Query psy14969
Match_columns 687
No_of_seqs 270 out of 2852
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 17:10:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 99.9 6E-26 1.3E-30 223.3 15.7 143 528-681 4-153 (209)
2 PF01135 PCMT: Protein-L-isoas 99.9 1.5E-25 3.2E-30 218.3 13.3 142 532-680 7-155 (209)
3 PRK13942 protein-L-isoaspartat 99.9 6.7E-23 1.4E-27 196.8 16.6 142 527-676 7-155 (212)
4 PRK13944 protein-L-isoaspartat 99.9 1.1E-21 2.5E-26 186.8 16.6 142 528-676 4-152 (205)
5 TIGR00080 pimt protein-L-isoas 99.9 2E-21 4.3E-26 185.4 16.6 143 528-678 9-158 (215)
6 KOG1661|consensus 99.9 1.3E-21 2.7E-26 194.4 12.1 161 514-679 1-175 (237)
7 PRK00312 pcm protein-L-isoaspa 99.8 4.2E-19 9.2E-24 168.1 16.8 140 524-675 7-153 (212)
8 PRK13943 protein-L-isoaspartat 99.8 7.5E-18 1.6E-22 173.9 15.7 135 532-675 12-158 (322)
9 PRK11088 rrmA 23S rRNA methylt 99.7 9.8E-19 2.1E-23 172.6 3.1 154 490-682 1-167 (272)
10 PF12847 Methyltransf_18: Meth 99.2 9.9E-11 2.1E-15 98.6 10.8 73 597-674 1-78 (112)
11 COG2242 CobL Precorrin-6B meth 99.1 9.6E-10 2.1E-14 108.0 12.0 93 575-675 14-111 (187)
12 PF01209 Ubie_methyltran: ubiE 99.1 4.7E-10 1E-14 111.3 9.7 86 586-678 38-128 (233)
13 TIGR03533 L3_gln_methyl protei 99.1 4.3E-10 9.2E-15 113.8 9.4 129 540-673 56-196 (284)
14 PF13847 Methyltransf_31: Meth 99.1 1E-09 2.2E-14 99.1 10.7 73 596-673 2-80 (152)
15 COG2226 UbiE Methylase involve 99.1 9.1E-10 2E-14 110.9 10.8 81 594-680 48-133 (238)
16 TIGR02469 CbiT precorrin-6Y C5 99.0 3.2E-09 6.9E-14 90.0 12.2 88 580-675 4-97 (124)
17 COG4122 Predicted O-methyltran 99.0 2.7E-09 5.8E-14 106.6 13.2 95 581-681 45-147 (219)
18 PRK00377 cbiT cobalt-precorrin 99.0 2.7E-09 5.9E-14 101.3 12.1 92 577-674 22-119 (198)
19 PLN02781 Probable caffeoyl-CoA 99.0 1.6E-09 3.4E-14 107.0 10.7 79 594-676 65-154 (234)
20 PRK08287 cobalt-precorrin-6Y C 99.0 3.6E-09 7.9E-14 99.0 12.5 90 577-674 13-105 (187)
21 PRK11805 N5-glutamine S-adenos 99.0 1.4E-09 3E-14 111.7 9.1 129 540-673 68-208 (307)
22 PF08704 GCD14: tRNA methyltra 99.0 4E-09 8.8E-14 106.6 11.9 97 572-674 17-121 (247)
23 PF01596 Methyltransf_3: O-met 99.0 1.3E-09 2.9E-14 106.7 8.2 80 595-678 43-133 (205)
24 TIGR02752 MenG_heptapren 2-hep 99.0 6.4E-09 1.4E-13 99.2 12.1 83 585-674 35-122 (231)
25 PRK07402 precorrin-6B methylas 99.0 6.5E-09 1.4E-13 98.2 11.8 81 575-663 20-100 (196)
26 PRK15451 tRNA cmo(5)U34 methyl 98.9 5.4E-09 1.2E-13 102.8 11.3 87 583-673 42-132 (247)
27 PRK14966 unknown domain/N5-glu 98.9 3.1E-09 6.6E-14 114.8 10.1 125 540-672 190-325 (423)
28 PF06325 PrmA: Ribosomal prote 98.9 5.1E-09 1.1E-13 108.1 11.2 86 582-673 146-232 (295)
29 PLN02476 O-methyltransferase 98.9 2.3E-09 5E-14 110.1 8.6 93 578-676 101-204 (278)
30 PRK01544 bifunctional N5-gluta 98.9 2.7E-09 5.9E-14 116.3 9.1 128 540-672 51-212 (506)
31 PRK00107 gidB 16S rRNA methylt 98.9 1.2E-08 2.6E-13 98.6 11.4 74 594-673 42-119 (187)
32 PLN02233 ubiquinone biosynthes 98.9 1.2E-08 2.7E-13 101.7 11.7 80 594-675 70-154 (261)
33 COG2890 HemK Methylase of poly 98.9 1.2E-08 2.6E-13 103.8 10.9 83 563-647 76-159 (280)
34 TIGR00138 gidB 16S rRNA methyl 98.9 9.3E-09 2E-13 98.1 9.2 71 597-673 42-116 (181)
35 COG2519 GCD14 tRNA(1-methylade 98.9 1.1E-08 2.5E-13 104.5 10.3 93 575-673 74-170 (256)
36 TIGR00536 hemK_fam HemK family 98.8 2.2E-08 4.8E-13 100.7 11.9 106 563-673 78-189 (284)
37 PLN02589 caffeoyl-CoA O-methyl 98.8 1.7E-08 3.7E-13 101.8 10.4 91 581-677 65-167 (247)
38 TIGR00740 methyltransferase, p 98.8 4E-08 8.7E-13 95.3 12.4 76 595-674 51-130 (239)
39 PF05175 MTS: Methyltransferas 98.8 2.9E-08 6.3E-13 92.7 10.4 81 585-673 21-105 (170)
40 TIGR02021 BchM-ChlM magnesium 98.8 3.9E-08 8.5E-13 94.0 11.5 84 583-673 41-126 (219)
41 PRK00517 prmA ribosomal protei 98.8 3E-08 6.5E-13 97.9 11.0 81 584-673 106-186 (250)
42 COG2264 PrmA Ribosomal protein 98.8 1.6E-08 3.5E-13 105.2 9.4 87 583-673 148-236 (300)
43 COG2230 Cfa Cyclopropane fatty 98.8 3.6E-08 7.9E-13 102.0 10.8 80 586-673 63-144 (283)
44 PLN02244 tocopherol O-methyltr 98.8 5.9E-08 1.3E-12 100.4 11.9 74 596-675 117-195 (340)
45 PRK00121 trmB tRNA (guanine-N( 98.8 3.6E-08 7.8E-13 94.7 9.6 73 597-675 40-120 (202)
46 PRK09328 N5-glutamine S-adenos 98.7 6.6E-08 1.4E-12 94.3 11.3 105 563-673 73-182 (275)
47 PRK00274 ksgA 16S ribosomal RN 98.7 4.3E-08 9.4E-13 98.4 10.1 78 578-668 25-102 (272)
48 PRK11207 tellurite resistance 98.7 8E-08 1.7E-12 91.8 10.8 72 595-674 28-103 (197)
49 PF02353 CMAS: Mycolic acid cy 98.7 4.4E-08 9.6E-13 99.6 9.5 82 584-673 51-134 (273)
50 TIGR03534 RF_mod_PrmC protein- 98.7 8.9E-08 1.9E-12 91.6 11.0 99 565-672 55-160 (251)
51 PRK13168 rumA 23S rRNA m(5)U19 98.7 9E-08 2E-12 102.1 12.1 86 583-680 285-379 (443)
52 TIGR00406 prmA ribosomal prote 98.7 1.1E-07 2.5E-12 96.1 12.1 85 584-674 146-233 (288)
53 PRK11036 putative S-adenosyl-L 98.7 8.6E-08 1.9E-12 94.2 10.8 71 596-673 43-119 (255)
54 PRK11873 arsM arsenite S-adeno 98.7 6.9E-08 1.5E-12 95.1 10.0 76 594-674 74-154 (272)
55 PRK07580 Mg-protoporphyrin IX 98.7 1.5E-07 3.2E-12 89.2 11.6 84 583-673 48-134 (230)
56 TIGR00477 tehB tellurite resis 98.7 1.1E-07 2.4E-12 90.8 10.6 79 584-673 19-101 (195)
57 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1.2E-07 2.7E-12 94.7 11.1 76 594-674 68-148 (264)
58 PRK14901 16S rRNA methyltransf 98.7 1.2E-07 2.6E-12 101.1 11.6 78 594-677 249-335 (434)
59 PRK03522 rumB 23S rRNA methylu 98.7 1.5E-07 3.1E-12 96.3 11.5 74 597-680 173-252 (315)
60 PF13649 Methyltransf_25: Meth 98.7 8.5E-08 1.8E-12 81.3 8.1 68 601-674 1-75 (101)
61 PTZ00338 dimethyladenosine tra 98.7 1.1E-07 2.5E-12 97.7 10.6 89 574-671 14-106 (294)
62 PRK14904 16S rRNA methyltransf 98.7 1.7E-07 3.6E-12 100.3 12.1 76 594-674 247-326 (445)
63 PRK14896 ksgA 16S ribosomal RN 98.7 1.4E-07 3.1E-12 93.9 10.7 78 578-667 12-89 (258)
64 PRK08317 hypothetical protein; 98.7 2.7E-07 5.9E-12 85.8 11.8 83 583-673 7-94 (241)
65 TIGR00537 hemK_rel_arch HemK-r 98.7 1.9E-07 4E-12 87.0 10.7 70 595-673 17-89 (179)
66 PF13659 Methyltransf_26: Meth 98.7 1.2E-07 2.6E-12 80.8 8.7 70 598-673 1-77 (117)
67 PRK14103 trans-aconitate 2-met 98.6 1.2E-07 2.6E-12 93.0 9.2 75 585-674 19-97 (255)
68 TIGR03704 PrmC_rel_meth putati 98.6 2.9E-07 6.2E-12 92.0 11.8 85 562-647 49-135 (251)
69 smart00650 rADc Ribosomal RNA 98.6 1.8E-07 3.8E-12 86.8 9.5 76 585-672 3-83 (169)
70 PRK14902 16S rRNA methyltransf 98.6 2.6E-07 5.6E-12 98.5 12.0 83 585-674 240-328 (444)
71 PRK14903 16S rRNA methyltransf 98.6 2.4E-07 5.2E-12 99.3 11.6 78 594-677 234-317 (431)
72 PRK14967 putative methyltransf 98.6 3.3E-07 7.1E-12 88.7 11.4 72 594-673 33-108 (223)
73 PRK01683 trans-aconitate 2-met 98.6 2.3E-07 5E-12 90.4 10.3 79 584-675 20-102 (258)
74 TIGR00479 rumA 23S rRNA (uraci 98.6 1.9E-07 4.2E-12 98.6 10.5 86 583-680 280-374 (431)
75 TIGR03587 Pse_Me-ase pseudamin 98.6 1.4E-07 3E-12 91.7 8.5 69 594-673 40-112 (204)
76 PRK04266 fibrillarin; Provisio 98.6 3.1E-07 6.8E-12 91.1 10.9 86 582-675 56-150 (226)
77 PRK00216 ubiE ubiquinone/menaq 98.6 6E-07 1.3E-11 84.4 12.0 85 583-673 39-128 (239)
78 COG2263 Predicted RNA methylas 98.6 4.4E-07 9.5E-12 90.2 11.5 93 576-678 23-118 (198)
79 PRK12335 tellurite resistance 98.6 3.2E-07 6.9E-12 92.4 10.3 69 597-674 120-192 (287)
80 TIGR00563 rsmB ribosomal RNA s 98.6 4.6E-07 1E-11 96.3 11.8 83 585-674 228-317 (426)
81 TIGR00091 tRNA (guanine-N(7)-) 98.5 2.9E-07 6.3E-12 87.7 9.0 73 597-675 16-96 (194)
82 smart00828 PKS_MT Methyltransf 98.5 4.1E-07 8.9E-12 86.5 9.9 69 599-672 1-73 (224)
83 PRK04457 spermidine synthase; 98.5 3.8E-07 8.3E-12 91.8 10.1 75 595-674 64-144 (262)
84 TIGR00755 ksgA dimethyladenosi 98.5 4E-07 8.7E-12 90.0 9.8 79 577-667 11-89 (253)
85 KOG2904|consensus 98.5 5.4E-07 1.2E-11 94.1 10.9 108 544-658 89-204 (328)
86 PRK15001 SAM-dependent 23S rib 98.5 5.2E-07 1.1E-11 96.2 10.9 89 585-679 218-310 (378)
87 PRK10901 16S rRNA methyltransf 98.5 6.9E-07 1.5E-11 95.1 11.8 80 586-674 235-321 (427)
88 PLN02396 hexaprenyldihydroxybe 98.5 2.9E-07 6.2E-12 96.0 8.7 71 596-673 130-205 (322)
89 PLN02672 methionine S-methyltr 98.5 4.8E-07 1E-11 107.0 11.5 109 562-672 81-209 (1082)
90 PRK14968 putative methyltransf 98.5 1.4E-06 3E-11 79.6 11.6 71 595-672 21-96 (188)
91 PRK10909 rsmD 16S rRNA m(2)G96 98.5 8.2E-07 1.8E-11 86.9 10.7 88 583-680 40-134 (199)
92 TIGR02716 C20_methyl_CrtF C-20 98.5 1.3E-06 2.9E-11 88.0 12.1 83 584-674 138-223 (306)
93 PRK06202 hypothetical protein; 98.5 9.5E-07 2.1E-11 85.5 10.3 74 595-674 58-137 (232)
94 TIGR01177 conserved hypothetic 98.5 1.1E-06 2.4E-11 90.3 11.3 85 579-673 166-255 (329)
95 TIGR02085 meth_trns_rumB 23S r 98.5 8.5E-07 1.8E-11 93.2 10.5 75 596-680 232-312 (374)
96 PLN02585 magnesium protoporphy 98.5 1.5E-06 3.3E-11 90.4 12.2 89 582-673 128-219 (315)
97 PF08241 Methyltransf_11: Meth 98.5 6E-07 1.3E-11 72.2 7.3 63 602-674 1-68 (95)
98 PLN02336 phosphoethanolamine N 98.4 9.3E-07 2E-11 94.0 10.7 80 584-673 255-339 (475)
99 PRK09489 rsmC 16S ribosomal RN 98.4 1.1E-06 2.3E-11 92.3 10.8 80 585-673 186-268 (342)
100 COG4123 Predicted O-methyltran 98.4 7E-07 1.5E-11 91.1 9.2 85 583-673 31-122 (248)
101 PTZ00098 phosphoethanolamine N 98.4 1.1E-06 2.3E-11 88.1 10.3 79 584-673 41-124 (263)
102 PRK10258 biotin biosynthesis p 98.4 3.7E-07 7.9E-12 88.9 6.7 77 583-674 30-111 (251)
103 KOG0820|consensus 98.4 8.7E-07 1.9E-11 92.4 9.8 89 569-666 31-120 (315)
104 PLN03075 nicotianamine synthas 98.4 1.8E-06 3.9E-11 89.9 11.7 75 596-674 122-203 (296)
105 TIGR02143 trmA_only tRNA (urac 98.4 1.7E-06 3.7E-11 90.6 11.0 58 598-663 198-255 (353)
106 PRK11705 cyclopropane fatty ac 98.4 2.1E-06 4.6E-11 91.0 11.4 77 585-673 157-235 (383)
107 TIGR02072 BioC biotin biosynth 98.4 1.8E-06 3.9E-11 80.8 9.5 81 583-673 19-105 (240)
108 KOG1540|consensus 98.4 1.5E-06 3.2E-11 90.2 9.4 73 594-668 97-174 (296)
109 PRK05031 tRNA (uracil-5-)-meth 98.4 1.8E-06 4E-11 90.5 10.4 58 598-663 207-264 (362)
110 PRK05785 hypothetical protein; 98.4 7.6E-07 1.6E-11 87.5 7.0 66 596-676 50-120 (226)
111 PTZ00146 fibrillarin; Provisio 98.4 1.7E-06 3.7E-11 90.1 9.9 89 583-678 117-214 (293)
112 PRK15068 tRNA mo(5)U34 methylt 98.3 2.7E-06 5.9E-11 88.1 10.8 80 586-673 113-196 (322)
113 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 4.2E-06 9E-11 78.0 11.0 81 585-674 29-114 (223)
114 COG2227 UbiG 2-polyprenyl-3-me 98.3 6.5E-07 1.4E-11 91.3 6.1 67 597-672 59-130 (243)
115 KOG1663|consensus 98.3 2.3E-06 5E-11 87.1 10.0 78 594-675 70-158 (237)
116 PF08242 Methyltransf_12: Meth 98.3 1.1E-07 2.4E-12 79.7 0.4 70 602-674 1-74 (99)
117 KOG1270|consensus 98.3 7.4E-07 1.6E-11 92.3 6.2 71 598-672 90-164 (282)
118 TIGR03840 TMPT_Se_Te thiopurin 98.3 5.2E-06 1.1E-10 81.7 11.6 84 579-671 19-118 (213)
119 PF05958 tRNA_U5-meth_tr: tRNA 98.3 1.5E-06 3.2E-11 91.0 8.1 87 583-680 185-290 (352)
120 PRK14121 tRNA (guanine-N(7)-)- 98.3 4E-06 8.6E-11 90.3 11.3 74 595-674 120-200 (390)
121 PF03848 TehB: Tellurite resis 98.3 4.4E-06 9.6E-11 82.3 10.3 79 584-673 19-101 (192)
122 PRK00811 spermidine synthase; 98.3 4.4E-06 9.5E-11 84.9 10.5 79 596-675 75-159 (283)
123 COG2813 RsmC 16S RNA G1207 met 98.3 4.8E-06 1E-10 87.2 10.8 87 585-680 148-237 (300)
124 PRK06922 hypothetical protein; 98.3 3E-06 6.5E-11 96.3 10.0 72 595-673 416-494 (677)
125 KOG2915|consensus 98.2 4.2E-06 9E-11 87.5 9.3 97 571-673 81-184 (314)
126 PRK11727 23S rRNA mA1618 methy 98.2 5.1E-06 1.1E-10 87.2 10.1 58 597-659 114-172 (321)
127 TIGR00452 methyltransferase, p 98.2 6.1E-06 1.3E-10 86.1 10.5 74 594-673 118-195 (314)
128 TIGR03438 probable methyltrans 98.2 5.6E-06 1.2E-10 84.4 10.0 66 594-663 60-125 (301)
129 PRK15128 23S rRNA m(5)C1962 me 98.2 6.1E-06 1.3E-10 88.3 10.0 75 596-678 219-303 (396)
130 COG2265 TrmA SAM-dependent met 98.2 4.8E-06 1E-10 90.3 9.2 89 582-682 280-376 (432)
131 PRK05134 bifunctional 3-demeth 98.2 9.8E-06 2.1E-10 77.8 10.2 71 594-673 45-121 (233)
132 PRK11783 rlmL 23S rRNA m(2)G24 98.2 5E-06 1.1E-10 94.2 9.1 71 597-673 538-615 (702)
133 PRK11188 rrmJ 23S rRNA methylt 98.2 4.9E-06 1.1E-10 81.1 7.8 70 595-680 49-131 (209)
134 COG0030 KsgA Dimethyladenosine 98.2 8.4E-06 1.8E-10 83.8 9.6 79 578-668 13-91 (259)
135 PRK00050 16S rRNA m(4)C1402 me 98.1 6.7E-06 1.5E-10 85.5 8.8 85 581-674 5-98 (296)
136 PLN02490 MPBQ/MSBQ methyltrans 98.1 1.1E-05 2.5E-10 85.1 10.0 69 596-673 112-185 (340)
137 TIGR00438 rrmJ cell division p 98.1 7.3E-06 1.6E-10 77.2 7.2 41 594-634 29-69 (188)
138 PLN02336 phosphoethanolamine N 98.1 1.3E-05 2.7E-10 85.5 9.2 77 586-674 28-111 (475)
139 PHA03412 putative methyltransf 98.1 1.4E-05 3E-10 81.7 9.0 66 574-643 30-97 (241)
140 PF05401 NodS: Nodulation prot 98.1 1.2E-05 2.5E-10 80.5 8.2 66 598-673 44-113 (201)
141 TIGR01983 UbiG ubiquinone bios 98.1 2.6E-05 5.6E-10 74.0 10.0 85 581-673 27-119 (224)
142 PRK13255 thiopurine S-methyltr 98.0 4.2E-05 9.1E-10 75.6 11.6 64 595-664 35-108 (218)
143 PHA03411 putative methyltransf 98.0 2E-05 4.3E-10 81.9 9.6 84 574-672 45-132 (279)
144 TIGR02081 metW methionine bios 98.0 1.6E-05 3.5E-10 75.2 8.1 44 595-640 11-54 (194)
145 COG4106 Tam Trans-aconitate me 98.0 5.6E-06 1.2E-10 84.5 5.2 70 594-674 27-100 (257)
146 TIGR00095 RNA methyltransferas 98.0 6.3E-05 1.4E-09 72.7 12.0 60 597-662 49-108 (189)
147 PLN02366 spermidine synthase 98.0 4.6E-05 1E-09 79.4 11.9 79 595-675 89-174 (308)
148 TIGR00417 speE spermidine synt 98.0 5.1E-05 1.1E-09 76.3 10.7 77 596-674 71-153 (270)
