Query psy14967
Match_columns 168
No_of_seqs 201 out of 1403
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 17:07:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 2.4E-26 5.1E-31 171.9 12.6 95 66-163 33-135 (142)
2 PRK10743 heat shock protein Ib 99.9 2.9E-26 6.3E-31 170.7 12.8 95 66-163 35-137 (137)
3 cd06497 ACD_alphaA-crystallin_ 99.9 3.1E-26 6.8E-31 158.0 11.5 84 68-151 3-86 (86)
4 cd06498 ACD_alphaB-crystallin_ 99.9 8.6E-26 1.9E-30 155.2 11.2 83 70-152 2-84 (84)
5 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.1E-25 2.3E-30 154.3 11.3 83 69-151 1-83 (83)
6 COG0071 IbpA Molecular chapero 99.9 6.9E-25 1.5E-29 164.9 13.9 97 65-162 40-145 (146)
7 cd06476 ACD_HspB2_like Alpha c 99.9 4.9E-25 1.1E-29 151.1 11.3 82 70-151 2-83 (83)
8 cd06475 ACD_HspB1_like Alpha c 99.9 1.8E-24 4E-29 149.2 11.3 83 68-150 3-85 (86)
9 KOG3591|consensus 99.9 7.5E-24 1.6E-28 163.2 14.5 99 65-163 62-162 (173)
10 cd06477 ACD_HspB3_Like Alpha c 99.9 8E-24 1.7E-28 145.0 11.1 80 71-150 3-82 (83)
11 cd06479 ACD_HspB7_like Alpha c 99.9 6.2E-24 1.3E-28 144.9 10.0 80 69-151 2-81 (81)
12 PF00011 HSP20: Hsp20/alpha cr 99.9 2.9E-23 6.2E-28 146.5 13.1 94 69-163 1-102 (102)
13 cd06480 ACD_HspB8_like Alpha-c 99.9 5.9E-23 1.3E-27 142.8 10.5 83 69-151 9-91 (91)
14 cd06472 ACD_ScHsp26_like Alpha 99.9 7.1E-23 1.5E-27 142.6 10.2 83 68-151 2-92 (92)
15 cd06481 ACD_HspB9_like Alpha c 99.9 2.9E-22 6.2E-27 138.5 10.2 80 72-151 4-87 (87)
16 cd06526 metazoan_ACD Alpha-cry 99.9 3.1E-22 6.7E-27 136.9 10.2 77 74-151 6-83 (83)
17 cd06471 ACD_LpsHSP_like Group 99.9 3.7E-22 7.9E-27 139.0 10.3 83 67-151 2-93 (93)
18 cd06482 ACD_HspB10 Alpha cryst 99.9 1.8E-21 4E-26 134.4 10.6 79 72-150 5-86 (87)
19 cd06470 ACD_IbpA-B_like Alpha- 99.9 4.6E-21 1E-25 133.1 11.3 83 66-151 1-90 (90)
20 cd06464 ACD_sHsps-like Alpha-c 99.8 7.7E-20 1.7E-24 124.6 9.9 82 69-151 1-88 (88)
21 KOG0710|consensus 99.6 9.6E-16 2.1E-20 120.5 6.5 99 65-164 84-194 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 1.2E-14 2.6E-19 95.5 10.0 80 70-151 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 6.8E-12 1.5E-16 84.0 8.4 70 71-154 2-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.1 1E-09 2.3E-14 84.3 9.9 80 64-157 90-173 (177)
25 cd06463 p23_like Proteins cont 99.0 2E-09 4.3E-14 71.9 9.0 75 71-154 2-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 3.2E-08 6.9E-13 66.8 7.9 77 69-154 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.4 1E-05 2.3E-10 53.2 10.7 77 66-151 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.2 3.9E-05 8.4E-10 54.5 10.7 78 66-153 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.1 2.5E-05 5.5E-10 52.9 8.5 77 69-154 1-77 (84)
30 PF08190 PIH1: pre-RNA process 98.0 5E-05 1.1E-09 63.4 9.1 66 74-150 260-327 (328)
31 cd06488 p23_melusin_like p23_l 97.8 0.00042 9.1E-09 47.4 9.9 78 68-154 3-80 (87)
32 cd06467 p23_NUDC_like p23_like 97.8 0.00024 5.3E-09 47.8 8.2 74 69-154 2-77 (85)
33 cd06468 p23_CacyBP p23_like do 97.8 0.0005 1.1E-08 47.1 9.8 78 68-154 4-85 (92)
34 cd00237 p23 p23 binds heat sho 97.7 0.0011 2.4E-08 47.2 11.0 79 66-155 2-80 (106)
35 cd06493 p23_NUDCD1_like p23_NU 97.6 0.00089 1.9E-08 45.5 9.1 75 69-155 2-78 (85)
36 cd06494 p23_NUDCD2_like p23-li 96.9 0.014 3E-07 40.6 9.0 77 66-155 6-84 (93)
37 PLN03088 SGT1, suppressor of 96.7 0.013 2.8E-07 49.9 9.0 80 66-154 157-236 (356)
38 PF00525 Crystallin: Alpha cry 96.6 0.00045 9.7E-09 43.9 -0.1 34 5-39 8-41 (59)
39 cd06490 p23_NCB5OR p23_like do 96.5 0.069 1.5E-06 36.4 10.2 77 69-155 2-81 (87)
40 KOG1309|consensus 95.5 0.055 1.2E-06 42.1 6.4 78 66-152 4-81 (196)
41 cd06492 p23_mNUDC_like p23-lik 95.2 0.23 5.1E-06 33.9 8.3 72 71-154 4-79 (87)
42 cd06495 p23_NUDCD3_like p23-li 93.4 1.3 2.9E-05 31.2 9.1 77 68-153 7-86 (102)
43 KOG3158|consensus 87.5 3.1 6.6E-05 32.3 6.8 79 66-155 8-86 (180)
44 KOG1667|consensus 85.1 5.2 0.00011 33.0 7.3 84 67-158 216-299 (320)
45 PF14913 DPCD: DPCD protein fa 83.7 10 0.00022 29.8 8.1 76 64-152 85-169 (194)
46 PF13349 DUF4097: Domain of un 82.6 17 0.00036 26.7 8.9 79 66-149 66-148 (166)
47 cd06482 ACD_HspB10 Alpha cryst 78.9 3.2 7E-05 28.3 3.5 34 119-154 9-42 (87)
48 cd06477 ACD_HspB3_Like Alpha c 78.0 5.3 0.00011 27.0 4.4 30 76-105 51-82 (83)
49 PF12992 DUF3876: Domain of un 77.5 8.8 0.00019 26.7 5.5 41 64-104 24-69 (95)
50 cd06479 ACD_HspB7_like Alpha c 74.6 15 0.00033 24.6 5.9 35 119-155 9-43 (81)
51 cd06478 ACD_HspB4-5-6 Alpha-cr 73.7 7.2 0.00016 26.1 4.1 32 119-152 8-39 (83)
52 PF04972 BON: BON domain; Int 73.5 7.4 0.00016 24.1 4.0 24 84-107 12-35 (64)
53 cd06471 ACD_LpsHSP_like Group 73.3 6.3 0.00014 26.6 3.8 30 75-104 62-91 (93)
54 cd06470 ACD_IbpA-B_like Alpha- 73.0 12 0.00025 25.3 5.1 35 119-155 12-46 (90)
55 PRK10743 heat shock protein Ib 72.6 6.5 0.00014 29.1 4.0 34 119-154 46-79 (137)
56 cd06476 ACD_HspB2_like Alpha c 70.5 13 0.00028 24.9 4.8 33 119-153 8-40 (83)
57 PF00347 Ribosomal_L6: Ribosom 69.9 9 0.00019 24.8 3.9 46 88-150 2-47 (77)
58 cd06497 ACD_alphaA-crystallin_ 69.5 12 0.00026 25.2 4.5 33 119-153 11-43 (86)
59 cd06464 ACD_sHsps-like Alpha-c 69.5 9.9 0.00022 24.6 4.1 33 73-105 54-87 (88)
60 KOG2265|consensus 68.0 40 0.00087 26.2 7.5 76 67-154 20-97 (179)
61 cd06469 p23_DYX1C1_like p23_li 67.9 18 0.0004 23.1 5.1 34 75-108 36-70 (78)
62 cd06472 ACD_ScHsp26_like Alpha 66.4 11 0.00024 25.4 3.8 31 74-104 59-90 (92)
63 cd06498 ACD_alphaB-crystallin_ 65.0 18 0.00039 24.3 4.6 32 119-152 8-39 (84)
64 cd06480 ACD_HspB8_like Alpha-c 64.3 16 0.00035 25.1 4.3 30 75-104 58-89 (91)
65 PRK11597 heat shock chaperone 64.1 12 0.00026 27.9 4.0 33 119-153 44-76 (142)
66 cd06475 ACD_HspB1_like Alpha c 63.9 26 0.00056 23.5 5.3 33 119-153 11-43 (86)
67 cd06481 ACD_HspB9_like Alpha c 63.6 12 0.00026 25.2 3.6 31 74-104 53-85 (87)
68 cd06526 metazoan_ACD Alpha-cry 63.6 29 0.00064 22.8 5.5 35 118-154 7-41 (83)
69 PF00011 HSP20: Hsp20/alpha cr 63.3 14 0.00031 25.0 4.0 35 75-109 55-90 (102)
70 KOG3591|consensus 60.0 18 0.00039 27.9 4.4 29 80-108 120-150 (173)
71 cd00298 ACD_sHsps_p23-like Thi 57.2 25 0.00055 21.5 4.2 32 74-105 47-79 (80)
72 PF07873 YabP: YabP family; I 55.6 9.1 0.0002 24.5 1.8 22 85-106 22-43 (66)
73 cd06463 p23_like Proteins cont 54.1 40 0.00087 21.2 4.8 35 74-108 40-75 (84)
74 PRK05518 rpl6p 50S ribosomal p 54.1 58 0.0013 25.3 6.3 45 88-150 13-57 (180)
75 CHL00140 rpl6 ribosomal protei 53.2 60 0.0013 25.0 6.3 44 88-150 12-55 (178)
76 TIGR03653 arch_L6P archaeal ri 52.2 73 0.0016 24.4 6.6 45 88-150 7-51 (170)
77 PF08308 PEGA: PEGA domain; I 51.1 59 0.0013 20.4 5.2 38 68-105 27-66 (71)
78 COG0071 IbpA Molecular chapero 50.6 42 0.0009 24.7 4.9 35 75-109 100-135 (146)
79 TIGR02856 spore_yqfC sporulati 50.5 13 0.00028 25.3 1.9 25 82-106 37-61 (85)
80 TIGR02892 spore_yabP sporulati 50.1 13 0.00029 25.3 1.9 23 84-106 20-42 (85)
81 PRK11198 LysM domain/BON super 48.1 27 0.00059 25.9 3.6 24 84-107 38-61 (147)
82 PF08845 SymE_toxin: Toxin Sym 47.7 33 0.00071 21.5 3.3 23 81-103 33-56 (57)
83 COG5091 SGT1 Suppressor of G2 47.4 10 0.00022 31.8 1.2 81 66-154 177-257 (368)
84 cd06466 p23_CS_SGT1_like p23_l 47.0 53 0.0011 21.1 4.5 35 74-108 41-76 (84)
85 PTZ00027 60S ribosomal protein 46.5 79 0.0017 24.7 6.1 47 88-150 13-59 (190)
86 PF05455 GvpH: GvpH; InterPro 36.9 1.5E+02 0.0033 23.1 6.2 38 72-109 133-170 (177)
87 COG4004 Uncharacterized protei 33.3 1.1E+02 0.0023 21.3 4.3 34 67-104 25-58 (96)
88 KOG3413|consensus 33.1 23 0.0005 26.8 1.1 24 127-151 66-89 (156)
89 cd00503 Frataxin Frataxin is a 32.5 49 0.0011 23.3 2.7 17 133-150 28-44 (105)
90 PTZ00179 60S ribosomal protein 32.2 44 0.00095 26.1 2.6 18 88-105 12-29 (189)
91 PRK10568 periplasmic protein; 31.6 78 0.0017 24.8 4.0 24 84-107 73-96 (203)
92 TIGR03654 L6_bact ribosomal pr 31.6 49 0.0011 25.4 2.7 18 88-105 11-28 (175)
93 PF03633 Glyco_hydro_65C: Glyc 31.5 85 0.0018 18.8 3.4 33 68-103 21-53 (54)
94 PRK05498 rplF 50S ribosomal pr 31.1 49 0.0011 25.5 2.7 18 88-105 12-29 (178)
95 TIGR03421 FeS_CyaY iron donor 27.6 66 0.0014 22.5 2.6 17 134-151 26-42 (102)
96 cd02178 GH16_beta_agarase Beta 27.2 2E+02 0.0044 23.0 5.8 37 93-129 60-110 (258)
97 PRK00446 cyaY frataxin-like pr 26.3 76 0.0016 22.4 2.8 16 135-151 29-44 (105)
98 PF14014 DUF4230: Protein of u 25.4 86 0.0019 22.9 3.1 36 69-104 40-75 (157)
99 PF01491 Frataxin_Cyay: Fratax 25.0 80 0.0017 22.3 2.7 18 133-151 30-47 (109)
100 COG3065 Slp Starvation-inducib 25.0 3.4E+02 0.0073 21.3 6.2 32 75-110 93-125 (191)
101 TIGR00251 conserved hypothetic 24.7 1.4E+02 0.003 20.3 3.8 37 70-107 1-40 (87)
102 PF01954 DUF104: Protein of un 24.5 53 0.0011 20.8 1.5 30 133-164 3-32 (60)
103 PRK10568 periplasmic protein; 24.2 1.2E+02 0.0026 23.7 3.8 23 84-106 152-174 (203)
104 TIGR03422 mito_frataxin fratax 22.9 71 0.0015 22.2 2.1 15 136-151 30-44 (97)
105 cd02175 GH16_lichenase lichena 22.7 2.6E+02 0.0057 21.6 5.5 40 88-129 31-80 (212)
106 PF12971 NAGLU_N: Alpha-N-acet 22.7 1E+02 0.0023 20.6 2.8 29 77-105 20-49 (86)
107 KOG3260|consensus 21.7 1.5E+02 0.0031 23.5 3.7 75 69-152 78-153 (224)
108 PRK11023 outer membrane lipopr 21.5 1.4E+02 0.0031 23.0 3.8 24 84-107 140-163 (191)
109 PLN02711 Probable galactinol-- 20.9 2.4E+02 0.0052 27.0 5.6 35 120-155 734-768 (777)
110 COG2063 FlgH Flagellar basal b 20.6 1.6E+02 0.0036 23.8 4.0 16 97-112 159-174 (230)
111 PF10988 DUF2807: Protein of u 20.4 83 0.0018 23.4 2.2 37 68-105 13-49 (181)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.94 E-value=2.4e-26 Score=171.95 Aligned_cols=95 Identities=18% Similarity=0.350 Sum_probs=81.8
Q ss_pred cceeeEe-CCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEE-----EEEEEEEECCcCcccCCcEEEe
Q psy14967 66 GVSNITN-EENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFIS-----RQFKRRYLLPKDVEIEKVTSSL 139 (168)
Q Consensus 66 p~~di~e-~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~-----r~F~r~~~LP~~vd~~~i~A~~ 139 (168)
|++||++ ++++|.|+++|||++++||+|++++|.|+|+|+++..+++..|++ ++|+|+|.||++||.+ +|+|
T Consensus 33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~ 110 (142)
T PRK11597 33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF 110 (142)
T ss_pred CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE
Confidence 6799998 578999999999999999999999999999998765444444543 5799999999999998 7999
Q ss_pred CCCCEEEEEEcCc--CCCCCeeeEEE
Q psy14967 140 SSDGVLTITAPKR--VSTRFYFFSLK 163 (168)
Q Consensus 140 ~~~GiL~I~~PK~--~~~~~~~i~i~ 163 (168)
+||||+|++||. +..++++|+|+
T Consensus 111 -~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 111 -VNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred -cCCEEEEEEeccCccccCCcEEEEC
Confidence 699999999997 55678888875
