BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14967
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
Length = 175
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 15 FDRPSRLLDQHFGLGLRRDDLLSNWSSLAQSARPIGAGYLRP---WRSLARSNSGVSNIT 71
F PSRL DQ FG L DL +SL+ YLRP R+ + ++G+S +
Sbjct: 17 FHSPSRLFDQFFGEHLLESDLFPTSTSLS-------PFYLRPPSFLRAPSWFDTGLSEMR 69
Query: 72 NEENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVE 131
E+++ V LDV+ FSP E+ +K + I V FISR+F R+Y +P DV+
Sbjct: 70 LEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVD 129
Query: 132 IEKVTSSLSSDGVLTITAPKR 152
+TSSLSSDGVLT+ P++
Sbjct: 130 PLTITSSLSSDGVLTVNGPRK 150
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
Length = 106
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYL 125
GVS + ++ K V LDV+ FSP+E+S+K D ++ + +ISR+F RRY
Sbjct: 1 GVSEVRSDREKFTVYLDVKHFSPDELSVKVTDDYVEIQGKHGERQDDHGYISREFHRRYR 60
Query: 126 LPKDVEIEKVTSSLSSDGVLTITAPK 151
LP +V+ +T +LS+DG+LT+ PK
Sbjct: 61 LPSNVDQSAITCTLSADGLLTLCGPK 86
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
Length = 106
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 64 NSGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRR 123
SG+S + ++ +K + LDV+ FSP ++++K + F+ + +ISR+F RR
Sbjct: 1 GSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRR 60
Query: 124 YLLPKDVEIEKVTSSLSSDGVLTITAPK 151
Y LP +V+ ++ SLS+DG+LT + PK
Sbjct: 61 YRLPSNVDQSALSCSLSADGMLTFSGPK 88
>pdb|2WJ7|A Chain A, Human Alphab Crystallin
pdb|2WJ7|B Chain B, Human Alphab Crystallin
pdb|2WJ7|C Chain C, Human Alphab Crystallin
pdb|2WJ7|D Chain D, Human Alphab Crystallin
pdb|2WJ7|E Chain E, Human Alphab Crystallin
Length = 94
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYL 125
G + E+++ V LDV+ FSP E+ +K + I V FISR+F R+Y
Sbjct: 1 GAMEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYR 60
Query: 126 LPKDVEIEKVTSSLSSDGVLTITAPKR 152
+P DV+ +TSSLSSDGVLT+ P++
Sbjct: 61 IPADVDPLTITSSLSSDGVLTVNGPRK 87
>pdb|3L1G|A Chain A, Human Alphab Crystallin
Length = 96
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 73 EENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEI 132
E+++ V LDV+ FSP E+ +K + I V FISR+F R+Y +P DV+
Sbjct: 5 EKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDP 64
Query: 133 EKVTSSLSSDGVLTITAPKR 152
+TSSLSSDGVLT+ P++
Sbjct: 65 LTITSSLSSDGVLTVNGPRK 84
>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157)
Length = 90
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 73 EENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEI 132
E+++ V LDV+ FSP E+ +K + I V FISR+F R+Y +P DV+
Sbjct: 4 EKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDP 63
Query: 133 EKVTSSLSSDGVLTITAPKR 152
+TSS SSDGVLT+ P++
Sbjct: 64 LTITSSXSSDGVLTVNGPRK 83
>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|B Chain B, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|C Chain C, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|D Chain D, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|E Chain E, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|F Chain F, Human Alphab-Crystallin Domain (Residues 67-157)
Length = 94
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 73 EENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEI 132
E+++ V LDV+ FSP E+ +K + I V FISR+F R+Y +P DV+