149 KOG1541|consensus 98.0 1.4E-05 2.9E-10 82.0 6.4 58 579-641 32-91 (270)
150 PRK11933 yebU rRNA (cytosine-C 98.0 5.4E-05 1.2E-09 83.1 11.4 78 594-677 110-193 (470)
151 KOG2187|consensus 97.9 1.6E-05 3.4E-10 88.3 7.1 91 580-680 368-467 (534)
152 cd02440 AdoMet_MTases S-adenos 97.9 5E-05 1.1E-09 59.3 7.8 67 600-673 1-73 (107)
153 KOG3420|consensus 97.9 1.7E-05 3.7E-10 77.4 6.1 85 572-664 21-107 (185)
154 PF07021 MetW: Methionine bios 97.9 3.6E-05 7.8E-10 76.6 7.6 65 595-673 11-82 (193)
155 PF02475 Met_10: Met-10+ like- 97.9 6.8E-05 1.5E-09 74.2 9.3 76 594-674 98-177 (200)
156 PF01170 UPF0020: Putative RNA 97.9 8.8E-05 1.9E-09 71.0 9.7 82 578-666 11-101 (179)
157 PF09445 Methyltransf_15: RNA 97.8 5.2E-05 1.1E-09 73.3 7.5 56 600-662 2-57 (163)
158 PF00398 RrnaAD: Ribosomal RNA 97.8 8.5E-05 1.8E-09 74.5 9.0 79 577-667 12-90 (262)
159 TIGR01444 fkbM_fam methyltrans 97.8 8.8E-05 1.9E-09 65.8 7.9 47 600-647 1-47 (143)
160 PF13489 Methyltransf_23: Meth 97.8 9E-05 2E-09 65.4 7.8 40 595-637 20-59 (161)
161 PRK01581 speE spermidine synth 97.8 0.00011 2.4E-09 79.1 10.0 79 595-674 148-234 (374)
162 PRK03612 spermidine synthase; 97.8 0.00012 2.6E-09 80.7 10.1 79 595-674 295-381 (521)
163 PF13679 Methyltransf_32: Meth 97.7 0.00012 2.6E-09 67.0 8.3 64 596-661 24-90 (141)
164 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00015 3.3E-09 77.5 10.1 74 598-679 58-136 (382)
165 PRK13256 thiopurine S-methyltr 97.7 0.00021 4.5E-09 72.1 10.4 88 579-672 28-130 (226)
166 PF02390 Methyltransf_4: Putat 97.7 0.00021 4.6E-09 69.6 9.9 70 599-674 19-96 (195)
167 smart00138 MeTrc Methyltransfe 97.7 7.4E-05 1.6E-09 75.5 6.2 47 596-642 98-152 (264)
168 KOG1499|consensus 97.6 0.00015 3.3E-09 77.5 8.2 63 595-664 58-120 (346)
169 PRK04148 hypothetical protein; 97.6 0.00044 9.4E-09 65.4 10.3 43 596-641 15-58 (134)
170 KOG3191|consensus 97.6 0.00045 9.8E-09 69.4 10.9 79 598-682 44-128 (209)
171 KOG1271|consensus 97.6 0.0002 4.3E-09 72.1 8.2 62 597-663 67-128 (227)
172 PF05724 TPMT: Thiopurine S-me 97.6 0.00018 3.9E-09 71.5 7.2 87 579-671 22-121 (218)
173 KOG1500|consensus 97.5 0.00023 4.9E-09 76.9 8.1 76 596-678 176-253 (517)
174 PF05185 PRMT5: PRMT5 arginine 97.5 0.00039 8.4E-09 76.1 9.7 71 598-672 187-264 (448)
175 PF10294 Methyltransf_16: Puta 97.5 0.00082 1.8E-08 63.9 9.9 75 594-672 42-125 (173)
176 COG4976 Predicted methyltransf 97.4 0.00011 2.3E-09 76.0 3.7 58 579-641 109-166 (287)
177 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.0012 2.7E-08 75.3 12.1 81 579-665 173-295 (702)
178 PF08003 Methyltransf_9: Prote 97.4 0.00085 1.8E-08 71.2 9.6 41 596-638 114-154 (315)
179 TIGR00478 tly hemolysin TlyA f 97.4 0.00035 7.6E-09 70.4 6.5 40 596-637 74-113 (228)
180 COG0144 Sun tRNA and rRNA cyto 97.3 0.0018 3.9E-08 68.6 10.7 79 594-678 153-240 (355)
181 COG2520 Predicted methyltransf 97.2 0.0014 3E-08 70.1 9.3 74 595-674 186-264 (341)
182 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.0016 3.4E-08 66.9 9.4 78 594-677 82-166 (283)
183 COG1092 Predicted SAM-dependen 97.2 0.0013 2.8E-08 71.4 9.3 80 597-681 217-308 (393)
184 PLN02823 spermine synthase 97.2 0.0017 3.6E-08 68.9 9.8 77 596-674 102-184 (336)
185 TIGR00006 S-adenosyl-methyltra 97.1 0.0025 5.4E-08 67.2 9.7 85 581-674 6-100 (305)
186 KOG2899|consensus 97.1 0.00069 1.5E-08 70.5 5.4 52 594-646 55-106 (288)
187 PF03602 Cons_hypoth95: Conser 97.1 0.0024 5.3E-08 62.0 8.8 89 583-679 28-125 (183)
188 COG0220 Predicted S-adenosylme 97.1 0.0019 4.2E-08 65.2 8.1 70 599-674 50-127 (227)
189 PF02384 N6_Mtase: N-6 DNA Met 97.0 0.003 6.4E-08 63.9 9.2 95 574-673 25-132 (311)
190 COG4076 Predicted RNA methylas 97.0 0.00083 1.8E-08 68.2 5.1 61 599-667 34-94 (252)
191 TIGR02987 met_A_Alw26 type II 96.9 0.0045 9.8E-08 67.8 10.1 73 574-646 3-87 (524)
192 COG0742 N6-adenine-specific me 96.8 0.0086 1.9E-07 59.7 10.4 85 583-673 29-121 (187)
193 COG0421 SpeE Spermidine syntha 96.7 0.0075 1.6E-07 62.8 9.6 77 599-677 78-160 (282)
194 PF00891 Methyltransf_2: O-met 96.7 0.0084 1.8E-07 58.6 9.4 66 594-672 97-164 (241)
195 PF10672 Methyltrans_SAM: S-ad 96.7 0.012 2.5E-07 61.7 10.3 93 575-679 106-206 (286)
196 PF03291 Pox_MCEL: mRNA cappin 96.7 0.0089 1.9E-07 63.3 9.6 77 597-675 62-154 (331)
197 PF01564 Spermine_synth: Sperm 96.7 0.0082 1.8E-07 60.6 8.8 78 595-674 74-158 (246)
198 TIGR00308 TRM1 tRNA(guanine-26 96.6 0.0043 9.4E-08 66.7 7.2 73 599-678 46-124 (374)
199 PF08123 DOT1: Histone methyla 96.6 0.0083 1.8E-07 59.7 8.5 91 580-673 27-129 (205)
200 KOG4300|consensus 96.6 0.003 6.6E-08 64.8 5.5 69 600-675 79-154 (252)
201 PRK01544 bifunctional N5-gluta 96.6 0.0088 1.9E-07 66.3 9.1 72 597-674 347-425 (506)
202 PF01269 Fibrillarin: Fibrilla 96.6 0.011 2.4E-07 60.6 9.1 89 583-682 58-159 (229)
203 COG1041 Predicted DNA modifica 96.5 0.0096 2.1E-07 64.1 8.9 80 579-668 181-261 (347)
204 COG3963 Phospholipid N-methylt 96.5 0.0047 1E-07 61.7 5.9 79 565-646 19-97 (194)
205 COG0116 Predicted N6-adenine-s 96.4 0.019 4.2E-07 62.5 10.6 80 579-664 175-292 (381)
206 COG0357 GidB Predicted S-adeno 96.3 0.016 3.5E-07 58.6 8.6 69 598-672 68-141 (215)
207 PF05971 Methyltransf_10: Prot 96.3 0.031 6.6E-07 59.2 10.6 58 598-661 103-162 (299)
208 KOG3010|consensus 96.2 0.0069 1.5E-07 63.0 5.6 42 600-644 36-77 (261)
209 PF13578 Methyltransf_24: Meth 96.1 0.0025 5.3E-08 54.7 1.5 70 602-676 1-79 (106)
210 PF04816 DUF633: Family of unk 96.1 0.018 3.8E-07 57.4 7.7 68 601-673 1-73 (205)
211 KOG1501|consensus 96.1 0.0088 1.9E-07 66.7 6.0 56 600-661 69-124 (636)
212 PF09243 Rsm22: Mitochondrial 96.1 0.033 7.1E-07 57.1 9.7 50 597-646 33-82 (274)
213 PF02527 GidB: rRNA small subu 96.1 0.022 4.8E-07 55.9 7.9 67 600-672 51-121 (184)
214 COG0500 SmtA SAM-dependent met 96.0 0.049 1.1E-06 42.0 8.0 43 601-644 52-94 (257)
215 KOG1122|consensus 96.0 0.02 4.3E-07 63.4 7.9 79 594-678 238-323 (460)
216 PF06080 DUF938: Protein of un 95.9 0.028 6E-07 56.8 7.7 51 596-647 23-74 (204)
217 KOG2730|consensus 95.8 0.013 2.9E-07 60.6 5.3 60 597-663 94-153 (263)
218 COG3897 Predicted methyltransf 95.6 0.015 3.2E-07 59.2 4.8 70 595-672 77-148 (218)
219 PRK10742 putative methyltransf 95.6 0.089 1.9E-06 54.7 10.5 87 586-679 77-175 (250)
220 PRK00536 speE spermidine synth 95.5 0.07 1.5E-06 55.3 9.4 77 595-675 70-148 (262)
221 PF01795 Methyltransf_5: MraW 95.4 0.022 4.8E-07 60.5 5.5 72 581-661 6-77 (310)
222 PHA01634 hypothetical protein 95.3 0.056 1.2E-06 52.5 7.1 76 597-677 28-103 (156)
223 KOG1975|consensus 95.2 0.052 1.1E-06 58.9 7.5 79 595-675 115-205 (389)
224 COG0275 Predicted S-adenosylme 95.2 0.098 2.1E-06 56.0 9.4 73 581-661 9-81 (314)
225 PF05219 DREV: DREV methyltran 95.2 0.036 7.9E-07 58.0 5.9 64 597-672 94-157 (265)
226 COG2384 Predicted SAM-dependen 95.1 0.091 2E-06 54.1 8.4 74 595-673 14-92 (226)
227 COG2521 Predicted archaeal met 94.9 0.02 4.3E-07 59.9 3.2 77 594-678 131-215 (287)
228 PF01728 FtsJ: FtsJ-like methy 94.6 0.03 6.4E-07 52.5 3.4 37 597-633 23-59 (181)
229 TIGR03439 methyl_EasF probable 94.2 0.26 5.6E-06 52.5 9.6 50 594-643 73-125 (319)
230 PF07091 FmrO: Ribosomal RNA m 94.2 0.18 3.9E-06 52.6 8.3 53 594-647 102-154 (251)
231 PF11599 AviRa: RRNA methyltra 94.2 0.072 1.6E-06 55.2 5.3 49 597-645 51-100 (246)
232 PF01555 N6_N4_Mtase: DNA meth 94.1 0.19 4.2E-06 46.8 7.5 56 579-640 176-231 (231)
233 PF03059 NAS: Nicotianamine sy 94.0 0.25 5.4E-06 51.9 8.7 72 599-674 122-200 (276)
234 PRK11760 putative 23S rRNA C24 93.8 0.2 4.3E-06 54.5 7.8 64 595-673 209-277 (357)
235 PRK11524 putative methyltransf 93.4 0.31 6.8E-06 49.9 8.3 58 582-645 196-253 (284)
236 KOG2361|consensus 93.4 0.082 1.8E-06 55.3 4.1 75 599-674 73-152 (264)
237 COG1889 NOP1 Fibrillarin-like 92.7 0.47 1E-05 49.0 8.1 93 582-682 60-161 (231)
238 KOG1596|consensus 92.5 0.14 3.1E-06 54.0 4.3 81 594-679 153-239 (317)
239 PF12147 Methyltransf_20: Puta 92.4 1.8 3.9E-05 46.7 12.3 64 597-664 135-199 (311)
240 COG1565 Uncharacterized conser 92.2 1.3 2.9E-05 48.6 11.3 109 530-646 8-133 (370)
241 PRK13699 putative methylase; P 91.5 0.88 1.9E-05 45.8 8.4 59 582-646 151-209 (227)
242 KOG4589|consensus 91.4 0.26 5.7E-06 50.5 4.6 38 595-632 67-104 (232)
243 PF04989 CmcI: Cephalosporin h 91.2 0.38 8.2E-06 48.9 5.6 78 578-663 15-95 (206)
244 COG0293 FtsJ 23S rRNA methylas 90.8 0.29 6.4E-06 49.6 4.4 71 594-680 42-125 (205)
245 PF04445 SAM_MT: Putative SAM- 90.0 0.73 1.6E-05 47.6 6.5 82 594-680 70-163 (234)
246 KOG2651|consensus 89.2 0.84 1.8E-05 50.9 6.5 48 594-643 150-197 (476)
247 COG4262 Predicted spermidine s 89.1 2.3 4.9E-05 47.6 9.6 84 594-678 286-377 (508)
248 PF04672 Methyltransf_19: S-ad 89.1 1.2 2.6E-05 47.0 7.2 74 583-663 55-131 (267)
249 PF02636 Methyltransf_28: Puta 89.0 1.8 3.9E-05 43.4 8.2 48 598-645 19-73 (252)
250 COG1189 Predicted rRNA methyla 88.5 0.32 7E-06 50.7 2.7 40 596-637 78-117 (245)
251 KOG0024|consensus 87.7 1.4 3.1E-05 48.1 6.9 46 594-640 166-212 (354)
252 KOG1227|consensus 87.3 0.24 5.3E-06 53.5 1.0 75 597-677 194-273 (351)
253 COG0286 HsdM Type I restrictio 87.0 2.3 5E-05 47.5 8.3 71 575-647 166-239 (489)
254 PF05050 Methyltransf_21: Meth 87.0 1.7 3.6E-05 38.9 5.9 43 603-645 1-48 (167)
255 PF01739 CheR: CheR methyltran 86.8 0.77 1.7E-05 45.6 4.1 44 597-640 31-82 (196)
256 PLN02232 ubiquinone biosynthes 86.6 1 2.2E-05 42.3 4.6 50 626-677 1-55 (160)
257 PF03141 Methyltransf_29: Puta 85.8 0.73 1.6E-05 52.3 3.7 58 599-661 119-181 (506)
258 COG1063 Tdh Threonine dehydrog 85.7 2.4 5.3E-05 44.7 7.4 47 595-642 166-213 (350)
259 PF02005 TRM: N2,N2-dimethylgu 85.1 2.5 5.3E-05 46.1 7.2 73 597-673 49-128 (377)
260 cd00315 Cyt_C5_DNA_methylase C 84.8 2.3 5E-05 43.7 6.5 43 600-644 2-44 (275)
261 PF07757 AdoMet_MTase: Predict 83.4 1.6 3.5E-05 41.2 4.2 46 583-631 42-89 (112)
262 COG4798 Predicted methyltransf 82.8 1.3 2.9E-05 45.8 3.7 40 594-633 45-84 (238)
263 KOG3115|consensus 82.4 1.2 2.6E-05 46.4 3.3 48 599-647 62-109 (249)
264 COG1352 CheR Methylase of chem 82.4 4.7 0.0001 42.3 7.7 43 598-640 97-147 (268)
265 cd08283 FDH_like_1 Glutathione 81.1 3.8 8.3E-05 43.0 6.5 47 594-641 181-228 (386)
266 KOG2360|consensus 80.8 1.9 4.2E-05 47.9 4.4 63 594-661 210-272 (413)
267 KOG2198|consensus 80.7 4.1 8.9E-05 45.0 6.8 85 594-679 152-248 (375)
268 PRK10611 chemotaxis methyltran 80.3 2.6 5.6E-05 44.5 4.9 44 598-641 116-166 (287)
269 COG3129 Predicted SAM-dependen 78.0 3.9 8.5E-05 43.5 5.4 60 597-661 78-138 (292)
270 PF06962 rRNA_methylase: Putat 78.0 5 0.00011 38.8 5.7 55 624-682 1-64 (140)
271 KOG1709|consensus 75.1 22 0.00048 37.8 9.7 89 573-673 79-176 (271)
272 PF05891 Methyltransf_PK: AdoM 74.5 1.1 2.3E-05 46.2 0.2 44 598-644 56-100 (218)
273 PF01861 DUF43: Protein of unk 73.3 34 0.00074 36.1 10.6 85 579-671 26-117 (243)
274 PRK01747 mnmC bifunctional tRN 72.5 11 0.00024 43.1 7.5 84 599-682 59-183 (662)
275 KOG3987|consensus 71.7 0.69 1.5E-05 48.3 -1.9 88 572-671 85-174 (288)
276 KOG4058|consensus 70.9 7.1 0.00015 39.4 4.9 60 584-647 61-120 (199)
277 cd05188 MDR Medium chain reduc 70.7 20 0.00042 33.9 7.7 45 594-640 131-176 (271)
278 COG1064 AdhP Zn-dependent alco 70.5 9.8 0.00021 41.5 6.3 46 594-641 163-209 (339)
279 PF05206 TRM13: Methyltransfer 70.5 10 0.00022 39.6 6.2 40 595-634 16-59 (259)
280 cd08254 hydroxyacyl_CoA_DH 6-h 70.0 17 0.00036 36.1 7.4 45 594-640 162-207 (338)
281 PF12242 Eno-Rase_NADH_b: NAD( 67.0 22 0.00047 32.0 6.6 50 584-633 23-75 (78)
282 KOG2940|consensus 66.0 11 0.00025 40.2 5.5 67 597-672 72-143 (325)
283 PRK06194 hypothetical protein; 65.7 56 0.0012 32.3 9.9 74 597-677 5-94 (287)
284 PRK08217 fabG 3-ketoacyl-(acyl 64.6 67 0.0015 30.5 9.9 59 597-662 4-63 (253)
285 KOG1269|consensus 64.3 7.3 0.00016 42.6 3.9 80 593-678 106-190 (364)
286 PRK06949 short chain dehydroge 64.1 74 0.0016 30.6 10.2 74 597-677 8-97 (258)
287 COG0863 DNA modification methy 63.9 29 0.00062 34.7 7.7 51 594-647 219-269 (302)
288 PF11899 DUF3419: Protein of u 63.5 20 0.00042 39.5 6.9 47 594-643 32-78 (380)
289 TIGR03201 dearomat_had 6-hydro 63.0 18 0.00039 37.3 6.2 45 594-640 163-208 (349)
290 COG1867 TRM1 N2,N2-dimethylgua 62.6 18 0.0004 40.2 6.5 70 598-673 53-128 (380)
291 PRK09880 L-idonate 5-dehydroge 62.3 30 0.00065 35.6 7.6 46 594-640 166-212 (343)
292 PLN02662 cinnamyl-alcohol dehy 62.1 38 0.00081 33.9 8.1 76 597-677 3-87 (322)
293 PRK09424 pntA NAD(P) transhydr 61.8 17 0.00037 41.5 6.3 44 595-640 162-206 (509)
294 PRK08945 putative oxoacyl-(acy 61.7 76 0.0016 30.6 9.9 61 596-662 10-71 (247)
295 PRK06181 short chain dehydroge 61.5 77 0.0017 30.8 9.9 73 599-678 2-90 (263)
296 PRK07063 short chain dehydroge 61.4 86 0.0019 30.5 10.2 75 597-676 6-96 (260)
297 PRK05867 short chain dehydroge 61.1 75 0.0016 30.9 9.7 73 597-676 8-96 (253)
298 PRK07523 gluconate 5-dehydroge 60.6 97 0.0021 30.1 10.4 73 597-676 9-97 (255)
299 TIGR02818 adh_III_F_hyde S-(hy 60.3 29 0.00064 36.3 7.3 46 594-640 182-228 (368)
300 cd08237 ribitol-5-phosphate_DH 57.4 25 0.00053 36.4 6.1 45 595-640 161-207 (341)
301 PRK12826 3-ketoacyl-(acyl-carr 57.1 1.1E+02 0.0023 29.1 9.9 74 597-677 5-94 (251)
302 PRK06172 short chain dehydroge 57.0 68 0.0015 31.0 8.7 60 597-663 6-66 (253)
303 PLN02740 Alcohol dehydrogenase 56.8 30 0.00066 36.3 6.8 46 594-640 195-241 (381)
304 PRK07326 short chain dehydroge 56.5 1E+02 0.0022 29.3 9.7 74 597-678 5-94 (237)