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.94 E-value=2.9e-26 Score=170.73 Aligned_cols=95 Identities=21% Similarity=0.486 Sum_probs=81.5
Q ss_pred cceeeE-eCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceE-----EEEEEEEEECCcCcccCCcEEEe
Q psy14967 66 GVSNIT-NEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFI-----SRQFKRRYLLPKDVEIEKVTSSL 139 (168)
Q Consensus 66 p~~di~-e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~-----~r~F~r~~~LP~~vd~~~i~A~~ 139 (168)
|++||. +++++|.|+++|||++++||+|++++|.|+|+|+++...++.+|. .++|+|+|.||++||.+ +|+|
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~ 112 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANL 112 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEE
Confidence 568999 489999999999999999999999999999999976654444454 35899999999999999 4999
Q ss_pred CCCCEEEEEEcCc--CCCCCeeeEEE
Q psy14967 140 SSDGVLTITAPKR--VSTRFYFFSLK 163 (168)
Q Consensus 140 ~~~GiL~I~~PK~--~~~~~~~i~i~ 163 (168)
+||||+|++||. +..++++|+|+
T Consensus 113 -~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 113 -VNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred -eCCEEEEEEeCCCccccCCeEEeeC
Confidence 699999999997 45677787774
No 3
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.94 E-value=3.1e-26 Score=158.02 Aligned_cols=84 Identities=44% Similarity=0.911 Sum_probs=78.6
Q ss_pred eeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEE
Q psy14967 68 SNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTI 147 (168)
Q Consensus 68 ~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I 147 (168)
.+|++++++|.|.++||||+++||+|++.++.|+|+|++++.+++.+|..++|+|+|.||++||+++|+|+|++||+|+|
T Consensus 3 ~~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 3 SEVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred ceEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 48999999999999999999999999999999999999876666678999999999999999999999999955999999
Q ss_pred EEcC
Q psy14967 148 TAPK 151 (168)
Q Consensus 148 ~~PK 151 (168)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 4
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.93 E-value=8.6e-26 Score=155.18 Aligned_cols=83 Identities=52% Similarity=0.916 Sum_probs=77.2
Q ss_pred eEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEE
Q psy14967 70 ITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 149 (168)
Q Consensus 70 i~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~ 149 (168)
+.+++++|.|.++||||+|+||+|++.+|.|+|+|+++.+.++.+|.+++|+|+|.||.+||+++|+|+|++||+|+|++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~l 81 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCG 81 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEE
Confidence 67889999999999999999999999999999999987666667899999999999999999999999994499999999
Q ss_pred cCc
Q psy14967 150 PKR 152 (168)
Q Consensus 150 PK~ 152 (168)
||+
T Consensus 82 Pk~ 84 (84)
T cd06498 82 PRK 84 (84)
T ss_pred eCC
Confidence 985
No 5
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.93 E-value=1.1e-25 Score=154.35 Aligned_cols=83 Identities=52% Similarity=0.924 Sum_probs=77.0
Q ss_pred eeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEE
Q psy14967 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 148 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~ 148 (168)
+|.+++++|.|.++||||+++||+|++.++.|+|+|+++...++.+|..++|+|+|.||.+||+++|+|+|++||+|+|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTIS 80 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEE
Confidence 47899999999999999999999999999999999998765566779999999999999999999999999559999999
Q ss_pred EcC
Q psy14967 149 APK 151 (168)
Q Consensus 149 ~PK 151 (168)
+||
T Consensus 81 ~PK 83 (83)
T cd06478 81 GPR 83 (83)
T ss_pred ecC
Confidence 997
No 6
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.9e-25 Score=164.90 Aligned_cols=97 Identities=22% Similarity=0.454 Sum_probs=85.0
Q ss_pred CcceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecc--cCCCce-----EEEEEEEEEECCcCcccCCcEE
Q psy14967 65 SGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEK--EDEHGF-----ISRQFKRRYLLPKDVEIEKVTS 137 (168)
Q Consensus 65 ~p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~--~~~~~~-----~~r~F~r~~~LP~~vd~~~i~A 137 (168)
.|++||++++++|.|.++||||+++||+|+++++.|+|+|+++.. .++.++ ..++|+|+|.||+.||++.++|
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A 119 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKA 119 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceee
Confidence 478999999999999999999999999999999999999998652 234444 3568999999999999999999
Q ss_pred EeCCCCEEEEEEcCcCCC--CCeeeEE
Q psy14967 138 SLSSDGVLTITAPKRVST--RFYFFSL 162 (168)
Q Consensus 138 ~~~~~GiL~I~~PK~~~~--~~~~i~i 162 (168)
+| +||+|+|++||.+++ ++++|.|
T Consensus 120 ~~-~nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 120 KY-KNGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred Ee-eCcEEEEEEeccccccccCceeec
Confidence 99 699999999999988 4555554
No 7
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.93 E-value=4.9e-25 Score=151.09 Aligned_cols=82 Identities=48% Similarity=0.864 Sum_probs=75.7
Q ss_pred eEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEE
Q psy14967 70 ITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 149 (168)
Q Consensus 70 i~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~ 149 (168)
+..++++|.|.++||||+|+||+|++.+|.|+|+|+++.+.++.++..++|+|+|.||.+||+++|+|+|+.||+|+|++
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQA 81 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEe
Confidence 45678999999999999999999999999999999987666667799999999999999999999999994499999999
Q ss_pred cC
Q psy14967 150 PK 151 (168)
Q Consensus 150 PK 151 (168)
||
T Consensus 82 Pr 83 (83)
T cd06476 82 PR 83 (83)
T ss_pred cC
Confidence 97
No 8
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.92 E-value=1.8e-24 Score=149.18 Aligned_cols=83 Identities=53% Similarity=0.883 Sum_probs=77.8
Q ss_pred eeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEE
Q psy14967 68 SNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTI 147 (168)
Q Consensus 68 ~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I 147 (168)
.+|+|++++|.|.++|||++++||+|++.++.|+|+|+++..+++.++..++|+|+|.||++||+++|+|+|++||+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 59999999999999999999999999999999999999876666677888999999999999999999999944999999
Q ss_pred EEc
Q psy14967 148 TAP 150 (168)
Q Consensus 148 ~~P 150 (168)
++|
T Consensus 83 ~lP 85 (86)
T cd06475 83 EAP 85 (86)
T ss_pred Eec
Confidence 998
No 9
>KOG3591|consensus
Probab=99.92 E-value=7.5e-24 Score=163.19 Aligned_cols=99 Identities=56% Similarity=0.839 Sum_probs=92.2
Q ss_pred CcceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCE
Q psy14967 65 SGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 144 (168)
Q Consensus 65 ~p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~Gi 144 (168)
....++..++++|.|.+|+..|+||+|+|++.|+.|.|+|+|+++++++|+++|+|.|+|.||++||+++|+++|+.||+
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGv 141 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGV 141 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCce
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCcCCCC--CeeeEEE
Q psy14967 145 LTITAPKRVSTR--FYFFSLK 163 (168)
Q Consensus 145 L~I~~PK~~~~~--~~~i~i~ 163 (168)
|+|++||..... .+.|+|+
T Consensus 142 LtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 142 LTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EEEEccCCCCcCccceEEeEe
Confidence 999999998776 5555554
No 10
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.91 E-value=8e-24 Score=145.00 Aligned_cols=80 Identities=40% Similarity=0.784 Sum_probs=73.5
Q ss_pred EeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEEc
Q psy14967 71 TNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 150 (168)
Q Consensus 71 ~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~P 150 (168)
-+++++|.|+++||||+||||+|+++++.|+|+|+++.+.++.++..++|+|+|.||.+||.++|+|+|.+||+|+|++|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 36789999999999999999999999999999999876556677888999999999999999999999746999999986
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.91 E-value=6.2e-24 Score=144.94 Aligned_cols=80 Identities=34% Similarity=0.536 Sum_probs=73.0
Q ss_pred eeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEE
Q psy14967 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 148 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~ 148 (168)
||.|++++|.|.++||||+||||+|++++|.|+|+|+++... +...++|+|+|.||.+||+++|+|+|++||+|+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~---~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD---GTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC---CCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEE
Confidence 789999999999999999999999999999999999986432 34678999999999999999999997469999999
Q ss_pred EcC
Q psy14967 149 APK 151 (168)
Q Consensus 149 ~PK 151 (168)
+++
T Consensus 79 ~~~ 81 (81)
T cd06479 79 ARR 81 (81)
T ss_pred ecC
Confidence 985
No 12
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.91 E-value=2.9e-23 Score=146.47 Aligned_cols=94 Identities=32% Similarity=0.564 Sum_probs=76.0
Q ss_pred eeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCce-EE----EEEEEEEECCcCcccCCcEEEeCCCC
Q psy14967 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGF-IS----RQFKRRYLLPKDVEIEKVTSSLSSDG 143 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~-~~----r~F~r~~~LP~~vd~~~i~A~~~~~G 143 (168)
||.+++++|.|.++||||+++||+|+++++.|+|+|++.....+..+ .+ ++|.|+|.||+++|.++|+|.| +||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCC
Confidence 78999999999999999999999999999999999998833333333 33 6999999999999999999999 699
Q ss_pred EEEEEEcCcCCC---CCeeeEEE
Q psy14967 144 VLTITAPKRVST---RFYFFSLK 163 (168)
Q Consensus 144 iL~I~~PK~~~~---~~~~i~i~ 163 (168)
+|+|++||..+. .+++|+|+
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEEccccccCCCCeEEEeC
Confidence 999999999877 45776663
No 13
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.89 E-value=5.9e-23 Score=142.82 Aligned_cols=83 Identities=40% Similarity=0.706 Sum_probs=77.6
Q ss_pred eeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEE
Q psy14967 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 148 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~ 148 (168)
.+..++++|.|.+|+.||+||||+|++.++.|+|+|+++.+++++++++++|+|+|.||++||+++|+|+|++||+|+|+
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 46678899999999999999999999999999999999887667789999999999999999999999999779999999
Q ss_pred EcC
Q psy14967 149 APK 151 (168)
Q Consensus 149 ~PK 151 (168)
+|.
