VG
Sbjct: 137 -----AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGS 191
Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
+ + + +++DG + +
Sbjct: 192 YHLWQELLEVRKTKDGIKIKNHG 214
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 128 bits (325), Expect = 3e-37
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 13/143 (9%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
+++ L+ +G KVL+IG+G G+ + + AE+V +V VE + A
Sbjct: 60 IFMLDELDLH--KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYA------ 108
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
L + L DG G + P+D + + P + QLK GG ++ +G
Sbjct: 109 -SKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGV 167
Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
+ ++ + + + +
Sbjct: 168 GRV-QKLYKVIKKGNSPSLENLG 189
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 126 bits (319), Expect = 1e-35
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
A +E + +G +VL+IG G+G+ + V + +VG+ G V VE+ R+ CE A
Sbjct: 64 MALFMEWVGL--DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIA----- 116
Query: 63 RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
+ + L + C DG G+ +P+D I+++ V E+P + QLK GGR++ +
Sbjct: 117 KRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPIN 176
Query: 123 KSKSYHRMTVIDRSEDGT 140
S + + + +D
Sbjct: 177 LKLSRRQPAFLFKKKDPY 194
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 123 bits (310), Expect = 3e-35
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
AR+ ELLE ++VL+IG+GSG+ + + A LV V VE ++ A R
Sbjct: 67 ARMTELLELT--PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQA-----R 116
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
R L+ + R DG G +APFDAI ++ PEIP +++ QL GG LV VG+
Sbjct: 117 RRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE 176
Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
+ + R E
Sbjct: 177 EHQ--YLKRVRRRGGEFIIDTVE 197
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 68.5 bits (167), Expect = 3e-14
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 7/145 (4%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
++ LL+ G +VL+ G+GSG ++ A VG+ G V E A V
Sbjct: 88 MVTLLDL--APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNV---- 141
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVGKS 124
+ L +A +D + L P ++ L LKP LV +
Sbjct: 142 RAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI 201
Query: 125 KSYHRMTVIDRSEDGTHFQKYEISL 149
+ + + E+
Sbjct: 202 TQVLELVRAAEAHPFRLERVLEVGW 226
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 67.3 bits (164), Expect = 9e-14
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 8/145 (5%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
I +L+ ++EG +++D G GSG M V A VG +G+VF E E + A + +
Sbjct: 104 IAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG 161
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVGKS 124
R+ ++ RD G + DA++L P LK GGR +
Sbjct: 162 ----LIERVTIKVRDISEG-FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTT 216
Query: 125 KSYHRMTVIDRSEDGTHFQKYEISL 149
+ + +E
Sbjct: 217 NQVQETLKKLQELPFIRIEVWESLF 241
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 63.9 bits (156), Expect = 9e-13
Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
++++ ++EG VLD+G+G+GF +++VG+ G+V+ ++ E
Sbjct: 28 KVLKEF--GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVN-----YAWE 80
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY------SILLQLKPGGRLV 118
+ + L + + + L D I+++ E+ + KP L
Sbjct: 81 KVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLA 140
Query: 119 C 119
Sbjct: 141 I 141
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 63.8 bits (155), Expect = 1e-12
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 10/116 (8%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
I L + + +VL+ G+GSG + V +E+ G+ VE + + +
Sbjct: 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLG 139
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVC 119
+ + D + + + F A ++ P + L G +
Sbjct: 140 K-------NVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGF 188
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 61.5 bits (149), Expect = 5e-12
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 16/126 (12%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
+ ++ ++EG V+D G+G + A LVG+ GRVFG + + + + + +
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-- 71
Query: 68 LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYS--------------ILLQLKP 113
L++ L + ++ Y+P +S + L
Sbjct: 72 LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVT 131
Query: 114 GGRLVC 119
GG +
Sbjct: 132 GGIITV 137
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 61.6 bits (149), Expect = 9e-12
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
A I+ I G +++ G GSG ++ A +VG GRV E + + AWE +
Sbjct: 81 DAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI 138
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVC 119
D R+ ++ +D G + + D + L P + LKPGG V
Sbjct: 139 KW----AGFDDRVTIKLKDIYEG-IEEENVDHVILDLPQPERVVEHAAKALKPGGFFVA 192
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 61.6 bits (149), Expect = 1e-11
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 13/131 (9%)
Query: 1 MQQARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
Q A + + E +++ G K+L+IG G G +S V A+ VG +G V G++
Sbjct: 27 RQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPL- 85
Query: 60 TVMRIRPDLLNDG---RLHLRCRDGRTGLLHQAP---FDAIYLST---YV--PEIPYSIL 108
T+ + LL RL + + L FD + L+ Y +
Sbjct: 86 TLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLF 145
Query: 109 LQLKPGGRLVC 119
+ V
Sbjct: 146 KNMAAVCDHVD 156
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 61.4 bits (148), Expect = 2e-11
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
I+ +++ G VL+ GSGSG MS ++ VG GRV E ++ + A + R
Sbjct: 97 ILSMMDI--NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 154
Query: 66 P--------DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILL-QLKPGGR 116
+ ++ + G T + FDA+ L P + + LK GG
Sbjct: 155 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 214
Query: 117 LVC 119
Sbjct: 215 CAV 217
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 57.5 bits (139), Expect = 1e-10
Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A I L PK + DIG GSG + + E E+ E +
Sbjct: 15 ALAISALAPK--PHETLWDIGGGSGSI-AIEWLRSTPQTTAVCFEISEERRERILSNAIN 71
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAP-FDAIYL--STYVPEIPYSILLQLKPGGRLV 118
L + D I++ P + + +L GGRLV
Sbjct: 72 -----LGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLV 124
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 57.9 bits (140), Expect = 2e-10
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 23/125 (18%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A + +L +++ G ++LD+GSGSG M C +A G G++ A R
Sbjct: 26 ATLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKR---R 78
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI----------YLSTYVPEIPYSILLQLKP 113
+++ R+H D G + D + + S LKP
Sbjct: 79 AEELGVSE-RVHFIHNDAA-GYVANEKCDVAACVGATWIAGGFAGAEELLAQS----LKP 132
Query: 114 GGRLV 118
GG ++
Sbjct: 133 GGIML 137
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 57.4 bits (138), Expect = 3e-10
Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 8/147 (5%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
+ II ++ G +L++G GSG MS + G + VE + + A + +
Sbjct: 100 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-- 155
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVG 122
+ + G + D + +DA+ P I +KPG +
Sbjct: 156 --SEFYDIGNVRTSRSDIADF-ISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLP 212
Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISL 149
+ + + H + E+
Sbjct: 213 NFDQSEKTVLSLSASGMHHLETVELMK 239
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 56.2 bits (136), Expect = 4e-10
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
R + + + + +D+G G+G ++ A V RV+ ++ +A T
Sbjct: 22 RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRN----PEAISTTEMN 74
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL---STYVPEIPYSILLQLKPGGRLV 118
+ L D L D + + EI I +LKPGGR++
Sbjct: 75 LQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRII 131
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 57.4 bits (138), Expect = 5e-10
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLND-G 72
EGA VLD+G G+G + ++LVG+ G+V GV+ + Q E A + V
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 73 RLHLRCRDGRTGLLHQAP--------FDAIYLS---TYVPEIPYSILLQ----LKPGGRL 117
R ++R G L A D + + ++ + L+ GG L
Sbjct: 141 RSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTN-KLALFKEIHRVLRDGGEL 199
Query: 118 V 118
Sbjct: 200 Y 200
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 56.6 bits (136), Expect = 7e-10
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 14/120 (11%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
L+ ++ G V + G ++ G+++ E + A
Sbjct: 110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL- 168
Query: 68 LLNDGRLHLRCRDGRTGLLHQAPFDAI---YLSTYVPEIPYSILL------QLKPGGRLV 118
G++ L +D L + +D + L+ Y P+ L LKPGG LV
Sbjct: 169 ---AGQITLHRQDAWK-LDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 55.3 bits (133), Expect = 9e-10
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A + L + + + DIG+GS +S + L+ GR+F +E + + + +
Sbjct: 30 AVTLSKLRLQ--DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKK 86
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTY---VPEIPYSILLQLKPGGRLV 118
+ L GL D +++ + EI ++ +LK G +V
Sbjct: 87 -----FVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIV 139
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 55.2 bits (133), Expect = 9e-10
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A + L P+ G + DIG GSG +S + GR +E ++ E+ + +
Sbjct: 45 ALTLAALAPR--RGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDT 99
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL-STYVPEIPYSILLQLKPGGRLV 118
R+ L +A+++ + + L PG R+V