305 PRK06124 gluconate 5-dehydroge 56.4 73 0.0016 30.8 8.8 60 597-663 10-70 (256)
306 KOG1562|consensus 55.3 23 0.00049 38.9 5.6 89 594-684 118-214 (337)
307 PRK06914 short chain dehydroge 54.7 1.4E+02 0.003 29.4 10.5 62 598-664 3-65 (280)
308 PF07279 DUF1442: Protein of u 54.1 1.1E+02 0.0024 32.1 10.0 77 596-676 40-125 (218)
309 PRK06138 short chain dehydroge 52.9 1.3E+02 0.0028 28.8 9.8 73 597-677 4-92 (252)
310 PRK12429 3-hydroxybutyrate deh 52.7 1.8E+02 0.0039 27.9 10.7 73 597-676 3-91 (258)
311 PF00653 BIR: Inhibitor of Apo 52.7 8.3 0.00018 32.1 1.5 30 237-266 17-46 (70)
312 KOG2920|consensus 52.6 11 0.00023 40.5 2.6 39 595-635 114-152 (282)
313 KOG1098|consensus 52.4 13 0.00029 44.0 3.5 39 594-632 41-79 (780)
314 PF05148 Methyltransf_8: Hypot 52.3 23 0.00049 37.0 4.8 44 584-632 60-103 (219)
315 TIGR03366 HpnZ_proposed putati 52.3 58 0.0013 32.7 7.6 46 594-640 117-163 (280)
316 PRK05854 short chain dehydroge 52.2 1.6E+02 0.0036 30.3 11.0 62 597-663 13-75 (313)
317 PRK07666 fabG 3-ketoacyl-(acyl 51.9 1.5E+02 0.0032 28.4 10.0 60 597-663 6-66 (239)
318 PLN02896 cinnamyl-alcohol dehy 51.8 69 0.0015 33.1 8.3 74 596-677 8-90 (353)
319 PRK13394 3-hydroxybutyrate deh 51.7 1.2E+02 0.0025 29.3 9.3 60 597-663 6-66 (262)
320 PRK05650 short chain dehydroge 51.1 1.7E+02 0.0036 28.9 10.4 71 600-677 2-88 (270)
321 PRK12939 short chain dehydroge 50.7 2E+02 0.0043 27.4 10.6 73 597-676 6-94 (250)
322 PRK08213 gluconate 5-dehydroge 50.7 1.5E+02 0.0033 28.8 10.0 60 597-663 11-71 (259)
323 cd08281 liver_ADH_like1 Zinc-d 50.6 62 0.0013 33.8 7.8 46 594-640 188-234 (371)
324 PLN02986 cinnamyl-alcohol dehy 50.5 89 0.0019 31.7 8.6 76 597-677 4-88 (322)
325 PRK09291 short chain dehydroge 50.5 1.4E+02 0.003 28.7 9.6 72 598-676 2-83 (257)
326 smart00238 BIR Baculoviral inh 50.0 8.6 0.00019 31.6 1.2 29 238-266 18-46 (71)
327 PRK07677 short chain dehydroge 50.0 95 0.0021 30.1 8.5 59 598-663 1-60 (252)
328 PRK06139 short chain dehydroge 49.7 1.4E+02 0.0031 31.4 10.3 72 597-675 6-93 (330)
329 PF00145 DNA_methylase: C-5 cy 48.7 41 0.00089 33.5 5.9 42 600-643 2-43 (335)
330 TIGR02822 adh_fam_2 zinc-bindi 48.6 65 0.0014 33.3 7.5 45 594-640 162-207 (329)
331 PRK08251 short chain dehydroge 48.5 2E+02 0.0043 27.7 10.3 61 598-663 2-63 (248)
332 PF03721 UDPG_MGDP_dh_N: UDP-g 47.8 12 0.00025 36.8 1.9 77 600-678 2-88 (185)
333 cd08301 alcohol_DH_plants Plan 47.4 71 0.0015 33.2 7.6 46 594-640 184-230 (369)
334 cd08230 glucose_DH Glucose deh 46.9 47 0.001 34.3 6.2 43 595-639 170-216 (355)
335 PRK07890 short chain dehydroge 46.8 1.4E+02 0.0029 28.9 8.9 60 597-663 4-64 (258)
336 PLN02650 dihydroflavonol-4-red 46.7 1.2E+02 0.0025 31.4 8.9 75 598-677 5-88 (351)
337 PRK06223 malate dehydrogenase; 46.6 60 0.0013 33.5 6.9 37 599-636 3-40 (307)
338 PLN02827 Alcohol dehydrogenase 46.3 79 0.0017 33.5 7.8 45 594-639 190-235 (378)
339 PRK06125 short chain dehydroge 46.2 2.4E+02 0.0052 27.5 10.6 73 597-675 6-90 (259)
340 PRK09072 short chain dehydroge 46.2 2.2E+02 0.0049 27.8 10.4 72 597-676 4-90 (263)
341 PF02254 TrkA_N: TrkA-N domain 46.2 24 0.00053 30.5 3.5 47 606-664 4-51 (116)
342 PRK07035 short chain dehydroge 46.1 1.3E+02 0.0028 29.0 8.7 59 597-662 7-66 (252)
343 KOG2671|consensus 46.1 27 0.00058 39.2 4.4 84 580-671 193-289 (421)
344 KOG2352|consensus 45.9 12 0.00026 42.8 1.8 78 595-676 293-380 (482)
345 cd08239 THR_DH_like L-threonin 45.8 71 0.0015 32.4 7.2 45 594-640 160-206 (339)
346 PRK07814 short chain dehydroge 44.9 1.4E+02 0.003 29.4 8.8 60 597-663 9-69 (263)
347 cd08277 liver_alcohol_DH_like 44.9 77 0.0017 33.0 7.4 45 594-639 181-226 (365)
348 PRK05866 short chain dehydroge 44.8 1.3E+02 0.0027 30.8 8.8 60 597-663 39-99 (293)
349 cd08300 alcohol_DH_class_III c 44.6 92 0.002 32.5 7.9 45 594-639 183-228 (368)
350 PRK08339 short chain dehydroge 44.5 1.4E+02 0.0029 29.8 8.8 61 597-663 7-68 (263)
351 PRK07097 gluconate 5-dehydroge 44.5 1.3E+02 0.0029 29.5 8.6 74 597-677 9-98 (265)
352 PRK08703 short chain dehydroge 44.4 1.8E+02 0.004 27.9 9.4 48 597-645 5-53 (239)
353 TIGR03451 mycoS_dep_FDH mycoth 44.2 58 0.0013 33.8 6.4 46 594-640 173-219 (358)
354 KOG2782|consensus 44.0 19 0.00041 38.3 2.9 60 581-643 29-88 (303)
355 PRK12384 sorbitol-6-phosphate 44.0 2.7E+02 0.0059 27.0 10.5 61 598-663 2-63 (259)
356 PRK06113 7-alpha-hydroxysteroi 43.9 1.4E+02 0.0031 29.0 8.6 60 597-663 10-70 (255)
357 PRK15182 Vi polysaccharide bio 43.5 61 0.0013 35.9 6.8 40 598-639 6-45 (425)
358 PRK09242 tropinone reductase; 43.2 1.6E+02 0.0034 28.7 8.8 62 597-663 8-70 (257)
359 PRK05876 short chain dehydroge 43.1 1.4E+02 0.003 30.1 8.6 60 597-663 5-65 (275)
360 PF01234 NNMT_PNMT_TEMT: NNMT/ 43.0 28 0.00061 36.6 3.9 48 595-645 54-102 (256)
361 TIGR01963 PHB_DH 3-hydroxybuty 43.0 1.9E+02 0.0042 27.6 9.2 58 599-663 2-60 (255)
362 PLN02427 UDP-apiose/xylose syn 43.0 76 0.0017 33.3 7.1 74 597-676 13-96 (386)
363 PRK08643 acetoin reductase; Va 42.9 1.5E+02 0.0033 28.7 8.6 59 598-663 2-61 (256)
364 TIGR03206 benzo_BadH 2-hydroxy 42.8 1.6E+02 0.0036 28.1 8.7 60 597-663 2-62 (250)
365 PRK08762 molybdopterin biosynt 42.1 1.8E+02 0.004 31.4 9.9 50 597-647 134-203 (376)
366 PRK07774 short chain dehydroge 41.7 2.4E+02 0.0051 27.1 9.6 72 597-675 5-92 (250)
367 COG1062 AdhC Zn-dependent alco 41.7 69 0.0015 35.8 6.7 46 594-640 182-228 (366)
368 PRK05808 3-hydroxybutyryl-CoA 41.6 49 0.0011 33.7 5.3 42 600-643 5-47 (282)
369 PRK01438 murD UDP-N-acetylmura 41.5 1E+02 0.0023 33.6 8.1 67 597-673 15-85 (480)
370 PRK07062 short chain dehydroge 41.3 1.6E+02 0.0035 28.7 8.6 61 597-662 7-68 (265)
371 KOG2078|consensus 41.2 18 0.00039 41.3 2.3 50 595-647 247-296 (495)
372 cd08261 Zn_ADH7 Alcohol dehydr 41.1 1.1E+02 0.0024 31.0 7.7 45 594-640 156-201 (337)
373 KOG0022|consensus 40.8 61 0.0013 36.1 6.1 46 594-640 189-235 (375)
374 PRK07454 short chain dehydroge 40.6 2E+02 0.0044 27.6 9.0 60 597-663 5-65 (241)
375 PRK15181 Vi polysaccharide bio 40.6 84 0.0018 32.7 6.9 77 597-676 14-100 (348)
376 cd01065 NAD_bind_Shikimate_DH 40.6 1.7E+02 0.0038 26.4 8.2 46 596-643 17-64 (155)
377 cd00401 AdoHcyase S-adenosyl-L 40.4 59 0.0013 36.3 6.1 44 595-640 199-243 (413)
378 KOG3178|consensus 40.3 33 0.00071 37.9 4.0 43 598-643 178-220 (342)
379 PRK06197 short chain dehydroge 40.1 1.9E+02 0.0041 29.3 9.2 62 597-663 15-77 (306)
380 PRK07478 short chain dehydroge 40.1 1.8E+02 0.004 28.1 8.7 60 597-663 5-65 (254)
381 cd08255 2-desacetyl-2-hydroxye 40.0 66 0.0014 31.4 5.7 45 594-640 94-140 (277)
382 TIGR02825 B4_12hDH leukotriene 39.8 1.4E+02 0.0029 30.3 8.1 44 594-639 135-180 (325)
383 PLN02668 indole-3-acetate carb 39.5 34 0.00074 38.0 4.1 21 598-618 64-84 (386)
384 PRK09186 flagellin modificatio 39.1 1.8E+02 0.004 27.9 8.5 62 597-663 3-65 (256)
385 PLN03154 putative allyl alcoho 39.0 1.3E+02 0.0028 31.5 8.0 44 594-639 155-200 (348)
386 KOG2793|consensus 38.8 47 0.001 35.1 4.7 35 598-634 87-121 (248)
387 PRK08226 short chain dehydroge 38.8 2.8E+02 0.0061 27.0 9.8 73 597-677 5-93 (263)
388 PRK05599 hypothetical protein; 38.7 1.6E+02 0.0035 28.9 8.2 46 600-646 2-47 (246)
389 PRK08340 glucose-1-dehydrogena 38.3 2.9E+02 0.0064 27.0 9.9 56 599-662 1-57 (259)
390 PRK08277 D-mannonate oxidoredu 38.0 2E+02 0.0042 28.5 8.7 60 597-663 9-69 (278)
391 PRK05786 fabG 3-ketoacyl-(acyl 37.8 2.1E+02 0.0046 27.2 8.6 59 597-663 4-63 (238)
392 TIGR01202 bchC 2-desacetyl-2-h 37.8 60 0.0013 33.2 5.3 44 596-640 143-187 (308)
393 PRK09496 trkA potassium transp 37.5 2E+02 0.0044 30.8 9.3 71 581-663 214-285 (453)
394 PRK05565 fabG 3-ketoacyl-(acyl 37.4 2.9E+02 0.0064 26.2 9.5 73 598-677 5-94 (247)
395 PRK07576 short chain dehydroge 37.4 2.1E+02 0.0045 28.4 8.8 60 597-663 8-68 (264)
396 PRK08862 short chain dehydroge 37.0 1.8E+02 0.0039 28.6 8.3 50 597-646 4-53 (227)
397 KOG2912|consensus 36.4 33 0.00071 38.3 3.3 55 601-660 106-160 (419)
398 PRK12829 short chain dehydroge 36.2 3.9E+02 0.0084 25.8 10.2 73 596-677 9-97 (264)
399 PRK07109 short chain dehydroge 36.1 2E+02 0.0043 30.2 8.8 60 597-663 7-67 (334)
400 PRK07831 short chain dehydroge 36.1 4.3E+02 0.0092 25.9 10.8 61 597-663 16-79 (262)
401 PRK08267 short chain dehydroge 36.1 3E+02 0.0064 26.9 9.5 71 599-678 2-89 (260)
402 PRK07231 fabG 3-ketoacyl-(acyl 36.0 2.1E+02 0.0046 27.2 8.3 59 597-663 4-63 (251)
403 PRK07904 short chain dehydroge 35.9 1.9E+02 0.0042 28.6 8.3 62 595-662 5-69 (253)
404 cd08294 leukotriene_B4_DH_like 35.5 1.7E+02 0.0037 29.2 7.9 45 594-640 140-186 (329)
405 PRK05855 short chain dehydroge 35.4 2.4E+02 0.0052 30.5 9.5 60 597-663 314-374 (582)
406 PRK07102 short chain dehydroge 35.3 2.3E+02 0.0049 27.3 8.5 59 599-663 2-61 (243)
407 PF04189 Gcd10p: Gcd10p family 35.0 1E+02 0.0022 33.3 6.6 51 579-631 185-235 (299)
408 COG5379 BtaA S-adenosylmethion 34.9 94 0.002 34.6 6.3 49 594-645 60-108 (414)
409 PRK07792 fabG 3-ketoacyl-(acyl 34.8 3.7E+02 0.008 27.6 10.4 74 597-677 11-100 (306)
410 PF00107 ADH_zinc_N: Zinc-bind 34.7 57 0.0012 28.4 4.0 32 607-640 1-32 (130)
411 PRK07791 short chain dehydroge 34.7 3.5E+02 0.0076 27.4 10.1 59 597-662 5-73 (286)
412 TIGR02356 adenyl_thiF thiazole 34.5 2.3E+02 0.0049 28.1 8.5 50 597-647 20-89 (202)
413 PRK08589 short chain dehydroge 34.5 2.1E+02 0.0046 28.4 8.4 58 597-662 5-63 (272)
414 PRK08085 gluconate 5-dehydroge 34.5 2.4E+02 0.0051 27.4 8.5 73 597-676 8-96 (254)
415 PF07942 N2227: N2227-like pro 34.4 1.2E+02 0.0026 32.3 7.0 43 597-642 56-98 (270)
416 PF00106 adh_short: short chai 34.1 3.5E+02 0.0075 24.3 9.6 75 600-681 2-95 (167)
417 PRK15057 UDP-glucose 6-dehydro 34.0 45 0.00097 36.5 3.9 38 601-640 3-40 (388)
418 PTZ00357 methyltransferase; Pr 34.0 1.5E+02 0.0033 36.4 8.2 66 600-665 703-775 (1072)
419 COG3510 CmcI Cephalosporin hyd 33.9 1.1E+02 0.0023 32.4 6.3 74 578-663 52-128 (237)
420 PRK05872 short chain dehydroge 33.4 3.4E+02 0.0073 27.6 9.7 45 597-642 8-53 (296)
421 PLN02214 cinnamoyl-CoA reducta 33.0 2.9E+02 0.0063 28.9 9.4 74 597-677 9-92 (342)
422 PRK12475 thiamine/molybdopteri 32.8 2.7E+02 0.0059 30.1 9.4 75 597-676 23-126 (338)
423 cd00022 BIR Baculoviral inhibi 32.7 25 0.00054 28.8 1.3 29 239-267 17-45 (69)
424 PRK07688 thiamine/molybdopteri 32.6 2.9E+02 0.0063 29.9 9.5 33 597-631 23-57 (339)
425 KOG3924|consensus 32.1 60 0.0013 36.8 4.5 81 580-663 177-261 (419)
426 PRK07201 short chain dehydroge 32.0 2.6E+02 0.0057 31.4 9.5 76 599-681 1-92 (657)
427 PF02086 MethyltransfD12: D12 31.8 88 0.0019 30.8 5.2 56 583-644 8-64 (260)
428 PRK06940 short chain dehydroge 31.7 2.5E+02 0.0055 28.2 8.4 56 599-662 3-58 (275)
429 KOG0821|consensus 31.6 95 0.0021 33.5 5.6 58 597-662 50-107 (326)
430 TIGR02622 CDP_4_6_dhtase CDP-g 30.9 1.5E+02 0.0032 30.7 6.8 37 597-634 3-40 (349)
431 cd08245 CAD Cinnamyl alcohol d 30.8 2.3E+02 0.005 28.5 8.0 44 594-639 159-203 (330)
432 PRK06198 short chain dehydroge 30.6 4.6E+02 0.0099 25.4 9.7 74 597-677 5-95 (260)
433 PRK05875 short chain dehydroge 30.6 3.2E+02 0.007 26.9 8.8 62 597-663 6-68 (276)
434 PRK07806 short chain dehydroge 30.6 3.1E+02 0.0068 26.3 8.6 60 597-663 5-66 (248)
435 PRK06720 hypothetical protein; 30.6 3.3E+02 0.0073 26.3 8.7 49 597-646 15-64 (169)
436 cd08295 double_bond_reductase_ 30.5 2.2E+02 0.0047 29.1 7.9 45 594-640 148-194 (338)
437 PRK12771 putative glutamate sy 29.8 1.5E+02 0.0033 33.4 7.3 35 595-631 134-169 (564)
438 COG3502 Uncharacterized protei 29.7 29 0.00062 33.2 1.4 43 444-488 70-112 (115)
439 PLN02989 cinnamyl-alcohol dehy 29.1 3.6E+02 0.0078 27.4 9.1 76 597-677 4-88 (325)
440 cd08285 NADP_ADH NADP(H)-depen 29.0 1.5E+02 0.0033 30.4 6.5 46 594-640 163-209 (351)
441 PRK12743 oxidoreductase; Provi 28.9 5.6E+02 0.012 25.0 10.2 72 598-676 2-90 (256)
442 PLN00198 anthocyanidin reducta 28.9 2.8E+02 0.0062 28.4 8.4 77 595-677 6-91 (338)
443 PRK10309 galactitol-1-phosphat 28.6 1.5E+02 0.0032 30.5 6.3 45 594-639 157-202 (347)
444 PRK14106 murD UDP-N-acetylmura 28.3 2.6E+02 0.0056 30.2 8.3 69 597-675 4-77 (450)
445 PRK06935 2-deoxy-D-gluconate 3 28.1 3.2E+02 0.0069 26.7 8.3 72 597-676 14-101 (258)
446 cd08278 benzyl_alcohol_DH Benz 27.9 1.6E+02 0.0035 30.8 6.5 46 594-640 183-229 (365)
447 cd05285 sorbitol_DH Sorbitol d 27.7 2.1E+02 0.0046 29.2 7.2 45 594-640 159-205 (343)
448 cd08232 idonate-5-DH L-idonate 27.5 1.4E+02 0.003 30.2 5.9 43 597-640 165-208 (339)
449 cd08241 QOR1 Quinone oxidoredu 27.4 3E+02 0.0065 26.7 7.9 44 594-639 136-181 (323)
450 PRK12823 benD 1,6-dihydroxycyc 27.3 3.3E+02 0.0072 26.4 8.2 59 597-663 7-66 (260)
451 cd08242 MDR_like Medium chain 27.3 2.9E+02 0.0064 27.7 8.0 43 594-640 152-197 (319)
452 PLN02166 dTDP-glucose 4,6-dehy 27.2 1.7E+02 0.0036 32.4 6.9 72 597-676 119-194 (436)
453 TIGR01746 Thioester-redct thio 26.9 2.8E+02 0.0061 27.8 7.8 62 601-663 2-71 (367)
454 cd05278 FDH_like Formaldehyde 26.8 1.8E+02 0.0038 29.4 6.4 46 594-640 164-210 (347)
455 TIGR01763 MalateDH_bact malate 26.8 2E+02 0.0043 30.5 7.0 76 599-678 2-81 (305)
456 PLN02780 ketoreductase/ oxidor 26.7 2.4E+02 0.0053 29.5 7.6 47 597-644 52-99 (320)
457 cd08299 alcohol_DH_class_I_II_ 26.6 2.4E+02 0.0052 29.8 7.6 45 594-639 187-232 (373)
458 PRK08993 2-deoxy-D-gluconate 3 26.5 5.8E+02 0.013 24.9 9.8 58 597-663 9-67 (253)
459 PRK15076 alpha-galactosidase; 26.5 1.8E+02 0.0038 32.6 6.9 75 600-676 3-85 (431)
460 PRK07453 protochlorophyllide o 26.4 3.4E+02 0.0073 27.8 8.4 60 597-663 5-65 (322)