T Consensus 89 aP~ 91 (91)
T cd06480 89 APQ 91 (91)
T ss_pred cCC
Confidence 984
No 14
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.89 E-value=7.1e-23 Score=142.59 Aligned_cols=83 Identities=24% Similarity=0.469 Sum_probs=72.6
Q ss_pred eeeEeCCCeEEEEEeCCCCCCCceEEEEEC-CEEEEEEEEeccc--CCCceE-----EEEEEEEEECCcCcccCCcEEEe
Q psy14967 68 SNITNEENKVQVILDVQQFSPNEISIKTVD-GFILVEGKHEEKE--DEHGFI-----SRQFKRRYLLPKDVEIEKVTSSL 139 (168)
Q Consensus 68 ~di~e~~~~~~v~~~lpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~-----~r~F~r~~~LP~~vd~~~i~A~~ 139 (168)
+||+|++++|.|.++|||++++||+|++++ +.|+|+|++.... +...+. .++|.|+|.||.+||.++|+|+|
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~ 81 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL 81 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence 799999999999999999999999999996 5899999875432 223333 45899999999999999999999
Q ss_pred CCCCEEEEEEcC
Q psy14967 140 SSDGVLTITAPK 151 (168)
Q Consensus 140 ~~~GiL~I~~PK 151 (168)
+||+|+|++||
T Consensus 82 -~nGvL~I~lPK 92 (92)
T cd06472 82 -ENGVLTVTVPK 92 (92)
T ss_pred -ECCEEEEEecC
Confidence 69999999997
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.88 E-value=2.9e-22 Score=138.50 Aligned_cols=80 Identities=36% Similarity=0.592 Sum_probs=70.0
Q ss_pred eCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccC-C-Cc--eEEEEEEEEEECCcCcccCCcEEEeCCCCEEEE
Q psy14967 72 NEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKED-E-HG--FISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTI 147 (168)
Q Consensus 72 e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~-~-~~--~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I 147 (168)
+.+++|.|.++||||+++||+|++++|.|+|+|+++.... + .. +..++|+|+|.||++||.++|+|+|++||+|+|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I 83 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHI 83 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEE
Confidence 5678999999999999999999999999999998765432 2 23 345899999999999999999999955999999
Q ss_pred EEcC
Q psy14967 148 TAPK 151 (168)
Q Consensus 148 ~~PK 151 (168)
++|+
T Consensus 84 ~~P~ 87 (87)
T cd06481 84 RAPR 87 (87)
T ss_pred EcCC
Confidence 9995
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.88 E-value=3.1e-22 Score=136.92 Aligned_cols=77 Identities=60% Similarity=0.975 Sum_probs=70.9
Q ss_pred CCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCC-CEEEEEEcC
Q psy14967 74 ENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSD-GVLTITAPK 151 (168)
Q Consensus 74 ~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~-GiL~I~~PK 151 (168)
+++|.|.++||||+++||+|+++++.|+|+|+++...+..++..++|.|+|.||.+||+++++|+|+ | |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~-~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLS-SDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeC-CCcEEEEEecC
Confidence 3699999999999999999999999999999987765446688899999999999999999999995 6 999999997
No 17
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.88 E-value=3.7e-22 Score=139.04 Aligned_cols=83 Identities=29% Similarity=0.598 Sum_probs=72.7
Q ss_pred ceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEeccc---C-CCceE-----EEEEEEEEECCcCcccCCcEE
Q psy14967 67 VSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKE---D-EHGFI-----SRQFKRRYLLPKDVEIEKVTS 137 (168)
Q Consensus 67 ~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~---~-~~~~~-----~r~F~r~~~LP~~vd~~~i~A 137 (168)
.+||++++++|.|.++|||++++||+|+++++.|+|+|+++... + +..+. .++|.|+|.|| ++|.++|+|
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 58999999999999999999999999999999999999986532 1 12243 35799999999 799999999
Q ss_pred EeCCCCEEEEEEcC
Q psy14967 138 SLSSDGVLTITAPK 151 (168)
Q Consensus 138 ~~~~~GiL~I~~PK 151 (168)
+| +||+|+|++||
T Consensus 81 ~~-~dGvL~I~lPK 93 (93)
T cd06471 81 KY-ENGVLKITLPK 93 (93)
T ss_pred EE-ECCEEEEEEcC
Confidence 99 69999999998
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.87 E-value=1.8e-21 Score=134.38 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=70.2
Q ss_pred eCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccC---CCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEE
Q psy14967 72 NEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKED---EHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 148 (168)
Q Consensus 72 e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~---~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~ 148 (168)
.++++|+|.++|||++++||+|++++|.|+|+|+++..+. ...+..++|.|+|.||.+||.++|+|+|+++|+|+|.
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 5789999999999999999999999999999999865432 2346778999999999999999999999766799999
Q ss_pred Ec
Q psy14967 149 AP 150 (168)
Q Consensus 149 ~P 150 (168)
.|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 87
No 19
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.86 E-value=4.6e-21 Score=133.10 Aligned_cols=83 Identities=28% Similarity=0.530 Sum_probs=71.8
Q ss_pred cceeeEeCC-CeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccC-CCceE-----EEEEEEEEECCcCcccCCcEEE
Q psy14967 66 GVSNITNEE-NKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKED-EHGFI-----SRQFKRRYLLPKDVEIEKVTSS 138 (168)
Q Consensus 66 p~~di~e~~-~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~-~~~~~-----~r~F~r~~~LP~~vd~~~i~A~ 138 (168)
|++||++++ ++|+|.++|||++++||+|+++++.|+|+|+++.... +..|. .++|.|+|.||.+||.+ +|+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~ 78 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAE 78 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeE
Confidence 468999975 9999999999999999999999999999999876542 33343 46899999999999975 999
Q ss_pred eCCCCEEEEEEcC
Q psy14967 139 LSSDGVLTITAPK 151 (168)
Q Consensus 139 ~~~~GiL~I~~PK 151 (168)
| +||+|+|++|+
T Consensus 79 ~-~~GvL~I~l~~ 90 (90)
T cd06470 79 L-ENGLLTIDLER 90 (90)
T ss_pred E-eCCEEEEEEEC
Confidence 9 69999999985
No 20
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.82 E-value=7.7e-20 Score=124.55 Aligned_cols=82 Identities=34% Similarity=0.608 Sum_probs=72.8
Q ss_pred eeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCC------CceEEEEEEEEEECCcCcccCCcEEEeCCC
Q psy14967 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDE------HGFISRQFKRRYLLPKDVEIEKVTSSLSSD 142 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~------~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~ 142 (168)
++.+++++|.+.++|||+++++|+|++.++.|.|+|++...... .+...+.|.|+|.||..+|.++++|.| .|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~-~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-EN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE-eC
Confidence 47889999999999999999999999999999999998765332 223457899999999999999999999 59
Q ss_pred CEEEEEEcC
Q psy14967 143 GVLTITAPK 151 (168)
Q Consensus 143 GiL~I~~PK 151 (168)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 21
>KOG0710|consensus
Probab=99.61 E-value=9.6e-16 Score=120.54 Aligned_cols=99 Identities=19% Similarity=0.439 Sum_probs=82.5
Q ss_pred CcceeeEeCCCeEEEEEeCCCCCCCceEEEEECC-EEEEEEEEecccCC----Cce-----EEEEEEEEEECCcCcccCC
Q psy14967 65 SGVSNITNEENKVQVILDVQQFSPNEISIKTVDG-FILVEGKHEEKEDE----HGF-----ISRQFKRRYLLPKDVEIEK 134 (168)
Q Consensus 65 ~p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~-~L~I~g~~~~~~~~----~~~-----~~r~F~r~~~LP~~vd~~~ 134 (168)
.+..+|.+..+.|.+.+++||+..++++|+++++ +|+|+|+++...++ ..+ ..+.|.|++.||++++.++
T Consensus 84 ~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred cCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 4677899999999999999999999999999987 79999987654322 122 2358999999999999999
Q ss_pred cEEEeCCCCEEEEEEcCcCCC--CCeeeEEEe
Q psy14967 135 VTSSLSSDGVLTITAPKRVST--RFYFFSLKL 164 (168)
Q Consensus 135 i~A~~~~~GiL~I~~PK~~~~--~~~~i~i~~ 164 (168)
|+|.| +||+|+|++||..+. +++...|.+
T Consensus 164 ikA~~-~nGVL~VvvpK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 164 IKAEM-ENGVLTVVVPKLEPLLKKPKVRQIAI 194 (196)
T ss_pred HHHHh-hCCeEEEEEecccccccCCccceeec
Confidence 99999 699999999999984 555555443
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.60 E-value=1.2e-14 Score=95.50 Aligned_cols=80 Identities=34% Similarity=0.562 Sum_probs=71.4
Q ss_pred eEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEE
Q psy14967 70 ITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITA 149 (168)
Q Consensus 70 i~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~ 149 (168)
++++++.|.|++++||+.+++++|++.++.|.|+|++..... .+...+.|.+.+.||..+|+++++|.+ .+|+|+|++
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~-~~~~~~~~~~~~~L~~~i~~~~~~~~~-~~~~l~i~l 78 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE-RERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITL 78 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc-ceEeeeeEEEEEECCCCcCHHHCEEEE-ECCEEEEEE
Confidence 357789999999999999999999999999999998765433 445568999999999999999999999 599999999
Q ss_pred cC
Q psy14967 150 PK 151 (168)
Q Consensus 150 PK 151 (168)
||
T Consensus 79 ~K 80 (80)
T cd00298 79 PK 80 (80)
T ss_pred cC
Confidence 97
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.34 E-value=6.8e-12 Score=84.01 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=64.6
Q ss_pred EeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEEc
Q psy14967 71 TNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 150 (168)
Q Consensus 71 ~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~P 150 (168)
+++++.+.|++++||+++++++|+++++.|.|+| ..|.+.+.||..||+++.++++ .+|.|.|+++
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-------------~~~~~~~~l~~~I~~e~~~~~~-~~~~l~i~L~ 67 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-------------PPYLFELDLAAPIDDEKSSAKI-GNGVLVFTLV 67 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcC-------------CCEEEEEeCcccccccccEEEE-eCCEEEEEEE
Confidence 5788999999999999999999999999999988 1488999999999999999999 5999999999
Q ss_pred CcCC
Q psy14967 151 KRVS 154 (168)
Q Consensus 151 K~~~ 154 (168)
|.++
T Consensus 68 K~~~ 71 (78)
T cd06469 68 KKEP 71 (78)
T ss_pred eCCC
Confidence 9765
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.08 E-value=1e-09 Score=84.34 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=64.3
Q ss_pred CCcceeeEeCCC-eEEEEEeCCCCCCCc-eEEEEEC--CEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEe
Q psy14967 64 NSGVSNITNEEN-KVQVILDVQQFSPNE-ISIKTVD--GFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSL 139 (168)
Q Consensus 64 ~~p~~di~e~~~-~~~v~~~lpG~~~ed-i~V~v~~--~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~ 139 (168)
..+.+++.+.++ +++|.++|||+++++ |+|.++. +.|+|+.. ..+.+++.||.. +++.++++|
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~------------~~~~krv~L~~~-~~e~~~~t~ 156 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG------------EKYLKRVALPWP-DPEITSATF 156 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC------------CceEeeEecCCC-ccceeeEEE
Confidence 457789998888 699999999999888 9999985 55555432 236789999977 789999999
Q ss_pred CCCCEEEEEEcCcCCCCC
Q psy14967 140 SSDGVLTITAPKRVSTRF 157 (168)
Q Consensus 140 ~~~GiL~I~~PK~~~~~~ 157 (168)
+||||+|++-+.++...
