RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14967
(168 letters)
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 173 bits (439), Expect = 4e-56
Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 10/155 (6%)
Query: 1 MSLVPLLFRDWWDDFDRPSRLLDQHFGLGLRRDDLLSNWSSLAQSARPIGAGYLRPW--- 57
+++ R + F PSRL DQ FG L DL +SL+ YLRP
Sbjct: 3 IAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLS-------PFYLRPPSFL 55
Query: 58 RSLARSNSGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFIS 117
R+ + ++G+S + E+++ V LDV+ FSP E+ +K + I V GKHEE++DEHGFIS
Sbjct: 56 RAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 115
Query: 118 RQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 152
R+F R+Y +P DV+ +TSSLSSDGVLT+ P++
Sbjct: 116 REFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRK 150
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 131 bits (331), Expect = 1e-40
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 66 GVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYL 125
++ + + V+LDV+ FSP EIS+K V + V +HEE+ DEHGFI+R+F RRY
Sbjct: 2 AMAQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYR 61
Query: 126 LPKDVEIEKVTSSLSSDGVLTITAPKRVSTR 156
LP V+ VTS+LS +GVL+I A +
Sbjct: 62 LPPGVDPAAVTSALSPEGVLSIQATPASAQA 92
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 128 bits (322), Expect = 3e-39
Identities = 38/87 (43%), Positives = 64/87 (73%)
Query: 65 SGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRY 124
SG+S + ++ +K + LDV+ FSP ++++K + F+ + GKH E++D+HG+ISR+F RRY
Sbjct: 2 SGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRY 61
Query: 125 LLPKDVEIEKVTSSLSSDGVLTITAPK 151
LP +V+ ++ SLS+DG+LT + PK
Sbjct: 62 RLPSNVDQSALSCSLSADGMLTFSGPK 88
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 126 bits (319), Expect = 5e-39
Identities = 37/81 (45%), Positives = 58/81 (71%)
Query: 71 TNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDV 130
++ ++ +V LDV F+P+E+++KT DG + + GKH ++DEHG+ISR F R+Y LP V
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGV 62
Query: 131 EIEKVTSSLSSDGVLTITAPK 151
+ +V+SSLS +G LT+ AP
Sbjct: 63 DPTQVSSSLSPEGTLTVEAPM 83
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 122 bits (307), Expect = 4e-37
Identities = 42/82 (51%), Positives = 60/82 (73%)
Query: 71 TNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRYLLPKDV 130
E+++ V LDV+ FSP E+ +K + I V GKHEE++DEHGFISR+F R+Y +P DV
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADV 61
Query: 131 EIEKVTSSLSSDGVLTITAPKR 152
+ +TSS+SSDGVLT+ P++
Sbjct: 62 DPLTITSSMSSDGVLTVNGPRK 83
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 114 bits (286), Expect = 1e-31
Identities = 31/171 (18%), Positives = 52/171 (30%), Gaps = 12/171 (7%)
Query: 1 MSLVPLL---------FRDWWDDFDRPSRLLDQHFGLGLRRD--DLLSNWSSLAQSARPI 49
M+LVPL + DD R L + + + S Q
Sbjct: 27 MALVPLDQVFDWAERSRQSLHDDIVNMHRNLFSLEPFTAMDNAFESVMKEMSAIQPREFH 86
Query: 50 GAGYLRPWRSLARSNSGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEK 109
L + +V +V+ F EI+IK ++V +
Sbjct: 87 PELEYTQPGELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVA 146
Query: 110 EDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRVSTRFYFF 160
+S R LP V+ + +++++D VL I AP
Sbjct: 147 -CGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIK 196
Score = 88.7 bits (219), Expect = 8e-22
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 55 RPWRSLARSNSGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEG---KHEEKED 111