Sbjct: 100 ----YGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIV 151
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 54.5 bits (131), Expect = 2e-09
Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 31/162 (19%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWET 60
I+E + K VL+ G G+G ++ V+G+ MR ++
Sbjct: 35 EDILEDVVNK--SFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP- 88
Query: 61 VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LK 112
+ D + D I + ++ + ++ + L
Sbjct: 89 -----------KEFSITEGDFLS-FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLN 136
Query: 113 PGGRLVC--GVGKSKSYHRMTVIDRSEDGTHFQKYEISLENF 152
GG++V + + + TV + G H ++ E +
Sbjct: 137 KGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYY 178
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 54.1 bits (130), Expect = 3e-09
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
+ + + ++ + AK+ DIG G+G + A+ V G++ G++ + E E
Sbjct: 36 KAVSFI-NELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNE---NA 89
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ-----LKPGGRLV 118
D R+ D I+ + I + + LK GG +
Sbjct: 90 VKANCAD-RVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIA 147
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 53.6 bits (128), Expect = 6e-09
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 13/117 (11%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSC-VFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
E + + G + + IG G ++ + + + G RV VE + E + R
Sbjct: 113 NEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELS-----RKV 165
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVC 119
+ L +++ D + FD + ++ + +I + R++
Sbjct: 166 IEGLGVDGVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIY 220
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 52.5 bits (126), Expect = 1e-08
Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 23/126 (18%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETV 61
+ + E +LD+G+G+G +S E + V E M E ++
Sbjct: 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNR---- 87
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LKP 113
+ ++ D + +D + + ++ + L + LK
Sbjct: 88 ------FRGNLKVKYIEADYSKYDFEE-KYDMVVSALSIHHLEDEDKKELYKRSYSILKE 140
Query: 114 GGRLVC 119
G +
Sbjct: 141 SGIFIN 146
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 51.7 bits (124), Expect = 1e-08
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 31/139 (22%)
Query: 1 MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDA 57
+AR+I+ + P+ GAK+LD G G G + L + V G + + +
Sbjct: 34 YGEARLIDAMAPR---GAKILDAGCGQGRIG---GYLSKQGHDVLGTDLDPILIDYAK-- 85
Query: 58 WETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS----TYVPEIPYSILLQ--- 110
+ P+ D + + FD I + ++ E L
Sbjct: 86 -----QDFPE------ARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIH 134
Query: 111 --LKPGGRLVCGVGKSKSY 127
L GR V G G + +
Sbjct: 135 RALGADGRAVIGFGAGRGW 153
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 51.8 bits (124), Expect = 2e-08
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
+ + + + E + + DIG G+G + V A V G+V G++ + +
Sbjct: 36 KALSFI-DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNR---NA 89
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ-----LKPGGRLV 118
R L + R+ D I+ + I + L LK GG L
Sbjct: 90 RQSGLQN-RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLA 147
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 50.8 bits (122), Expect = 2e-08
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 24/121 (19%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
+ + + ++D G G+GF E K ++ ++ ++ E
Sbjct: 8 EYLPNIFEG--KKGVIVDYGCGNGFYCKYLLEFATK---LYCIDINVIALKEVKE----- 57
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY-SILLQ-----LKPGGRLV 118
+ + D I + ++ ++ LK GR++
Sbjct: 58 --------KFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI 109
Query: 119 C 119
Sbjct: 110 I 110
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 50.5 bits (120), Expect = 6e-08
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 2 QQARIIELLEP-KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
A +++ L ++EG ++L +G SG + ++++G GR++GVE D
Sbjct: 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV 121
Query: 61 VMR---IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKP 113
V I P +L D R + R D +Y PE ++ L+
Sbjct: 122 VRDRRNIFP-ILGDARFPEKYRHL------VEGVDGLYADVAQPEQAAIVVRNARFFLRD 174
Query: 114 GGRLV 118
GG ++
Sbjct: 175 GGYML 179
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 50.7 bits (121), Expect = 6e-08
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 31/122 (25%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
KI + ++D G G G++ V L+ + + G++ LL +
Sbjct: 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGID---------------SGETLLAEA 63
Query: 73 RLHLRCRDGRTGLL----HQAP----FDAIYLST---YVPEIPYSILLQ----LKPGGRL 117
R R + L + +D ++ P ++L + +K GG++
Sbjct: 64 RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTT-PETMLQKMIHSVKKGGKI 122
Query: 118 VC 119
+C
Sbjct: 123 IC 124
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 49.1 bits (118), Expect = 1e-07
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A I L + V+D+G GSG M+ E+ + V+ ++++ E +
Sbjct: 25 AVSIGKLNLN--KDDVVVDVGCGSGGMTV---EIAKRCKFVYAIDYLDGAIEVTKQ---- 75
Query: 64 IRPDLLNDGRLHLRCRDGRTG----LLHQAPFDAIYL--STYVPEIPYSILLQLKPGGRL 117
N + +++ G +L + F+ ++ + + +I +L K +
Sbjct: 76 ------NLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGTKNIEKI--IEILDKKKINHI 127
Query: 118 VC 119
V
Sbjct: 128 VA 129
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 49.0 bits (117), Expect = 2e-07
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 28/171 (16%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
I+ + ++ +VLD+G G G++ L + GV+ R + A
Sbjct: 42 QAILLAILG--RQPERVLDLGCGEGWLL---RALADRGIEAVGVDGDRTLVDAA------ 90
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIP-YSILLQ-----LKPGGRL 117
R + L + + +D I + + LL L PGG L
Sbjct: 91 -RAAGAGEVHLASYAQLAEAKVPVGKDYDLIC-ANFALLHQDIIELLSAMRTLLVPGGAL 148
Query: 118 VCGVG---------KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA 159
V + + + D Y +L +++N L A
Sbjct: 149 VIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMA 199
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 49.4 bits (118), Expect = 2e-07
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 28/136 (20%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWET 60
+++LL P Q G +LD+G G+G ++ ++ V G M E+ +
Sbjct: 47 EDLLQLLNP--QPGEFILDLGCGTGQLT---EKIAQSGAEVLGTDNAATMIEKARQNYP- 100
Query: 61 VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPY---SILLQLKPG 114
LH D R P DA++ + +V E SI LK G
Sbjct: 101 ------------HLHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSG 147
Query: 115 GRLVCGVGKSKSYHRM 130
GR V G + +
Sbjct: 148 GRFVAEFGGKGNIKYI 163
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 48.9 bits (116), Expect = 2e-07
Identities = 19/122 (15%), Positives = 31/122 (25%), Gaps = 23/122 (18%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWE 59
+ L + +VL+ G G G + F R + +
Sbjct: 35 ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARA--- 88
Query: 60 TVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APFDAIYLSTYVPEIPYSILLQ-LKPGGR 116
N + +G+ L APF I S P L + P
Sbjct: 89 ----------NAPHADVYEWNGKGELPAGLGAPFGLIV-SRRGPTSVILRLPELAAPDAH 137
Query: 117 LV 118
+
Sbjct: 138 FL 139
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 49.0 bits (117), Expect = 2e-07
Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 22/128 (17%)
Query: 3 QARIIELLEPK--IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
R+ + + ++ G +VLD+G G G + A RV G+ R Q A
Sbjct: 46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANA- 102
Query: 61 VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY----------LSTYVPEIPYSILLQ 110
R L + R+ D A FDA++ + E+ +
Sbjct: 103 --RATAAGLAN-RVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREM-ARV--- 155
Query: 111 LKPGGRLV 118
L+PGG +
Sbjct: 156 LRPGGTVA 163
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 48.7 bits (116), Expect = 3e-07
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 14/124 (11%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWET 60
Q +++ L + ++D G G G + + G RV GV Q +
Sbjct: 104 QAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHR---RFGSRVEGVTLSAAQADFGNR- 158
Query: 61 VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ-----LKPGG 115
R R ++D + R + + A + + + L LK GG
Sbjct: 159 --RARELRIDD-HVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGG 215
Query: 116 RLVC 119
R V
Sbjct: 216 RYVT 219
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 47.9 bits (114), Expect = 4e-07
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 27/137 (19%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETV 61
++ + ++ GAK+L++G G+G+ + G V + E +A
Sbjct: 30 RSATLTKFLGELPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEASR-- 83
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIYLSTYVPEIPYSILLQ--------LK 112
RL R L +DA++ + +P L LK
Sbjct: 84 -----------RLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALK 132
Query: 113 PGGRLVCGVGKSKSYHR 129
PGG + R
Sbjct: 133 PGGLFYASYKSGEGEGR 149
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 47.2 bits (112), Expect = 5e-07
Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 20/125 (16%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
+ L + + + V+D G+G + A L G + +V+ + + + R+
Sbjct: 14 DFLAEVLDDESIVVDATMGNGNDT---AFLAGLSKKVYAFDVQEQALGKTSQ---RLSDL 67
Query: 68 LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY--------------SILLQLKP 113
+ + L L + + + AI+ Y+P IL +L+
Sbjct: 68 GIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV 127
Query: 114 GGRLV 118
GGRL
Sbjct: 128 GGRLA 132
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 47.5 bits (113), Expect = 7e-07
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMR 63
+I+ +E + E +KVLDIGSG G + K G G++ A E V
Sbjct: 46 KILSDIE--LNENSKVLDIGSGLGGGCM---YINEKYGAHTHGIDICSNIVNMANERVSG 100