T Consensus 157 -nNgILEIri~~~~~~~~ 173 (177)
T PF05455_consen 157 -NNGILEIRIRRTEESSG 173 (177)
T ss_pred -eCceEEEEEeecCCCCC
Confidence 69999999988776543
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.05 E-value=2e-09 Score=71.89 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=66.6
Q ss_pred EeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEEc
Q psy14967 71 TNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 150 (168)
Q Consensus 71 ~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~P 150 (168)
+++++.+.|.+.+||..++++.|.+.++.|.|++.... ...|...+.|+..|++++.++++ .+|.|.|+++
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~--------~~~~~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~ 72 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGG--------GKEYLLEGELFGPIDPEESKWTV-EDRKIEITLK 72 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCC--------CCceEEeeEccCccchhhcEEEE-eCCEEEEEEE
Confidence 46789999999999999999999999999999997431 13678889999999999999999 5999999999
Q ss_pred CcCC
Q psy14967 151 KRVS 154 (168)
Q Consensus 151 K~~~ 154 (168)
|+.+
T Consensus 73 K~~~ 76 (84)
T cd06463 73 KKEP 76 (84)
T ss_pred ECCC
Confidence 9876
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.80 E-value=3.2e-08 Score=66.81 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=67.6
Q ss_pred eeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEE
Q psy14967 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 148 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~ 148 (168)
|++++++.+.|.+.+||+.++++.|.+.++.|.|++... . .+.|...+.|+..|++++.++.+ .+|.|.|+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~----~----~~~~~~~~~L~~~I~~~~s~~~~-~~~~vei~ 71 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP----G----GSEYQLELDLFGPIDPEQSKVSV-LPTKVEIT 71 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC----C----CCeEEEecccccccCchhcEEEE-eCeEEEEE
Confidence 467889999999999999999999999999999998643 0 13678889999999999999999 59999999
Q ss_pred EcCcCC
Q psy14967 149 APKRVS 154 (168)
Q Consensus 149 ~PK~~~ 154 (168)
+.|..+
T Consensus 72 L~K~~~ 77 (84)
T cd06466 72 LKKAEP 77 (84)
T ss_pred EEcCCC
Confidence 999875
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.38 E-value=1e-05 Score=53.21 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=63.9
Q ss_pred cceeeEeCCCeEEEEEeCCCC--CCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCC
Q psy14967 66 GVSNITNEENKVQVILDVQQF--SPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDG 143 (168)
Q Consensus 66 p~~di~e~~~~~~v~~~lpG~--~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~G 143 (168)
|..+++++++.+.|.+.+++. ++++++|.+.++.|.|+...... ..|.-...|...|+++..+..+ .++
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~--------~~~~~~~~L~~~I~~~~s~~~~-~~~ 71 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG--------KEYLLEGELFGEIDPDESTWKV-KDN 71 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS--------CEEEEEEEBSS-BECCCEEEEE-ETT
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC--------ceEEEEEEEeeeEcchhcEEEE-ECC
Confidence 346889999999999999665 59999999999999999753321 3677788899999999999999 499
Q ss_pred EEEEEEcC
Q psy14967 144 VLTITAPK 151 (168)
Q Consensus 144 iL~I~~PK 151 (168)
.|.|+|.|
T Consensus 72 ~i~i~L~K 79 (79)
T PF04969_consen 72 KIEITLKK 79 (79)
T ss_dssp EEEEEEEB
T ss_pred EEEEEEEC
Confidence 99999986
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.18 E-value=3.9e-05 Score=54.52 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=67.0
Q ss_pred cceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEE
Q psy14967 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 145 (168)
Q Consensus 66 p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL 145 (168)
|..+.+.+.+.+.|.+.+||. ++++|.+..+.|.|++.... ++ +.|.-.+.|...|++++.+.++ .++.|
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~--~~-----~~y~~~~~L~~~I~pe~s~~~v-~~~kv 70 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG--GG-----KKYEFDLEFYKEIDPEESKYKV-TGRQI 70 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC--CC-----eeEEEEeEhhhhccccccEEEe-cCCeE
Confidence 357889999999999999998 89999999999999985321 11 3577788999999999999999 58999
Q ss_pred EEEEcCcC
Q psy14967 146 TITAPKRV 153 (168)
Q Consensus 146 ~I~~PK~~ 153 (168)
.|+|.|..
T Consensus 71 eI~L~K~~ 78 (108)
T cd06465 71 EFVLRKKE 78 (108)
T ss_pred EEEEEECC
Confidence 99999987
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.13 E-value=2.5e-05 Score=52.88 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=65.1
Q ss_pred eeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEE
Q psy14967 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTIT 148 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~ 148 (168)
|.+++++.+.|++.++|+.++++.|++.++.|.+++... ++ ..|.-.+.|...|++++.+...+ .+.+.|.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~ 71 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLP---SG-----NDYSLKLHLLHPIVPEQSSYKIL-STKIEIK 71 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECC---CC-----CcEEEeeecCceecchhcEEEEe-CcEEEEE
Confidence 457788999999999999999999999999999998642 11 24667789999999999999985 8889999
Q ss_pred EcCcCC
Q psy14967 149 APKRVS 154 (168)
Q Consensus 149 ~PK~~~ 154 (168)
|.|++.
T Consensus 72 L~K~~~ 77 (84)
T cd06489 72 LKKTEA 77 (84)
T ss_pred EEcCCC
Confidence 999753
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.97 E-value=5e-05 Score=63.44 Aligned_cols=66 Identities=15% Similarity=0.315 Sum_probs=58.3
Q ss_pred CCeEEEEEeCCCC-CCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeC-CCCEEEEEEc
Q psy14967 74 ENKVQVILDVQQF-SPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLS-SDGVLTITAP 150 (168)
Q Consensus 74 ~~~~~v~~~lpG~-~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~-~~GiL~I~~P 150 (168)
.+.++|+++|||+ +..+|+|.|.++.|.|..... .|.=.+.||..||.+..+|.|. +.++|+|++|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~-----------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP-----------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC-----------ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 5889999999999 899999999999999987522 4667799999999999999985 3499999998
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.80 E-value=0.00042 Score=47.39 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=67.0
Q ss_pred eeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEE
Q psy14967 68 SNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTI 147 (168)
Q Consensus 68 ~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I 147 (168)
-|.+.+++.+.|.+.+.|..+++++|.++++.|.|+..... + ..|.-.+.|-..|++++.+... ..+.+.|
T Consensus 3 ~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~---~-----~~y~~~l~L~~~I~~~~s~~~v-~~~kvei 73 (87)
T cd06488 3 HDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG---N-----KEFQLDIELWGVIDVEKSSVNM-LPTKVEI 73 (87)
T ss_pred ccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC---C-----ceEEEEeeccceEChhHcEEEe-cCcEEEE
Confidence 47899999999999999999999999999999998765331 1 2577788999999999988888 4999999
Q ss_pred EEcCcCC
Q psy14967 148 TAPKRVS 154 (168)
Q Consensus 148 ~~PK~~~ 154 (168)
++.|+++
T Consensus 74 ~L~K~~~ 80 (87)
T cd06488 74 KLRKAEP 80 (87)
T ss_pred EEEeCCC
Confidence 9999875
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.77 E-value=0.00024 Score=47.79 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=60.4
Q ss_pred eeEeCCCeEEEEEeCC-CCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCC-CEEE
Q psy14967 69 NITNEENKVQVILDVQ-QFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSD-GVLT 146 (168)
Q Consensus 69 di~e~~~~~~v~~~lp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~-GiL~ 146 (168)
..+++++.+.|.+.+| |+.++|++|++.++.|.|+.+.. ...-.-.|...||++...-.+ .+ ..|.
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~-----------~~~l~~~L~~~I~~~~s~w~~-~~~~~v~ 69 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGG-----------EPLLDGELYAKVKVDESTWTL-EDGKLLE 69 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCC-----------CceEcCcccCceeEcCCEEEE-eCCCEEE
Confidence 3567889999999997 78999999999999999987421 111223689999999998888 48 9999
Q ss_pred EEEcCcCC
Q psy14967 147 ITAPKRVS 154 (168)
Q Consensus 147 I~~PK~~~ 154 (168)
|+++|+++
T Consensus 70 i~L~K~~~ 77 (85)
T cd06467 70 ITLEKRNE 77 (85)
T ss_pred EEEEECCC
Confidence 99999876
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.76 E-value=0.0005 Score=47.09 Aligned_cols=78 Identities=12% Similarity=0.184 Sum_probs=64.2
Q ss_pred eeeEeCCCeEEEEEeCCCCCC---CceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEE-CCcCcccCCcEEEeCCCC
Q psy14967 68 SNITNEENKVQVILDVQQFSP---NEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYL-LPKDVEIEKVTSSLSSDG 143 (168)
Q Consensus 68 ~di~e~~~~~~v~~~lpG~~~---edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~-LP~~vd~~~i~A~~~~~G 143 (168)
-+.+++++.+.|.+.+|+..+ ++++|++..+.|.|++.... + ..|.-.+. |-..|++++.+..++ .+
T Consensus 4 y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~---~-----~~~~~~~~~L~~~I~~e~s~~~~~-~~ 74 (92)
T cd06468 4 YAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN---G-----KNYRFTINRLLKKIDPEKSSFKVK-TD 74 (92)
T ss_pred eeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC---C-----cEEEEEehHhhCccCccccEEEEe-CC
Confidence 367889999999999999887 99999999999999985311 1 23444554 899999999999994 89
Q ss_pred EEEEEEcCcCC
Q psy14967 144 VLTITAPKRVS 154 (168)
Q Consensus 144 iL~I~~PK~~~ 154 (168)
-+.|+|.|+++
T Consensus 75 ki~i~L~K~~~ 85 (92)
T cd06468 75 RIVITLAKKKE 85 (92)
T ss_pred EEEEEEEeCCC
Confidence 99999999875
No 34
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.70 E-value=0.0011 Score=47.22 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=64.3
Q ss_pred cceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEE
Q psy14967 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 145 (168)
Q Consensus 66 p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL 145 (168)
|.++.++..+.+.|++++|+ .+|++|+++++.|.++|... ++. .|.-.+.|=..|++++-+...+ .-.+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~---~g~-----~y~~~l~l~~~I~pe~Sk~~v~-~r~v 70 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG---DNV-----KIYNEIELYDRVDPNDSKHKRT-DRSI 70 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC---CCc-----EEEEEEEeecccCcccCeEEeC-CceE
Confidence 56889999999999999999 68999999999999998431 111 3556778889999998888874 7778
Q ss_pred EEEEcCcCCC
Q psy14967 146 TITAPKRVST 155 (168)
Q Consensus 146 ~I~~PK~~~~ 155 (168)
.|.+.|+++.
T Consensus 71 e~~L~K~~~~ 80 (106)
T cd00237 71 LCCLRKGKEG 80 (106)
T ss_pred EEEEEeCCCC
Confidence 8899988643
No 35
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.60 E-value=0.00089 Score=45.48 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=59.3
Q ss_pred eeEeCCCeEEEEEeCC-CCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCC-EEE
Q psy14967 69 NITNEENKVQVILDVQ-QFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDG-VLT 146 (168)
Q Consensus 69 di~e~~~~~~v~~~lp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~G-iL~ 146 (168)
+.+.+.+.+.|.+.+| |..++|++|++..+.|.|..+.. . .+ -.-.|...|+++.-.=++ .+| .|.
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~-----~-----~~-~~g~L~~~I~~d~Stw~i-~~~~~l~ 69 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQ-----A-----PL-LEGKLYSSIDHESSTWII-KENKSLE 69 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCC-----C-----eE-EeCcccCcccccCcEEEE-eCCCEEE
Confidence 4578899999999996 99999999999999999976311 1 11 233789999999888777 466 699
Q ss_pred EEEcCcCCC
Q psy14967 147 ITAPKRVST 155 (168)
Q Consensus 147 I~~PK~~~~ 155 (168)
|.+.|+++.
T Consensus 70 i~L~K~~~~ 78 (85)
T cd06493 70 VSLIKKDEG 78 (85)
T ss_pred EEEEECCCC
Confidence 999998754
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.91 E-value=0.014 Score=40.64 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=60.9
Q ss_pred cceeeEeCCCeEEEEEeCC-CCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCE
Q psy14967 66 GVSNITNEENKVQVILDVQ-QFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 144 (168)
Q Consensus 66 p~~di~e~~~~~~v~~~lp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~Gi 144 (168)
+....+.+.+.+.|++.+| |.++.|+.|++..+.|.|.-+.+ .+..+ .|...|+++.-.=++ ++|-
T Consensus 6 ~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~------~~l~G------~L~~~I~~destWtl-ed~k 72 (93)
T cd06494 6 PWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ------EVLKG------KLFDSVVADECTWTL-EDRK 72 (93)
T ss_pred CCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE------EEEcC------cccCccCcccCEEEE-ECCc
Confidence 3457899999999999987 89999999999999999986211 02222 678899999888888 4665
Q ss_pred -EEEEEcCcCCC
Q psy14967 145 -LTITAPKRVST 155 (168)
Q Consensus 145 -L~I~~PK~~~~ 155 (168)
|.|.|.|....