+ V+ + + F+P ++ + + V G K E+ E+
Sbjct: 214 QLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTEN 273
Query: 112 EHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPK 151
R+F + ++ P+ V+ K + + DG++ + AP
Sbjct: 274 ASHSEHREFYKAFVTPEVVDASKTQAEI-VDGLMVVEAPL 312
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 63.5 bits (155), Expect = 1e-13
Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 31/160 (19%)
Query: 1 MSLVPLLFRDWWDDFDRPSRLLDQHFGLGLRRDDLLSNWSSLAQSARPIGAGYLRPWRSL 60
MS+V + +D F F + + ++ +AR
Sbjct: 1 MSIVR--RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANAR------------- 45
Query: 61 ARSNSGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILV---EGKHEEKEDEHGFIS 117
+ D+ E+ ++ DG +LV E E+++ +
Sbjct: 46 -------MDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHR 98
Query: 118 R-----QFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 152
+F RR+ L +D ++E+V + L +GVLT+T PK
Sbjct: 99 VERSSGKFVRRFRLLEDAKVEEVKAGLE-NGVLTVTVPKA 137
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 62.4 bits (152), Expect = 4e-13
Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 12/150 (8%)
Query: 12 WDDFDRP-SRLLDQHFGLGLRRDDLLSNWSSLAQSARPIGAGYLRPWRSLARSNSGVSNI 70
D FD R+ + F + ++ + + L +A A + ++ +I
Sbjct: 4 RDPFDSLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPA--VAAGIQISGKGFMPISI 61
Query: 71 TNEENKVQVILDVQQFSPNEISIKTVDGFILVEG--KHEEKEDEHGFISR------QFKR 122
+ ++VI + + +I + V + + + I + R
Sbjct: 62 IEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYR 121
Query: 123 RYLLPKDVEIEKVTSSLSSDGVLTITAPKR 152
LP V+ E ++ +GVL++ PK
Sbjct: 122 TIKLPATVKEENASAKFE-NGVLSVILPKA 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 57.5 bits (140), Expect = 8e-12
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 69 NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEG--KHEEKEDEHGFISR-----QFK 121
+I E N + D+ P++I ++ G + + G K E + F F
Sbjct: 8 DIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFH 67
Query: 122 RRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 152
RR+ LP + + +T++ +GVL I PKR
Sbjct: 68 RRFALPDSADADGITAAGR-NGVLEIRIPKR 97
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 49.5 bits (119), Expect = 2e-08
Identities = 19/107 (17%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 55 RPWRSLARSNSGVS----NITNEENKVQVILDVQQFSPNEISIK-TVDGFILVEGKHEEK 109
+ L+R + ++ E + V+ D+ F+ +I + + +++E + E
Sbjct: 10 KRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREIT 69
Query: 110 EDEHGFISR---QFKRRYLLPKDVEIE-KVTSSLSSDGVLTITAPKR 152
E ++++ ++ LP +V + +++ +GVLTI P
Sbjct: 70 EPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYE-NGVLTIRIPIA 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 9e-05
Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 37/164 (22%)
Query: 12 WDDFDRPSRL-LDQHFGLGLRRDD---LLSNWSSLAQSARPIGAGYLRPWRSLARSNSGV 67
W+ F R + F +G+R + S S+ + + G P L+ +
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP--MLS-----I 341
Query: 68 SNITNEENKVQVILD-VQQFSPNE--ISIKTVDG---FILVEGKHEEKEDEHGFISRQFK 121
SN+T E+ VQ ++ P + I V+G + V G + +G
Sbjct: 342 SNLTQEQ--VQDYVNKTNSHLPAGKQVEISLVNGAKNLV-VSG---PPQSLYGLNLT--L 393
Query: 122 RRYLLPKDVEIEKVTSS----LSSDGVLTITAPKRVSTRFYFFS 161
R+ P ++ ++ S S+ L + +P F S
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP--------FHS 429