461 cd01339 LDH-like_MDH L-lactate 26.4 1.7E+02 0.0037 30.4 6.4 31 603-635 3-35 (300)
462 cd00757 ThiF_MoeB_HesA_family 26.4 3.6E+02 0.0077 27.1 8.4 76 597-677 20-122 (228)
463 PRK05708 2-dehydropantoate 2-r 26.3 2.1E+02 0.0046 29.9 7.1 36 599-637 3-40 (305)
464 PRK05597 molybdopterin biosynt 26.3 3.6E+02 0.0079 29.2 9.0 50 597-647 27-96 (355)
465 PRK12481 2-deoxy-D-gluconate 3 26.2 3.2E+02 0.007 26.8 8.0 58 597-663 7-65 (251)
466 PRK06035 3-hydroxyacyl-CoA deh 25.9 1.6E+02 0.0035 30.2 6.1 44 599-644 4-48 (291)
467 PLN03209 translocon at the inn 25.9 4.3E+02 0.0094 31.3 10.0 81 594-675 76-168 (576)
468 PRK05653 fabG 3-ketoacyl-(acyl 25.9 4.4E+02 0.0095 24.8 8.5 60 597-663 4-64 (246)
469 TIGR00561 pntA NAD(P) transhyd 25.8 1.4E+02 0.003 34.6 6.1 42 597-640 163-205 (511)
470 PRK08303 short chain dehydroge 25.6 3.2E+02 0.007 28.3 8.2 34 597-631 7-41 (305)
471 cd08238 sorbose_phosphate_red 25.6 1.5E+02 0.0032 31.8 5.9 48 594-641 172-222 (410)
472 TIGR01832 kduD 2-deoxy-D-gluco 25.1 3.9E+02 0.0085 25.6 8.2 58 597-663 4-62 (248)
473 TIGR02415 23BDH acetoin reduct 25.1 4.3E+02 0.0094 25.4 8.5 57 600-663 2-59 (254)
474 TIGR00675 dcm DNA-methyltransf 25.0 1.1E+02 0.0023 32.4 4.7 42 601-644 1-42 (315)
475 PRK07819 3-hydroxybutyryl-CoA 24.8 1.7E+02 0.0038 30.4 6.1 43 600-644 7-50 (286)
476 PLN02586 probable cinnamyl alc 24.8 2E+02 0.0043 30.3 6.6 38 595-634 181-219 (360)
477 PRK07024 short chain dehydroge 24.3 3.4E+02 0.0073 26.6 7.7 58 598-663 2-60 (257)
478 COG0677 WecC UDP-N-acetyl-D-ma 24.3 64 0.0014 36.7 3.0 79 599-679 10-97 (436)
479 cd00498 Hsp33 Heat shock prote 24.3 47 0.001 34.8 1.9 25 235-265 246-271 (275)
480 cd08234 threonine_DH_like L-th 24.3 1.8E+02 0.0039 29.2 5.9 44 594-639 156-201 (334)
481 KOG1331|consensus 24.2 33 0.00072 37.1 0.9 41 595-640 43-83 (293)
482 TIGR03589 PseB UDP-N-acetylglu 24.1 2.1E+02 0.0046 29.7 6.5 71 597-676 3-84 (324)
483 PRK06701 short chain dehydroge 23.5 3.9E+02 0.0085 27.2 8.2 60 597-663 45-106 (290)
484 cd01078 NAD_bind_H4MPT_DH NADP 23.4 3.7E+02 0.0079 25.9 7.6 45 597-642 27-72 (194)
485 TIGR00497 hsdM type I restrict 23.4 2.9E+02 0.0062 31.2 7.8 73 575-647 195-270 (501)
486 PLN02657 3,8-divinyl protochlo 23.3 2.3E+02 0.0049 30.7 6.8 39 595-634 57-96 (390)
487 cd08236 sugar_DH NAD(P)-depend 23.3 2.7E+02 0.0059 28.2 7.0 44 594-638 156-200 (343)
488 KOG3507|consensus 23.2 40 0.00087 29.3 1.0 23 250-272 31-53 (62)
489 cd08293 PTGR2 Prostaglandin re 23.1 3.7E+02 0.008 27.3 7.9 45 594-640 149-198 (345)
490 COG1748 LYS9 Saccharopine dehy 23.0 2.6E+02 0.0057 31.4 7.3 41 599-641 2-44 (389)
491 TIGR00518 alaDH alanine dehydr 22.9 1.8E+02 0.0039 31.7 6.0 42 597-640 166-208 (370)
492 KOG1253|consensus 22.9 44 0.00096 38.7 1.5 74 595-672 107-189 (525)
493 COG1004 Ugd Predicted UDP-gluc 22.8 1.8E+02 0.0039 33.2 6.1 76 600-677 2-87 (414)
494 PTZ00117 malate dehydrogenase; 22.8 2.5E+02 0.0053 29.9 6.9 79 597-678 4-85 (319)
495 COG0569 TrkA K+ transport syst 22.6 4.2E+02 0.009 26.9 8.1 39 599-639 1-40 (225)
496 COG0270 Dcm Site-specific DNA 22.0 1.3E+02 0.0028 32.0 4.6 44 599-644 4-47 (328)
497 PRK13656 trans-2-enoyl-CoA red 22.0 6E+02 0.013 28.9 9.9 37 596-632 39-76 (398)
498 PRK08063 enoyl-(acyl carrier p 21.8 7E+02 0.015 23.9 9.2 60 597-663 3-64 (250)
499 cd05297 GH4_alpha_glucosidase_ 21.8 2.2E+02 0.0048 31.5 6.5 45 600-644 2-51 (423)
500 TIGR02819 fdhA_non_GSH formald 21.6 2.2E+02 0.0048 30.8 6.3 46 594-640 182-228 (393)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6e-26 Score=223.29 Aligned_cols=143 Identities=24% Similarity=0.376 Sum_probs=131.7
Q ss_pred hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEc
Q psy14969 528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVG 605 (687)
Q Consensus 528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIG 605 (687)
.|++++|+..| +.++++++||++|||+.|+|+. ..+|.|.++|++.|++|+.|+|+++|+++| .+++|++|||||
T Consensus 4 ~~l~~~lr~~~-i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L--~~~~g~~VLEIG 80 (209)
T COG2518 4 RMLVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLL--ELKPGDRVLEIG 80 (209)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHh--CCCCCCeEEEEC
Confidence 46679999999 6779999999999999999998 569999999999999999999999999999 799999999999
Q ss_pred CCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-----CCCCccEEEEEecCCCcC
Q psy14969 606 TGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-----PQQDASRVNISVEPQKSG 680 (687)
Q Consensus 606 CGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-----edaPFDLILVVfAP~K~g 680 (687)
|||||.|+.||++++ +|++||+++.+++.|++|++..|+ .++.+++||+ +..|||+|+++++.....
T Consensus 81 tGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~-----~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP 152 (209)
T COG2518 81 TGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGY-----ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP 152 (209)
T ss_pred CCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCC-----CceEEEECCcccCCCCCCCcCEEEEeeccCCCC
Confidence 999999999999987 999999999999999999999998 4589998885 468999999998876654
Q ss_pred c
Q psy14969 681 E 681 (687)
Q Consensus 681 E 681 (687)
+
T Consensus 153 ~ 153 (209)
T COG2518 153 E 153 (209)
T ss_pred H
Confidence 3
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.93 E-value=1.5e-25 Score=218.27 Aligned_cols=142 Identities=27% Similarity=0.390 Sum_probs=120.2
Q ss_pred hchhcCCCCCCHHHHHHHHhCCCccCCCCCC--CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCcc
Q psy14969 532 LCVSEFDMYKTKELRDLMIKVDRKDFCPPNR--NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSG 609 (687)
Q Consensus 532 QqLRsnG~IdS~EV~qAMraVPReaFVP~gy--qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTG 609 (687)
++++..|.+.+++|++||++|||+.|+|..+ .+|.|.+++++.+++++.|.++++++++| .+++|++|||||||||
T Consensus 7 ~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L--~l~pg~~VLeIGtGsG 84 (209)
T PF01135_consen 7 DNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEAL--DLKPGDRVLEIGTGSG 84 (209)
T ss_dssp HHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHT--TC-TT-EEEEES-TTS
T ss_pred HHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHH--hcCCCCEEEEecCCCc
Confidence 6777888799999999999999999999974 69999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEecCCCcC
Q psy14969 610 YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVEPQKSG 680 (687)
Q Consensus 610 YLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfAP~K~g 680 (687)
|+|+.||+++++.++|++||+++.+++.|+++++..+. .++.++.||+. ..|||+|++.++..+..
T Consensus 85 Y~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-----~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip 155 (209)
T PF01135_consen 85 YQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-----DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP 155 (209)
T ss_dssp HHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-----HSEEEEES-GGGTTGGG-SEEEEEESSBBSS--
T ss_pred HHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-----CceeEEEcchhhccccCCCcCEEEEeeccchHH
Confidence 99999999998889999999999999999999999987 47899998853 58999999988766543
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.90 E-value=6.7e-23 Score=196.83 Aligned_cols=142 Identities=25% Similarity=0.337 Sum_probs=126.4
Q ss_pred HhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEE
Q psy14969 527 GMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDV 604 (687)
Q Consensus 527 NlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDI 604 (687)
..||+++++..+ ++|++|++||+.|||+.|+|.. ..+|.|.+++++.|++++.|.+++++++.+ .+.++.+||||
T Consensus 7 ~~~v~~l~~~~~-v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l--~~~~g~~VLdI 83 (212)
T PRK13942 7 RRVIEELIREGY-IKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELL--DLKEGMKVLEI 83 (212)
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHc--CCCCcCEEEEE
Confidence 356766666655 9999999999999999999997 469999999999999999999999999998 78899999999
Q ss_pred cCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEecC
Q psy14969 605 GTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVEP 676 (687)
Q Consensus 605 GCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfAP 676 (687)
||||||+|+.+++.+++.++|+++|+++++++.|+++++..++ .++.++.+|+. ..+||+|++.++-
T Consensus 84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-----~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-----DNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 9999999999999987678999999999999999999999886 57899999863 4689999887653
No 4
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.88 E-value=1.1e-21 Score=186.83 Aligned_cols=142 Identities=25% Similarity=0.407 Sum_probs=124.0
Q ss_pred hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCC--CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEc
Q psy14969 528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNR--NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVG 605 (687)
Q Consensus 528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gy--qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIG 605 (687)
.||+ +++..+.+.+++|++||++|||+.|+|+.+ .+|.|.+++++.+++++.|.+++.+++.+ .+.++.+|||||
T Consensus 4 ~lv~-~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l--~~~~~~~VLDiG 80 (205)
T PRK13944 4 RLVE-ELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELI--EPRPGMKILEVG 80 (205)
T ss_pred HHHH-HHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhc--CCCCCCEEEEEC
Confidence 3554 566666689999999999999999999884 59999999999999999999999999988 678899999999
Q ss_pred CCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEecC
Q psy14969 606 TGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVEP 676 (687)
Q Consensus 606 CGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfAP 676 (687)
||+||+++.+++++++.++|+|+|+++.+++.|++++...++ ..++.++.+|+. ..+||.|++..+.
T Consensus 81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 999999999999986678999999999999999999999886 456888888754 3579999887653
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.87 E-value=2e-21 Score=185.36 Aligned_cols=143 Identities=27% Similarity=0.383 Sum_probs=124.7
Q ss_pred hHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEc
Q psy14969 528 MLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVG 605 (687)
Q Consensus 528 lMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIG 605 (687)
.|| ++++..+.+.+++|.+||+.|||+.|+|.. ..+|.+.+++++.+++++.|.+++.+++++ .+.++.+|||||
T Consensus 9 ~~v-~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l--~~~~~~~VLDiG 85 (215)
T TIGR00080 9 ALI-DKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELL--ELKPGMKVLEIG 85 (215)
T ss_pred HHH-HHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHh--CCCCcCEEEEEC
Confidence 344 455555568999999999999999999987 469999999999999999999999999998 688999999999
Q ss_pred CCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEecCCC
Q psy14969 606 TGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVEPQK 678 (687)
Q Consensus 606 CGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfAP~K 678 (687)
||+||+++.|++.+++.++|+|+|+++.+++.|+++++..++ .++.++.+|+. ..+||+|++..++..
T Consensus 86 ~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~ 158 (215)
T TIGR00080 86 TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-----DNVIVIVGDGTQGWEPLAPYDRIYVTAAGPK 158 (215)
T ss_pred CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCeEEEECCcccCCcccCCCCEEEEcCCccc
Confidence 999999999999987668899999999999999999999886 46888888864 357999988765544
No 6
>KOG1661|consensus
Probab=99.86 E-value=1.3e-21 Score=194.42 Aligned_cols=161 Identities=27% Similarity=0.423 Sum_probs=145.1
Q ss_pred cCccCCC-chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHH
Q psy14969 514 MKNTAVQ-PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEP 590 (687)
Q Consensus 514 Mswrcsg-AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLEl 590 (687)
|+|+..+ .|++|+ ++|+.+++|++..+.+||++++|..|.|.. +.+|.|.|..+|.+.++++|+|++.++++
T Consensus 1 m~~~s~gs~n~~LI-----d~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~ 75 (237)
T KOG1661|consen 1 MGWVSSGSDNDDLI-----DNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEY 75 (237)
T ss_pred CCccccCcchHHHH-----HHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHH
Confidence 8899888 899999 999999999999999999999999999987 56999999999999999999999999999
Q ss_pred hhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEE-EEEeCCHHHHHHHHHHHHHcC-----CCccCCCcEEEEEcC---
Q psy14969 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKV-YSLDHMEYLVNFSKENIRKNH-----AHLLDEGVVNIMRTL--- 661 (687)
Q Consensus 591 LkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrV-tGIDISpeAVE~ARKNLKkaG-----~~VaSsgRI~LI~GD--- 661 (687)
|.++++||.+.||||+||||+|+++++++++.|.+ +|||+.+++|+++++++.+.- ..-+..+++.++.||
T Consensus 76 L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~ 155 (237)
T KOG1661|consen 76 LDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK 155 (237)
T ss_pred HHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc
Confidence 97779999999999999999999999998776664 999999999999999999876 334457889999888
Q ss_pred --CCCCCccEEEEEecCCCc
Q psy14969 662 --PPQQDASRVNISVEPQKS 679 (687)
Q Consensus 662 --AedaPFDLILVVfAP~K~ 679 (687)
++..|||+|.+.++-.+.