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY--LSTYVPEIP-YSILLQ-----LKPGG 115
+ ++ D T + FD IY + + + L Q LKP G
Sbjct: 101 -------NNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTG 153
Query: 116 RLV 118
L+
Sbjct: 154 TLL 156
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 47.1 bits (112), Expect = 1e-06
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 36/132 (27%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A+++++ K +VLD+ +G G ++ FA V +V +
Sbjct: 27 AKLMQIAALK--GNEEVLDVATGGGHVANAFAPFV---KKVVAFD--------------- 66
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAP----------FDAIYLST---YVPEIP---YSI 107
+ D+L R + + Q F + + P
Sbjct: 67 LTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEA 126
Query: 108 LLQLKPGGRLVC 119
LK GG+L+
Sbjct: 127 YRVLKKGGQLLL 138
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 47.2 bits (112), Expect = 1e-06
Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 27/133 (20%)
Query: 2 QQARIIE---LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAW 58
+QA +E + GAKVL+ G G G + + A+ + ++ E E A
Sbjct: 20 EQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKA- 77
Query: 59 ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP-----FDAIYLST---YVPEIPYSILLQ 110
R + + + + P FD I++ ++ P L
Sbjct: 78 ----RENTEKNGIKNVKFLQAN-----IFSLPFEDSSFDHIFVCFVLEHLQS-PEEALKS 127
Query: 111 ----LKPGGRLVC 119
LKPGG +
Sbjct: 128 LKKVLKPGGTITV 140
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 46.8 bits (111), Expect = 1e-06
Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 20/154 (12%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
++ + + +GA++LD+GS ++ ++ G E + + A + V
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHG- 69
Query: 67 DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSIL----LQLKPGGRLV-CGV 121
++ +R +G + D I + + IL +L+ LV
Sbjct: 70 ---LTSKIDVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN 126
Query: 122 GKSKSY------HRMTVIDRS--EDGTHFQKYEI 147
+ + ++ + YEI
Sbjct: 127 NREDDLRKWLAANDFEIVAEDILTENDKR--YEI 158
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 46.8 bits (111), Expect = 1e-06
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 12/113 (10%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
+Q AK LD+G+G G + G + + Q + E L D
Sbjct: 79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEE---YNNQAGLAD- 132
Query: 73 RLHLRCRDGRTGLLHQAPFDAIY---LSTYVPEIP--YSILLQ-LKPGGRLVC 119
+ ++ +D I+ + P+ + + LKP G +
Sbjct: 133 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI 185
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 46.1 bits (109), Expect = 2e-06
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 19/196 (9%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
+ + LL +++ KVLD+ G G S + + + V GV+ + A E
Sbjct: 24 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKAREYA 80
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ--------LKP 113
+ + D R FD + + L Q LKP
Sbjct: 81 KSRESN------VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP 134
Query: 114 GGRLVCGVG-KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPL-INADEQNDNWLYQQS 171
G+ + + R+ K E + +++ + +
Sbjct: 135 SGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVW 194
Query: 172 RSEDGTHFQKYEISLE 187
K + E
Sbjct: 195 GKTGVELLAKLYFTKE 210
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 45.6 bits (108), Expect = 3e-06
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 9/116 (7%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
+EL+ + +GA +LD+GS ++ E G+ E + + A + V
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHG- 63
Query: 67 DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSIL----LQLKPGGRLV 118
++ +R +G I ++ + IL +L RL+
Sbjct: 64 ---LKEKIQVRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLI 116
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 45.2 bits (107), Expect = 3e-06
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 25/116 (21%)
Query: 17 GAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH 75
+LD+GSG+G + A L G ++ G+E E A +T +
Sbjct: 42 DGVILDVGSGTGRWTGHLASL----GHQIEGLEPATRLVELARQTH----------PSVT 87
Query: 76 LRCRDGRTGLLHQAPFDAIYLSTYV-----PEIPYSILLQ----LKPGGRLVCGVG 122
+ + L+ Y P L+ ++ GG L+
Sbjct: 88 FHHGTITDLSDSPKRWAGL-LAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF 142
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 45.4 bits (107), Expect = 4e-06
Identities = 17/146 (11%), Positives = 31/146 (21%), Gaps = 32/146 (21%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAW 58
+ E ++D G+G + ++ RV G+ + E
Sbjct: 42 AVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKE- 97
Query: 59 ETVMRIRPDLLNDGRLHLRCRDGRT----GLLHQAPFDAIYLSTYV-----PEIPYSILL 109
+ R DG +H DA E +
Sbjct: 98 ----------NTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQ 147
Query: 110 Q----LKPGGRLV--CGVGKSKSYHR 129
L G + +
Sbjct: 148 SLRILLGKQGAMYLIELGTGCIDFFN 173
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 44.9 bits (106), Expect = 4e-06
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 22/123 (17%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
+E L VL++ SG+G+ + + L RV ++ E +A
Sbjct: 35 PAALERL-RAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEA-----G 85
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LKPGG 115
+ R +D +DA++ + +VP+ + + + PGG
Sbjct: 86 RH----GLDNVEFRQQDLFD-WTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGG 140
Query: 116 RLV 118
+
Sbjct: 141 VVE 143
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 45.2 bits (107), Expect = 4e-06
Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 36/132 (27%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
+I+ E + +VLDIG+G+G + F+ V GV+
Sbjct: 11 GLMIKTAEC--RAEHRVLDIGAGAGHTALAFSPYV---QECIGVD--------------- 50
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAP----------FDAIYLST---YVPEIP---YSI 107
+++ + + Q FD I + ++ +
Sbjct: 51 ATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 110
Query: 108 LLQLKPGGRLVC 119
LK GR +
Sbjct: 111 ARVLKQDGRFLL 122
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 44.9 bits (106), Expect = 4e-06
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 11/121 (9%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
++ L K +V+D+G G G + + + ++ GV+ E A E + R+R
Sbjct: 21 VVAAL--KQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDRLR 77
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST--------YVPEIPYSILLQLKPGGRL 117
RL L +DA + + + +P +
Sbjct: 78 LPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137
Query: 118 V 118
V
Sbjct: 138 V 138
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 44.9 bits (106), Expect = 5e-06
Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 34/131 (25%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEH---MREQCEDAWET 60
+ P + +VLDIG G G F EL + G GV+ M + CE
Sbjct: 30 ARLRRYIPYFKGCRRVLDIGCGRGE----FLELCKEEGIESIGVDINEDMIKFCEG---- 81
Query: 61 VMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFDAIYLSTYV----PEIPYSILLQ---- 110
+ ++ D L L D + +S +V PE + +L
Sbjct: 82 ------------KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSK 129
Query: 111 LKPGGRLVCGV 121
+K +V
Sbjct: 130 MKYSSYIVIES 140
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 44.5 bits (105), Expect = 7e-06
Identities = 25/191 (13%), Positives = 50/191 (26%), Gaps = 55/191 (28%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV-------EHMREQCEDA 57
+ ++L VLD+G G G+ AE K +V G+ + +
Sbjct: 35 ELKKMLPD--FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSP 90
Query: 58 WETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIP---YSILLQL 111
+ + + ++ + S Y+ + + L
Sbjct: 91 ---------------VVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINL 135
Query: 112 KPGGRLVCGVG-----------------------KSKSYHRMTVIDRSEDGTHFQKYEIS 148
K G + V Y ++ G QKY +
Sbjct: 136 KSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195
Query: 149 LENFINPLINA 159
+ +I L+
Sbjct: 196 VTTYIQTLLKN 206
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 44.6 bits (104), Expect = 7e-06
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
+ +L+P+ G VLD+G G ++ A G + R+ G++ A +
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQ 88
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 44.0 bits (104), Expect = 8e-06
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 20/115 (17%)
Query: 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL 74
+ L+IG +G + +L R+ ++ M + R +
Sbjct: 50 GAVSNGLEIGCAAGAFT---EKLAPHCKRLTVIDVMP-------RAIGRACQRTKRWSHI 99
Query: 75 HLRCRDGRTGLLHQAPFDAIYLST---YVPEIPY------SILLQLKPGGRLVCG 120
D FD I ++ Y+ ++ +++ L PGG LV G
Sbjct: 100 SWAATDI-LQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFG 153
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 44.3 bits (104), Expect = 9e-06
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE----HMREQCEDAWETVMRI 64
L I++G KVL +G+ SG ++++ G+ +GVE +RE A + I
Sbjct: 69 LKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVA-QRRPNI 127
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLV 118
P LL D R + D +Y+ P+ + LK G ++
Sbjct: 128 FP-LLADARFPQSYK------SVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDML 178
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 43.9 bits (103), Expect = 1e-05
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 16/114 (14%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH----MREQCEDAWETVMRIRPDL 68
I+ GAKVL +G+ SG +++VG G V+ VE R+ A + I P +
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA-KKRTNIIP-V 131
Query: 69 LNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLV 118
+ D R + R D I+ P+ + L L+ GG V
Sbjct: 132 IEDARHPHKYRMLIA------MVDVIFADVAQPDQTRIVALNAHTFLRNGGHFV 179
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 44.4 bits (104), Expect = 1e-05
Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 14/158 (8%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
A++I+ + K+ + +D+GSG G + A +GVE + A