Score = 34.6 bits (79), Expect = 0.012
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 82 DVQQFSPNEISIKTVDGFI--LVEGKHEEKEDEH-GFISRQFKRRYLLPKDVEIEKVTSS 138
D + +P E+ K + G++ LVE + D+ +F+ YL D I + +
Sbjct: 51 DDEPTTPAELVGKFL-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--IHALAAK 107
Query: 139 LSSDGVLTITAPKRVSTRFYF 159
L + T+ K + + Y
Sbjct: 108 LLQENDTTLVKTKEL-IKNYI 127
Score = 26.2 bits (57), Expect = 7.4
Identities = 29/171 (16%), Positives = 46/171 (26%), Gaps = 69/171 (40%)
Query: 1 MSLVPLLFRDWWDDFDRPSRLLDQHF-G--LGLRRDDLLSNWSSLAQSAR--PIGAG--- 52
M F D P+ D F G LG +++LA A I +
Sbjct: 1739 MEKA--AFEDLKSKGLIPA---DATFAGHSLG--------EYAALASLADVMSIESLVEV 1785
Query: 53 -YLR--------PWRSLARSNSG---------------------VSNITNEENKV----- 77
+ R P L RSN G V + +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 78 ------QVIL-----DVQQFSP--NEISIKTVDGFILVEGKHEEKEDEHGF 115
Q + + + N I ++ +D L + E+ + H F
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.066
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 18/38 (47%)
Query: 131 EIEKVTSSL---SSDGVLTITAPKRVSTRFYFFSLKLN 165
++K+ +SL + D +AP +L +
Sbjct: 21 ALKKLQASLKLYADD-----SAP----------ALAIK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.070
Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 57/199 (28%)
Query: 1 MSLVPLLFRDW---WD-----DFDRPSRLLDQHFGLGLRRDDLLSNWSSLA--QSARPIG 50
+S++ RD WD + D+ + +++ + L + + L+ + I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIP 388
Query: 51 AGYL-RPWRSLARSNSGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEK 109
L W + +S+ V + N+ +K ++ +Q + ISI ++ ++ K E +
Sbjct: 389 TILLSLIWFDVIKSD--VMVVVNKLHKYSLVE--KQPKESTISIP--SIYLELKVKLENE 442
Query: 110 EDEHGFISRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRVSTRFYFFS-----LK- 163
H R Y +PK + + + D YF+S LK
Sbjct: 443 YALH----RSIVDHYNIPKTFDSDDL-IPPYLDQ--------------YFYSHIGHHLKN 483
Query: 164 --------------LNFQF 168
L+F+F
Sbjct: 484 IEHPERMTLFRMVFLDFRF 502
Score = 31.7 bits (71), Expect = 0.11
Identities = 23/191 (12%), Positives = 47/191 (24%), Gaps = 94/191 (49%)
Query: 2 SLVPLLFRD-W----WDDFDRPSRLL----DQ-----------------HFGLGLRRD-- 33
L L+ + W+ F+ ++L + H + L D
Sbjct: 246 CL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 34 -DLLSNW-----SSLAQSAR---P-----IGAGYLRP----WRSLARSNSGVSNITNEEN 75
LL + L + P I +R W + N +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGLATWDNWKHVNC---------D 353
Query: 76 KVQVILD--VQQFSPNEISIKTVDGFILVEGKHEEKEDEHGFISRQFKRRY----LLPKD 129
K+ I++ + P E +++ + + P
Sbjct: 354 KLTTIIESSLNVLEPAE-----------------------------YRKMFDRLSVFPPS 384
Query: 130 VEI-EKVTSSL 139
I + S +
Sbjct: 385 AHIPTILLSLI 395
Score = 30.6 bits (68), Expect = 0.27
Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 34/180 (18%)
Query: 2 SLVPLLFRDWWDDFDRPSRLLDQHFGLGLRRDDLLSNWSSLAQSARP---------IGAG 52
S++ ++ + D +++ ++ + R RP +G+G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 53 -------YLRPWRSLARSNSGVSNIT-NEENKVQVILDVQQ-----FSPNEISIKTVDGF 99
++ + + + + N + +L++ Q PN S D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHS 220
Query: 100 ILVEGKHEEKEDE--HGFISRQFKRRYLLPKDVEIEKVTSSLSSDG---VLTITAPKRVS 154
++ + + E S+ ++ L+ +V+ K ++ + +L T K+V+
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVT 278
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein
structure initiative, northeast structural genom
consortium; NMR {Desulfitobacterium hafniense} PDB:
2kyi_A 3ipf_A
Length = 71
Score = 28.8 bits (65), Expect = 0.20
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 80 ILDVQQFSPNEISIKTVDGFILVEGK 105
+ VQ F P EI ++T+ G + ++G+
Sbjct: 12 VSKVQSFDPKEILLETIQGVLSIKGE 37
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 29.1 bits (66), Expect = 0.69
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 48 PIGAGYLRPWRSLARSNSGVSNITN---EENKVQVILDVQQFSPNEI----SIKTVDGFI 100
P+G W++L SG+S I + + V+ F+ +I + +D FI
Sbjct: 30 PVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFI 89
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 28.6 bits (65), Expect = 1.00
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 48 PIGAGYLRPWRSLARSNSGVSNITN---EENKVQVILDVQQFSPNEI----SIKTVDGFI 100
PIG W + + +GV+ +T ++ V++ +++ F + + +D F
Sbjct: 16 PIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKMDRFT 75
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 28.3 bits (64), Expect = 1.2
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 48 PIGAGYLRPWRSLARSNSGVSNITN---EENKVQVILDVQQFSPNEI----SIKTVDGFI 100
PIG W + + +G+ IT E V + +++ F+ + + +D F
Sbjct: 40 PIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFT 99
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 28.3 bits (64), Expect = 1.4
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 48 PIGAGYLRPWRSLARSNSGVSNITN---EENKVQVILDVQQFSPNEI----SIKTVDGFI 100
PIG W+ L +G+ IT + + +V+ F + K +D F
Sbjct: 19 PIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFC 78
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 27.9 bits (63), Expect = 1.6
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 48 PIGAGYLRPWRSLARSNSGVSNITN---EENKVQVILDVQQFSPNEI----SIKTVDGFI 100
PIG W SLA G+ IT + V ++Q F ++ D +
Sbjct: 35 PIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYS 94
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 27.9 bits (63), Expect = 1.9
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 21/106 (19%)
Query: 60 LARSNSGVSNITN------EENKVQVILDVQQF-SPNEISIKTVDGFILVEGKHEEKEDE 112
+ V +T ++NKV F +I + VDG + + +
Sbjct: 88 QKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVK 147
Query: 113 HGFI---SRQFKRRYLLPKDVEI--EKVTSSLSSDGVLTITA-PKR 152
+ + S P +EI EK+ +SS G L++ PKR
Sbjct: 148 NIIVATGSEVTP----FP-GIEIDEEKI---VSSTGALSLKEIPKR 185
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 27.6 bits (62), Expect = 2.0
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 22/111 (19%)
Query: 57 WRSL-ARSNSGVSNITN------EENKVQVILDVQQF-SPNEISIKTVDGFILVEGKHEE 108
L R + + + N ++KV + F S N I IK +
Sbjct: 77 LPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLN 136
Query: 109 KED---EHGFI---SRQFKRRYLLPKDVEIEKVTSSLSSDGVLTITAPKRV 153
+E + I ++ P ++ + +++SSD I K++
Sbjct: 137 EEILEGRNILIAVGNK--------PVFPPVKGIENTISSDEFFNIKESKKI 179
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 27.5 bits (62), Expect = 2.2
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 75 NKVQVILDVQQF-SPNEISIKTVDGFILVEGKH 106
NKV+++ F N + + D K+
Sbjct: 104 NKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKN 136
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation,
psychrophilic, cold adaptation, temperature, glycosyl
hydrolase, family 8; HET: XYP XYS; 1.2A
{Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB:
1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Length = 405
Score = 27.4 bits (60), Expect = 2.4