T Consensus 156 g~~e~a~YDaIhvGAaa~~~ 175 (237)
T KOG1661|consen 156 GYAEQAPYDAIHVGAAASEL 175 (237)
T ss_pred cCCccCCcceEEEccCcccc
Confidence 457999999998776554
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.82 E-value=4.2e-19 Score=168.09 Aligned_cols=140 Identities=24% Similarity=0.340 Sum_probs=123.1
Q ss_pred HHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCC--CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeE
Q psy14969 524 ALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTV 601 (687)
Q Consensus 524 gLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~g--yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RV 601 (687)
+..+.||+ +|+..+ +.++.+.+||+.+||+.|+|.. ..+|.|.+++++.|++++.|.+.+++++.+ .+.++.+|
T Consensus 7 ~~~~~~v~-~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l--~~~~~~~V 82 (212)
T PRK00312 7 ERFARLVL-RLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELL--ELKPGDRV 82 (212)
T ss_pred HHHHHHHH-HHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhc--CCCCCCEE
Confidence 34556775 999999 8999999999999999999976 469999999999999999999999999988 68889999
Q ss_pred EEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEec
Q psy14969 602 LDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVE 675 (687)
Q Consensus 602 LDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfA 675 (687)
||||||+||.+..++++.+ +|+++|+++.+++.|++++++.++ .++.++.++.. ..+||+|++..+
T Consensus 83 LeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 83 LEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGL-----HNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred EEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCC-----CceEEEECCcccCCCcCCCcCEEEEccC
Confidence 9999999999999998864 899999999999999999999876 35888888753 257999988754
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.76 E-value=7.5e-18 Score=173.91 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=116.9
Q ss_pred hchhcCCCCCCHHHHHHHHhCCCccCCCCCC---CCCCCCCccc-cCC---cccCcHHHHHHHHHHhhhcCCCCCeEEEE
Q psy14969 532 LCVSEFDMYKTKELRDLMIKVDRKDFCPPNR---NPYHDYSVML-ENC---SYLNSPSFIASSLEPALLKLKPGDTVLDV 604 (687)
Q Consensus 532 QqLRsnG~IdS~EV~qAMraVPReaFVP~gy---qAYsD~pLPI-G~G---qTISaP~VvAlLLElLkedLkpG~RVLDI 604 (687)
..++..| +++ +|++||++|||+.|+|..+ .+|.|.++++ ..| ++++.|.+.+.+++.+ .++++.+||||
T Consensus 12 ~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L--~i~~g~~VLDI 87 (322)
T PRK13943 12 WILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWV--GLDKGMRVLEI 87 (322)
T ss_pred HHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhc--CCCCCCEEEEE
Confidence 6899999 677 9999999999999999874 3789999886 555 5888999999999987 68889999999
Q ss_pred cCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEEEec
Q psy14969 605 GTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNISVE 675 (687)
Q Consensus 605 GCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILVVfA 675 (687)
|||+|++++.+++..++.+.|+|+|+++++++.|+++++..++ .++.++.+|+. ..+||+|++.++
T Consensus 88 G~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-----~nV~~i~gD~~~~~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 88 GGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-----ENVIFVCGDGYYGVPEFAPYDVIFVTVG 158 (322)
T ss_pred eCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCChhhcccccCCccEEEECCc
Confidence 9999999999999886557899999999999999999999886 46888888853 357999987644
No 9
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.73 E-value=9.8e-19 Score=172.57 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=114.1
Q ss_pred ccccccchhhhcccccccchhhcccCccCCC------chHHHHHhHHhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCC
Q psy14969 490 SNQHCDFTLRNTISFSSHFIFSRKMKNTAVQ------PLLALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRN 563 (687)
Q Consensus 490 m~~~CPlc~~~L~s~sk~LLLSr~Mswrcsg------AnegLVNlMVvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyq 563 (687)
|.+.||+|+.+|...+ .+|+|.+ ++++|+|+|+++..++..+.++++|++| |+.|+..++
T Consensus 1 ~~~~CP~C~~~l~~~~--------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~a-----r~~fl~~g~- 66 (272)
T PRK11088 1 MSYQCPLCHQPLTLEE--------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQA-----RRAFLDAGH- 66 (272)
T ss_pred CcccCCCCCcchhcCC--------CEEEcCCCCCCccccCceEEeccccccCCCCCCcCHHHHHH-----HHHHHHCCC-
Confidence 4589999999997655 6799998 7899999999988888888899999999 888886542
Q ss_pred CCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHH
Q psy14969 564 PYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPH--GKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 564 AYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~--GrVtGIDISpeAVE~ARKN 641 (687)
|... ...+...+.+.+ ..++.+|||||||+|+++..+++.++.. ..|+|+|+++.|++.|+++
T Consensus 67 -y~~l-----------~~~i~~~l~~~l---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~ 131 (272)
T PRK11088 67 -YQPL-----------RDAVANLLAERL---DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR 131 (272)
T ss_pred -hHHH-----------HHHHHHHHHHhc---CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence 2210 111223333332 3355789999999999999999876422 3799999999999999876
Q ss_pred HHHcCCCccCCCcEEEEEcCCCC-----CCccEEEEEecCCCcCcc
Q psy14969 642 IRKNHAHLLDEGVVNIMRTLPPQ-----QDASRVNISVEPQKSGEI 682 (687)
Q Consensus 642 LKkaG~~VaSsgRI~LI~GDAed-----aPFDLILVVfAP~K~gEl 682 (687)
.. ++.+..+++.. ..||+|+..++|....|+
T Consensus 132 ~~----------~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~~e~ 167 (272)
T PRK11088 132 YP----------QVTFCVASSHRLPFADQSLDAIIRIYAPCKAEEL 167 (272)
T ss_pred CC----------CCeEEEeecccCCCcCCceeEEEEecCCCCHHHH
Confidence 42 24455555433 359999998888776654
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.22 E-value=9.9e-11 Score=98.65 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC---C--CCCccEEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP---P--QQDASRVN 671 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA---e--daPFDLIL 671 (687)
|+.+|||||||+|.++..+++.. +.++|+|+|+++.+++.|++++...+. ..++.++.++. . ..+||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDAEFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCCHGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECccccCcccCCCCCEEE
Confidence 57899999999999999999965 478999999999999999999977666 68999999998 2 24689887
Q ss_pred EEe
Q psy14969 672 ISV 674 (687)
Q Consensus 672 VVf 674 (687)
...
T Consensus 76 ~~~ 78 (112)
T PF12847_consen 76 CSG 78 (112)
T ss_dssp ECS
T ss_pred ECC
Confidence 765
No 11
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.08 E-value=9.6e-10 Score=107.96 Aligned_cols=93 Identities=17% Similarity=0.317 Sum_probs=83.0
Q ss_pred CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969 575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654 (687)
Q Consensus 575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR 654 (687)
|.-++.+++.+..+..| .+.+|++++|||||||.++..++ +++|.++|||||.++++++..++|.++.++ .+
T Consensus 14 ~~p~TK~EIRal~ls~L--~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-----~n 85 (187)
T COG2242 14 GGPMTKEEIRALTLSKL--RPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV-----DN 85 (187)
T ss_pred CCCCcHHHHHHHHHHhh--CCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCC-----Cc
Confidence 44478889999999988 79999999999999999999999 556899999999999999999999999997 78
Q ss_pred EEEEEcCCCC----C-CccEEEEEec
Q psy14969 655 VNIMRTLPPQ----Q-DASRVNISVE 675 (687)
Q Consensus 655 I~LI~GDAed----a-PFDLILVVfA 675 (687)
+.++.|++++ . .+|.|++...
T Consensus 86 ~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 86 LEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred EEEEeccchHhhcCCCCCCEEEECCC
Confidence 9999999875 3 4999988654
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.07 E-value=4.7e-10 Score=111.25 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=61.8
Q ss_pred HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC
Q psy14969 586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ 665 (687)
Q Consensus 586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda 665 (687)
.+++.+ .+.+|.+|||||||||.++..+++.+++.++|+|+|+++.|++.|+++++..+. .+++++++|++.+
T Consensus 38 ~~~~~~--~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-----~~i~~v~~da~~l 110 (233)
T PF01209_consen 38 KLIKLL--GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-----QNIEFVQGDAEDL 110 (233)
T ss_dssp HHHHHH--T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB-
T ss_pred HHHhcc--CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----CCeeEEEcCHHHh
Confidence 444444 567899999999999999999999988889999999999999999999999886 4899999998765
Q ss_pred C-----ccEEEEEecCCC
Q psy14969 666 D-----ASRVNISVEPQK 678 (687)
Q Consensus 666 P-----FDLILVVfAP~K 678 (687)
| ||.|++.+.--.
T Consensus 111 p~~d~sfD~v~~~fglrn 128 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRN 128 (233)
T ss_dssp -S-TT-EEEEEEES-GGG
T ss_pred cCCCCceeEEEHHhhHHh
Confidence 4 788988876443
No 13
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.07 E-value=4.3e-10 Score=113.78 Aligned_cols=129 Identities=15% Similarity=0.163 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHhCCCcc--CCCCCC----CCCCCCCccccCCcccCcHHHHHHHHHHhhhc--CCCCCeEEEEcCCccHH
Q psy14969 540 YKTKELRDLMIKVDRKD--FCPPNR----NPYHDYSVMLENCSYLNSPSFIASSLEPALLK--LKPGDTVLDVGTGSGYT 611 (687)
Q Consensus 540 IdS~EV~qAMraVPRea--FVP~gy----qAYsD~pLPIG~GqTISaP~VvAlLLElLked--LkpG~RVLDIGCGTGYL 611 (687)
+++.+..+....+.|+. ..|-.| ..+....+.++.+..+++|.+...+...+... ..++.+|||+|||+|.+
T Consensus 56 ~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i 135 (284)
T TIGR03533 56 LTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCI 135 (284)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHH
Confidence 44555545544555663 456653 56667788889999999887766665554211 23467999999999999
Q ss_pred HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEEEE
Q psy14969 612 AACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVNIS 673 (687)
Q Consensus 612 TAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLILVV 673 (687)
+..+++.. +.++|+|+|+++.+++.|++|++.+++ ..++.++.+|.. ...||+|+.+
T Consensus 136 ~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 136 AIACAYAF-PEAEVDAVDISPDALAVAEINIERHGL----EDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred HHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhccCCCCccEEEEC
Confidence 99999886 577999999999999999999999887 567899998863 2258877554
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.06 E-value=1e-09 Score=99.07 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC------CccE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ------DASR 669 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda------PFDL 669 (687)
+.+.+|||+|||+|+++..|++...+.++|+|+|+++.|++.|+++++..++ .++.++.+|...+ .||+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-----~ni~~~~~d~~~l~~~~~~~~D~ 76 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-----DNIEFIQGDIEDLPQELEEKFDI 76 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-----TTEEEEESBTTCGCGCSSTTEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-----cccceEEeehhccccccCCCeeE
Confidence 4678999999999999999996655688999999999999999999999987 3899999997754 4787
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
|+..
T Consensus 77 I~~~ 80 (152)
T PF13847_consen 77 IISN 80 (152)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7665
No 15
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=9.1e-10 Score=110.94 Aligned_cols=81 Identities=30% Similarity=0.404 Sum_probs=71.0
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----cc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----AS 668 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FD 668 (687)
.+.+|.+|||||||||-.|..+++.++ .|+|+|+|+++.|++.|+++....++ .+ +.|++|||+.+| ||
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~----~~-i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV----QN-VEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc----cc-eEEEEechhhCCCCCCccC
Confidence 455899999999999999999999997 88999999999999999999999887 34 999999998777 78
Q ss_pred EEEEEecCCCcC
Q psy14969 669 RVNISVEPQKSG 680 (687)
Q Consensus 669 LILVVfAP~K~g 680 (687)
++++.+.--...
T Consensus 122 ~vt~~fglrnv~ 133 (238)
T COG2226 122 AVTISFGLRNVT 133 (238)
T ss_pred EEEeeehhhcCC
Confidence 888887654443
No 16
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.04 E-value=3.2e-09 Score=89.96 Aligned_cols=88 Identities=25% Similarity=0.416 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969 580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR 659 (687)
Q Consensus 580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~ 659 (687)
...+.+.+++.+ .+.++.+|||+|||+|+.+..+++..+ .++|+++|+++.+++.|+++++..+. .++.++.
T Consensus 4 ~~~~~~~~~~~~--~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~ 75 (124)
T TIGR02469 4 KREVRALTLSKL--RLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV-----SNIVIVE 75 (124)
T ss_pred hHHHHHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEe
Confidence 445677777776 567788999999999999999998874 57999999999999999999998875 3677877
Q ss_pred cCCCC------CCccEEEEEec
Q psy14969 660 TLPPQ------QDASRVNISVE 675 (687)
Q Consensus 660 GDAed------aPFDLILVVfA 675 (687)
+++.. ..||.|+....
T Consensus 76 ~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 76 GDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred ccccccChhhcCCCCEEEECCc
Confidence 77542 35898877543
No 17
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.03 E-value=2.7e-09 Score=106.63 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE-
Q psy14969 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR- 659 (687)
Q Consensus 581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~- 659 (687)
|....++..++ ...++++||||||+.||.|++||..++.+|+++++|+++++++.|++++++.|+ .+++.++.
T Consensus 45 ~e~g~~L~~L~--~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~----~~~i~~~~~ 118 (219)
T COG4122 45 PETGALLRLLA--RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV----DDRIELLLG 118 (219)
T ss_pred hhHHHHHHHHH--HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC----cceEEEEec
Confidence 55666665555 567889999999999999999999996689999999999999999999999998 77899998
Q ss_pred cCC-------CCCCccEEEEEecCCCcCc
Q psy14969 660 TLP-------PQQDASRVNISVEPQKSGE 681 (687)
Q Consensus 660 GDA-------edaPFDLILVVfAP~K~gE 681 (687)
|++ ...+||+|++.+++.+..+
T Consensus 119 gdal~~l~~~~~~~fDliFIDadK~~yp~ 147 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFIDADKADYPE 147 (219)
T ss_pred CcHHHHHHhccCCCccEEEEeCChhhCHH
Confidence 464 2478999999999877654
No 18
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.02 E-value=2.7e-09 Score=101.30 Aligned_cols=92 Identities=25% Similarity=0.419 Sum_probs=76.0
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969 577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN 656 (687)
Q Consensus 577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~ 656 (687)
.++.+.+.+..+..+ .+.++.+|||+|||+|+++..+++..++.++|+++|+++.+++.|+++++..++ .+++.
T Consensus 22 ~~t~~~~r~~~l~~l--~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~ 95 (198)
T PRK00377 22 PMTKEEIRALALSKL--RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIV 95 (198)
T ss_pred CCCHHHHHHHHHHHc--CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeE
Confidence 356667777777666 788999999999999999999998876678999999999999999999999885 46788
Q ss_pred EEEcCCCC------CCccEEEEEe
Q psy14969 657 IMRTLPPQ------QDASRVNISV 674 (687)
Q Consensus 657 LI~GDAed------aPFDLILVVf 674 (687)
++.+++.+ ..||.|++..
T Consensus 96 ~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 96 LIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred EEEechhhhHhhcCCCCCEEEECC
Confidence 88888743 3589887743
No 19
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.02 E-value=1.6e-09 Score=106.97 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=69.8
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---------
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------- 664 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------- 664 (687)
...++.+|||||||+||.+..|+..+++.++|+++|+++++++.|+++++++++ .+++.++.|++.+
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~~L~~l~~~~ 140 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALSALDQLLNND 140 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHHhCC
Confidence 455788999999999999999999887789999999999999999999999998 6789999998742
Q ss_pred --CCccEEEEEecC
Q psy14969 665 --QDASRVNISVEP 676 (687)
Q Consensus 665 --aPFDLILVVfAP 676 (687)
.+||+|++.++.
T Consensus 141 ~~~~fD~VfiDa~k 154 (234)
T PLN02781 141 PKPEFDFAFVDADK 154 (234)
T ss_pred CCCCCCEEEECCCH
Confidence 479999987653
No 20
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.01 E-value=3.6e-09 Score=98.97 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=73.8
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969 577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN 656 (687)
Q Consensus 577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~ 656 (687)
.++.+.+.+.+++.+ .+.++.+|||||||+|+++..+++.. ++++|+++|+++.+++.|+++++..+. .++.
T Consensus 13 ~~~~~~~r~~~~~~l--~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~ 84 (187)
T PRK08287 13 PMTKEEVRALALSKL--ELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-----GNID 84 (187)
T ss_pred CCchHHHHHHHHHhc--CCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeE
Confidence 356667777777777 67788999999999999999999886 578999999999999999999998875 3588
Q ss_pred EEEcCCC---CCCccEEEEEe
Q psy14969 657 IMRTLPP---QQDASRVNISV 674 (687)
Q Consensus 657 LI~GDAe---daPFDLILVVf 674 (687)
++.++.. ...||+|++..
T Consensus 85 ~~~~d~~~~~~~~~D~v~~~~ 105 (187)
T PRK08287 85 IIPGEAPIELPGKADAIFIGG 105 (187)
T ss_pred EEecCchhhcCcCCCEEEECC
Confidence 8887754 23589887654
No 21
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.98 E-value=1.4e-09 Score=111.65 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHhCCCcc--CCCCCC----CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCC--CCCeEEEEcCCccHH
Q psy14969 540 YKTKELRDLMIKVDRKD--FCPPNR----NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLK--PGDTVLDVGTGSGYT 611 (687)
Q Consensus 540 IdS~EV~qAMraVPRea--FVP~gy----qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLk--pG~RVLDIGCGTGYL 611 (687)
+.+.+..+....+.|+. ..|-+| ..+....+.++.+..+++|.+...+...+...+. ++.+|||+|||+|++
T Consensus 68 l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~i 147 (307)
T PRK11805 68 LTPSEKARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCI 147 (307)
T ss_pred CCHHHHHHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHH
Confidence 44444444444555663 566653 4666778888899999888776666554421122 236899999999999
Q ss_pred HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEEE
Q psy14969 612 AACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNIS 673 (687)
Q Consensus 612 TAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILVV 673 (687)
+..+++.. |..+|+|+|+++.+++.|++|++..++ ..++.++.+|... ..||+|+..
T Consensus 148 ai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~~l~~~~fDlIvsN 208 (307)
T PRK11805 148 AIACAYAF-PDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFAALPGRRYDLIVSN 208 (307)
T ss_pred HHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhhhCCCCCccEEEEC
Confidence 99999886 578999999999999999999999886 5678999988532 358877553
No 22
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.97 E-value=4e-09 Score=106.60 Aligned_cols=97 Identities=25% Similarity=0.359 Sum_probs=75.7
Q ss_pred ccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccC
Q psy14969 572 LENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLD 651 (687)
Q Consensus 572 IG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaS 651 (687)
+.++..|..|.-.+.++..+ ++.||.+|||.|+|||.+|+.|++.++|.|+|++.|+.++.++.|+++++.+++
T Consensus 17 l~rrtQIiYpkD~~~I~~~l--~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl---- 90 (247)
T PF08704_consen 17 LPRRTQIIYPKDISYILMRL--DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL---- 90 (247)
T ss_dssp S-SSS----HHHHHHHHHHT--T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----
T ss_pred ccCCcceeeCchHHHHHHHc--CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----
Confidence 34455678888999999888 899999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEEcCCCC--------CCccEEEEEe
Q psy14969 652 EGVVNIMRTLPPQ--------QDASRVNISV 674 (687)
Q Consensus 652 sgRI~LI~GDAed--------aPFDLILVVf 674 (687)
.+.+.+.++|... ..+|.|++..
T Consensus 91 ~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDl 121 (247)
T PF08704_consen 91 DDNVTVHHRDVCEEGFDEELESDFDAVFLDL 121 (247)
T ss_dssp CTTEEEEES-GGCG--STT-TTSEEEEEEES
T ss_pred CCCceeEecceecccccccccCcccEEEEeC
Confidence 6789999988632 2478887763
No 23
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.97 E-value=1.3e-09 Score=106.75 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----------
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----------- 663 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----------- 663 (687)
...+.+|||||||+||.|.+||+.++++|+|+++|++++.++.|+++++++|+ .++++++.|++.
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~~~l~~l~~~~~ 118 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDALEVLPELANDGE 118 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HHHHHHHHHHTTT
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccHhhHHHHHhccC
Confidence 44778999999999999999999987789999999999999999999999998 789999999974
Q ss_pred CCCccEEEEEecCCC
Q psy14969 664 QQDASRVNISVEPQK 678 (687)
Q Consensus 664 daPFDLILVVfAP~K 678 (687)
..+||.|++.++...
T Consensus 119 ~~~fD~VFiDa~K~~ 133 (205)
T PF01596_consen 119 EGQFDFVFIDADKRN 133 (205)
T ss_dssp TTSEEEEEEESTGGG
T ss_pred CCceeEEEEcccccc
Confidence 247999999987543
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.96 E-value=6.4e-09 Score=99.18 Aligned_cols=83 Identities=19% Similarity=0.332 Sum_probs=67.9
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
..++..+ .+.++.+|||||||+|..+..+++..++.++|+|+|+++.+++.|+++++..+. .++.++.+++..
T Consensus 35 ~~~l~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~ 107 (231)
T TIGR02752 35 KDTMKRM--NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNVELVHGNAME 107 (231)
T ss_pred HHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEechhc
Confidence 4455555 577889999999999999999999887778999999999999999999987765 468888887643
Q ss_pred -----CCccEEEEEe
Q psy14969 665 -----QDASRVNISV 674 (687)
Q Consensus 665 -----aPFDLILVVf 674 (687)
..||.|++.+
T Consensus 108 ~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 108 LPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCCCccEEEEec
Confidence 4588887654
No 25
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.95 E-value=6.5e-09 Score=98.18 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=68.5
Q ss_pred CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969 575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654 (687)
Q Consensus 575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR 654 (687)
|..++.+.+.+.++..+ .+.++.+|||+|||+|+++..+++.. +.++|+++|+++.+++.|+++++..++ .+
T Consensus 20 ~~p~t~~~v~~~l~~~l--~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~-----~~ 91 (196)
T PRK07402 20 GIPLTKREVRLLLISQL--RLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV-----KN 91 (196)
T ss_pred CCCCCHHHHHHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-----CC
Confidence 44466777887788777 67788999999999999999998775 568999999999999999999998875 46
Q ss_pred EEEEEcCCC
Q psy14969 655 VNIMRTLPP 663 (687)
Q Consensus 655 I~LI~GDAe 663 (687)
+.++.+++.
T Consensus 92 v~~~~~d~~ 100 (196)
T PRK07402 92 VEVIEGSAP 100 (196)
T ss_pred eEEEECchH
Confidence 888888864
No 26
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.94 E-value=5.4e-09 Score=102.76 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=67.6
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL 661 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD 661 (687)
++..+...+...+.++.+|||||||+|..+..+++.+ .|.++|+|+|+++.|++.|++++...+. ..++.++.++
T Consensus 42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d 117 (247)
T PRK15451 42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGD 117 (247)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCC
Confidence 4444433332235688999999999999999988754 3678999999999999999999998776 4579999999
Q ss_pred CCCCC---ccEEEEE
Q psy14969 662 PPQQD---ASRVNIS 673 (687)
Q Consensus 662 AedaP---FDLILVV 673 (687)
....+ +|.|+..
