BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14969
(687 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 539 MYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
+ KT ++ ++M+ DR + NPY D + + +++P A +LE +L G
Sbjct: 21 IIKTDKVFEVMLATDRSHYA--KCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEG 78
Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
LDVG+GSG AC MV GKV +DH++ LV+ S N+RK+ LL G V ++
Sbjct: 79 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 138
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 549 MIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGS 608
M + DRK + P RNPY D + +++P A +LE LKPG +LDVG+GS
Sbjct: 38 MKETDRKHYSP--RNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGS 95
Query: 609 GYTAACLGYMVRPHG-----KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM----- 658
GY AC ++ G ++ ++H LV SK N+ + +LD G + I+
Sbjct: 96 GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR 155
Query: 659 RTLPPQQDASRVNI 672
+ PP + +++
Sbjct: 156 KGYPPNAPYNAIHV 169
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 533 CVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPAL 592
+ + D+Y T M++VDR + PY D V + + +++P A SL+ +
Sbjct: 24 IIDDDDVYNT------MLQVDRGKYIK--EIPYIDTPVYISHGVTISAPHMHALSLKRLI 75
Query: 593 LKLKPGDTVLDVGTGSGYTAACLG----YMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
LKPG +DVG+GSGY C+ + + V L+ ++ LVNFS ENI+++
Sbjct: 76 NVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE 135
Query: 649 LL 650
LL
Sbjct: 136 LL 137
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 541 KTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFI-ASSLEPALLKLKPGD 599
K+K + D ++KV R++F P + Y LE Y + S I + LL LKPG
Sbjct: 21 KSKRVIDALLKVPREEFLPEHLKEYAYVDTPLE-IGYGQTISAIHMVGMMCELLDLKPGM 79
Query: 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
VL++GTG GY AA +V G V S++ + L ++ +RK
Sbjct: 80 KVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
LK G TVLDVGTG+G+ L MV GKVY++D E +VN++ E + K
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK 84
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF 637
+++P +A LE A LKPG +L+VGTGSG+ AA + +V+ VY+++ + LV F
Sbjct: 74 VSAPHMVAIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEF 129
Query: 638 SKENIRK 644
+K N+ +
Sbjct: 130 AKRNLER 136
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 562 RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRP 621
R DY V+++ + + P I L +++ + PGDTVL+ G+GSG + L V
Sbjct: 72 RPALEDYVVLMKRGTAITFPKDINMIL--SMMDINPGDTVLEAGSGSGGMSLFLSKAVGS 129
Query: 622 HGKVYSL----DHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEPQ 677
G+V S DH + +KN+ H D ++ + P D +IS +
Sbjct: 130 QGRVISFEVRKDHHDL--------AKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181
Query: 678 KSGEIKFKA 686
+ F A
Sbjct: 182 DIKSLTFDA 190
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVN 636
Y SFIA +L +K GD ++D G GSG A L V GKV++ + E
Sbjct: 97 YPKDSSFIA-----MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAK 151
Query: 637 FSKENIRK 644
++ N+ K
Sbjct: 152 LAESNLTK 159
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 541 KTKELRDLMIKVDRKDFCPPNRNPY-----HDYSVMLE--NCSYLNSPSFIASSLEPALL 593
KT+EL + KVDR F P N Y H+ +L N + LN F L+
Sbjct: 12 KTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFXLDELD---- 67
Query: 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFS 638
L G VL++GTG GY A + +V KV S++ E N++
Sbjct: 68 -LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKXYNYA 108
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643
++L A + PGD +++ G GSG L +V P G+V S + E + ENI+
Sbjct: 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK 139
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643
++L A + PGD +++ G GSG L +V P G+V S + E + ENI+
Sbjct: 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK 139
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEY---- 633
++ P +A E LL+L P VL++GTGSGY A L ++V+ V + +++
Sbjct: 60 ISQPYMVARMTE--LLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARR 117
Query: 634 -LVNFSKENIRKNHA 647
L N N+ H
Sbjct: 118 RLKNLDLHNVSTRHG 132
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 528 MLVALCVSEFDMYK---TKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFI 584
M+ + VS D ++ EL D +++ K+ P R + + N +
Sbjct: 1 MVEVVSVSRHDRWRGVYVVELEDGSLRIATKNLVPGQR--VYGERIFRYNGEEYREWNAY 58
Query: 585 ASSLEPALLK------LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
S L ALLK +K GD +L +G SG TA+ + ++ P G++Y ++
Sbjct: 59 RSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVE 109
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 573 ENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHME 632
E S + PS +A +E + L G VL++G G+GY AA + +V G V S+++
Sbjct: 53 EEYSTSSQPSLMALFME--WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR 110
Query: 633 YLVNFSKENIRK 644
+ +K N+ +
Sbjct: 111 KICEIAKRNVER 122
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD----HMEYLVNFSK 639
AS++ +L KPG+TV+D+ G L +++ GK+Y+ D M+ L +F K
Sbjct: 247 ASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVK 305
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 545 LRDLMIKVDRKDFCPPNRNPY--HDYSVMLENCSYLNSPSFI---------ASSLEPALL 593
++DL+ ++++K F R P+ + + E S ++P F+ +S P L