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 6 LLFRDWWDDFDRPSRLLDQHFGLGLRRDDLLSN---WSSLAQSAR 47
+ F + D+ PS + + ++ W +A +R
Sbjct: 189 IRFSPYIDNLTDPSYHIPAFYDYFANNVTNQADKNYWRQVATKSR 233
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase,
glucose-6-phosphate, yeast, allosteric AC transferase;
HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A*
3nch_A 3naz_A 3o3c_A* 3rsz_A*
Length = 725
Score = 26.7 bits (58), Expect = 4.4
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 67 VSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEE-KEDEHGFISRQFKRRYL 125
VS IT E + + PN +++ F + H KE + F+ F +
Sbjct: 267 VSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFD 326
Query: 126 LPKD 129
D
Sbjct: 327 FDLD 330
>2xsg_A Ccman5; hydrolase, mannosidase; HET: B3P; 2.00A {Cellulosimicrobium
cellulans}
Length = 774
Score = 26.6 bits (59), Expect = 5.0
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 133 EKVTSSLSSDGVLTITAPKRVSTRFYFFSLKLN 165
+ T + T+TA FY S L+
Sbjct: 695 DSTTITYDDGSAFTVTADGVSEDAFYVQSATLD 727
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 26.3 bits (59), Expect = 6.0
Identities = 5/61 (8%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 48 PIGAGYLRPWRSLARSNSGVSNITN----EENKVQVILDVQQFSPNEI----SIKTVDGF 99
+G+ + +L + V + + E ++ + F+ +++
Sbjct: 18 ALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRV 77
Query: 100 I 100
Sbjct: 78 S 78
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 26.0 bits (58), Expect = 6.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 48 PIGAGYLRPWRSLARSNSGVSNIT 71
P+G G WR L G+ +T
Sbjct: 13 PLGRGVETTWRRLIDGECGIRGLT 36
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase
family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A
{Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A*
2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Length = 744
Score = 26.1 bits (58), Expect = 7.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 133 EKVTSSLSSDGVLTITAPKRVSTRFYFFSLKLN 165
+K T + L I AP + FY S+ N
Sbjct: 658 KKATLHFENGNSLVIDAPNNSTENFYIDSMSFN 690
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 26.0 bits (58), Expect = 8.5
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 48 PIGAGYLRPWRSLARSNSGVSNIT 71
P+G G W L SG+ ++
Sbjct: 33 PLGVGTHLVWDRLIGGESGIVSLV 56
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase
family 92, BT2199; HET: SWA; 1.90A {Bacteroides
thetaiotaomicron} PDB: 2wvy_A*
Length = 737
Score = 25.7 bits (57), Expect = 9.0
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 133 EKVTSSLSSDGVLTITAPKRVSTRFYFFSLKLN 165
+KVT L ++A + R Y LN
Sbjct: 660 KKVTLHLPEGKNFVVSAADNAADRPYIRKALLN 692
>2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase,
hydrolase, glycosidase, glycoside hydrolase family 26;
HET: BGC NOY; 1.20A {Clostridium thermocellum} SCOP:
c.1.8.3 PDB: 2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A*
Length = 283
Score = 25.5 bits (55), Expect = 9.2
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 7 LFRDWWDDFDRPSRLLDQHFGLGLRRDDLLSNWSSLAQSARPIGAG-YLRPWRSLAR 62
F +W DF D + G L+ W + I G +A+
Sbjct: 40 QFINWSTDFSWVRPYADAVYNNGSI---LMITWEPWEYNTVDIKNGKADAYITRMAQ 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,566,551
Number of extensions: 141675
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 42
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)