T Consensus 118 ~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 118 IRDIAIENASMVVLN 132 (247)
T ss_pred hhhCCCCCCCEEehh
Confidence 76543 7776654
No 27
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.94 E-value=3.1e-09 Score=114.77 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHhCCCc-cCCCCC----CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHH
Q psy14969 540 YKTKELRDLMIKVDRK-DFCPPN----RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAAC 614 (687)
Q Consensus 540 IdS~EV~qAMraVPRe-aFVP~g----yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAa 614 (687)
+.+.+.......+.|+ ...|-+ .+.|.+..+.++.+..+++|.+...+...+ ..+.++.+|||||||||.++..
T Consensus 190 l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL-~~l~~~~rVLDLGcGSG~Iaia 268 (423)
T PRK14966 190 MPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVL-ARLPENGRVWDLGTGSGAVAVT 268 (423)
T ss_pred CCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhh-hccCCCCEEEEEeChhhHHHHH
Confidence 3444433333334333 344555 357788888999999999997766655444 2355677999999999999999
Q ss_pred HHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccEEEE
Q psy14969 615 LGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASRVNI 672 (687)
Q Consensus 615 LArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDLILV 672 (687)
+++.. +.++|+|+|+|+.|++.|++|++..+. ++.++.+|.. ..+||+|+.
T Consensus 269 LA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~fi~gDl~e~~l~~~~~FDLIVS 325 (423)
T PRK14966 269 VALER-PDAFVRASDISPPALETARKNAADLGA------RVEFAHGSWFDTDMPSEGKWDIIVS 325 (423)
T ss_pred HHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------cEEEEEcchhccccccCCCccEEEE
Confidence 99875 467999999999999999999998764 7888888853 235787654
No 28
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.93 E-value=5.1e-09 Score=108.13 Aligned_cols=86 Identities=27% Similarity=0.240 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE-Ec
Q psy14969 582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM-RT 660 (687)
Q Consensus 582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI-~G 660 (687)
.+..++++++.....+|++|||||||||.++++.+++.. .+|+|+|++|.+++.|++|++.+++ ..++.+. ..
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~----~~~~~v~~~~ 219 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGV----EDRIEVSLSE 219 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-----TTCEEESCTS
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCC----CeeEEEEEec
Confidence 456667777766678899999999999999999888753 5899999999999999999999998 5566553 23
Q ss_pred CCCCCCccEEEEE
Q psy14969 661 LPPQQDASRVNIS 673 (687)
Q Consensus 661 DAedaPFDLILVV 673 (687)
+....+||+|+.+
T Consensus 220 ~~~~~~~dlvvAN 232 (295)
T PF06325_consen 220 DLVEGKFDLVVAN 232 (295)
T ss_dssp CTCCS-EEEEEEE
T ss_pred ccccccCCEEEEC
Confidence 4445789988765
No 29
>PLN02476 O-methyltransferase
Probab=98.93 E-value=2.3e-09 Score=110.08 Aligned_cols=93 Identities=12% Similarity=0.159 Sum_probs=77.5
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI 657 (687)
Q Consensus 578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L 657 (687)
+..|....++..++ ...++++|||||||+||.|+.+|..++++|+|+++|.+++.++.|+++++++|+ .+++.+
T Consensus 101 ~v~~~~g~lL~~L~--~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~l 174 (278)
T PLN02476 101 QVSPDQAQLLAMLV--QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNV 174 (278)
T ss_pred ccCHHHHHHHHHHH--HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEE
Confidence 34555555444444 566789999999999999999999887789999999999999999999999998 679999
Q ss_pred EEcCCCC-----------CCccEEEEEecC
Q psy14969 658 MRTLPPQ-----------QDASRVNISVEP 676 (687)
Q Consensus 658 I~GDAed-----------aPFDLILVVfAP 676 (687)
+.|++.+ .+||.|++.++.
T Consensus 175 i~GdA~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 175 KHGLAAESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred EEcCHHHHHHHHHhcccCCCCCEEEECCCH
Confidence 9999732 479999998764
No 30
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.92 E-value=2.7e-09 Score=116.26 Aligned_cols=128 Identities=15% Similarity=0.111 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHhCCCc-cCCCCC----CCCCCCCCccccCCcccCcHHHHHHHHHHhhh-c-------------------
Q psy14969 540 YKTKELRDLMIKVDRK-DFCPPN----RNPYHDYSVMLENCSYLNSPSFIASSLEPALL-K------------------- 594 (687)
Q Consensus 540 IdS~EV~qAMraVPRe-aFVP~g----yqAYsD~pLPIG~GqTISaP~VvAlLLElLke-d------------------- 594 (687)
+++.+.......+.|+ .-.|-+ +..|.+..+.++.+..|++|++...+-..+.. .
T Consensus 51 l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~ 130 (506)
T PRK01544 51 LNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGND 130 (506)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 4444433333333343 334544 46788899999999999999876555433311 0
Q ss_pred -----CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CC
Q psy14969 595 -----LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQ 665 (687)
Q Consensus 595 -----LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----da 665 (687)
..++.+|||||||||+++..++... |.++|+|+|+++.+++.|++|+..+++ .+++.++.+|.. ..
T Consensus 131 ~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~~~~~~ 205 (506)
T PRK01544 131 ISSNCNDKFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFENIEKQ 205 (506)
T ss_pred ccccccCCCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhhhCcCC
Confidence 1134689999999999999999876 578999999999999999999998886 567888888853 23
Q ss_pred CccEEEE
Q psy14969 666 DASRVNI 672 (687)
Q Consensus 666 PFDLILV 672 (687)
.||+|+.
T Consensus 206 ~fDlIvs 212 (506)
T PRK01544 206 KFDFIVS 212 (506)
T ss_pred CccEEEE
Confidence 5887765
No 31
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.89 E-value=1.2e-08 Score=98.56 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=63.3
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccE
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASR 669 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDL 669 (687)
.++++.+|||||||+|+.+..+++.. +.++|+|+|+++.|++.|+++++..++ . ++.++.+++.. .+||+
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l----~-~i~~~~~d~~~~~~~~~fDl 115 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL----K-NVTVVHGRAEEFGQEEKFDV 115 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC----C-CEEEEeccHhhCCCCCCccE
Confidence 35568999999999999999999876 578999999999999999999999987 3 48888888654 36998
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
|+..
T Consensus 116 V~~~ 119 (187)
T PRK00107 116 VTSR 119 (187)
T ss_pred EEEc
Confidence 8874
No 32
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.89 E-value=1.2e-08 Score=101.69 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=63.2
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----cc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----AS 668 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FD 668 (687)
.+.++.+|||||||||+++..+++..++.++|+|+|++++|++.|+++...... ....++.++.+++..+| ||
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEe
Confidence 567889999999999999999998876678999999999999999987642110 00247889999877544 78
Q ss_pred EEEEEec
Q psy14969 669 RVNISVE 675 (687)
Q Consensus 669 LILVVfA 675 (687)
.|++.+.
T Consensus 148 ~V~~~~~ 154 (261)
T PLN02233 148 AITMGYG 154 (261)
T ss_pred EEEEecc
Confidence 8877654
No 33
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.2e-08 Score=103.84 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=67.6
Q ss_pred CCCCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCC-eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969 563 NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGD-TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 563 qAYsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~-RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN 641 (687)
..|....+.+..+..+++|.+..++-..+. ...... +|||||||||.+++.++... |.++|+|+|+|+.+++.|++|
T Consensus 76 ~~f~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALAREN 153 (280)
T ss_pred CeecceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHH
Confidence 356677788889999999987766655331 122222 79999999999999999997 578999999999999999999
Q ss_pred HHHcCC
Q psy14969 642 IRKNHA 647 (687)
Q Consensus 642 LKkaG~ 647 (687)
++.+++
T Consensus 154 a~~~~l 159 (280)
T COG2890 154 AERNGL 159 (280)
T ss_pred HHHcCC
Confidence 999985
No 34
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.86 E-value=9.3e-09 Score=98.06 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNI 672 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILV 672 (687)
++.+|||||||+|+++..++... +.++|+|+|+++.|++.|++++++.++ .++.++.+++.. .+||+|+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~~~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDFQHEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhccccCCccEEEe
Confidence 48899999999999999998765 578999999999999999999999876 358999998764 46898766
Q ss_pred E
Q psy14969 673 S 673 (687)
Q Consensus 673 V 673 (687)
.
T Consensus 116 ~ 116 (181)
T TIGR00138 116 R 116 (181)
T ss_pred h
Confidence 4
No 35
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.1e-08 Score=104.49 Aligned_cols=93 Identities=24% Similarity=0.292 Sum_probs=80.2
Q ss_pred CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969 575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654 (687)
Q Consensus 575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR 654 (687)
+..+..|.-.++++..+ .+.+|++|||.|+|||.+|+.||..++|.|+|+++|+.++.++.|++|++.+++ .++
T Consensus 74 ~tQiIyPKD~~~I~~~~--gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d~ 147 (256)
T COG2519 74 RTQIIYPKDAGYIVARL--GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GDR 147 (256)
T ss_pred CCceecCCCHHHHHHHc--CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----ccc
Confidence 34455666778888777 899999999999999999999999999999999999999999999999999988 556
Q ss_pred EEEEEcCCC----CCCccEEEEE
Q psy14969 655 VNIMRTLPP----QQDASRVNIS 673 (687)
Q Consensus 655 I~LI~GDAe----daPFDLILVV 673 (687)
+.+..+|.. ..+||+|++.
T Consensus 148 v~~~~~Dv~~~~~~~~vDav~LD 170 (256)
T COG2519 148 VTLKLGDVREGIDEEDVDAVFLD 170 (256)
T ss_pred eEEEeccccccccccccCEEEEc
Confidence 888888854 2478988876
No 36
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.85 E-value=2.2e-08 Score=100.69 Aligned_cols=106 Identities=21% Similarity=0.266 Sum_probs=80.7
Q ss_pred CCCCCCCccccCCcccCcHHHHHHHHHHhhh--cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 563 NPYHDYSVMLENCSYLNSPSFIASSLEPALL--KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 563 qAYsD~pLPIG~GqTISaP~VvAlLLElLke--dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
..|.+..+.++.+..+++|.+..++...+.. ...++.+|||+|||+|.++..++... +..+|+|+|+++.+++.|++
T Consensus 78 ~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~ 156 (284)
T TIGR00536 78 KEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEE 156 (284)
T ss_pred ceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 4566777888888888888665554443321 11223699999999999999999887 46799999999999999999
Q ss_pred HHHHcCCCccCCCcEEEEEcCCCC----CCccEEEEE
Q psy14969 641 NIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNIS 673 (687)
Q Consensus 641 NLKkaG~~VaSsgRI~LI~GDAed----aPFDLILVV 673 (687)
|++.+++ .+++.++.+|... .+||+|+..
T Consensus 157 n~~~~~~----~~~v~~~~~d~~~~~~~~~fDlIvsN 189 (284)
T TIGR00536 157 NAEKNQL----EHRVEFIQSNLFEPLAGQKIDIIVSN 189 (284)
T ss_pred HHHHcCC----CCcEEEEECchhccCcCCCccEEEEC
Confidence 9999886 4568999888532 268877553
No 37
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.83 E-value=1.7e-08 Score=101.83 Aligned_cols=91 Identities=11% Similarity=0.089 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT 660 (687)
Q Consensus 581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G 660 (687)
|...+++..++ ...+.++||||||++||.|.+||..++++|+|+++|++++.++.|+++++++|+ .++|.++.|
T Consensus 65 ~~~g~lL~~l~--~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G 138 (247)
T PLN02589 65 ADEGQFLNMLL--KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREG 138 (247)
T ss_pred HHHHHHHHHHH--HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEec
Confidence 44444444333 455778999999999999999999987789999999999999999999999998 789999999
Q ss_pred CCCC------------CCccEEEEEecCC
Q psy14969 661 LPPQ------------QDASRVNISVEPQ 677 (687)
Q Consensus 661 DAed------------aPFDLILVVfAP~ 677 (687)
++.+ .+||.|++.++.-
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~ 167 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDADKD 167 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCCHH
Confidence 8632 4899999988743
No 38
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.82 E-value=4e-08 Score=95.28 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=62.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC---ccEE
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD---ASRV 670 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP---FDLI 670 (687)
+.++.+|||||||+|..+..+++.+ .|.++|+|+|+++.|++.|+++++..+. ..++.++.++....+ +|+|
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~d~v 126 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVEIKNASMV 126 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCCCCCCCEE
Confidence 4578899999999999999999875 3578999999999999999999987654 457899999876544 6766
Q ss_pred EEEe
Q psy14969 671 NISV 674 (687)
Q Consensus 671 LVVf 674 (687)
++.+
T Consensus 127 ~~~~ 130 (239)
T TIGR00740 127 ILNF 130 (239)
T ss_pred eeec
Confidence 5543
No 39
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.81 E-value=2.9e-08 Score=92.67 Aligned_cols=81 Identities=23% Similarity=0.266 Sum_probs=64.8
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP- 663 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe- 663 (687)
..+++.+. ..++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.|+++++.+++ .. +.++.+|..
T Consensus 21 ~lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~----~~-v~~~~~d~~~ 92 (170)
T PF05175_consen 21 RLLLDNLP--KHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL----EN-VEVVQSDLFE 92 (170)
T ss_dssp HHHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC----TT-EEEEESSTTT
T ss_pred HHHHHHHh--hccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc----cc-cccccccccc
Confidence 34555552 2267899999999999999999886 577899999999999999999999997 33 888888853
Q ss_pred ---CCCccEEEEE
Q psy14969 664 ---QQDASRVNIS 673 (687)
Q Consensus 664 ---daPFDLILVV 673 (687)
...||+|+..
T Consensus 93 ~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 93 ALPDGKFDLIVSN 105 (170)
T ss_dssp TCCTTCEEEEEE-
T ss_pred cccccceeEEEEc
Confidence 3568877554
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.81 E-value=3.9e-08 Score=94.00 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=65.3
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
+...+++.+...+.++.+|||||||+|.++..++... .+|+|+|+++.|++.|++++...+. ..++.+..++.
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~ 113 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECCh
Confidence 4445555552114568899999999999999998763 3899999999999999999987765 35788888886
Q ss_pred CC--CCccEEEEE
Q psy14969 663 PQ--QDASRVNIS 673 (687)
Q Consensus 663 ed--aPFDLILVV 673 (687)
.. ..||+|+..
T Consensus 114 ~~~~~~fD~ii~~ 126 (219)
T TIGR02021 114 LSLCGEFDIVVCM 126 (219)
T ss_pred hhCCCCcCEEEEh
Confidence 54 448988764
No 41
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.80 E-value=3e-08 Score=97.89 Aligned_cols=81 Identities=30% Similarity=0.249 Sum_probs=62.3
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
...+++.+...+.++.+|||||||+|+++..+++... .+|+|+|+++.+++.|++|++.+++ ..++.+..++.
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~~- 178 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGDL- 178 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCCC-
Confidence 3344555433456889999999999999998776542 3799999999999999999999886 45566666653
Q ss_pred CCCccEEEEE
Q psy14969 664 QQDASRVNIS 673 (687)
Q Consensus 664 daPFDLILVV 673 (687)
+||+|+..
T Consensus 179 --~fD~Vvan 186 (250)
T PRK00517 179 --KADVIVAN 186 (250)
T ss_pred --CcCEEEEc
Confidence 79988754
No 42
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.6e-08 Score=105.20 Aligned_cols=87 Identities=31% Similarity=0.274 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC-
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL- 661 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD- 661 (687)
+..++++++....++|.+|||+|||||.++++++++.. .+|+|+|++|.+++.|+.|+..+++... .++.....+
T Consensus 148 TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~--~~~~~~~~~~ 223 (300)
T COG2264 148 TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELL--VQAKGFLLLE 223 (300)
T ss_pred hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchh--hhcccccchh
Confidence 56677777766678999999999999999999998864 5899999999999999999999998310 112222212
Q ss_pred -CCCCCccEEEEE
Q psy14969 662 -PPQQDASRVNIS 673 (687)
Q Consensus 662 -AedaPFDLILVV 673 (687)
....+||+|+.+
T Consensus 224 ~~~~~~~DvIVAN 236 (300)
T COG2264 224 VPENGPFDVIVAN 236 (300)
T ss_pred hcccCcccEEEeh
Confidence 234689988764
No 43
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.77 E-value=3.6e-08 Score=101.96 Aligned_cols=80 Identities=24% Similarity=0.201 Sum_probs=68.3
Q ss_pred HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-
Q psy14969 586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ- 664 (687)
Q Consensus 586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed- 664 (687)
.+++.+ ++++|++|||||||.|.++..+|+..+ .+|+|+++|+++.+.|+++++..|. ..++++...|-.+
T Consensus 63 ~~~~kl--~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v~v~l~d~rd~ 134 (283)
T COG2230 63 LILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGL----EDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHhc--CCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCC----CcccEEEecccccc
Confidence 334444 899999999999999999999999974 6999999999999999999999998 5688888777543
Q ss_pred -CCccEEEEE
Q psy14969 665 -QDASRVNIS 673 (687)
Q Consensus 665 -aPFDLILVV 673 (687)
.+||.|+.+
T Consensus 135 ~e~fDrIvSv 144 (283)
T COG2230 135 EEPFDRIVSV 144 (283)
T ss_pred ccccceeeeh
Confidence 449999776
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=98.76 E-value=5.9e-08 Score=100.37 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----CccEE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DASRV 670 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFDLI 670 (687)
.++.+|||||||+|.++..|++..+ ++|+|||+++.+++.|+++.+..++ ..++.++.+|+... .||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCcccCCCCCCCccEE
Confidence 5788999999999999999998763 5999999999999999999988876 56799999987543 48988
Q ss_pred EEEec
Q psy14969 671 NISVE 675 (687)
Q Consensus 671 LVVfA 675 (687)
+....
T Consensus 191 ~s~~~ 195 (340)
T PLN02244 191 WSMES 195 (340)
T ss_pred EECCc
Confidence 76543
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.76 E-value=3.6e-08 Score=94.72 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-C-------CCCcc
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-P-------QQDAS 668 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-e-------daPFD 668 (687)
++.+|||||||+|+.+..+++.. |..+|+|+|+++.+++.|++++...++ .++.++.+++ . ...||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL-----TNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC-----CCEEEEecCHHHHHHHHcCccccc
Confidence 67899999999999999999886 567999999999999999999988775 4688999987 2 34589
Q ss_pred EEEEEec
Q psy14969 669 RVNISVE 675 (687)
Q Consensus 669 LILVVfA 675 (687)
.|++.+.
T Consensus 114 ~V~~~~~ 120 (202)
T PRK00121 114 RIYLNFP 120 (202)
T ss_pred eEEEECC
Confidence 8987763
No 46
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.75 E-value=6.6e-08 Score=94.30 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=77.5
Q ss_pred CCCCCCCccccCCcccCcHHHHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969 563 NPYHDYSVMLENCSYLNSPSFIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 563 qAYsD~pLPIG~GqTISaP~VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN 641 (687)
..|.+..+.++.+..+++|.+...+-..+. ....++.+|||+|||+|..+..++... +..+|+|+|+++.+++.|+++
T Consensus 73 ~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred ceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 456666777778877877755433332221 134567899999999999999999887 577999999999999999999
Q ss_pred HHHcCCCccCCCcEEEEEcCCCC----CCccEEEEE
Q psy14969 642 IRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNIS 673 (687)
Q Consensus 642 LKkaG~~VaSsgRI~LI~GDAed----aPFDLILVV 673 (687)
+. ... ..++.++.+|... ..||+|+..