T Consensus 73 ~l~I~L~K~~~~ 84 (93)
T cd06494 73 LIRIVLTKSNRD 84 (93)
T ss_pred EEEEEEEeCCCC
Confidence 89999997643
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.66 E-value=0.013 Score=49.90 Aligned_cols=80 Identities=10% Similarity=0.050 Sum_probs=67.0
Q ss_pred cceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEE
Q psy14967 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 145 (168)
Q Consensus 66 p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL 145 (168)
+..+++.+++.+.|.+.+.|+.++++.|++.++.|.|+..... + ..|.-.+.|-..|++++.+...+ .-.+
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~---~-----~~y~~~~~L~~~I~p~~s~~~v~-~~Ki 227 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPG---E-----DAYHLQPRLFGKIIPDKCKYEVL-STKI 227 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCC---C-----cceeecccccccccccccEEEEe-cceE
Confidence 4578999999999999999999999999999999999875321 1 23555679999999999999985 6699
Q ss_pred EEEEcCcCC
Q psy14967 146 TITAPKRVS 154 (168)
Q Consensus 146 ~I~~PK~~~ 154 (168)
.|+|.|.++
T Consensus 228 ei~l~K~~~ 236 (356)
T PLN03088 228 EIRLAKAEP 236 (356)
T ss_pred EEEEecCCC
Confidence 999988763
No 38
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=96.64 E-value=0.00045 Score=43.86 Aligned_cols=34 Identities=44% Similarity=0.753 Sum_probs=26.1
Q ss_pred cCCCcCcCccCCCCChhhhhhcCCCCCccccccch
Q psy14967 5 PLLFRDWWDDFDRPSRLLDQHFGLGLRRDDLLSNW 39 (168)
Q Consensus 5 P~~~~~~~~~~~~~~r~~d~~f~~~~~~~d~~~~~ 39 (168)
||+.|++|. +..+.|.+|+.||+++...|++...
T Consensus 8 Pw~rR~~~~-~~~PsRiFDQ~FGEgL~d~DLf~~~ 41 (59)
T PF00525_consen 8 PWFRRPLWP-FFFPSRIFDQNFGEGLFDSDLFPSS 41 (59)
T ss_dssp HHHHGGGSS-SS-SCHHHCTTSEESSTTTT---BT
T ss_pred ccccccccc-ccCchhhHHHhhccccCHhhhcccc
Confidence 677777777 8899999999999999999998765
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.52 E-value=0.069 Score=36.44 Aligned_cols=77 Identities=10% Similarity=0.160 Sum_probs=56.7
Q ss_pred eeEeCCCeEEEEEeCCC--CCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeC-CCCEE
Q psy14967 69 NITNEENKVQVILDVQQ--FSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLS-SDGVL 145 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG--~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~-~~GiL 145 (168)
|++.+++.+.|.+...+ ...+++.+....+.|.|+-... + ..|...+.|=..|+++. +..+. .-|.+
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~----~-----~~~~~~~~L~~~I~~~~-~~~~~~~~~KV 71 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG----D-----KSYLLHLDLSNEVQWPC-EVRISTETGKI 71 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC----C-----ceEEEeeeccccCCCCc-EEEEcccCceE
Confidence 67899999999999885 4555566666677898876432 1 24677778988998775 55542 26899
Q ss_pred EEEEcCcCCC
Q psy14967 146 TITAPKRVST 155 (168)
Q Consensus 146 ~I~~PK~~~~ 155 (168)
.|++.|+++.
T Consensus 72 EI~L~K~e~~ 81 (87)
T cd06490 72 ELVLKKKEPE 81 (87)
T ss_pred EEEEEcCCCC
Confidence 9999998754
No 40
>KOG1309|consensus
Probab=95.50 E-value=0.055 Score=42.08 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=57.1
Q ss_pred cceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEE
Q psy14967 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 145 (168)
Q Consensus 66 p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL 145 (168)
.+.|.+++...++|.+..+|+..+|+.|.+.++.|.|..+-... ..|.-...|-..|.+++.+-... ---+
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g--------~~~~l~~~L~~~I~pe~~s~k~~-stKV 74 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSG--------SEYNLQLKLYHEIIPEKSSFKVF-STKV 74 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCc--------hhhhhhHHhcccccccceeeEee-eeeE
Confidence 45699999999999999999999999999999999888764421 12333334556666666655552 5567
Q ss_pred EEEEcCc
Q psy14967 146 TITAPKR 152 (168)
Q Consensus 146 ~I~~PK~ 152 (168)
.|+|+|.
T Consensus 75 EI~L~K~ 81 (196)
T KOG1309|consen 75 EITLAKA 81 (196)
T ss_pred EEEeccc
Confidence 7777764
No 41
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.20 E-value=0.23 Score=33.85 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=54.1
Q ss_pred EeCCCeEEEEEeCC-C--CCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCC-EEE
Q psy14967 71 TNEENKVQVILDVQ-Q--FSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDG-VLT 146 (168)
Q Consensus 71 ~e~~~~~~v~~~lp-G--~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~G-iL~ 146 (168)
..+.+++.|++.+| | .++.|++|++..+.|.|.-+.+. -+..+ .|...|+++.-.=++ ++| .|.
T Consensus 4 ~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~-----~~i~G------~L~~~V~~des~Wtl-ed~~~l~ 71 (87)
T cd06492 4 TQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQP-----PIIDG------ELYNEVKVEESSWLI-EDGKVVT 71 (87)
T ss_pred EeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCc-----eEEeC------cccCcccccccEEEE-eCCCEEE
Confidence 45677889999986 3 89999999999999999653211 12222 567888988777778 676 899
Q ss_pred EEEcCcCC
Q psy14967 147 ITAPKRVS 154 (168)
Q Consensus 147 I~~PK~~~ 154 (168)
|+|-|...
T Consensus 72 i~L~K~~~ 79 (87)
T cd06492 72 VNLEKINK 79 (87)
T ss_pred EEEEECCC
Confidence 99998753
No 42
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.41 E-value=1.3 Score=31.17 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=57.6
Q ss_pred eeeEeCCCeEEEEEeCC-C-CCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCE-
Q psy14967 68 SNITNEENKVQVILDVQ-Q-FSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGV- 144 (168)
Q Consensus 68 ~di~e~~~~~~v~~~lp-G-~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~Gi- 144 (168)
-....+.+.+.|++.+| | .+..|+.|++..+.|.|.-+.... +.-+..+ .|...|+.+.-.=++ ++|-
T Consensus 7 Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~--~~~~i~G------~L~~~V~~des~Wtl-ed~~~ 77 (102)
T cd06495 7 YTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGG--EKVLMEG------EFTHKINTENSLWSL-EPGKC 77 (102)
T ss_pred eEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCC--CceEEeC------cccCcccCccceEEE-eCCCE
Confidence 46788999999999999 5 468999999999999998752100 0112333 577888888777778 6765
Q ss_pred EEEEEcCcC
Q psy14967 145 LTITAPKRV 153 (168)
Q Consensus 145 L~I~~PK~~ 153 (168)
|.|+|-|..
T Consensus 78 l~I~L~K~~ 86 (102)
T cd06495 78 VLLSLSKCS 86 (102)
T ss_pred EEEEEEECC
Confidence 899999874
No 43
>KOG3158|consensus
Probab=87.53 E-value=3.1 Score=32.27 Aligned_cols=79 Identities=8% Similarity=0.114 Sum_probs=59.7
Q ss_pred cceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEE
Q psy14967 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 145 (168)
Q Consensus 66 p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL 145 (168)
|.+-+.+..+-+.+++.|+. ..+..|.++..+|+++|+-.. +. ..+.-.|.|=..||+++.+-+-+ +.+
T Consensus 8 p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~--d~-----~~~~~~ief~~eIdpe~sk~k~~--~r~ 76 (180)
T KOG3158|consen 8 PEVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGA--DN-----HKYENEIEFFDEIDPEKSKHKRT--SRS 76 (180)
T ss_pred CcchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCC--Cc-----eeeEEeeehhhhcCHhhcccccc--ceE
Confidence 55777888899999999985 567778888889999997431 11 25677789999999999888763 666
Q ss_pred EEEEcCcCCC
Q psy14967 146 TITAPKRVST 155 (168)
Q Consensus 146 ~I~~PK~~~~ 155 (168)
...++++...
T Consensus 77 if~i~~K~e~ 86 (180)
T KOG3158|consen 77 IFCILRKKEL 86 (180)
T ss_pred EEEEEEcccc
Confidence 6666665544
No 44
>KOG1667|consensus
Probab=85.11 E-value=5.2 Score=32.98 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=71.2
Q ss_pred ceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEE
Q psy14967 67 VSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLT 146 (168)
Q Consensus 67 ~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~ 146 (168)
+-|+..++..+.|.+...|.-|+.-.|+..+-.|.|+-.... + .++|.-.+.|=.-|+.++.++.+. .--..
T Consensus 216 R~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~--g-----na~fd~d~kLwgvvnve~s~v~m~-~tkVE 287 (320)
T KOG1667|consen 216 RHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGF--G-----NASFDLDYKLWGVVNVEESSVVMG-ETKVE 287 (320)
T ss_pred hhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecC--C-----CceeeccceeeeeechhhceEEee-cceEE
Confidence 357899999999999999999999999999999888866531 1 258888899999999999999995 89999
Q ss_pred EEEcCcCCCCCe
Q psy14967 147 ITAPKRVSTRFY 158 (168)
Q Consensus 147 I~~PK~~~~~~~ 158 (168)
|+|+|+++..=.
T Consensus 288 Isl~k~ep~sWa 299 (320)
T KOG1667|consen 288 ISLKKAEPGSWA 299 (320)
T ss_pred EEEeccCCCCcc
Confidence 999999876543
No 45
>PF14913 DPCD: DPCD protein family
Probab=83.73 E-value=10 Score=29.84 Aligned_cols=76 Identities=12% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCcceeeEeCCCeEEEEE-eCCCCCCCceEEEEEC--CEEEEEEEEecccCCCceEEEEEEEEEECCcC------cccCC
Q psy14967 64 NSGVSNITNEENKVQVIL-DVQQFSPNEISIKTVD--GFILVEGKHEEKEDEHGFISRQFKRRYLLPKD------VEIEK 134 (168)
Q Consensus 64 ~~p~~di~e~~~~~~v~~-~lpG~~~edi~V~v~~--~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~------vd~~~ 134 (168)
.+|..--.++...|+.++ +||. ..+--+|++++ +.++|+-. ...|.++|.+|+- .+.+.
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTt-----------NKKYyKk~~IPDl~R~~l~l~~~~ 152 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTT-----------NKKYYKKFSIPDLDRCGLPLEQSA 152 (194)
T ss_pred CCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECc-----------CccceeEecCCcHHhhCCCcchhh
Confidence 356666788888999988 8886 77878888874 56888743 1478888999963 36778
Q ss_pred cEEEeCCCCEEEEEEcCc
Q psy14967 135 VTSSLSSDGVLTITAPKR 152 (168)
Q Consensus 135 i~A~~~~~GiL~I~~PK~ 152 (168)
++... .|..|.|+-.|.
T Consensus 153 ls~~h-~nNTLIIsYkKP 169 (194)
T PF14913_consen 153 LSFAH-QNNTLIISYKKP 169 (194)
T ss_pred ceeee-ecCeEEEEecCc
Confidence 88888 699999998764
No 46
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=82.64 E-value=17 Score=26.72 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=50.4
Q ss_pred cceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCce--E--EEEEEEEEECCcCcccCCcEEEeCC
Q psy14967 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGF--I--SRQFKRRYLLPKDVEIEKVTSSLSS 141 (168)
Q Consensus 66 p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~--~--~r~F~r~~~LP~~vd~~~i~A~~~~ 141 (168)
..+.|...++ ..+++.. ..+.++++.+++.|.|+.+....--..++ . ...-.-.+.||++...++++... .
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~-~ 140 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKT-S 140 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEe-c
Confidence 4456665444 3344444 21268999999999999872211001122 1 12356678999999888999998 5
Q ss_pred CCEEEEEE
Q psy14967 142 DGVLTITA 149 (168)
Q Consensus 142 ~GiL~I~~ 149 (168)
+|-++|.=
T Consensus 141 ~G~i~i~~ 148 (166)
T PF13349_consen 141 SGDITIED 148 (166)
T ss_pred cccEEEEc
Confidence 99998764
No 47
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=78.87 E-value=3.2 Score=28.33 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=29.5
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcCC
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRVS 154 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~~ 154 (168)
.|.-...|| +++.++|+.++ .+|.|+|+.-++..