Sbjct: 8 EKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDP 67
Query: 133 EKVTSSLSSDGVLTITAPKR 152
+TSS SSDGVLT+ P++
Sbjct: 68 LTITSSXSSDGVLTVNGPRK 87
>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain
Length = 101
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYL 125
++ + + V+LDV+ FSP EIS+K V + V FI+R+F RRY
Sbjct: 2 AMAQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYR 61
Query: 126 LPKDVEIEKVTSSLSSDGVLTITA 149
LP V+ VTS+LS +GVL+I A
Sbjct: 62 LPPGVDPAAVTSALSPEGVLSIQA 85
>pdb|2Y1Z|A Chain A, Human Alphab Crystallin Acd R120g
pdb|2Y1Z|B Chain B, Human Alphab Crystallin Acd R120g
Length = 94
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYL 125
G + E+++ V LDV+ FSP E+ +K + I V FISR+F +Y
Sbjct: 1 GAMEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHGKYR 60
Query: 126 LPKDVEIEKVTSSLSSDGVLTITAPKR 152
+P DV+ +TSS+SSDGVLT+ P++
Sbjct: 61 IPADVDPLTITSSMSSDGVLTVNGPRK 87
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
Length = 103
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 68 SNITNEENKVQVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLP 127
S + ++ +K + LDV+ FSP ++++K + F+ + +ISR+F RRY LP
Sbjct: 2 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLP 61
Query: 128 KDVEIEKVTSSLSSDGVLTITAPK 151
+V+ ++ SLS+DG+LT + PK
Sbjct: 62 SNVDQSALSCSLSADGMLTFSGPK 85
>pdb|3Q9P|A Chain A, Hspb1 Fragment
pdb|3Q9Q|A Chain A, Hspb1 Fragment Second Crystal Form
pdb|3Q9Q|B Chain B, Hspb1 Fragment Second Crystal Form
Length = 85
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 78 QVILDVQQFSPNEISIKTVDGFILVXXXXXXXXXXXXFISRQFKRRYLLPKDVEIEKVTS 137
+V LDV F+P+E+++KT DG + + +ISR F R+Y LP V+ +V+S
Sbjct: 10 RVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSS 69
Query: 138 SLSSDGVLTITAP 150
SLS +G LT+ AP
Sbjct: 70 SLSPEGTLTVEAP 82
>pdb|1T3T|A Chain A, Structure Of Formylglycinamide Synthetase
pdb|3UJN|A Chain A, Formyl Glycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium : Role Of The Atp Complexation
And Glutaminase Domain In Catalytic Coupling
pdb|3UMM|A Chain A, Formylglycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 4 VPLLFRDWWDDFDRPSRLLDQHFGLGLRRDDLLSNWSSLAQSARPIGAGYLRPWRSLARS 63
+P + W +DF +P R++ L + + L + + RP GY R + S
Sbjct: 350 IPGFEQPWEEDFGKPERIVT---ALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNS 406
Query: 64 NSG 66
++G
Sbjct: 407 HNG 409
>pdb|3UGJ|A Chain A, Formyl Glycinamide Ribonucletide Amidotransferase From
Salmonella Typhimurum: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 4 VPLLFRDWWDDFDRPSRLLDQHFGLGLRRDDLLSNWSSLAQSARPIGAGYLRPWRSLARS 63
+P + W +DF +P R++ L + + L + + RP GY R + S
Sbjct: 350 IPGFEQPWEEDFGKPERIVT---ALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNS 406
Query: 64 NSG 66
++G
Sbjct: 407 HNG 409
>pdb|2DNL|A Chain A, Solution Structure Of Rna Binding Domain In Cytoplasmic
Polyadenylation Element Binding Protein 3
Length = 114
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 126 LPKDVEIEKVTSSLSSDGVLTITAPKRVSTRFYF 159
LP D++ +++T+S G L + P + ++ YF
Sbjct: 16 LPPDIDEDEITASFRRFGPLVVDWPHKAESKSYF 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,233,212
Number of Sequences: 62578
Number of extensions: 140452
Number of successful extensions: 438
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 16
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)