T Consensus 152 ~~-~~~----~~~i~~~~~d~~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 152 AK-HGL----GARVEFLQGDWFEPLPGGRFDLIVSN 182 (275)
T ss_pred HH-hCC----CCcEEEEEccccCcCCCCceeEEEEC
Confidence 88 222 3468888887643 468877553
No 47
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.74 E-value=4.3e-08 Score=98.37 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=65.5
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI 657 (687)
Q Consensus 578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L 657 (687)
+..+.+...+++.+ .+.++.+|||||||+|.+|..+++... +|+|+|+++.|++.+++++.. .++.+
T Consensus 25 l~~~~i~~~i~~~l--~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~--------~~v~~ 91 (272)
T PRK00274 25 LIDENILDKIVDAA--GPQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE--------DNLTI 91 (272)
T ss_pred CCCHHHHHHHHHhc--CCCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc--------CceEE
Confidence 34566788888877 678899999999999999999998863 899999999999999886532 37899
Q ss_pred EEcCCCCCCcc
Q psy14969 658 MRTLPPQQDAS 668 (687)
Q Consensus 658 I~GDAedaPFD 668 (687)
+.+|+...+++
T Consensus 92 i~~D~~~~~~~ 102 (272)
T PRK00274 92 IEGDALKVDLS 102 (272)
T ss_pred EEChhhcCCHH
Confidence 99998877764
No 48
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.72 E-value=8e-08 Score=91.83 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEE
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRV 670 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLI 670 (687)
..++.+|||+|||+|..+..||+.. .+|+|+|+++.|++.|+++.+..++ .++.+..+|... .+||+|
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~fD~I 99 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNNLTFDGEYDFI 99 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhhCCcCCCcCEE
Confidence 4467899999999999999999864 3899999999999999999988776 236666666442 358988
Q ss_pred EEEe
Q psy14969 671 NISV 674 (687)
Q Consensus 671 LVVf 674 (687)
+...
T Consensus 100 ~~~~ 103 (197)
T PRK11207 100 LSTV 103 (197)
T ss_pred EEec
Confidence 7664
No 49
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.72 E-value=4.4e-08 Score=99.60 Aligned_cols=82 Identities=26% Similarity=0.250 Sum_probs=62.5
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
...+++.+ .+++|++|||||||.|.++..+|+..+ .+|+||.+|++.++.|++++++.|+ .+++.+..+|..
T Consensus 51 ~~~~~~~~--~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~~ 122 (273)
T PF02353_consen 51 LDLLCEKL--GLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHTTT--T--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-GG
T ss_pred HHHHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeecc
Confidence 44455555 789999999999999999999999964 6999999999999999999999998 778999988854
Q ss_pred C--CCccEEEEE
Q psy14969 664 Q--QDASRVNIS 673 (687)
Q Consensus 664 d--aPFDLILVV 673 (687)
+ .+||.|+.+
T Consensus 123 ~~~~~fD~IvSi 134 (273)
T PF02353_consen 123 DLPGKFDRIVSI 134 (273)
T ss_dssp G---S-SEEEEE
T ss_pred ccCCCCCEEEEE
Confidence 3 479998876
No 50
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.72 E-value=8.9e-08 Score=91.55 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=71.3
Q ss_pred CCCCCccccCCcccCcHHHHH---HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969 565 YHDYSVMLENCSYLNSPSFIA---SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 565 YsD~pLPIG~GqTISaP~VvA---lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN 641 (687)
|.+..+.++.+..++.|.... .++..+ ...+.+|||+|||+|+.+..+++.. +...|+|+|+++.+++.|+++
T Consensus 55 ~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~---~~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~ 130 (251)
T TIGR03534 55 FYGLDFKVSPGVLIPRPDTEELVEAALERL---KKGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKN 130 (251)
T ss_pred EeceEEEECCCcccCCCChHHHHHHHHHhc---ccCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 334444455555555554333 333332 2345699999999999999999886 467999999999999999999
Q ss_pred HHHcCCCccCCCcEEEEEcCCC----CCCccEEEE
Q psy14969 642 IRKNHAHLLDEGVVNIMRTLPP----QQDASRVNI 672 (687)
Q Consensus 642 LKkaG~~VaSsgRI~LI~GDAe----daPFDLILV 672 (687)
++..++ .++.++.++.. ...||+|+.
T Consensus 131 ~~~~~~-----~~~~~~~~d~~~~~~~~~fD~Vi~ 160 (251)
T TIGR03534 131 AARLGL-----DNVTFLQSDWFEPLPGGKFDLIVS 160 (251)
T ss_pred HHHcCC-----CeEEEEECchhccCcCCceeEEEE
Confidence 998876 36888888863 345887755
No 51
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.72 E-value=9e-08 Score=102.05 Aligned_cols=86 Identities=27% Similarity=0.374 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
+...+++.+ .+.++.+|||+|||+|.++..+|+... +|+|+|+++.|++.|++|++.+++ .++.++.+|+
T Consensus 285 l~~~vl~~l--~~~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~-----~~v~~~~~d~ 354 (443)
T PRK13168 285 MVARALEWL--DPQPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGL-----DNVTFYHANL 354 (443)
T ss_pred HHHHHHHHh--cCCCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEeCh
Confidence 444555554 456788999999999999999998864 899999999999999999998886 3689999986
Q ss_pred CC---------CCccEEEEEecCCCcC
Q psy14969 663 PQ---------QDASRVNISVEPQKSG 680 (687)
Q Consensus 663 ed---------aPFDLILVVfAP~K~g 680 (687)
.. ..||+|+ ..|+..|
T Consensus 355 ~~~l~~~~~~~~~fD~Vi--~dPPr~g 379 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVL--LDPPRAG 379 (443)
T ss_pred HHhhhhhhhhcCCCCEEE--ECcCCcC
Confidence 42 3478764 4777765
No 52
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.71 E-value=1.1e-07 Score=96.10 Aligned_cols=85 Identities=19% Similarity=0.127 Sum_probs=63.6
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP- 662 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA- 662 (687)
..++++.+.....++.+|||||||+|+++..+++.. ..+|+|+|+++.+++.|++|+..+++ ..++.+..++.
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~~----~~~~~~~~~~~~ 219 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQV----SDRLQVKLIYLE 219 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCC----CcceEEEecccc
Confidence 444454443335678999999999999998888753 35899999999999999999998876 44566655532
Q ss_pred --CCCCccEEEEEe
Q psy14969 663 --PQQDASRVNISV 674 (687)
Q Consensus 663 --edaPFDLILVVf 674 (687)
...+||+|+...
T Consensus 220 ~~~~~~fDlVvan~ 233 (288)
T TIGR00406 220 QPIEGKADVIVANI 233 (288)
T ss_pred cccCCCceEEEEec
Confidence 235799887653
No 53
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.71 E-value=8.6e-08 Score=94.23 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR 669 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL 669 (687)
.++.+|||||||+|+++..+++.. .+|+|+|+++.|++.|+++++..++ ..++.++.++.. ...||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhhcCCCCCE
Confidence 456799999999999999999874 4899999999999999999998876 567888888753 346898
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
|+..
T Consensus 116 V~~~ 119 (255)
T PRK11036 116 ILFH 119 (255)
T ss_pred EEeh
Confidence 8754
No 54
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.71 E-value=6.9e-08 Score=95.12 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=63.7
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----Ccc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DAS 668 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFD 668 (687)
.+.++.+|||||||+|..+..+++..++.++|+|+|+++.+++.|+++....++ .++.++.++...+ .||
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhCCCCCCcee
Confidence 467899999999999999988888877778999999999999999999988876 4678888876543 478
Q ss_pred EEEEEe
Q psy14969 669 RVNISV 674 (687)
Q Consensus 669 LILVVf 674 (687)
+|+...
T Consensus 149 ~Vi~~~ 154 (272)
T PRK11873 149 VIISNC 154 (272)
T ss_pred EEEEcC
Confidence 776543
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.70 E-value=1.5e-07 Score=89.20 Aligned_cols=84 Identities=18% Similarity=0.048 Sum_probs=64.3
Q ss_pred HHHHHHHHhhh-cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969 583 FIASSLEPALL-KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL 661 (687)
Q Consensus 583 VvAlLLElLke-dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD 661 (687)
+...+++.+.. ...++.+|||||||+|+++..+++... .|+|+|+++.|++.|++++...+. ..++.+..++
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d 120 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGL----AGNITFEVGD 120 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcC
Confidence 34444554421 145678999999999999999987643 799999999999999999988765 3578888877
Q ss_pred CC--CCCccEEEEE
Q psy14969 662 PP--QQDASRVNIS 673 (687)
Q Consensus 662 Ae--daPFDLILVV 673 (687)
.+ ..+||+|+..
T Consensus 121 ~~~~~~~fD~v~~~ 134 (230)
T PRK07580 121 LESLLGRFDTVVCL 134 (230)
T ss_pred chhccCCcCEEEEc
Confidence 44 3559988764
No 56
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.69 E-value=1.1e-07 Score=90.81 Aligned_cols=79 Identities=15% Similarity=0.062 Sum_probs=58.6
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
+..+++.+ ...++.+|||||||+|+++..+|+.. ++|+|+|+++.|++.|+++.+..++ .+.+..++..
T Consensus 19 ~~~l~~~~--~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~ 87 (195)
T TIGR00477 19 HSAVREAV--KTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL------PLRTDAYDIN 87 (195)
T ss_pred hHHHHHHh--ccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccch
Confidence 33444444 34467799999999999999999864 4899999999999999999888776 2444444422
Q ss_pred ----CCCccEEEEE
Q psy14969 664 ----QQDASRVNIS 673 (687)
Q Consensus 664 ----daPFDLILVV 673 (687)
...||.|+..
T Consensus 88 ~~~~~~~fD~I~~~ 101 (195)
T TIGR00477 88 AAALNEDYDFIFST 101 (195)
T ss_pred hccccCCCCEEEEe
Confidence 2358988765
No 57
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.68 E-value=1.2e-07 Score=94.73 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=65.8
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCcc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDAS 668 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFD 668 (687)
.+++|.+|||+|||+|..|..+++++++.|.|+|+|+++.+++.+++++++.++ .++.++.+|+.. ..||
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHHHhhhhccCCC
Confidence 678999999999999999999999886668999999999999999999999987 357888888653 3499
Q ss_pred EEEEEe
Q psy14969 669 RVNISV 674 (687)
Q Consensus 669 LILVVf 674 (687)
.|++..
T Consensus 143 ~Vl~D~ 148 (264)
T TIGR00446 143 AILLDA 148 (264)
T ss_pred EEEEcC
Confidence 887764
No 58
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.68 E-value=1.2e-07 Score=101.06 Aligned_cols=78 Identities=15% Similarity=0.295 Sum_probs=66.9
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--------
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-------- 665 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-------- 665 (687)
.+++|.+|||+|||+|+.|..+++++++.|+|+|+|+++.+++.++++++..|+ .++.++.+|+...
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhccccccccc
Confidence 678899999999999999999999886678999999999999999999999997 3588888887543
Q ss_pred -CccEEEEEecCC
Q psy14969 666 -DASRVNISVEPQ 677 (687)
Q Consensus 666 -PFDLILVVfAP~ 677 (687)
.||.|++.+ ||
T Consensus 324 ~~fD~Vl~Da-PC 335 (434)
T PRK14901 324 GYFDRILLDA-PC 335 (434)
T ss_pred ccCCEEEEeC-CC
Confidence 489887654 44
No 59
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.67 E-value=1.5e-07 Score=96.28 Aligned_cols=74 Identities=14% Similarity=0.093 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCccEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDASRV 670 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPFDLI 670 (687)
++.+|||+|||+|.++..+|+.. ++|+|+|+++.+++.|+++++.+++ .++.++.+|+.. ..||.|
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l-----~~v~~~~~D~~~~~~~~~~~~D~V 244 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL-----TNVQFQALDSTQFATAQGEVPDLV 244 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEcCHHHHHHhcCCCCeEE
Confidence 56899999999999999999864 4899999999999999999999886 468999998643 247866
Q ss_pred EEEecCCCcC
Q psy14969 671 NISVEPQKSG 680 (687)
Q Consensus 671 LVVfAP~K~g 680 (687)
++ .|++.|
T Consensus 245 v~--dPPr~G 252 (315)
T PRK03522 245 LV--NPPRRG 252 (315)
T ss_pred EE--CCCCCC
Confidence 54 588776
No 60
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.66 E-value=8.5e-08 Score=81.31 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=53.9
Q ss_pred EEEEcCCccHHHHHHHHhc--CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEEEEE
Q psy14969 601 VLDVGTGSGYTAACLGYMV--RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRVNIS 673 (687)
Q Consensus 601 VLDIGCGTGYLTAaLArLV--GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLILVV 673 (687)
|||+|||+|..+..+++.+ ++..+++|+|++++|++.|+++....++ +++++++|+.+ .+||+|+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999987 3336999999999999999999988765 78889999864 468888774
Q ss_pred e
Q psy14969 674 V 674 (687)
Q Consensus 674 f 674 (687)
.
T Consensus 75 ~ 75 (101)
T PF13649_consen 75 G 75 (101)
T ss_dssp T
T ss_pred C
Confidence 3
No 61
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.66 E-value=1.1e-07 Score=97.65 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCcc-cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC
Q psy14969 574 NCSY-LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE 652 (687)
Q Consensus 574 ~GqT-ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs 652 (687)
.|++ +..|.+...+++.+ .+.++.+|||||||+|.+|..+++... +|+|+|+++.|++.+++++...+. .
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~--~~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~----~ 84 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKA--AIKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPL----A 84 (294)
T ss_pred CCccccCCHHHHHHHHHhc--CCCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCC----C
Confidence 3444 36788999999887 678899999999999999999998754 899999999999999999987764 4
Q ss_pred CcEEEEEcCCCCCC---ccEEE
Q psy14969 653 GVVNIMRTLPPQQD---ASRVN 671 (687)
Q Consensus 653 gRI~LI~GDAedaP---FDLIL 671 (687)
+++.++.+|+...+ ||.|+
T Consensus 85 ~~v~ii~~Dal~~~~~~~d~Vv 106 (294)
T PTZ00338 85 SKLEVIEGDALKTEFPYFDVCV 106 (294)
T ss_pred CcEEEEECCHhhhcccccCEEE
Confidence 68999999986443 56543
No 62
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=1.7e-07 Score=100.27 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=65.6
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccE
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASR 669 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDL 669 (687)
.+.+|.+|||+|||+|+.|..+++.+++.++|+|+|+++.+++.+++++++.|+ .++.++.+|+.. .+||.
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~v~~~~~Da~~~~~~~~fD~ 321 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----TIIETIEGDARSFSPEEQPDA 321 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----CeEEEEeCcccccccCCCCCE
Confidence 577899999999999999999998876568999999999999999999999987 368888888654 35999
Q ss_pred EEEEe
Q psy14969 670 VNISV 674 (687)
Q Consensus 670 ILVVf 674 (687)
|++..
T Consensus 322 Vl~D~ 326 (445)
T PRK14904 322 ILLDA 326 (445)
T ss_pred EEEcC
Confidence 87653
No 63
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.66 E-value=1.4e-07 Score=93.87 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=66.3
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI 657 (687)
Q Consensus 578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L 657 (687)
+..+.+...+++.+ .+.++.+|||||||+|.+|..+++... +|+|+|+++.+++.+++++.. . +++.+
T Consensus 12 l~d~~~~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~-----~~v~i 79 (258)
T PRK14896 12 LIDDRVVDRIVEYA--EDTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--A-----GNVEI 79 (258)
T ss_pred cCCHHHHHHHHHhc--CCCCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--C-----CCEEE
Confidence 46778888998887 677899999999999999999998843 899999999999999988754 1 47899
Q ss_pred EEcCCCCCCc
Q psy14969 658 MRTLPPQQDA 667 (687)
Q Consensus 658 I~GDAedaPF 667 (687)
+.+|+...++
T Consensus 80 i~~D~~~~~~ 89 (258)
T PRK14896 80 IEGDALKVDL 89 (258)
T ss_pred EEeccccCCc
Confidence 9999876553
No 64
>PRK08317 hypothetical protein; Provisional
Probab=98.65 E-value=2.7e-07 Score=85.84 Aligned_cols=83 Identities=30% Similarity=0.416 Sum_probs=64.3
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
....+++.+ .+.++.+|||+|||+|..+..++...++.++|+|+|+++.+++.|+++.... ..++.+..++.
T Consensus 7 ~~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~ 78 (241)
T PRK08317 7 YRARTFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDA 78 (241)
T ss_pred HHHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEeccc
Confidence 344455555 6778899999999999999999998766789999999999999999883332 23677777775
Q ss_pred CC-----CCccEEEEE
Q psy14969 663 PQ-----QDASRVNIS 673 (687)
Q Consensus 663 ed-----aPFDLILVV 673 (687)
.. ..||+|+..
T Consensus 79 ~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 79 DGLPFPDGSFDAVRSD 94 (241)
T ss_pred ccCCCCCCCceEEEEe
Confidence 43 458887764
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.65 E-value=1.9e-07 Score=87.03 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---CCCccEEE
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---QQDASRVN 671 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---daPFDLIL 671 (687)
..++.+|||+|||+|+++..+++... +|+|+|+++.+++.|+++++..+. ++.++.+|.. ...||.|+
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~fD~Vi 87 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGVRGKFDVIL 87 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC------ceEEEEcccccccCCcccEEE
Confidence 44678999999999999999998753 899999999999999999988765 4677777753 34689876
Q ss_pred EE
Q psy14969 672 IS 673 (687)
Q Consensus 672 VV 673 (687)
..
T Consensus 88 ~n 89 (179)
T TIGR00537 88 FN 89 (179)
T ss_pred EC
Confidence 54
No 66
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.65 E-value=1.2e-07 Score=80.78 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-------CCCCccEE
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-------PQQDASRV 670 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-------edaPFDLI 670 (687)
|.+|||+|||+|.++..+++.. ..+++|+|+++.+++.|+.++...++ ..++.++.+|. ...+||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhhccCceeEEE
Confidence 5689999999999999999886 45999999999999999999999887 67899999884 34567876
Q ss_pred EEE
Q psy14969 671 NIS 673 (687)
Q Consensus 671 LVV 673 (687)
+..
T Consensus 75 v~n 77 (117)
T PF13659_consen 75 VTN 77 (117)
T ss_dssp EE-
T ss_pred EEC
Confidence 544
No 67
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.63 E-value=1.2e-07 Score=92.98 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=58.0
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP- 663 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe- 663 (687)
..+++.+ .+.++.+|||||||+|.++..+++.. |.++|+|+|+++.|++.|+++ + +.++.+|+.
T Consensus 19 ~~ll~~l--~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~----~--------~~~~~~d~~~ 83 (255)
T PRK14103 19 YDLLARV--GAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER----G--------VDARTGDVRD 83 (255)
T ss_pred HHHHHhC--CCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc----C--------CcEEEcChhh
Confidence 4445555 45678999999999999999999887 577999999999999999763 2 345555543
Q ss_pred ---CCCccEEEEEe
Q psy14969 664 ---QQDASRVNISV 674 (687)
Q Consensus 664 ---daPFDLILVVf 674 (687)
..+||+|+...
T Consensus 84 ~~~~~~fD~v~~~~ 97 (255)
T PRK14103 84 WKPKPDTDVVVSNA 97 (255)
T ss_pred CCCCCCceEEEEeh
Confidence 34699988765
No 68
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.62 E-value=2.9e-07 Score=92.00 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=63.5
Q ss_pred CCCCCCCCccccCCcccCcHHHHHHHHHHhhh-c-CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 562 RNPYHDYSVMLENCSYLNSPSFIASSLEPALL-K-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 562 yqAYsD~pLPIG~GqTISaP~VvAlLLElLke-d-LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
...|.+..+.++.+..+..+.+..++-..+.. . ..++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|+
T Consensus 49 ~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~ 127 (251)
T TIGR03704 49 WAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCAR 127 (251)
T ss_pred cCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHH
Confidence 35677777888888887666554433322210 1 1234589999999999999999876 4569999999999999999
Q ss_pred HHHHHcCC
Q psy14969 640 ENIRKNHA 647 (687)
Q Consensus 640 KNLKkaG~ 647 (687)
+|++.++.
T Consensus 128 ~N~~~~~~ 135 (251)
T TIGR03704 128 RNLADAGG 135 (251)
T ss_pred HHHHHcCC
Confidence 99988653
No 69
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.62 E-value=1.8e-07 Score=86.83 Aligned_cols=76 Identities=22% Similarity=0.281 Sum_probs=60.2
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
..+++.+ .+.++.+|||||||+|.++..+++.. ++|+++|+++.+++.+++++... .++.++.+|+..