Sbjct: 56 VQDLVKRLNKKGF-QFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSXYPPVAL 114
Query: 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG 653
KPG+ V D G + L + R G +Y+ D E +R+ +L G
Sbjct: 115 DPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDE-------NRLRETRLNLSRLG 167
Query: 654 VVNIM 658
V+N++
Sbjct: 168 VLNVI 172
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
+KPG +VL +G SG TA+ + +V GK+Y ++
Sbjct: 78 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 112
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEY----LVNFSK--------- 639
+ +KPG VL +G SG T + + +V P G VY+++ L+N +K
Sbjct: 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI 132
Query: 640 ENIRKNHAHLLDEGVVNIMRTLPPQQDASRV 670
E+ R H + V+++ Q D +R+
Sbjct: 133 EDARHPHKYRXLIAXVDVIFADVAQPDQTRI 163
>pdb|1PMY|A Chain A, Refined Crystal Structure Of Pseudoazurin From
Methylobacterium Extorquens Am1 At 1.5 Angstroms
Resolution
Length = 123
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVY--SLDHMEYLVNFSKENI 642
+PAL++LKPGD++ + T G+ + M P G Y + E +V F KE +
Sbjct: 18 FDPALVRLKPGDSIKFLPTDKGHNVETIKGMA-PDGADYVKTTVGQEAVVKFDKEGV 73
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 595 LKPGDTVLDVGTGSGYTAAC---LGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
L+PGD VLD+GTGSG A LG GK +D ++ ++ N ++N
Sbjct: 118 LRPGDKVLDLGTGSGVLAIAAEKLG------GKALGVDIDPMVLPQAEANAKRN 165
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 595 LKPGDTVLDVGTGSGYTAAC---LGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
L+PGD VLD+GTGSG A LG GK +D ++ ++ N ++N
Sbjct: 118 LRPGDKVLDLGTGSGVLAIAAEKLG------GKALGVDIDPMVLPQAEANAKRN 165
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
L K+ ++++GT +GY++ C + GK+ D E N +++ ++N
Sbjct: 55 LTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN 108
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
L LK DTV ++GTG G+ L + + +V S++ +L N S E ++ N
Sbjct: 25 LNLKETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLN 74
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 556 DFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPAL-------LKLKPGDTVLDVGTGS 608
DF ++P YS C+Y P + A L LKPG T+LD+G G
Sbjct: 47 DFFALFQDPTRTYS-----CAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGW 101
Query: 609 GYT 611
G T
Sbjct: 102 GTT 104
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
+K GDTV+D G+G A L +V +G+V+ D
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFD 54
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
+KPG +VL +G SG TA+ + +V GK+Y ++
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIE 105
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI 642
G TVLD+G G+G +V HGKV +D ++ + +++ +
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYV 128
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVN 636
N+ +FI + L L K GD+VLD+G G G L Y G+ Y +D E +N
Sbjct: 48 NANNFIKACL--IRLYTKRGDSVLDLGCGKG--GDLLKYERAGIGEYYGVDIAEVSIN 101
>pdb|1BQK|A Chain A, Oxidized Pseudoazurin
pdb|1BQR|A Chain A, Reduced Pseudoazurin
pdb|1ZIA|A Chain A, Oxidized Pseudoazurin
pdb|1ZIB|A Chain A, Reduced Pseudoazurin
Length = 124
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG 623
A EPA LK+ PGDTV + T G+ + M+ P G
Sbjct: 15 AMVFEPASLKVAPGDTVTFIPTDKGHNVETIKGMI-PDG 52
>pdb|2UX6|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Oxidized Form, Ph 7.5
pdb|2UX7|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Reduced Form, Ph 7.5
pdb|2UXF|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Oxidized Form, Ph 5.5
pdb|2UXG|A Chain A, Pseudoazurin With Engineered Amicyanin Ligand Loop,
Reduced Form, Ph 5.5
Length = 122
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG 623
A EPA LK+ PGDTV + T G+ + M+ P G
Sbjct: 15 AMVFEPASLKVAPGDTVTFIPTDKGHNVETIKGMI-PDG 52
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643
LL L PG VL+ GTGSG L V G V S + + + ++ N+R
Sbjct: 91 LLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR 142
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640
L+KL V+D+GT +GY+A G + G + + D E +KE
Sbjct: 59 LVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKE 107
>pdb|2JKW|A Chain A, Pseudoazurin M16f
pdb|2JKW|B Chain B, Pseudoazurin M16f
Length = 124
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG 623
EPA LK+ PGDTV + T G+ + M+ P G
Sbjct: 18 FEPASLKVAPGDTVTFIPTDKGHNVETIKGMI-PDG 52
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L L D V+DVG GSG + + VY++D+++ + +K+N+ K
Sbjct: 31 LNLNKDDVVVDVGCGSGGXTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAK 79
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
+KPG +VL +G SG TA+ + +V GK++ ++
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIE 105
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
++KPG+ +L++G G G +A L V G V +D
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,378,861
Number of Sequences: 62578
Number of extensions: 791380
Number of successful extensions: 1953
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1917
Number of HSP's gapped (non-prelim): 36
length of query: 687
length of database: 14,973,337
effective HSP length: 105
effective length of query: 582
effective length of database: 8,402,647
effective search space: 4890340554
effective search space used: 4890340554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)