Sbjct: 161 LVAQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMD 217
Query: 62 MRIRPDL----LNDGRLHLRCRDGRTGLLHQAPFDA--IYLSTYV--PEIPYS---ILLQ 110
R + L D + + + I+++ + PE+ +
Sbjct: 218 REFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFAN 277
Query: 111 LKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEIS 148
+K GGR+V + R+ + S+ GT + E+S
Sbjct: 278 MKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELS 315
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 43.7 bits (103), Expect = 1e-05
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 27/131 (20%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
++ II E +++ A+VLD+G G G+ + + + GV+ + E
Sbjct: 39 SRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKE-- 93
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAP-----FDAIYLSTYVPEIP-YSILLQ----- 110
L D P F+AI + L
Sbjct: 94 ------RGEGPDLSFIKGDL-----SSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRV 142
Query: 111 LKPGGRLVCGV 121
LK G +
Sbjct: 143 LKSDGYACIAI 153
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 43.5 bits (102), Expect = 2e-05
Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 18/124 (14%)
Query: 9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL 68
+ E E ++D+G G G + A+ + ++ G + + A + +
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTA-----EVIKEG 83
Query: 69 LNDGRLHLRCRDGR--------TGLLHQAPFDAIYLSTYVPEIPYSILLQ-----LKPGG 115
D ++ + + + D I + + L+ G
Sbjct: 84 SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDG 143
Query: 116 RLVC 119
+
Sbjct: 144 TIAI 147
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 42.9 bits (101), Expect = 2e-05
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
+E + I + ++ DIGS ++ C + E + + A + V
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSG- 69
Query: 67 DLLNDGRLHLRCRDGRTGLLHQAPFDAI 94
++ +R +G + + D I
Sbjct: 70 ---LTEQIDVRKGNGLAVIEKKDAIDTI 94
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 43.1 bits (101), Expect = 3e-05
Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 25/133 (18%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGV---EHMREQCEDAWE 59
A ++ LL +VLD+ G+G S + E G V V + M +
Sbjct: 47 AWLLGLLRQH--GCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERW 100
Query: 60 TVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI--------YLSTYVPEIPY------ 105
R P + FDA+ +L +
Sbjct: 101 N-RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALK 159
Query: 106 SILLQLKPGGRLV 118
+I ++PGG LV
Sbjct: 160 NIASMVRPGGLLV 172
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 42.2 bits (99), Expect = 4e-05
Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 31/139 (22%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVE---HMREQCEDAW 58
++ P +L++GS G F + + + VE +
Sbjct: 30 HPFMVRAFTPFF-RPGNLLELGSFKGD----FTSRLQEHFNDITCVEASEEAISHAQGRL 84
Query: 59 ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPYSILLQ----- 110
+ + D +D I L+ ++ + P ++L +
Sbjct: 85 KDGITYIHSRFED-------------AQLPRRYDNIVLTHVLEHIDD-PVALLKRINDDW 130
Query: 111 LKPGGRLVCGVGKSKSYHR 129
L GGRL + + R
Sbjct: 131 LAEGGRLFLVCPNANAVSR 149
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 42.1 bits (99), Expect = 4e-05
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 29/129 (22%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
II +DIGSG G +S A+ + ++ + E A + +
Sbjct: 35 NIINRFGIT---AGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADA 89
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAP-----FDAI---YLSTYVPEIPYSILLQ-----L 111
+ R+ + D H P D I + ++ + + L
Sbjct: 90 NL----NDRIQIVQGDV-----HNIPIEDNYADLIVSRGSVFFWEDVATA--FREIYRIL 138
Query: 112 KPGGRLVCG 120
K GG+ G
Sbjct: 139 KSGGKTYIG 147
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 41.9 bits (98), Expect = 5e-05
Identities = 23/125 (18%), Positives = 33/125 (26%), Gaps = 16/125 (12%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
I+ L++ + L G G G A V G++ A ET
Sbjct: 53 TPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANET-- 107
Query: 63 RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ--------LKPG 114
D T FD I+ + I + LKP
Sbjct: 108 --YGSSPKAEYFSFVKEDVFT-WRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPD 164
Query: 115 GRLVC 119
G L+
Sbjct: 165 GELIT 169
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 41.3 bits (97), Expect = 8e-05
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 18/127 (14%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETV 61
+ ++ +QE ++LDIG GSG +S A K V G+ A
Sbjct: 19 DLYPIIHNYLQEDDEILDIGCGSGKISLELAS---KGYSVTGIDINSEAIRL---AETAA 72
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPYSIL-LQ-----LK 112
+ G+ + + + H + FD + T VP+ ++ LK
Sbjct: 73 RSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLK 132
Query: 113 PGGRLVC 119
PG L
Sbjct: 133 PGAYLYL 139
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 41.4 bits (97), Expect = 8e-05
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 25/125 (20%)
Query: 8 ELLEP-KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETVMR 63
+LL ++ D+G G G + + + G + G+ + M E+ D
Sbjct: 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSDDDMLEKAAD------- 75
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIP---YSILLQLKPGGRL 117
+ D T D +Y + +VP+ ++ QL+ GG L
Sbjct: 76 ------RLPNTNFGKADLAT-WKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVL 128
Query: 118 VCGVG 122
+
Sbjct: 129 AVQMP 133
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 40.7 bits (95), Expect = 1e-04
Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
++ +L+ KV+D+G G G + + + ++ GV+ E A + + R
Sbjct: 21 VVAVLKS--VNAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLERAKDRLKIDR 77
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LKPGGRL 117
+ R+ L + +DA + ++ E + +P +
Sbjct: 78 LPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVI 137
Query: 118 V 118
V
Sbjct: 138 V 138
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 40.1 bits (94), Expect = 2e-04
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 27/124 (21%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRP 66
LL+ +E +VLDIG SG + + G RV G+E E E A E +
Sbjct: 24 NLLKHIKKEWKEVLDIGCSSGA----LGAAIKENGTRVSGIEAFPEAAEQAKEKL----- 74
Query: 67 DLLNDGRLHLRCRDGRTGLLHQAP--FDAIYLST---YVPEIPYSILLQ----LKPGGRL 117
H+ D T + FD + ++ + P++++ + +K G +
Sbjct: 75 -------DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD-PWAVIEKVKPYIKQNGVI 126
Query: 118 VCGV 121
+ +
Sbjct: 127 LASI 130
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 40.0 bits (93), Expect = 2e-04
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH---MREQCEDAWETVMRIR 65
L I+ G VL +G SG + +++VG G++FG+E + + E I
Sbjct: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIV 125
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLV 118
P +L D R D I+ P ++ LK GG +
Sbjct: 126 P-ILGDATKPEEYRALVP------KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGM 175
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 39.9 bits (93), Expect = 3e-04
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 38/135 (28%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
+ + P E L++G G+G ++ L+ + R ++
Sbjct: 28 TAMASAVHP-KGEEPVFLELGVGTGRIA---LPLIARGYRYIALD--------------- 68
Query: 64 IRPDLLNDGRLHLRCRDGRTGLLH---------QAPFDAIYLST---YVPEIPYSILLQ- 110
+L R + D + ++ + + VP+ P L
Sbjct: 69 ADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKV--LAE 126
Query: 111 ----LKPGGRLVCGV 121
LKPGG L+ G
Sbjct: 127 AIRVLKPGGALLEGW 141
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 39.8 bits (93), Expect = 3e-04
Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 35/141 (24%)
Query: 1 MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHM----REQ 53
+ I LE ++ +VLD+G G+G S E + V V + M RE+
Sbjct: 39 LYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQE---RGFEVVLVDPSKEMLEVAREK 95
Query: 54 CEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST----YVPEIPY---S 106
+ L G F+A+ YV
Sbjct: 96 GVKNV---------VEAKAE-DLPFPSGA--------FEAVLALGDVLSYVENKDKAFSE 137
Query: 107 ILLQLKPGGRLVCGVGKSKSY 127
I L P G L+ V ++
Sbjct: 138 IRRVLVPDGLLIATVDNFYTF 158
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 39.5 bits (92), Expect = 4e-04
Identities = 28/197 (14%), Positives = 56/197 (28%), Gaps = 31/197 (15%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGV---EHMREQCEDAW 58
+ E VL++ +G G ++ F +L G V + +
Sbjct: 69 TSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRL 124
Query: 59 ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST----YVPEIPYSILLQ---- 110
R L D F + +S+ + E L
Sbjct: 125 A-----EAPADVRDRCTLVQGDMSA-FALDKRFGTVVISSGSINELDEADRRGLYASVRE 178
Query: 111 -LKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQ 169
L+PGG+ + + ++R ++ L P A+E + ++
Sbjct: 179 HLEPGGKFLLSLA-MSEAAESEPLERKQELPGRSGRRYVLHVRHLP---AEEIQEITIHP 234
Query: 170 QSRSEDG----THFQKY 182
+ D TH ++
Sbjct: 235 ADETTDPFVVCTHRRRL 251
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 39.1 bits (91), Expect = 4e-04
Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 42/131 (32%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE---HMREQCEDAWET 60
II LL +G+ + DIG+G+G S L + V+ VE MR+Q
Sbjct: 24 NAIINLLNLP--KGSVIADIGAGTGGYS---VALANQGLFVYAVEPSIVMRQQA------ 72
Query: 61 VMRIRPDL-LNDGR-LHLRCRDGRTGLLHQAPFDAIYLSTYV-----------PEIPYSI 107
+ P + G +L D D + +S E+ I
Sbjct: 73 --VVHPQVEWFTGYAENLALPDKS--------VDGV-ISILAIHHFSHLEKSFQEM-QRI 120
Query: 108 LLQLKPGGRLV 118
++ G ++
Sbjct: 121 ---IRDGTIVL 128
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 39.0 bits (91), Expect = 5e-04
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 27/122 (22%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
+ + ++IG G+G + GVE E A + + +
Sbjct: 44 CLLPEGRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGVFVL---KGTA 93
Query: 73 RLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ----LKPGGRLVCGVGKSK 125
+L +D FD + T +V + P L + LK GG L+ G+ +
Sbjct: 94 -ENLPLKDES--------FDFALMVTTICFVDD-PERALKEAYRILKKGGYLIVGIVDRE 143
