RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14967
         (168 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 55.8 bits (134), Expect = 2e-11
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 69  NITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHEEKEDE--------HGFISRQF 120
           +I   +  ++VI  +   +  +I +  V   + +  K                     + 
Sbjct: 14  SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEI 73

Query: 121 KRRYLLPKDVEIEKVTSSLSSDGVLTITAPKR 152
            R   LP  V+ E  ++    +GVL++  PK 
Sbjct: 74  YRTIKLPATVKEENASAKFE-NGVLSVILPKA 104


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 52.8 bits (126), Expect = 6e-10
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 30  LRRDDLLSNWSSLAQSARPIGAGYLRPWRSLARSNSGVSN----ITNEENKVQVILDVQQ 85
           +RR ++   ++ L           +          +  +N                D+  
Sbjct: 3   VRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPG 62

Query: 86  FSPNEISIKTVDGFILVEGKHEEKEDEH--------GFISRQFKRRYLLPKDVEIEKVTS 137
               E+ ++  DG +LV      KE E            S +F RR+ L +D ++E+V +
Sbjct: 63  VKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA 122

Query: 138 SLSSDGVLTITAPKRV 153
            L  +GVLT+T PK  
Sbjct: 123 GLE-NGVLTVTVPKAE 137


>d1h12a_ a.102.1.2 (A:) Endo-1,4-beta-xylanase {Pseudoalteromonas
           haloplanktis [TaxId: 228]}
          Length = 404

 Score = 27.3 bits (60), Expect = 0.93
 Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 5   PLLFRDWWDDFDRPSRLLDQHFGLGLRRDDLLSN---WSSLAQSAR 47
            + F  + D+   PS  +   +          ++   W  +A  +R
Sbjct: 188 IIRFSPYIDNLTDPSYHIPAFYDYFANNVTNQADKNYWRQVATKSR 233


>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
           cress (Arabidopsis thaliana), mitochondrial isoform
           [TaxId: 3702]}
          Length = 270

 Score = 25.4 bits (54), Expect = 3.8
 Identities = 13/77 (16%), Positives = 27/77 (35%)

Query: 48  PIGAGYLRPWRSLARSNSGVSNITNEENKVQVILDVQQFSPNEISIKTVDGFILVEGKHE 107
           P+G G    WR L     G+  +T ++ K++   +  +    +     V  F+       
Sbjct: 13  PLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPG 72

Query: 108 EKEDEHGFISRQFKRRY 124
           E ++     S+      
Sbjct: 73  EFDEALWLNSKAVANFI 89


>d1koea_ d.169.1.5 (A:) Endostatin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 172

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 9/76 (11%)

Query: 6   LLFRDWWDDFDRPSRLLDQHF------GLGLRRDDLLSN---WSSLAQSARPIGAGYLRP 56
           +L   W   F      L          G  + R         W     S R +   Y   
Sbjct: 72  VLSPSWDSLFSGSQGQLQPGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCET 131

Query: 57  WRSLARSNSGVSNITN 72
           WR+     +G ++   
Sbjct: 132 WRTETTGATGQASSLL 147


>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 24.7 bits (53), Expect = 6.4
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 7   LFRDWWDDFDRPSRLLDQHFG 27
           L RDW +D    + L   H  
Sbjct: 171 LHRDWRNDIAGLATLFSNHIP 191


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 638,689
Number of extensions: 27611
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 12
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)