T Consensus 9 ~~~v~adlP-G~~kedI~V~v-~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKV-KDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEecc
Confidence 677888999 89999999999 59999999977543
No 48
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=78.02 E-value=5.3 Score=26.99 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=27.0
Q ss_pred eEEEEEeCC-CCCCCceEEEE-ECCEEEEEEE
Q psy14967 76 KVQVILDVQ-QFSPNEISIKT-VDGFILVEGK 105 (168)
Q Consensus 76 ~~~v~~~lp-G~~~edi~V~v-~~~~L~I~g~ 105 (168)
.|.=++.|| +++++.|+=++ ++|.|+|.|+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 677789999 89999999997 7999999985
No 49
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=77.54 E-value=8.8 Score=26.73 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=33.2
Q ss_pred CCcceeeEeCCCeEEEEEeCCCC-----CCCceEEEEECCEEEEEE
Q psy14967 64 NSGVSNITNEENKVQVILDVQQF-----SPNEISIKTVDGFILVEG 104 (168)
Q Consensus 64 ~~p~~di~e~~~~~~v~~~lpG~-----~~edi~V~v~~~~L~I~g 104 (168)
..|.+.|+.+++.|.|.+--+.. +++...|+-+++.+-|.-
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~~ 69 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIET 69 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEec
Confidence 35889999999999998866553 788888888888887764
No 50
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=74.55 E-value=15 Score=24.56 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=29.9
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcCCC
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRVST 155 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~~~ 155 (168)
.|.-.+.|| +++++.|+.++ .+|.|+|+.-|+...
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v-~~~~L~I~ger~~~~ 43 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTT-SNNQIEVHAEKLASD 43 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEeccC
Confidence 688889999 89999999999 699999999765443
No 51
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=73.73 E-value=7.2 Score=26.08 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=28.4
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCc
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 152 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~ 152 (168)
.|.-.+.|| +++++.|+..+ .+|.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEc
Confidence 688899999 99999999999 599999999654
No 52
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=73.52 E-value=7.4 Score=24.13 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=19.2
Q ss_pred CCCCCCceEEEEECCEEEEEEEEe
Q psy14967 84 QQFSPNEISIKTVDGFILVEGKHE 107 (168)
Q Consensus 84 pG~~~edi~V~v~~~~L~I~g~~~ 107 (168)
++++..+|.|.+.++.++++|.-.
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~ 35 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVP 35 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEES
T ss_pred cccCCCeEEEEEECCEEEEEeeCc
Confidence 367777999999999999999753
No 53
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=73.27 E-value=6.3 Score=26.56 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=25.9
Q ss_pred CeEEEEEeCCCCCCCceEEEEECCEEEEEE
Q psy14967 75 NKVQVILDVQQFSPNEISIKTVDGFILVEG 104 (168)
Q Consensus 75 ~~~~v~~~lpG~~~edi~V~v~~~~L~I~g 104 (168)
..|.-.+.+|.++++.++-++.+|.|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 356667789999999999999999999974
No 54
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=73.05 E-value=12 Score=25.29 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=30.2
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcCCC
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRVST 155 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~~~ 155 (168)
+|.-.+.|| +++.++|+..+ .+|.|+|+.-+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~-~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEV-ENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcccc
Confidence 788889999 68999999999 699999998776554
No 55
>PRK10743 heat shock protein IbpA; Provisional
Probab=72.64 E-value=6.5 Score=29.10 Aligned_cols=34 Identities=6% Similarity=0.175 Sum_probs=26.7
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcCC
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRVS 154 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~~ 154 (168)
.|.-...|| +|+.+.|+.++ .+|+|+|+.-+..+
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~~~~ 79 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITA-QDNLLVVKGAHADE 79 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEECcc
Confidence 445556688 89999999999 59999999966543
No 56
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=70.45 E-value=13 Score=24.94 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=28.3
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcC
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRV 153 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~ 153 (168)
+|.-.+.|| +++++.|+.++ .||.|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v-~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRT-VDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 678888898 88999999999 5999999996543
No 57
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=69.87 E-value=9 Score=24.75 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEEc
Q psy14967 88 PNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 150 (168)
Q Consensus 88 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~P 150 (168)
|+.++|+++++.+++.|..- ..++.+|..|. ++... +++.+++...
T Consensus 2 P~gV~v~~~~~~i~v~G~~g-------------~l~~~~~~~v~---v~~~~-~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG-------------ELSRPIPPGVK---VEIKV-EDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETTEEEEESSSS-------------EEEEEETTTEE---EEEEE-ETTSEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE-------------eEEEECCCCee---EEEEc-CCCceEEEEC
Confidence 57889999999999998532 35566776655 44445 4666666553
No 58
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=69.53 E-value=12 Score=25.19 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=28.4
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcC
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRV 153 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~ 153 (168)
.|.-.+.|| +++++.|+.+. .+|.|+|+.-+.+
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v-~~~~L~I~g~~~~ 43 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKV-LDDYVEIHGKHSE 43 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 688888998 89999999999 5999999996543
No 59
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=69.51 E-value=9.9 Score=24.61 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=28.6
Q ss_pred CCCeEEEEEeCC-CCCCCceEEEEECCEEEEEEE
Q psy14967 73 EENKVQVILDVQ-QFSPNEISIKTVDGFILVEGK 105 (168)
Q Consensus 73 ~~~~~~v~~~lp-G~~~edi~V~v~~~~L~I~g~ 105 (168)
....|.-.+.|| +++++.++..+.+|.|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENGVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEEc
Confidence 357788899999 789999999999999999853
No 60
>KOG2265|consensus
Probab=68.00 E-value=40 Score=26.20 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=55.6
Q ss_pred ceeeEeCCCeEEEEEeCC-CC-CCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCE
Q psy14967 67 VSNITNEENKVQVILDVQ-QF-SPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGV 144 (168)
Q Consensus 67 ~~di~e~~~~~~v~~~lp-G~-~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~Gi 144 (168)
.-.+..+=..+.|.+-+| |+ +..+|.+.+....|.|.-+.+.. +..+ .|...|+.+.-.=++ ++|.
T Consensus 20 ~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~-----ildG------~L~~~vk~des~Wti-Ed~k 87 (179)
T KOG2265|consen 20 KYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPP-----ILDG------ELSHSVKVDESTWTI-EDGK 87 (179)
T ss_pred ceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCc-----eecC------ccccccccccceEEe-cCCE
Confidence 346667777888888776 88 89999999999999888654431 2223 356677888778888 7998
Q ss_pred EEEEEcCcCC
Q psy14967 145 LTITAPKRVS 154 (168)
Q Consensus 145 L~I~~PK~~~ 154 (168)
+.|.+-++..
T Consensus 88 ~i~i~l~K~~ 97 (179)
T KOG2265|consen 88 MIVILLKKSN 97 (179)
T ss_pred EEEEEeeccc
Confidence 8888766543
No 61
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=67.92 E-value=18 Score=23.13 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=29.0
Q ss_pred CeEEEEEeCCC-CCCCceEEEEECCEEEEEEEEec
Q psy14967 75 NKVQVILDVQQ-FSPNEISIKTVDGFILVEGKHEE 108 (168)
Q Consensus 75 ~~~~v~~~lpG-~~~edi~V~v~~~~L~I~g~~~~ 108 (168)
+.|.+.+++++ +++++.+.++.++.|.|+=.+.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCC
Confidence 66888899985 79999999999999999976543
No 62
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=66.38 E-value=11 Score=25.41 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=27.4
Q ss_pred CCeEEEEEeCC-CCCCCceEEEEECCEEEEEE
Q psy14967 74 ENKVQVILDVQ-QFSPNEISIKTVDGFILVEG 104 (168)
Q Consensus 74 ~~~~~v~~~lp-G~~~edi~V~v~~~~L~I~g 104 (168)
...|.-.+.|| +++++.++-+..+|.|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 35788899999 78999999999999999974
No 63
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=65.03 E-value=18 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=27.5
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCc
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 152 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~ 152 (168)
.|.-.+.+| +++++.|+..+ .+|.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v-~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKV-LGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEc
Confidence 678888897 89999999999 599999999543
No 64
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=64.31 E-value=16 Score=25.15 Aligned_cols=30 Identities=10% Similarity=0.359 Sum_probs=26.0
Q ss_pred CeEEEEEeCC-CCCCCceEEEEE-CCEEEEEE
Q psy14967 75 NKVQVILDVQ-QFSPNEISIKTV-DGFILVEG 104 (168)
Q Consensus 75 ~~~~v~~~lp-G~~~edi~V~v~-~~~L~I~g 104 (168)
..|.=++.|| ++++++|+-.+. +|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4566778898 899999999999 99999986
No 65
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=64.12 E-value=12 Score=27.90 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=26.5
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcC
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRV 153 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~ 153 (168)
.|.-...|| +++.++|...+ ++|.|+|+.-+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v-~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQL-EGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 455566788 88999999999 6999999996543
No 66
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=63.92 E-value=26 Score=23.53 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=28.9
Q ss_pred EEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcC
Q psy14967 119 QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRV 153 (168)
Q Consensus 119 ~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~ 153 (168)
.|.-.+.|| +++++.|+..+ .++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v-~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKT-KDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEE-ECCEEEEEEEECc
Confidence 688889999 89999999999 6999999997653
No 67
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=63.61 E-value=12 Score=25.25 Aligned_cols=31 Identities=6% Similarity=0.186 Sum_probs=27.7
Q ss_pred CCeEEEEEeCC-CCCCCceEEEE-ECCEEEEEE
Q psy14967 74 ENKVQVILDVQ-QFSPNEISIKT-VDGFILVEG 104 (168)
Q Consensus 74 ~~~~~v~~~lp-G~~~edi~V~v-~~~~L~I~g 104 (168)
...|.=.+.|| +++++.|+-.+ .+|.|+|++
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence 46788899998 79999999999 899999986
No 68
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=63.59 E-value=29 Score=22.79 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=30.5
Q ss_pred EEEEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcCC
Q psy14967 118 RQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRVS 154 (168)
Q Consensus 118 r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~~ 154 (168)
..|.-.+.|| ++.+++|+..+ .++.|+|+.-+...
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v-~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKV-SDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEE-ECCEEEEEEEEeee
Confidence 3788899999 59999999999 59999999987654
No 69
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=63.35 E-value=14 Score=25.00 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=27.0
Q ss_pred CeEEEEEeCC-CCCCCceEEEEECCEEEEEEEEecc
Q psy14967 75 NKVQVILDVQ-QFSPNEISIKTVDGFILVEGKHEEK 109 (168)
Q Consensus 75 ~~~~v~~~lp-G~~~edi~V~v~~~~L~I~g~~~~~ 109 (168)
..|.-.+.|| +++++.++-.+.+|.|+|+.-+...
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk~~~ 90 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENGVLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTSEEEEEEEBSSS
T ss_pred ceEEEEEcCCCcCCcceEEEEecCCEEEEEEEcccc
Confidence 4677788998 7899999999999999999976554
No 70
>KOG3591|consensus
Probab=59.96 E-value=18 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=24.2
Q ss_pred EEeCC-CCCCCceEEEEE-CCEEEEEEEEec
Q psy14967 80 ILDVQ-QFSPNEISIKTV-DGFILVEGKHEE 108 (168)
Q Consensus 80 ~~~lp-G~~~edi~V~v~-~~~L~I~g~~~~ 108 (168)
+.-|| |++++.|.=.+. +|.|+|+|.+..
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 34577 999999999998 899999997654
No 71
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=57.19 E-value=25 Score=21.49 Aligned_cols=32 Identities=6% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCeEEEEEeCCC-CCCCceEEEEECCEEEEEEE
Q psy14967 74 ENKVQVILDVQQ-FSPNEISIKTVDGFILVEGK 105 (168)
Q Consensus 74 ~~~~~v~~~lpG-~~~edi~V~v~~~~L~I~g~ 105 (168)
...|...+.||+ +++++++..+.++.|+|.-.
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 568889999985 68899999999999999753
No 72
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=55.63 E-value=9.1 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.7
Q ss_pred CCCCCceEEEEECCEEEEEEEE
Q psy14967 85 QFSPNEISIKTVDGFILVEGKH 106 (168)
Q Consensus 85 G~~~edi~V~v~~~~L~I~g~~ 106 (168)
-|+++.|.|+...+.|.|+|+.
T Consensus 22 ~f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 22 SFDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EEETTEEEEEETTEEEEEEEEE
T ss_pred EECCCEEEEEeCCEEEEEECce
Confidence 4689999999999999999985
No 73
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=54.15 E-value=40 Score=21.20 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=29.1
Q ss_pred CCeEEEEEeCCC-CCCCceEEEEECCEEEEEEEEec
Q psy14967 74 ENKVQVILDVQQ-FSPNEISIKTVDGFILVEGKHEE 108 (168)
Q Consensus 74 ~~~~~v~~~lpG-~~~edi~V~v~~~~L~I~g~~~~ 108 (168)
+..|.+.++|++ +++++...++.++.|.|.=.+..
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~ 75 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKE 75 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECC
Confidence 467888888885 68899999999999999976544
No 74
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=54.14 E-value=58 Score=25.28 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=30.2
Q ss_pred CCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEEc
Q psy14967 88 PNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 150 (168)
Q Consensus 88 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~P 150 (168)
|+.++|+++++.++|+|.+- +.++.+.-+ .++... ++|.|.|+..