Query: 126 SY 127
S+
Sbjct: 144 SF 145
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 38.9 bits (91), Expect = 5e-04
Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 32/132 (24%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGV---EHMREQCEDAWETV 61
IIE LD+ G+G ++ + V + M + E+ + +
Sbjct: 27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRS- 81
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY------------SILL 109
+ L C+D L FD I Y ++
Sbjct: 82 --------QGLKPRLACQDISN-LNINRKFDLITCCLDS--TNYIIDSDDLKKYFKAVSN 130
Query: 110 QLKPGGRLVCGV 121
LK GG + +
Sbjct: 131 HLKEGGVFIFDI 142
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 38.6 bits (90), Expect = 6e-04
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 31/125 (24%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETVMRI 64
L+ + G +L++G+G+G+ + GV E M +
Sbjct: 28 RALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVGRRRAPEATWV 82
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LKPGGR 116
R L FD + L T +V ++ L L+PGG
Sbjct: 83 RAWG-----EALPFPGES--------FDVVLLFTTLEFVEDVERV--LLEARRVLRPGGA 127
Query: 117 LVCGV 121
LV GV
Sbjct: 128 LVVGV 132
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 38.6 bits (90), Expect = 7e-04
Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 22/123 (17%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
+ +L G +++D+G G G+ E V G++ + A
Sbjct: 34 ALRAMLPE--VGGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARA----- 84
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPYSILLQ-----LKPGGR 116
D + D L Q FD Y S YV ++ L + L PGG
Sbjct: 85 ---AGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA--RLFRTVHQALSPGGH 139
Query: 117 LVC 119
V
Sbjct: 140 FVF 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 8e-04
Identities = 35/243 (14%), Positives = 67/243 (27%), Gaps = 49/243 (20%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVF--AEL---------VGKTGRVFGV--EHMRE 52
I+ + E + D+ + E+ V T R+F E
Sbjct: 21 ILSVFEDAFVDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 53 QCEDAWETVMRIRPDLLNDGRLHLRCRD-GRTGLLHQAPFDAIYLSTYVPEIPYSI---- 107
+ E V+RI L + R ++ D +Y + Y++
Sbjct: 78 MVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNVSRLQ 135
Query: 108 --------LLQLKPGGRLVC----GVGKS----KSYHRMTVIDRSEDGTHFQK--YEISL 149
LL+L+P ++ G GK+ V + + + S
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 150 ENFINPLINADEQNDNWLYQQS--------RSEDGTHFQKYEISLENFINPLINADEQND 201
E + L Q D +S R + + + + N L+ +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 202 NWL 204
Sbjct: 256 AKA 258
Score = 37.9 bits (87), Expect = 0.002
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 37/143 (25%)
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI--YLSTYVPEIPYSILLQLKPGGRLVC 119
+ ++ L N+ LH D D I YL Y YS +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF----YSHI----------- 477
Query: 120 GVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW------------L 167
+H + I+ E T F+ + F+ I D N
Sbjct: 478 ------GHH-LKNIEHPERMTLFRMVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 168 YQQSRSEDGTHFQKYEISLENFI 190
Y+ ++ +++ ++ +F+
Sbjct: 530 YKPYICDNDPKYERLVNAILDFL 552
Score = 33.7 bits (76), Expect = 0.042
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 47/162 (29%)
Query: 72 GRLHLRCRDGRTGLLH--QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHR 129
G + +D +L + F + V ++P SIL +
Sbjct: 12 GEHQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKSIL--------------SKEEIDH 53
Query: 130 MTVIDRSEDGTHF------QKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHFQKYE 183
+ + + GT K E ++ F+ N +L ++E ++
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRINYKFLMSPIKTEQ----RQPS 106
Query: 184 ISLENFI---NPLINADEQNDNWLYQQ---SRN---HVLKEW 216
+ +I + L NDN ++ + SR L++
Sbjct: 107 MMTRMYIEQRDRL-----YNDNQVFAKYNVSRLQPYLKLRQA 143
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens
str}
Length = 260
Score = 38.3 bits (89), Expect = 8e-04
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
++ D+G+G+G A + K V E +E E A ++ +
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKA-EVTLYERSQEMAEFARRSLELPDNAAFSA- 90
Query: 73 RLHLRCRD 80
R+ + D
Sbjct: 91 RIEVLEAD 98
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 38.0 bits (88), Expect = 0.001
Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 36/166 (21%)
Query: 3 QARIIELLE--PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
Q ++ L+ + VLD G+G G + +G+E Q + A
Sbjct: 8 QPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAEN- 64
Query: 61 VMRIRPDLLNDGRLHLRCRDGRTGLLHQAP-----FDAIYLSTYVPEIPYSILLQ----- 110
+ + + G + + P +Y + + + + +
Sbjct: 65 ---------FSRENNFKL-NISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEI 114
Query: 111 ---LKPGGRLVCGV--------GKSKSYHRMTVIDRSEDGTHFQKY 145
LKPGG K + + Y
Sbjct: 115 KRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSY 160
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 38.1 bits (88), Expect = 0.001
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 20/141 (14%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSG-----FMSCVFAELVGKTGRVFGVEHMREQCEDAW 58
II + + K+L IG G+G +S V A+ G VE EQ
Sbjct: 41 PGIIGRI-GDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK 99
Query: 59 ETVMRIRPDLLNDGRLHLRC------RDGRTGLLHQAPFDAIYLST---YVPEIPYSILL 109
E V + L + + + +D I++ YV +IP ++
Sbjct: 100 ELVAKTSN--LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKF 157
Query: 110 ---QLKPGGRLVCGVGKSKSY 127
L +++ V S
Sbjct: 158 FHSLLGTNAKMLIIVVSGSSG 178
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 38.7 bits (89), Expect = 0.001
Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM-RI 64
++ + + + ++D G GSG + + + GV+ + A + + ++
Sbjct: 713 ALKHI--RESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKL 770
Query: 65 RPDLLNDGRLHLRCRDGRTGLLHQAPFDAI---YLSTYVPE-----IPYSILLQLKPGGR 116
+ N L D + ++ E +L P
Sbjct: 771 NKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLL 830
Query: 117 LV 118
+V
Sbjct: 831 IV 832
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 37.8 bits (88), Expect = 0.001
Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 32/131 (24%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGV---EHMREQCEDA 57
+ + I +L+ + E + +LD+ G+G F + G+ E M
Sbjct: 26 EASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKE----FGDTAGLELSEDMLTHARK- 80
Query: 58 WETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI--------YLSTY--VPEIPYSI 107
L D R F A+ YL T + S
Sbjct: 81 ------------RLPDATLHQGDMRD-FRLGRKFSAVVSMFSSVGYLKTTEELGAAVASF 127
Query: 108 LLQLKPGGRLV 118
L+PGG +V
Sbjct: 128 AEHLEPGGVVV 138
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 37.8 bits (88), Expect = 0.001
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 35/132 (26%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHM----REQCED 56
+ + +++ G ++ DIG G+G + + A+ V GV E M +E+ +
Sbjct: 21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHY----EVTGVDLSEEMLEIAQEKAME 76
Query: 57 AWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS----TYVPEIP------YS 106
+ + +D R L P DAI + Y+ S
Sbjct: 77 T-------------NRHVDFWVQDMRE-LELPEPVDAITILCDSLNYLQTEADVKQTFDS 122
Query: 107 ILLQLKPGGRLV 118
L GG+L+
Sbjct: 123 AARLLTDGGKLL 134
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 38.2 bits (88), Expect = 0.001
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
I+EG KV+D+ G G K + +E E A + + L
Sbjct: 91 IREGTKVVDLTGGLGIDFIALM---SKASQGIYIERNDETAVAARHNIPLL---LNEGKD 144
Query: 74 LHLRCRDGRTGL--LHQAPFDAIYLST 98
+++ D + L + D IY+
Sbjct: 145 VNILTGDFKEYLPLIKTFHPDYIYVDP 171
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 37.0 bits (85), Expect = 0.002
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 17/113 (15%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH----MREQCEDAWETVMRIRPDLL 69
I+ +K+L +G+ +G A+ + G V+ +E+ MRE + E I P +L
Sbjct: 72 IKRDSKILYLGASAGTTPSHVAD-IADKGIVYAIEYAPRIMRELLDACAE-RENIIP-IL 128
Query: 70 NDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLV 118
D + D IY P + + LK GG +
Sbjct: 129 GDANKPQEYANI------VEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.002
Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 57/213 (26%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
+A L P I E + + + G S + + + + +EQ +D
Sbjct: 311 YEAYPNTSLPPSILEDS----LENNEGVPSPMLS--------ISNLT--QEQVQDYVNKT 356
Query: 62 MRIRPD-------LLNDGR---------------LHLRCRDGRTGLL-HQAPFD--AIYL 96
P L+N + L LR +GL + PF +
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 97 ST-YVPEI--PY-SILLQLKPGGRLVCG--VGKSKSYH----RMTVIDRSEDGTHFQKYE 146
S ++P + P+ S LL P L+ V + S++ ++ V D + DG+ +
Sbjct: 417 SNRFLP-VASPFHSHLL--VPASDLINKDLVKNNVSFNAKDIQIPVYD-TFDGSDLRVLS 472
Query: 147 ISLENFINPLINADEQNDNWLYQQSRSEDGTHF 179
S+ I I W + + TH
Sbjct: 473 GSISERIVDCII--RLPVKW--ETTTQFKATHI 501
Score = 28.5 bits (63), Expect = 1.9
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 9 LLEPKIQEGAKVLDI-GSGSGFMSCVFAELVG--KTGRVFGVEHMREQCEDAWETVMRIR 65
L + A+++ I G G G F EL +T V + + + + ET+ +
Sbjct: 145 LFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVL----VGDLIKFSAETLSELI 199
Query: 66 PDLLNDGRLHLRCRDGRTGLLH--QAPFDAIYLSTYVPEIPYS----ILLQL 111
L+ ++ + + L + P D YL + IP S ++QL
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTP-DKDYLLS----IPISCPLIGVIQL 246
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 37.5 bits (86), Expect = 0.002
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 16/131 (12%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
+ + + ++++G +D+GSG G A G FG E M + +
Sbjct: 230 FLSDVYQQC--QLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQY 286
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAPF--------DAIYLSTYV--PEIPYS---IL 108
++ G D I ++ ++ ++ IL
Sbjct: 287 EELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL 346
Query: 109 LQLKPGGRLVC 119
K G +++
Sbjct: 347 QTAKVGCKIIS 357
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 37.3 bits (86), Expect = 0.002
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 20/133 (15%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
E L P+ G +VLD+G+G G ++ A + V GVE + +
Sbjct: 225 ERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEA---- 277
Query: 68 LLNDGRLHLRCRDGRTGLLHQAPFDAIYL-------STYVPEIPYSILLQ----LKPGGR 116
N + D L +A FD I + ++ + + L+PGG
Sbjct: 278 --NALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGV 335
Query: 117 LVCGVGKSKSYHR 129
Y
Sbjct: 336 FFLVSNPFLKYEP 348
Score = 30.3 bits (68), Expect = 0.43
Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 28/127 (22%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
+ + +EP G + LD+ G G+ S M + + R
Sbjct: 38 LQKTVEP---FGERALDLNPGVGWGSLPLE------------GRMAVERLETS------R 76
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDA--IYLSTYVPEIPYSILLQ-----LKPGGRLV 118
L+ R +D + L L L+ GGRL
Sbjct: 77 AAFRCLTASGLQARLALPWEAAAGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLY 136
Query: 119 CGVGKSK 125
K+K
Sbjct: 137 LAGDKNK 143
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 36.8 bits (85), Expect = 0.003
Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 32/127 (25%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGV---EHMREQCEDAWETV 61
+ L+ + A +LD+ G+G A+ V G+ M
Sbjct: 40 LAALVRRHSPKAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLAIARR----- 90
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS----TYVPEIP------YSILLQL 111
+ L D R L + F A+ ++ +
Sbjct: 91 --------RNPDAVLHHGDMRDFSLGR-RFSAVTCMFSSIGHLAGQAELDAALERFAAHV 141
Query: 112 KPGGRLV 118
P G +V
Sbjct: 142 LPDGVVV 148
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 36.5 bits (84), Expect = 0.003
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 15/94 (15%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWET 60
+ LLEP+++ ++L +G G+ +S V V + + +
Sbjct: 30 SSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYA- 86
Query: 61 VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94
+ +L D R A FD +
Sbjct: 87 ---------HVPQLRWETMDVRKLDFPSASFDVV 111
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 35.8 bits (82), Expect = 0.006
Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 20/152 (13%)
Query: 9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL 68
+ ++ LD G+G G ++ + +E ++ E+A + +L
Sbjct: 86 IASLPGHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEA-------KREL 136
Query: 69 LNDGRLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPYSILLQ-----LKPGGRLVCG 120
T L +D I + Y+ + + + L P G +
Sbjct: 137 AGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFF- 195
Query: 121 VGKSKSYHRMTVIDRSEDGTHFQKYEISLENF 152
K + ED + + F
Sbjct: 196 --KENCSTGDRFLVDKEDSSLTRSDIHYKRLF 225
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 35.9 bits (82), Expect = 0.007
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
+ + + K V+D +G G + V A + + V +E + + R
Sbjct: 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGY 134
Query: 66 PDLLNDG----RLHLRCRDGRTGLLHQAP-FDAIYLSTYVPE 102
D G RL L T L P +YL P
Sbjct: 135 ADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPH 176
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 35.2 bits (81), Expect = 0.007
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 21/111 (18%)
Query: 17 GAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLND--GR 73
K+L + G G +C A L G V V D + L + +
Sbjct: 30 QGKILCLAEGEGRNACFLASL----GYEVTAV--------DQSSVGLAKAKQLAQEKGVK 77
Query: 74 LHLRCRDGRTGLLHQAPFDAIYLSTYV--PEIPYSILLQ----LKPGGRLV 118
+ + + ++ I + + + LKPGG +
Sbjct: 78 ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFI 128
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 34.5 bits (79), Expect = 0.017
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 15/124 (12%)
Query: 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL 76
+++D+G G+G + + + +V V+ + V P+ R
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRLNVETNMPE--ALDRCEF 279
Query: 77 RCRDGRTGLLHQAPFDAIYL-------STYVPEIPYSILLQ----LKPGGRLVCGVGKSK 125
+ +G + F+A+ + + + LK G L +
Sbjct: 280 MINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL 338
Query: 126 SYHR 129
Y
Sbjct: 339 DYFH 342
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 34.0 bits (78), Expect = 0.022
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 39/129 (30%)
Query: 9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGV---EHM----REQCEDAWET 60
E +E +VLD+ G+G + AE G V G+ E M R + ++
Sbjct: 34 FKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKER--- 86
Query: 61 VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY-----------SILL 109
+ ++ D + + FDA+ + I Y +
Sbjct: 87 ----------NLKIEFLQGDVLE-IAFKNEFDAVTMFFST--IMYFDEEDLRKLFSKVAE 133
Query: 110 QLKPGGRLV 118
LKPGG +
Sbjct: 134 ALKPGGVFI 142
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 33.2 bits (76), Expect = 0.030
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 34/128 (26%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
+++ LE + E VLD+G+ +G ++ K V + E +R
Sbjct: 13 LMDALEREGLEMKIVLDLGTSTGVITEQLR----KRNTVVSTDLNIRALESHRG-GNLVR 67
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST-YVPEIPYS--------------ILLQ 110
DLL ++Q D + + YVP+ +
Sbjct: 68 ADLLCS--------------INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDA 113
Query: 111 LKPGGRLV 118
+ G +
Sbjct: 114 VTVGMLYL 121
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A
{Lactobacillus delbrueckii subsp}
Length = 205
Score = 33.3 bits (77), Expect = 0.035
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 7 IELLEPKIQEGAKVLDIGSGSG 28
+ +E + + V D+G+GSG
Sbjct: 51 MLGIERAMVKPLTVADVGTGSG 72
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 33.3 bits (77), Expect = 0.042
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 36/135 (26%)
Query: 2 QQA---RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDA 57
Q A ++ L+ ++ G +LDIG G G E + V G+ + Q
Sbjct: 75 QYAKVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVE---RFDVNVIGLTLSKNQHARC 129
Query: 58 WETVMRIRPDLLNDGRLHLRCRDGR--TGLLHQAPFDAI------------YLSTYVPEI 103
+ + N + + P D I +
Sbjct: 130 EQ---VLASIDTNR-SRQVLLQGWEDFAE-----PVDRIVSIEAFEHFGHENYDDFFKRC 180
Query: 104 PYSILLQLKPGGRLV 118
++I + GR+
Sbjct: 181 -FNI---MPADGRMT 191
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 33.2 bits (76), Expect = 0.044
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL 76
K++D+ SG+G + + + ++ GVE + A +V + ++ +
Sbjct: 50 KGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAY----NQLEDQIEI 103
Query: 77 RCRDGR--TGLLHQAPFDAI 94
D + T L+ + D +
Sbjct: 104 IEYDLKKITDLIPKERADIV 123
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 32.9 bits (76), Expect = 0.051
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 27/118 (22%)
Query: 14 IQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
+Q G +LD+G G G E K V G+ + Q + +
Sbjct: 62 LQPGMTLLDVGCGWGATMMRAVE---KYDVNVVGLTLSKNQANHVQQ---LVANSENLR- 114
Query: 73 RLHLRCRDGRTGLLHQAPFDAI------------YLSTYVPEIPYSILLQLKPGGRLV 118
+ + P D I + + + L G ++
Sbjct: 115 SKRVLLAGWEQ--FDE-PVDRIVSIGAFEHFGHERYDAFFSLA-HRL---LPADGVML 165
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 32.6 bits (74), Expect = 0.061
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 1 MQQARIIELLEPKI-QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
+ I+ L ++ + VLDIG G G+ + FA+ + + FG++ + + A
Sbjct: 69 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAA-- 125
Query: 60 TVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLV 118
R ++ DAI + Y P + +KPGG ++
Sbjct: 126 ---AKR-----YPQVTFCVASSHRLPFSDTSMDAI-IRIYAPCKAEELARVVKPGGWVI 175
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 32.6 bits (75), Expect = 0.068
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 7 IELLEPKIQEGAKVLDIGSGSG 28
++ L ++ G KVLD+G+GSG
Sbjct: 111 LKALARHLRPGDKVLDLGTGSG 132
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 31.8 bits (73), Expect = 0.13
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 16/97 (16%)
Query: 2 QQA---RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDA 57
Q A ++ L ++ G +LDIG G G + V G+ Q
Sbjct: 57 QYAKRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVA---EYDVNVIGLTLSENQYAHD 111
Query: 58 WETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94
R +R + + P D I
Sbjct: 112 KA---MFDEVDSPR-RKEVRIQGWEE--FDE-PVDRI 141
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 30.7 bits (70), Expect = 0.20
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 22/121 (18%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
+E + + +LD+G G G + A+ V + R + A E +
Sbjct: 45 VENVVVD--KDDDILDLGCGYGVIGIALADEVKS---TTMADINRRAIKLAKENIKLNN- 98
Query: 67 DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP------EIPYSILLQ----LKPGGR 116
L++ + + D + + ++ I ++ P E+ + I+ + LK G
Sbjct: 99 --LDNYDIRVVHSDLYENVKDR-KYNKI-ITN--PPIRAGKEVLHRIIEEGKELLKDNGE 152
Query: 117 L 117
+
Sbjct: 153 I 153
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 31.2 bits (71), Expect = 0.21
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSG-FMSCV---FAELVGKTGRVFGVE 48
A ++E + K ++ +LD G+ ++ V GV+
Sbjct: 119 AYLLEKVIQK-KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVD 166
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 30.8 bits (69), Expect = 0.25
Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 32/193 (16%)
Query: 9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL 68
L+ + G VLD+G G G + G +GV+ DA ++
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRF 114
Query: 69 LNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIP-------YSILLQLKPGGRLVCGV 121
R + + Y +I L+PGG +
Sbjct: 115 KVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM-- 172
Query: 122 GKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHFQK 181
TV R +++ +S + + E+ ++ + ++
Sbjct: 173 ---------TVPSRDVILERYKQGRMSNDFY----KIELEKMEDVPME--------SVRE 211
Query: 182 YEISLENFINPLI 194
Y +L + +N I
Sbjct: 212 YRFTLLDSVNNCI 224
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 30.9 bits (69), Expect = 0.27
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 10/101 (9%)
Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE---HMREQCEDAWETVMRIRPDLL 69
V D +G G S V A +G V E + D +
Sbjct: 80 NHTAHPTVWDATAGLGRDSFVLAS-LGL--TVTAFEQHPAVACLLSDGIRRALLNPETQD 136
Query: 70 NDGRLHLRCRDGRTGLLHQA----PFDAIYLSTYVPEIPYS 106
R++L + + D +YL PE S
Sbjct: 137 TAARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPERRKS 177
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 30.6 bits (68), Expect = 0.27
Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 23/184 (12%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETV 61
I L E + + V D+G G + + + ++ G+++ + E + +
Sbjct: 45 ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI 104
Query: 62 MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY------SILLQLKPGG 115
++ + + C D R + A + + I L P G
Sbjct: 105 AAYH----SEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNG 160
Query: 116 RLVCGVGKSKSYHRMTVIDRSE----------DGTHFQKYEISLENFINPLINADEQNDN 165
LV ++ + + +LEN + + E +
Sbjct: 161 VLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTD--SIETHKV 218
Query: 166 WLYQ 169
L
Sbjct: 219 RLKN 222
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping;
HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP:
c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A*
2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A*
1g38_A*
Length = 421
Score = 31.2 bits (70), Expect = 0.28
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
++ L E G +VL+ G F E G R GVE
Sbjct: 30 FMVSLAEAP--RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVE 71
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure
initiative; 1.75A {Thermoplasma acidophilum} SCOP:
c.66.1.32
Length = 200
Score = 30.4 bits (68), Expect = 0.32
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
+IE+ G V+D G+G+G ++C L V + + E A +
Sbjct: 41 LIEIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCGGV 97
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 30.4 bits (69), Expect = 0.38
Identities = 14/125 (11%), Positives = 28/125 (22%), Gaps = 21/125 (16%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
A + I +G + + + ++ E A
Sbjct: 49 AATTNGNGST-----GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKAL--- 100
Query: 64 IRPDLLNDGRLHLRCRDGRTGL--LHQAPFDAIYL-------STYVPEIPYSILLQLKPG 114
R + R+ + L + ++ V L+ G
Sbjct: 101 FREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDA----AWPLLRRG 156
Query: 115 GRLVC 119
G LV
Sbjct: 157 GALVL 161
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 30.0 bits (68), Expect = 0.42
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
QA+++ L ++ + K LD+G+ +G+ + A + GRV E + E
Sbjct: 57 QAQLLANL-ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP 112
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 29.9 bits (67), Expect = 0.51
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 12/64 (18%)
Query: 67 DLLNDGRLHLRCRDGRTGL--LHQAPFDAIYLSTYVPE-IPYSILLQ---------LKPG 114
D+ R+ +R D R A D I + P + L PG
Sbjct: 134 DIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPG 193
Query: 115 GRLV 118
G V
Sbjct: 194 GLYV 197
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 30.0 bits (68), Expect = 0.51
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 25/131 (19%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
+ L P KVLD+G G+G +S FA K R+ + E + T+
Sbjct: 189 LSTLTPH--TKGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAA--- 242
Query: 67 DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS--------TYVPEIPYSILLQ----LKPG 114
N + + + + + FD I +S + +++ L G
Sbjct: 243 ---NGVEGEVFASNVFSEV--KGRFDMI-ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSG 296
Query: 115 GRLVCGVGKSK 125
G L V +
Sbjct: 297 GELRI-VANAF 306
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 29.8 bits (67), Expect = 0.57
Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 22/122 (18%)
Query: 8 ELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIR 65
E+LE K+ + K LD+G G+G S A G V + +
Sbjct: 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANV-----ERI 73
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYV---------PEIPYSILLQLKPGGR 116
+ N LH R D +D I LST V P + ++ KPGG
Sbjct: 74 KSIENLDNLHTRVVDLNNLTF-DRQYDFI-LSTVVLMFLEAKTIPGLIANMQRCTKPGGY 131
Query: 117 LV 118
+
Sbjct: 132 NL 133
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 29.6 bits (67), Expect = 0.59
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 4 ARIIELLEPKIQEGAKVLDIGSGSGF 29
++ + + D+G+G+GF
Sbjct: 60 ITAAFYVDFN--QVNTICDVGAGAGF 83
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 29.5 bits (65), Expect = 0.70
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 37/124 (29%)
Query: 15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE-------HMREQCEDAWETVMRIR-- 65
+G +VL++G G + E + +E +R+ V+ ++
Sbjct: 59 SKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL 116
Query: 66 -PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ-----------LKP 113
D+ L FD I TY Q LKP
Sbjct: 117 WEDVAPT--------------LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162
Query: 114 GGRL 117
GG L
Sbjct: 163 GGVL 166
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 29.6 bits (67), Expect = 0.76
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIR 65
++++ K + G +V+ + + + FM+ AE + G V V + +
Sbjct: 518 EQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA---NYMHFTLEY 574
Query: 66 PDLL 69
P+++
Sbjct: 575 PNMM 578
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 29.3 bits (66), Expect = 0.78
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 12 PKIQEGAKVLDIGSGSGF 29
P Q +VLD+G+G+GF
Sbjct: 76 PLWQGPLRVLDLGTGAGF 93
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 29.1 bits (66), Expect = 0.87
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 22/128 (17%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDA---W 58
Q R++ LL +I++ V+ G G G S FA + + RV ++ R+ E A
Sbjct: 43 QTGRLLYLLA-RIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRML 101
Query: 59 ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL-------STYVPEIPYSILLQL 111
L R+ L+ D Q D +++ + + + L
Sbjct: 102 H-----DNGL--IDRVELQVGDPLGIAAGQRDIDILFMDCDVFNGADVLER----MNRCL 150
Query: 112 KPGGRLVC 119
L+
Sbjct: 151 AKNALLIA 158
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 28.8 bits (65), Expect = 0.98
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 16 EGAKVLDIGSGSGF 29
+G + +D+G+G G
Sbjct: 65 QGERFIDVGTGPGL 78
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase;
2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB:
1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Length = 177
Score = 28.6 bits (65), Expect = 1.0
Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 121 VGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA--DEQNDNW 166
+G K ++ V+ ++ + ++ +NP+I + + W
Sbjct: 54 IGILK---QIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFW 98
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 29.1 bits (66), Expect = 1.1
Identities = 37/150 (24%), Positives = 50/150 (33%), Gaps = 57/150 (38%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI--- 64
L P Q G +LD+ + G GKT H+ E +A + I
Sbjct: 240 TWLAP--QNGEHILDLCAAPG----------GKTT------HILEVAPEAQVVAVDIDEQ 281
Query: 65 RPDLLNDG--RLHLRCR----DGRT--GLLHQAPFDAIYL-----STYV----PEIPYS- 106
R + D RL ++ DGR + FD I L +T V P+I +
Sbjct: 282 RLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLR 341
Query: 107 --------ILLQ----------LKPGGRLV 118
LQ LK GG LV
Sbjct: 342 RDRDIPELAQLQSEILDAIWPHLKTGGTLV 371
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH;
2.70A {Vaccinia virus}
Length = 302
Score = 29.0 bits (64), Expect = 1.1
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 2/55 (3%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
KVL I G+G + G+ + + + E
Sbjct: 37 MYCSKTFLDDSNKRKVLAIDFGNGADLEKYFY--GEIALLVATDPDADAIARGNE 89
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 29.1 bits (66), Expect = 1.2
Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 34 FAELV-GKTGRVFG 46
EL+ K GRV G
Sbjct: 291 ILELIRAKAGRVLG 304
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 29.1 bits (66), Expect = 1.2
Identities = 8/13 (61%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 35 AELV-GKTGRVFG 46
EL+ K GRVFG
Sbjct: 295 LELIRSKAGRVFG 307
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 29.1 bits (66), Expect = 1.2
Identities = 8/13 (61%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 35 AELV-GKTGRVFG 46
EL+ GK GRV G
Sbjct: 289 LELIRGKCGRVQG 301
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 28.3 bits (64), Expect = 1.7
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSG 28
I L ++ G +V+D+G+GSG
Sbjct: 21 AIRFL-KRMPSGTRVIDVGTGSG 42
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 28.5 bits (63), Expect = 1.7
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAEL-VGKTGRVFGVE 48
+ + K++D G+ G + GK RV+ +E
Sbjct: 217 FRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIE 259
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 28.1 bits (62), Expect = 2.0
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDA 57
+ A I + + V+D G G + FA RV ++ + A
Sbjct: 64 KIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFAL---TGMRVIAIDIDPVKIALA 116
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 27.8 bits (63), Expect = 2.1
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 9/36 (25%)
Query: 10 LEPKIQEGAKVLDI--GSGS-GF------MSCVFAE 36
L + + LD GSG+ G V E
Sbjct: 35 LRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVE 70
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 28.0 bits (63), Expect = 2.2
Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
+++ + K+ K +++G +G+ + A + G++ ++ RE E
Sbjct: 58 AGQLMSFVL-KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLP 113
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.0 bits (63), Expect = 2.3
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 24/113 (21%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
+L ++ +G KV+ ++ V AEL+ + G + Q + T