T Consensus 13 P~~V~v~i~~~~v~VkGp~G-----------~L~~~~~~~------~v~i~~-~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPKG-----------ELTRDFWYP------GVTISV-EDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCEEEEECCCe-----------EEEEEecCC------cEEEEE-ECCEEEEEEC
Confidence 78899999999999999632 223333211 345566 5787777754
No 75
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=53.20 E-value=60 Score=25.03 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEEc
Q psy14967 88 PNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 150 (168)
Q Consensus 88 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~P 150 (168)
|+.++|+++++.|+|+|.+- +.. ..||.. +.... +++.|.|..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~G-----------~l~--~~~~~~-----v~i~~-~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKG-----------TLS--RKIPDL-----ITIEI-QDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCE-----------EEE--EECCCC-----eEEEE-eCCEEEEEcC
Confidence 68899999999999999633 222 344543 45556 5777777754
No 76
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=52.18 E-value=73 Score=24.43 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEEc
Q psy14967 88 PNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 150 (168)
Q Consensus 88 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~P 150 (168)
|++++|+++++.++|+|.+- +.++.+. |. .+.... ++|.|.|+..
T Consensus 7 P~~V~v~i~~~~i~vkGp~G-----------~L~~~~~-~~-----~v~i~~-~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKG-----------EVTRELW-YP-----GIEISV-EDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCCe-----------EEEEEEe-CC-----cEEEEE-eCCEEEEEeC
Confidence 68899999999999999632 2233332 22 355566 5888888754
No 77
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=51.15 E-value=59 Score=20.41 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=30.3
Q ss_pred eeeE-eCCCeEEEEEeCCCCCCCceEEEEE-CCEEEEEEE
Q psy14967 68 SNIT-NEENKVQVILDVQQFSPNEISIKTV-DGFILVEGK 105 (168)
Q Consensus 68 ~di~-e~~~~~~v~~~lpG~~~edi~V~v~-~~~L~I~g~ 105 (168)
+.+. -..+.+.|++..+|+.+..-+|.+. +....|+.+
T Consensus 27 ~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 27 LTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred ceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 3444 5577999999999999998889988 667777765
No 78
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=50.63 E-value=42 Score=24.69 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=26.1
Q ss_pred CeEEEEEeCC-CCCCCceEEEEECCEEEEEEEEecc
Q psy14967 75 NKVQVILDVQ-QFSPNEISIKTVDGFILVEGKHEEK 109 (168)
Q Consensus 75 ~~~~v~~~lp-G~~~edi~V~v~~~~L~I~g~~~~~ 109 (168)
..|.=++.|| +++++.++-++.+|.|+|.-.+...
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCcEEEEEEecccc
Confidence 3455566666 5778889999999999999876543
No 79
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=50.52 E-value=13 Score=25.30 Aligned_cols=25 Identities=36% Similarity=0.725 Sum_probs=21.3
Q ss_pred eCCCCCCCceEEEEECCEEEEEEEE
Q psy14967 82 DVQQFSPNEISIKTVDGFILVEGKH 106 (168)
Q Consensus 82 ~lpG~~~edi~V~v~~~~L~I~g~~ 106 (168)
.+=-|+++.|.++...+.|+|+|+.
T Consensus 37 ~I~~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 37 GLVVFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred ceEEECCCEEEEEcCceEEEEEccc
Confidence 3345789999999999999999974
No 80
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=50.07 E-value=13 Score=25.31 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=19.6
Q ss_pred CCCCCCceEEEEECCEEEEEEEE
Q psy14967 84 QQFSPNEISIKTVDGFILVEGKH 106 (168)
Q Consensus 84 pG~~~edi~V~v~~~~L~I~g~~ 106 (168)
=-|+++.|.+.+..+.|+|+|+.
T Consensus 20 ~sfd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 20 ISFDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred EEECCCEEEEEeCcEEEEEEcce
Confidence 34788999999999999999974
No 81
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=48.09 E-value=27 Score=25.93 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred CCCCCCceEEEEECCEEEEEEEEe
Q psy14967 84 QQFSPNEISIKTVDGFILVEGKHE 107 (168)
Q Consensus 84 pG~~~edi~V~v~~~~L~I~g~~~ 107 (168)
.|+...++.|.+++|.++++|.-.
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~ 61 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAA 61 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeC
Confidence 588889999999999999999743
No 82
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=47.67 E-value=33 Score=21.55 Aligned_cols=23 Identities=13% Similarity=0.501 Sum_probs=19.0
Q ss_pred EeCCCCCC-CceEEEEECCEEEEE
Q psy14967 81 LDVQQFSP-NEISIKTVDGFILVE 103 (168)
Q Consensus 81 ~~lpG~~~-edi~V~v~~~~L~I~ 103 (168)
++-.||.. +.|+|++..+.|+|+
T Consensus 33 L~~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEECCEEEEe
Confidence 34569964 789999999999997
No 83
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=47.44 E-value=10 Score=31.83 Aligned_cols=81 Identities=6% Similarity=-0.070 Sum_probs=59.5
Q ss_pred cceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEE
Q psy14967 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVL 145 (168)
Q Consensus 66 p~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL 145 (168)
..-+..++.+...|-+.-|-+..|+|.+-+++|+|.|+-+-+.. +-.|.-...|-..|+|+..+-... --.+
T Consensus 177 i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~-------~~~~~~~~~Ly~ev~P~~~s~k~f-sK~~ 248 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRL-------RLWNDITISLYKEVYPDIRSIKSF-SKRV 248 (368)
T ss_pred eeeeccccceeEEEEEecCCCCccccceeecCCcceeeeecccc-------chHHHhhhhhhhhcCcchhhhhhc-chhh
Confidence 34566788888888888899999999999999999998763321 112455667778888888777764 4677
Q ss_pred EEEEcCcCC
Q psy14967 146 TITAPKRVS 154 (168)
Q Consensus 146 ~I~~PK~~~ 154 (168)
.|++-|.+.
T Consensus 249 e~~l~KV~~ 257 (368)
T COG5091 249 EVHLRKVEM 257 (368)
T ss_pred eehhhhhhh
Confidence 777776544
No 84
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=47.00 E-value=53 Score=21.12 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=29.0
Q ss_pred CCeEEEEEeCCC-CCCCceEEEEECCEEEEEEEEec
Q psy14967 74 ENKVQVILDVQQ-FSPNEISIKTVDGFILVEGKHEE 108 (168)
Q Consensus 74 ~~~~~v~~~lpG-~~~edi~V~v~~~~L~I~g~~~~ 108 (168)
+..|.+.++|.+ +.+++.+..+.++.|.|.-.+..
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 457888888875 68999999999999999976654
No 85
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=46.55 E-value=79 Score=24.72 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=31.3
Q ss_pred CCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEEECCcCcccCCcEEEeCCCCEEEEEEc
Q psy14967 88 PNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAP 150 (168)
Q Consensus 88 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~P 150 (168)
|++++|+++++.|+|+|.+- +.++.+ |.. ...|.... +||.|.|+.+
T Consensus 13 P~~V~V~i~~~~v~VkGp~G-----------~L~~~~--~~~--~~~i~i~~-~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYG-----------ELTRSF--RHL--PVDIKLSK-DGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCCc-----------eEEEEe--cCC--CceEEEEe-CCCEEEEEeC
Confidence 78999999999999999632 223333 221 02366667 5888888754
No 86
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=36.93 E-value=1.5e+02 Score=23.06 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=29.1
Q ss_pred eCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecc
Q psy14967 72 NEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEK 109 (168)
Q Consensus 72 e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~ 109 (168)
..++.++=++.||--.++-+++++.++.|.|.-++.++
T Consensus 133 ~~~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 133 RVGEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred ecCCceEeeEecCCCccceeeEEEeCceEEEEEeecCC
Confidence 33444555778886678888999999999999987654
No 87
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.25 E-value=1.1e+02 Score=21.34 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=28.7
Q ss_pred ceeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEE
Q psy14967 67 VSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEG 104 (168)
Q Consensus 67 ~~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g 104 (168)
...+.+.+| .|....||++ .|+|+.+++.|.|.+
T Consensus 25 g~~v~~eGD--~ivas~pgis--~ieik~E~kkL~v~t 58 (96)
T COG4004 25 GWTVSEEGD--RIVASSPGIS--RIEIKPENKKLLVNT 58 (96)
T ss_pred CeeEeeccc--EEEEecCCce--EEEEecccceEEEec
Confidence 368888888 7788899985 588899999999988
No 88
>KOG3413|consensus
Probab=33.12 E-value=23 Score=26.77 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=17.8
Q ss_pred CcCcccCCcEEEeCCCCEEEEEEcC
Q psy14967 127 PKDVEIEKVTSSLSSDGVLTITAPK 151 (168)
Q Consensus 127 P~~vd~~~i~A~~~~~GiL~I~~PK 151 (168)
-+.++.+.--+.| .||||+|.++-
T Consensus 66 ~e~~~~~~~Dv~y-~~GVLTl~lg~ 89 (156)
T KOG3413|consen 66 AEEVPGEGFDVDY-ADGVLTLKLGS 89 (156)
T ss_pred HhhcCcccccccc-ccceEEEEecC
Confidence 3445556667889 59999999984
No 89
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=32.49 E-value=49 Score=23.27 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.7
Q ss_pred CCcEEEeCCCCEEEEEEc
Q psy14967 133 EKVTSSLSSDGVLTITAP 150 (168)
Q Consensus 133 ~~i~A~~~~~GiL~I~~P 150 (168)
..+.+.+ .+|||+|+++
T Consensus 28 ~d~D~e~-~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVET-QGGVLTLTFG 44 (105)
T ss_pred cCEeeec-cCCEEEEEEC
Confidence 4588888 5999999998
No 90
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=32.24 E-value=44 Score=26.13 Aligned_cols=18 Identities=28% Similarity=0.708 Sum_probs=15.0
Q ss_pred CCceEEEEECCEEEEEEE
Q psy14967 88 PNEISIKTVDGFILVEGK 105 (168)
Q Consensus 88 ~edi~V~v~~~~L~I~g~ 105 (168)
|+.++|+++++.|+|+|.
T Consensus 12 P~~V~V~i~~~~ItVkGp 29 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGK 29 (189)
T ss_pred CCCCEEEEeCCEEEEECC
Confidence 678888888888888884
No 91
>PRK10568 periplasmic protein; Provisional
Probab=31.63 E-value=78 Score=24.79 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred CCCCCCceEEEEECCEEEEEEEEe
Q psy14967 84 QQFSPNEISIKTVDGFILVEGKHE 107 (168)
Q Consensus 84 pG~~~edi~V~v~~~~L~I~g~~~ 107 (168)
++++..+|+|.+.+|.++++|.-.
T Consensus 73 ~~i~~~~I~V~v~~G~V~L~G~V~ 96 (203)
T PRK10568 73 DNIKSTDISVKTHQKVVTLSGFVE 96 (203)
T ss_pred CCCCCCceEEEEECCEEEEEEEeC
Confidence 567788999999999999999744
No 92
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=31.61 E-value=49 Score=25.43 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=14.4
Q ss_pred CCceEEEEECCEEEEEEE
Q psy14967 88 PNEISIKTVDGFILVEGK 105 (168)
Q Consensus 88 ~edi~V~v~~~~L~I~g~ 105 (168)
|++++|+++++.|+|+|.
T Consensus 11 P~~V~v~~~~~~v~v~Gp 28 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGP 28 (175)
T ss_pred CCCcEEEEeCCEEEEEcC
Confidence 677888888888888874
No 93
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=31.51 E-value=85 Score=18.81 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=17.0
Q ss_pred eeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEE
Q psy14967 68 SNITNEENKVQVILDVQQFSPNEISIKTVDGFILVE 103 (168)
Q Consensus 68 ~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~ 103 (168)
++|.-+.+++.|++.- | + +.|+|.+.|..++++
T Consensus 21 l~v~i~~~~v~v~~~~-g-~-~~l~i~v~g~~~~L~ 53 (54)
T PF03633_consen 21 LEVEITHEKVTVTLLS-G-D-APLTIKVYGEEVTLK 53 (54)
T ss_dssp EEEEEETTEEEEEEEE-S-S---EEEEETT------
T ss_pred EEEEEECCEEEEEEcc-C-C-ccEEEEECCCccccC
Confidence 6677777777777662 3 1 677887777776654
No 94
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=31.09 E-value=49 Score=25.46 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=14.7
Q ss_pred CCceEEEEECCEEEEEEE
Q psy14967 88 PNEISIKTVDGFILVEGK 105 (168)
Q Consensus 88 ~edi~V~v~~~~L~I~g~ 105 (168)
|++++|+++++.|+|+|.
T Consensus 12 P~~V~v~~~~~~v~vkGp 29 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGP 29 (178)
T ss_pred CCCCEEEEECCEEEEECC
Confidence 678888888888888884
No 95
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=27.62 E-value=66 Score=22.53 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.3
Q ss_pred CcEEEeCCCCEEEEEEcC
Q psy14967 134 KVTSSLSSDGVLTITAPK 151 (168)
Q Consensus 134 ~i~A~~~~~GiL~I~~PK 151 (168)
.+.+.+ .+|||+|+++.
T Consensus 26 d~D~e~-~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCER-AGGVLTLTFEN 42 (102)
T ss_pred Ceeeec-CCCEEEEEECC
Confidence 378888 59999999974
No 96
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=27.23 E-value=2e+02 Score=23.04 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=23.5
Q ss_pred EEEECCEEEEEEEEeccc---CCCc-----------eEEEEEEEEEECCcC
Q psy14967 93 IKTVDGFILVEGKHEEKE---DEHG-----------FISRQFKRRYLLPKD 129 (168)
Q Consensus 93 V~v~~~~L~I~g~~~~~~---~~~~-----------~~~r~F~r~~~LP~~ 129 (168)
|.++++.|+|++.++... .... +..+.|+-++++|..
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 566788999998766531 1111 223568888888853
No 97
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=26.32 E-value=76 Score=22.38 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=14.0
Q ss_pred cEEEeCCCCEEEEEEcC
Q psy14967 135 VTSSLSSDGVLTITAPK 151 (168)
Q Consensus 135 i~A~~~~~GiL~I~~PK 151 (168)
+.+.+ .+|||+|+++.
T Consensus 29 ~D~e~-~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCER-NGGVLTLTFEN 44 (105)
T ss_pred eeeec-cCCEEEEEECC
Confidence 78888 59999999985
No 98
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=25.36 E-value=86 Score=22.91 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=29.2
Q ss_pred eeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEE
Q psy14967 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEG 104 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g 104 (168)
-+..-...+..-+||.++++++|.+.-+++.|+|.-
T Consensus 40 ~~~~~~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~L 75 (157)
T PF14014_consen 40 LLVIYPGTVKAGIDLSKIKEEDIEVDEDGKTITITL 75 (157)
T ss_pred EEEEEEEEEEEEEEhHHCCcceEEEcCCCCEEEEEC
Confidence 455566677788888899999988888999999985
No 99
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=25.00 E-value=80 Score=22.26 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=14.9
Q ss_pred CCcEEEeCCCCEEEEEEcC
Q psy14967 133 EKVTSSLSSDGVLTITAPK 151 (168)
Q Consensus 133 ~~i~A~~~~~GiL~I~~PK 151 (168)
..+.+.+ .+|||+|+++.
T Consensus 30 ~d~d~e~-~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVER-SGGVLTIEFPD 47 (109)
T ss_dssp STEEEEE-ETTEEEEEETT
T ss_pred CceEEEc-cCCEEEEEECC
Confidence 3588999 59999999964
No 100
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=25.00 E-value=3.4e+02 Score=21.33 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=24.0
Q ss_pred CeEEEEEeCCCC-CCCceEEEEECCEEEEEEEEeccc
Q psy14967 75 NKVQVILDVQQF-SPNEISIKTVDGFILVEGKHEEKE 110 (168)
Q Consensus 75 ~~~~v~~~lpG~-~~edi~V~v~~~~L~I~g~~~~~~ 110 (168)
..=.+-+.++|| +|+++. ++.++|-|..+..+
T Consensus 93 ~qGRfiAy~~GFlDPv~~~----gr~vTv~G~i~g~E 125 (191)
T COG3065 93 SQGRFIAYVNGFLDPVNFR----GRLVTVVGTIAGTE 125 (191)
T ss_pred CCceEEEEcccccChhhhc----CcEEEEEeeecccc
Confidence 334567888998 788776 89999999865543
No 101
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=24.75 E-value=1.4e+02 Score=20.33 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=27.0
Q ss_pred eEeCCCeEEEEEeC-CCCCCCceEEEEEC--CEEEEEEEEe
Q psy14967 70 ITNEENKVQVILDV-QQFSPNEISIKTVD--GFILVEGKHE 107 (168)
Q Consensus 70 i~e~~~~~~v~~~l-pG~~~edi~V~v~~--~~L~I~g~~~ 107 (168)
|.++++.+.+.+.+ ||-+.+.| +.+++ +.|.|+-.-.
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i-~g~~~~~~~Lki~v~Ap 40 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSI-VGYNEWRKRVEVKIKAP 40 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCccee-ccccCCCCeEEEEEecC
Confidence 45778888888877 78888877 44567 7788876543
No 102
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=24.53 E-value=53 Score=20.81 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCEEEEEEcCcCCCCCeeeEEEe
Q psy14967 133 EKVTSSLSSDGVLTITAPKRVSTRFYFFSLKL 164 (168)
Q Consensus 133 ~~i~A~~~~~GiL~I~~PK~~~~~~~~i~i~~ 164 (168)
..|.|.| +||+|.--=|- .-....++.|.+
T Consensus 3 ~~I~aiY-e~GvlkPl~~~-~L~Eg~~V~i~I 32 (60)
T PF01954_consen 3 KVIEAIY-ENGVLKPLEPV-DLPEGEEVKITI 32 (60)
T ss_dssp --EEEEE-ETTEEEECS------TTEEEEEEE
T ss_pred ceEEEEE-ECCEEEECCCC-CCCCCCEEEEEE
Confidence 4589999 79999865432 233444444443
No 103
>PRK10568 periplasmic protein; Provisional
Probab=24.19 E-value=1.2e+02 Score=23.74 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.2
Q ss_pred CCCCCCceEEEEECCEEEEEEEE
Q psy14967 84 QQFSPNEISIKTVDGFILVEGKH 106 (168)
Q Consensus 84 pG~~~edi~V~v~~~~L~I~g~~ 106 (168)
+.++..+|+|.+++|.+++.|.-
T Consensus 152 ~~v~~~~I~V~v~~G~V~L~G~V 174 (203)
T PRK10568 152 DIVPSRKVKVETTDGVVQLSGTV 174 (203)
T ss_pred CCCCcceeEEEEeCcEEEEEEEE
Confidence 45678899999999999999974
No 104
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=22.86 E-value=71 Score=22.19 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.5
Q ss_pred EEEeCCCCEEEEEEcC
Q psy14967 136 TSSLSSDGVLTITAPK 151 (168)
Q Consensus 136 ~A~~~~~GiL~I~~PK 151 (168)
.+.+ .+|||+|+++.
T Consensus 30 D~e~-~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEY-SSGVLTLELPS 44 (97)
T ss_pred cccc-CCCEEEEEECC
Confidence 6778 59999999964
No 105
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=22.67 E-value=2.6e+02 Score=21.58 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=22.4
Q ss_pred CCceEEEEECCEEEEEEEEeccc----------CCCceEEEEEEEEEECCcC
Q psy14967 88 PNEISIKTVDGFILVEGKHEEKE----------DEHGFISRQFKRRYLLPKD 129 (168)
Q Consensus 88 ~edi~V~v~~~~L~I~g~~~~~~----------~~~~~~~r~F~r~~~LP~~ 129 (168)
+++++| +++.|+|++.++... ....+..+.|+-++.+|..
T Consensus 31 ~~nv~v--~~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEF--SDGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEE--ECCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 455443 477777777654311 0112345677888888753
No 106
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=22.67 E-value=1e+02 Score=20.60 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCCCceEEEE-ECCEEEEEEE
Q psy14967 77 VQVILDVQQFSPNEISIKT-VDGFILVEGK 105 (168)
Q Consensus 77 ~~v~~~lpG~~~edi~V~v-~~~~L~I~g~ 105 (168)
|.+++.=+.-..+..+|+. .++.|.|+|.
T Consensus 20 f~~~~~~~~~~~d~F~l~~~~~gki~I~G~ 49 (86)
T PF12971_consen 20 FTFELIPSSNGKDVFELSSADNGKIVIRGN 49 (86)
T ss_dssp EEEEE---BTTBEEEEEEE-SSS-EEEEES
T ss_pred EEEEEecCCCCCCEEEEEeCCCCeEEEEeC
Confidence 4444444333677778887 8999999995
No 107
>KOG3260|consensus
Probab=21.74 E-value=1.5e+02 Score=23.47 Aligned_cols=75 Identities=9% Similarity=0.154 Sum_probs=48.7
Q ss_pred eeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEEEecccCCCceEEEEEEEEE-ECCcCcccCCcEEEeCCCCEEEE
Q psy14967 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRY-LLPKDVEIEKVTSSLSSDGVLTI 147 (168)
Q Consensus 69 di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~r~F~r~~-~LP~~vd~~~i~A~~~~~GiL~I 147 (168)
-+-.+++.+.+.+.|-|+..|.++|+...+.|-+.-.--. + ..|.-.+ .|-..+++++-+-..+ -....|
T Consensus 78 gWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlq---G-----K~y~~~vnnLlk~I~vEks~~kvK-td~v~I 148 (224)
T KOG3260|consen 78 GWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQ---G-----KNYRMIVNNLLKPISVEKSSKKVK-TDTVLI 148 (224)
T ss_pred CccccCCeeEEEEEeecccccceeEEecccceeeeeeecC---C-----cceeeehhhhccccChhhcccccc-cceEEE
Confidence 3556778888999999999999999999999988764221 1 1222111 2334566666666664 455556
Q ss_pred EEcCc
Q psy14967 148 TAPKR 152 (168)
Q Consensus 148 ~~PK~ 152 (168)
.+.|.
T Consensus 149 ~~kkV 153 (224)
T KOG3260|consen 149 LCKKV 153 (224)
T ss_pred eehhh
Confidence 66443
No 108
>PRK11023 outer membrane lipoprotein; Provisional
Probab=21.51 E-value=1.4e+02 Score=23.00 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=21.2
Q ss_pred CCCCCCceEEEEECCEEEEEEEEe
Q psy14967 84 QQFSPNEISIKTVDGFILVEGKHE 107 (168)
Q Consensus 84 pG~~~edi~V~v~~~~L~I~g~~~ 107 (168)
++++..+|+|.+++|.+++.|.-.
T Consensus 140 ~~v~~~~I~V~t~~G~V~L~G~v~ 163 (191)
T PRK11023 140 DSVKSSNVKVTTENGEVFLLGLVT 163 (191)
T ss_pred CCCCcceEEEEEECcEEEEEEEeC
Confidence 678888999999999999999753
No 109
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=20.93 E-value=2.4e+02 Score=27.01 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=24.4
Q ss_pred EEEEEECCcCcccCCcEEEeCCCCEEEEEEcCcCCC
Q psy14967 120 FKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRVST 155 (168)
Q Consensus 120 F~r~~~LP~~vd~~~i~A~~~~~GiL~I~~PK~~~~ 155 (168)
|.-..+.-..||...+.-.| ++|+|+|.+|-.++.
T Consensus 734 YsS~~P~~c~v~~~~~~f~y-~~g~~~~~~~~~~~~ 768 (777)
T PLN02711 734 FASEKPRSCKIDGEEVEFGY-EDCMVVVQVPWSGSS 768 (777)
T ss_pred EecCCCeEEEECCEEeeeEe-cCCEEEEEecCCCcC
Confidence 44433444556777777888 589999999987744
No 110
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=20.65 E-value=1.6e+02 Score=23.82 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=12.4
Q ss_pred CCEEEEEEEEecccCC
Q psy14967 97 DGFILVEGKHEEKEDE 112 (168)
Q Consensus 97 ~~~L~I~g~~~~~~~~ 112 (168)
++.|.|+|+++-.-+.
T Consensus 159 NGNL~I~G~Kev~vN~ 174 (230)
T COG2063 159 NGNLVIEGEKEVRVNG 174 (230)
T ss_pred CCCEEEEEEEEEEECC
Confidence 7889999998765443
No 111
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=20.37 E-value=83 Score=23.35 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=21.5
Q ss_pred eeeEeCCCeEEEEEeCCCCCCCceEEEEECCEEEEEEE
Q psy14967 68 SNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGK 105 (168)
Q Consensus 68 ~di~e~~~~~~v~~~lpG~~~edi~V~v~~~~L~I~g~ 105 (168)
+.+... +.+.|+++.+.=--+.|+++++++.|.|+-+
T Consensus 13 V~l~~g-~~~~v~v~~~~~l~~~i~~~v~~g~L~I~~~ 49 (181)
T PF10988_consen 13 VELVQG-DSPSVEVEADENLLDRIKVEVKDGTLKISYK 49 (181)
T ss_dssp EEEEE--SS-EEEEEEEHHHHCCEEEEEETTEEEEEE-
T ss_pred EEEEEC-CCcEEEEEEChhhcceEEEEEECCEEEEEEC
Confidence 344443 4446666655433567888888888888766
Done!