Sbjct: 512 PDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV--SSWTNNTFE 569
Query: 66 PDLL--------------------NDGRLHLRCRDGRTGLLHQAPFDAIYLST 98
+ + G + +R + + DA+ + T
Sbjct: 570 VNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYA--SIERELECDAVVMVT 620
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 27.9 bits (63), Expect = 2.4
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 6 IIELL--EPKIQEGAKVLDIGSGSG 28
I + + ++ G L+IG+G
Sbjct: 43 ISRYIFLKTFLRGGEVALEIGTGHT 67
>2hqk_A CYAN fluorescent chromoprotein; 11-stranded beta barrel,
luminescent protein; HET: PIA; 1.19A {Clavularia SP}
PDB: 2ote_A* 2otb_A* 2vzx_A* 3adf_A* 2gw4_A*
Length = 219
Score = 27.5 bits (61), Expect = 2.5
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 105 YSILLQLKPGGRLVCGVG---KSKS----------YHRMTVIDRSEDGTHFQKYEIS 148
L L+ GG ++K HR+ +++ +D YE +
Sbjct: 154 VKHKLLLEGGGHHRVDFKTIYRAKKAVKLPDYHFVDHRIEILNHDKDYNKVTVYESA 210
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR
biosynthesis; 2.00A {Streptococcus mutans}
Length = 238
Score = 27.8 bits (62), Expect = 2.7
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 121 VGKSKSYHRMTVID----RSEDGTHFQKYEISLENFINPLI 157
+ SK R+ + +DG ++ E NP I
Sbjct: 112 LDISK---RIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRI 149
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics,
transferase; HET: SAH; 2.20A {Pyrococcus horikoshii}
SCOP: c.66.1.32
Length = 207
Score = 27.4 bits (60), Expect = 3.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
EG V D+G+G+G +S L V VE +E + E
Sbjct: 49 EGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIE 90
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 27.3 bits (61), Expect = 3.3
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
+ + + +L KI ++++IG+ +G+ S FA + + G++ + E A +
Sbjct: 48 EGQFLNILT-KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARK 103
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae
PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas
oryzae PV}
Length = 171
Score = 27.1 bits (61), Expect = 3.3
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 121 VGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA--DEQNDNW 166
+ ++ V + + + L N I DE + W
Sbjct: 52 IAVDL---QLMVFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGW 96
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 27.5 bits (60), Expect = 3.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHM 50
EG VLD+G+GSG ++ A+ + +V+ VE
Sbjct: 63 EGKTVLDVGTGSGILAIWSAQAGAR--KVYAVEAT 95
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 27.1 bits (61), Expect = 4.1
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 29/98 (29%)
Query: 10 LEPKIQEGAKVLDI--GSGS--------GFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
L P I A+ LD GSG+ +E R + +
Sbjct: 49 LAPVI-VDAQCLDCFAGSGALGLEALSRYAAGATL------------IEMDRAVSQQLIK 95
Query: 60 TVMRIRPDLLNDGRLHLRCRDGRTGLLHQA-PFDAIYL 96
+ L G + + + L + P + +++
Sbjct: 96 NL-----ATLKAGNARVVNSNAMSFLAQKGTPHNIVFV 128
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 26.9 bits (60), Expect = 4.9
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDA 57
QA+ + LL + +VL+IG G+ + A + G++ + A
Sbjct: 60 QAQFLGLLI-SLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 26.9 bits (60), Expect = 5.0
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
QA+ +++L ++ KVL++G+ +G+ + + + G+V + + A
Sbjct: 48 QAQFMQMLI-RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP 103
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 26.6 bits (59), Expect = 5.5
Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
+ + + +L K+ ++IG +G+ A + + G++ ++ +E E
Sbjct: 67 EGQFLSMLL-KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP 122
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 26.7 bits (58), Expect = 5.8
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 18/142 (12%)
Query: 8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
EL E Q +D+G+G G A G++ ++E D + +++
Sbjct: 16 ELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSK 74
Query: 68 LLNDGRLHLRCRDGRTGLLHQAPF---DAIYLSTYVPEIPYSILLQ-----------LKP 113
G ++ L D+I + + ++ K
Sbjct: 75 ---GGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKK 131
Query: 114 GGRLVCGVGKSKSYHRMTVIDR 135
S SY + R
Sbjct: 132 EAHFEFVTTYSDSYEEAEIKKR 153
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB:
3epp_A*
Length = 313
Score = 26.8 bits (58), Expect = 5.8
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
+E + K + VLD+G G G + + G+ ++ + + +
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK--GRINKLVCTDIADVSVKQCQQ 75
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 26.6 bits (58), Expect = 6.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 12 PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHM 50
P I + VLD+G G+G +S A+ K +V GV+
Sbjct: 60 PHIFKDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQS 96
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 26.6 bits (58), Expect = 6.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 12 PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
+ + VLD+G G+G +S A+ K V GV+ M E A E V
Sbjct: 34 KDLFKDKIVLDVGCGTGILSMFAAKHGAK--HVIGVD-MSSIIEMAKELVEL 82
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 26.6 bits (58), Expect = 6.9
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE--HMREQCEDAWE 59
+ VLD+GSG+G + A+ + +V G+E + + +
Sbjct: 66 KDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVK 109
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 26.5 bits (59), Expect = 6.9
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
QA+++ LL K+ + KV+DIG+ +G+ + + K G + + + A E
Sbjct: 52 QAQLLALLV-KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKE 107
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 26.3 bits (59), Expect = 7.2
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 121 VGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLI 157
VG RM +I+ ++ K + INP
Sbjct: 51 VGLPL---RMLIINLPQEDGVQHKED--CLEIINPKF 82
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 26.3 bits (59), Expect = 7.3
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
+I+ + + E + +IGSG G + ELV + V +E
Sbjct: 21 KIMTNIR--LNEHDNIFEIGSGKGHFT---LELVQRCNFVTAIE 59
>3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller,
structural genomics, joint center F structural genomics,
JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB:
3r67_A*
Length = 356
Score = 26.6 bits (58), Expect = 7.3
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 7/41 (17%)
Query: 135 RSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRSED 175
S DG HF++ P + N +ED
Sbjct: 87 TSTDGIHFERDT-------KPAFYPAKDNQAENECPGGTED 120
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR
{Streptococcus pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 26.4 bits (59), Expect = 7.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
+II+ L K E V +IG+G G ++ +L + +V +E
Sbjct: 20 QIIKQLNLK--ETDTVYEIGTGKGHLT---TKLAKISKQVTSIE 58
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 26.4 bits (59), Expect = 7.9
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 91 FDAIYLSTYVPEIPYSILLQ-LKPGGRLVCGVG 122
+ L T V +S + ++ GG + G
Sbjct: 233 AHGV-LVTAVSPKAFSQAIGMVRRGGTIAL-NG 263
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 26.4 bits (57), Expect = 8.5
Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR-IR 65
+E L K+ KV D S SG + F + + + A E + +
Sbjct: 43 LEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDI----SSKAIEIMKENFK 98
Query: 66 PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSIL 108
+ + + R + + L + F Y+ P +
Sbjct: 99 LNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVPFI 141
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics,
APC5047, conserved hypothetical protein, PSI, protein
structure initiative; HET: MSE; 1.80A {Pseudomonas
aeruginosa} SCOP: d.279.1.1
Length = 94
Score = 25.1 bits (55), Expect = 8.7
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 45 FGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ 88
G + AW+ + + L+N+ RL++ + R L +
Sbjct: 28 KGEDIYNNVSRKAWDEWQKHQTMLINERRLNMMNAEDRKFLQQE 71
>3svj_P Peptide deformylase 3; alpha-beta, metal binding protein, HYDR
hydrolase inhibitor complex; HET: 4LI; 1.55A
{Streptococcus pneumoniae} PDB: 3str_P* 3sw8_P* 1lm6_A
2aia_A* 2ai7_A* 2aie_P* 2os3_A*
Length = 203
Score = 26.1 bits (58), Expect = 8.8
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 121 VGKSKSYHRMTVID---RSEDGTHFQKYEISLENFINPLI 157
+ SK R+ + E+G Q+ NP I
Sbjct: 78 LDISK---RIIAVLVPNIVEEGETPQEAYDLEAIMYNPKI 114
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga
hutchinsonii atcc 33406}
Length = 362
Score = 26.1 bits (58), Expect = 9.2
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK 40
+ LL ++ +VL + S + + V K
Sbjct: 49 SDNLKTLL--ELPSNYEVLFLASATEIWERIIQNCVEK 84
>2rh7_A Green fluorescent protein; HET: CRO; 1.50A {Renilla reniformis}
SCOP: d.22.1.1
Length = 239
Score = 26.0 bits (57), Expect = 9.2
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG---KSKS-----------YHRMTV 132
Q ++++Y + I +L+ G + KSK HR+
Sbjct: 141 MQPSYESMYTNVTSVIGECIIAFKLQTGKHFTYHMRTVYKSKKPVETMPLYHFIQHRLVK 200
Query: 133 IDRSEDGTHFQKYEIS 148
+ + ++E +
Sbjct: 201 TNVDTASGYVVQHETA 216
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 25.9 bits (58), Expect = 9.3
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 6 IIELLEPKIQEGAKVLDIGSGSG 28
+EL+ V DIG+GSG
Sbjct: 115 ALELIRKY--GIKTVADIGTGSG 135
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 25.6 bits (57), Expect = 9.9
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 11/55 (20%)
Query: 121 VGKSKSYHRMTVIDRSEDGTHFQKYEISLEN------FINPLINADEQNDNWLYQ 169
+G S+ R+ V D ++ E NP+I +
Sbjct: 50 IGLSQ---RLFVAVEYADEPEGEEERPLRELVRRVYVVANPVI--TYREGLVEGT 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,441,509
Number of extensions: 202105
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 189
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)