T Consensus 3 ~~i~~~~--~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~-------~~v~ii~~D~~~ 70 (169)
T smart00650 3 DKIVRAA--NLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAA-------DNLTVIHGDALK 70 (169)
T ss_pred HHHHHhc--CCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccC-------CCEEEEECchhc
Confidence 3455555 56788899999999999999999874 48999999999999999987542 378889998765
Q ss_pred CC-----ccEEEE
Q psy14969 665 QD-----ASRVNI 672 (687)
Q Consensus 665 aP-----FDLILV 672 (687)
.+ +|.|+.
T Consensus 71 ~~~~~~~~d~vi~ 83 (169)
T smart00650 71 FDLPKLQPYKVVG 83 (169)
T ss_pred CCccccCCCEEEE
Confidence 43 565543
No 70
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=2.6e-07 Score=98.50 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=69.0
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
..+...+ .+.++.+|||+|||+|..|..+++.+++.++|+|+|+++.+++.+++|+++.++ .++.++.+|+..
T Consensus 240 ~lv~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~ 312 (444)
T PRK14902 240 MLVAPAL--DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARK 312 (444)
T ss_pred HHHHHHh--CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCccc
Confidence 3444444 577889999999999999999999876678999999999999999999999987 348899998754
Q ss_pred ------CCccEEEEEe
Q psy14969 665 ------QDASRVNISV 674 (687)
Q Consensus 665 ------aPFDLILVVf 674 (687)
..||.|++..
T Consensus 313 ~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 313 VHEKFAEKFDKILVDA 328 (444)
T ss_pred ccchhcccCCEEEEcC
Confidence 2589887764
No 71
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=2.4e-07 Score=99.34 Aligned_cols=78 Identities=17% Similarity=0.330 Sum_probs=67.2
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDA 667 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPF 667 (687)
.+.+|.+|||+|||+|..|..++.++++.++|+|+|+++.+++.+++++++.++ .++.++.+|+.. ..|
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhhhhhccC
Confidence 678999999999999999999999986678999999999999999999999987 357888888754 349
Q ss_pred cEEEEEecCC
Q psy14969 668 SRVNISVEPQ 677 (687)
Q Consensus 668 DLILVVfAP~ 677 (687)
|.|++.+ ||
T Consensus 309 D~Vl~Da-PC 317 (431)
T PRK14903 309 DRILVDA-PC 317 (431)
T ss_pred CEEEECC-CC
Confidence 9887764 44
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=98.61 E-value=3.3e-07 Score=88.68 Aligned_cols=72 Identities=26% Similarity=0.184 Sum_probs=59.0
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccE
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASR 669 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDL 669 (687)
.+.++.+|||+|||+|.++..+++.. .++|+++|+++.+++.|++++...++ ++.++.+|.. ...||+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~~~~d~~~~~~~~~fD~ 104 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAGV------DVDVRRGDWARAVEFRPFDV 104 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhCC------eeEEEECchhhhccCCCeeE
Confidence 46778999999999999999998762 35899999999999999999988776 4667777653 346898
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
|+..
T Consensus 105 Vi~n 108 (223)
T PRK14967 105 VVSN 108 (223)
T ss_pred EEEC
Confidence 8764
No 73
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.61 E-value=2.3e-07 Score=90.40 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
...++..+ .+.++.+|||||||+|.++..+++.. +.++|+|+|+++.|++.|++++. ++.++.+|..
T Consensus 20 ~~~ll~~~--~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~ 86 (258)
T PRK01683 20 ARDLLARV--PLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP----------DCQFVEADIA 86 (258)
T ss_pred HHHHHhhC--CCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC----------CCeEEECchh
Confidence 33444444 46678999999999999999999887 46799999999999999998742 3455555543
Q ss_pred ----CCCccEEEEEec
Q psy14969 664 ----QQDASRVNISVE 675 (687)
Q Consensus 664 ----daPFDLILVVfA 675 (687)
..+||+|+....
T Consensus 87 ~~~~~~~fD~v~~~~~ 102 (258)
T PRK01683 87 SWQPPQALDLIFANAS 102 (258)
T ss_pred ccCCCCCccEEEEccC
Confidence 236898877643
No 74
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.60 E-value=1.9e-07 Score=98.65 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
+...+.+.+ .+.++.+|||+|||+|.++..+|+.+. +|+|+|+++.+++.|++|++.+++ .++.++.+|+
T Consensus 280 l~~~~~~~l--~~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~d~ 349 (431)
T TIGR00479 280 LVDRALEAL--ELQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAGTL 349 (431)
T ss_pred HHHHHHHHh--ccCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeCCH
Confidence 344445544 456778999999999999999998764 899999999999999999999886 4789999996
Q ss_pred CC---------CCccEEEEEecCCCcC
Q psy14969 663 PQ---------QDASRVNISVEPQKSG 680 (687)
Q Consensus 663 ed---------aPFDLILVVfAP~K~g 680 (687)
.. ..||+| ++.|++.|
T Consensus 350 ~~~l~~~~~~~~~~D~v--i~dPPr~G 374 (431)
T TIGR00479 350 ETVLPKQPWAGQIPDVL--LLDPPRKG 374 (431)
T ss_pred HHHHHHHHhcCCCCCEE--EECcCCCC
Confidence 42 247765 46788776
No 75
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.60 E-value=1.4e-07 Score=91.67 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=53.2
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccE
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASR 669 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDL 669 (687)
.+.++.+|||||||+|+.+..|++.+ +.++|+|||+++.|++.|++++.. +.+..+++. ...||+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~----------~~~~~~d~~~~~~~~sfD~ 108 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPN----------INIIQGSLFDPFKDNFFDL 108 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCC----------CcEEEeeccCCCCCCCEEE
Confidence 45678899999999999999999876 467999999999999999986432 233444432 345888
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
|+..
T Consensus 109 V~~~ 112 (204)
T TIGR03587 109 VLTK 112 (204)
T ss_pred EEEC
Confidence 8764
No 76
>PRK04266 fibrillarin; Provisional
Probab=98.59 E-value=3.1e-07 Score=91.13 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=63.8
Q ss_pred HHHHHHHHHh-hhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969 582 SFIASSLEPA-LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT 660 (687)
Q Consensus 582 ~VvAlLLElL-kedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G 660 (687)
.+.+.++..+ ...+++|.+|||+|||||+.+..+++.++ .|+|+|+|+++.|++.+.+++++. .++.++.+
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~ 127 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-------KNIIPILA 127 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEEC
Confidence 3455555422 11678999999999999999999999985 789999999999999887776543 24666777
Q ss_pred CCCC--------CCccEEEEEec
Q psy14969 661 LPPQ--------QDASRVNISVE 675 (687)
Q Consensus 661 DAed--------aPFDLILVVfA 675 (687)
|+.. ..||+|+...+
T Consensus 128 D~~~~~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 128 DARKPERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred CCCCcchhhhccccCCEEEECCC
Confidence 7542 34888876543
No 77
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.58 E-value=6e-07 Score=84.41 Aligned_cols=85 Identities=26% Similarity=0.390 Sum_probs=65.3
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
....++..+ ...++.+|||||||+|..+..++...++..+|+++|+++.+++.|++++...+. ..++.++.++.
T Consensus 39 ~~~~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~ 112 (239)
T PRK00216 39 WRRKTIKWL--GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDA 112 (239)
T ss_pred HHHHHHHHh--CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEeccc
Confidence 334445554 455778999999999999999998874357999999999999999999877554 34677777775
Q ss_pred CC-----CCccEEEEE
Q psy14969 663 PQ-----QDASRVNIS 673 (687)
Q Consensus 663 ed-----aPFDLILVV 673 (687)
.. .+||+|+..
T Consensus 113 ~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 113 EALPFPDNSFDAVTIA 128 (239)
T ss_pred ccCCCCCCCccEEEEe
Confidence 43 458887654
No 78
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.4e-07 Score=90.21 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=69.9
Q ss_pred cccCcHHHHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969 576 SYLNSPSFIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654 (687)
Q Consensus 576 qTISaP~VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR 654 (687)
|+.+.+.+.+.++.... ...-.|..|+|+|||||.++...+.+. + .+|+|+|+++++++.|++|..+. .++
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a-~~V~~vdiD~~a~ei~r~N~~~l------~g~ 94 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG-A-SRVLAVDIDPEALEIARANAEEL------LGD 94 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC-C-cEEEEEecCHHHHHHHHHHHHhh------CCc
Confidence 44455556666655542 244467889999999999999887664 3 49999999999999999999994 368
Q ss_pred EEEEEcCCCC--CCccEEEEEecCCC
Q psy14969 655 VNIMRTLPPQ--QDASRVNISVEPQK 678 (687)
Q Consensus 655 I~LI~GDAed--aPFDLILVVfAP~K 678 (687)
+.++.+|..+ .++| +++-.|+-
T Consensus 95 v~f~~~dv~~~~~~~d--tvimNPPF 118 (198)
T COG2263 95 VEFVVADVSDFRGKFD--TVIMNPPF 118 (198)
T ss_pred eEEEEcchhhcCCccc--eEEECCCC
Confidence 9999999885 4566 44444543
No 79
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.56 E-value=3.2e-07 Score=92.38 Aligned_cols=69 Identities=17% Similarity=0.111 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVNI 672 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLILV 672 (687)
++.+|||||||+|..+..+++.. .+|+|+|+++.+++.|+++++..++ ++.+..+|.. ...||+|+.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~~~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSASIQEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhcccccCCccEEEE
Confidence 45699999999999999999864 4999999999999999999988776 4566655543 345898876
Q ss_pred Ee
Q psy14969 673 SV 674 (687)
Q Consensus 673 Vf 674 (687)
..
T Consensus 191 ~~ 192 (287)
T PRK12335 191 TV 192 (287)
T ss_pred cc
Confidence 53
No 80
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.56 E-value=4.6e-07 Score=96.28 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=66.3
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP- 663 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe- 663 (687)
..+...+ .+.+|.+|||+|||+|+.|..+++.++ .++|+|+|+++.+++.+++++++.++ ..++.+..++..
T Consensus 228 ~~~~~~L--~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~~~d~~~ 300 (426)
T TIGR00563 228 QWVATWL--APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL----TIKAETKDGDGRG 300 (426)
T ss_pred HHHHHHh--CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecccccc
Confidence 3444445 678899999999999999999999885 78999999999999999999999987 223444666643
Q ss_pred ------CCCccEEEEEe
Q psy14969 664 ------QQDASRVNISV 674 (687)
Q Consensus 664 ------daPFDLILVVf 674 (687)
...||.|++.+
T Consensus 301 ~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 301 PSQWAENEQFDRILLDA 317 (426)
T ss_pred ccccccccccCEEEEcC
Confidence 24599887754
No 81
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.54 E-value=2.9e-07 Score=87.69 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--------CCCcc
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--------QQDAS 668 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--------daPFD 668 (687)
...+|||||||+|.++..+|+.. |.+.|+|+|+++.+++.|++++...++ .++.++.+++. ...+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL-----KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCEEEEccCHHHHHHhhCCCCcee
Confidence 45699999999999999999886 678999999999999999999998876 47899999864 23588
Q ss_pred EEEEEec
Q psy14969 669 RVNISVE 675 (687)
Q Consensus 669 LILVVfA 675 (687)
.|++.+.
T Consensus 90 ~v~~~~p 96 (194)
T TIGR00091 90 KVFLNFP 96 (194)
T ss_pred EEEEECC
Confidence 8887763
No 82
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.54 E-value=4.1e-07 Score=86.54 Aligned_cols=69 Identities=22% Similarity=0.187 Sum_probs=58.8
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEE
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNI 672 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILV 672 (687)
++|||||||+|..+..+++.. +..+|+|+|+++.+++.|+++++..++ ..++.++.+|... ..||+|+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDPFPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCCCCCCCCEeeh
Confidence 379999999999999999887 467999999999999999999999887 6688888877632 35898865
No 83
>PRK04457 spermidine synthase; Provisional
Probab=98.54 E-value=3.8e-07 Score=91.76 Aligned_cols=75 Identities=8% Similarity=0.165 Sum_probs=62.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCcc
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDAS 668 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFD 668 (687)
..++.+|||||||+|+++..+++.. |..+|+++|+++++++.|++++...+. ..++.++.+|+. ..+||
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~----~~rv~v~~~Da~~~l~~~~~~yD 138 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN----GERFEVIEADGAEYIAVHRHSTD 138 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC----CCceEEEECCHHHHHHhCCCCCC
Confidence 3456899999999999999999887 578999999999999999998754432 468999999973 24699
Q ss_pred EEEEEe
Q psy14969 669 RVNISV 674 (687)
Q Consensus 669 LILVVf 674 (687)
+|++.+
T Consensus 139 ~I~~D~ 144 (262)
T PRK04457 139 VILVDG 144 (262)
T ss_pred EEEEeC
Confidence 998874
No 84
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.53 E-value=4e-07 Score=89.97 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=66.4
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969 577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN 656 (687)
Q Consensus 577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~ 656 (687)
.+..+.+...+++.+ .+.++.+|||||||+|.+|..|++... .|+++|+++.+++.+++++.. ..++.
T Consensus 11 fl~d~~i~~~i~~~~--~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~-------~~~v~ 78 (253)
T TIGR00755 11 FLIDESVIQKIVEAA--NVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL-------YERLE 78 (253)
T ss_pred cCCCHHHHHHHHHhc--CCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc-------CCcEE
Confidence 356777888888887 677889999999999999999999874 699999999999999987643 24788
Q ss_pred EEEcCCCCCCc
Q psy14969 657 IMRTLPPQQDA 667 (687)
Q Consensus 657 LI~GDAedaPF 667 (687)
++.+|+...++
T Consensus 79 v~~~D~~~~~~ 89 (253)
T TIGR00755 79 VIEGDALKVDL 89 (253)
T ss_pred EEECchhcCCh
Confidence 99999876664
No 85
>KOG2904|consensus
Probab=98.52 E-value=5.4e-07 Score=94.12 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=82.4
Q ss_pred HHHHHHHhCCCccCCCCCC----CCCCCCCccccCCcccCcHHHHH---HHHHHhhh-cCCCCCeEEEEcCCccHHHHHH
Q psy14969 544 ELRDLMIKVDRKDFCPPNR----NPYHDYSVMLENCSYLNSPSFIA---SSLEPALL-KLKPGDTVLDVGTGSGYTAACL 615 (687)
Q Consensus 544 EV~qAMraVPReaFVP~gy----qAYsD~pLPIG~GqTISaP~VvA---lLLElLke-dLkpG~RVLDIGCGTGYLTAaL 615 (687)
.+..|.++ |-.-.|-.| ++|.|-.+....|..|++|++.. ++++.+.. ....+..+||+|||||.++..+
T Consensus 89 ~i~~~~~~--R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsl 166 (328)
T KOG2904|consen 89 SIRWACLQ--RYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSL 166 (328)
T ss_pred HHHHHHHH--HHhcCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHH
Confidence 44455444 444455553 68899999999999999997644 44444422 1224558999999999999999
Q ss_pred HHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969 616 GYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658 (687)
Q Consensus 616 ArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI 658 (687)
++.++ .++|+|+|.++.++..|.+|+.++++ .+++.++
T Consensus 167 l~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~v~ 204 (328)
T KOG2904|consen 167 LHGLP-QCTVTAIDVSKAAIKLAKENAQRLKL----SGRIEVI 204 (328)
T ss_pred HhcCC-CceEEEEeccHHHHHHHHHHHHHHhh----cCceEEE
Confidence 99985 88999999999999999999999987 5555555
No 86
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.52 E-value=5.2e-07 Score=96.21 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=65.3
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP- 663 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe- 663 (687)
..+++.+ ....+.+|||+|||+|.++..+++.. |.++|+++|+++.|++.|++|++.++... ..++.++.+|..
T Consensus 218 rllL~~l--p~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~~D~l~ 292 (378)
T PRK15001 218 RFFMQHL--PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALS 292 (378)
T ss_pred HHHHHhC--CcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCccc--CceEEEEEccccc
Confidence 4455555 22334699999999999999999886 67899999999999999999998876410 136788777743
Q ss_pred ---CCCccEEEEEecCCCc
Q psy14969 664 ---QQDASRVNISVEPQKS 679 (687)
Q Consensus 664 ---daPFDLILVVfAP~K~ 679 (687)
...||+|+.. .|...
T Consensus 293 ~~~~~~fDlIlsN-PPfh~ 310 (378)
T PRK15001 293 GVEPFRFNAVLCN-PPFHQ 310 (378)
T ss_pred cCCCCCEEEEEEC-cCccc
Confidence 2358877553 34343
No 87
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=6.9e-07 Score=95.12 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=65.6
Q ss_pred HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-
Q psy14969 586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ- 664 (687)
Q Consensus 586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed- 664 (687)
.+...+ .+.+|.+|||+|||+|..|..+++.++ .++|+|+|+++.+++.+++++++.++ .+.++.+|+..
T Consensus 235 ~~~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~ 305 (427)
T PRK10901 235 LAATLL--APQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDP 305 (427)
T ss_pred HHHHHc--CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccc
Confidence 334444 678899999999999999999999874 47999999999999999999999887 36778888743
Q ss_pred ------CCccEEEEEe
Q psy14969 665 ------QDASRVNISV 674 (687)
Q Consensus 665 ------aPFDLILVVf 674 (687)
.+||.|++..
T Consensus 306 ~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 306 AQWWDGQPFDRILLDA 321 (427)
T ss_pred hhhcccCCCCEEEECC
Confidence 3589886654
No 88
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.51 E-value=2.9e-07 Score=96.03 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRV 670 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLI 670 (687)
.++.+|||||||+|+++..|++.. ++|+|||+++.+++.|+.+....+. ..++.++.++++. ..||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHhhhccCCCCEE
Confidence 467799999999999999998753 5999999999999999988765543 3578888887543 358988
Q ss_pred EEE
Q psy14969 671 NIS 673 (687)
Q Consensus 671 LVV 673 (687)
+..
T Consensus 203 i~~ 205 (322)
T PLN02396 203 LSL 205 (322)
T ss_pred EEh
Confidence 764
No 89
>PLN02672 methionine S-methyltransferase
Probab=98.51 E-value=4.8e-07 Score=107.04 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=82.1
Q ss_pred CCCCCCCCccccCCcccCcHHHHHHHHHHhhhcCC---CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy14969 562 RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLK---PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFS 638 (687)
Q Consensus 562 yqAYsD~pLPIG~GqTISaP~VvAlLLElLkedLk---pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~A 638 (687)
++.+....+.++.|..|++|.+..++-. +..... ++.+|||||||||+++..+++.. +.++|+|+|+++.+++.|
T Consensus 81 ~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A 158 (1082)
T PLN02672 81 FRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVA 158 (1082)
T ss_pred eEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence 4566777888999999999988776544 421111 24689999999999999999987 467999999999999999
Q ss_pred HHHHHHcCCC---c--------cCCCcEEEEEcCCCC------CCccEEEE
Q psy14969 639 KENIRKNHAH---L--------LDEGVVNIMRTLPPQ------QDASRVNI 672 (687)
Q Consensus 639 RKNLKkaG~~---V--------aSsgRI~LI~GDAed------aPFDLILV 672 (687)
++|++.+++. + ....++.++.+|... .+||+|+.
T Consensus 159 ~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVS 209 (1082)
T PLN02672 159 WINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVG 209 (1082)
T ss_pred HHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEE
Confidence 9999986531 0 012478999998542 24786644
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=98.49 E-value=1.4e-06 Score=79.61 Aligned_cols=71 Identities=31% Similarity=0.334 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc-EEEEEcCCCC----CCccE
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV-VNIMRTLPPQ----QDASR 669 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR-I~LI~GDAed----aPFDL 669 (687)
..++.+|||+|||+|+++..++... ++|+|+|+++.+++.|++++...+. ..+ +.++.+|... ..||+
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~d~ 93 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNI----RNNGVEVIRSDLFEPFRGDKFDV 93 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEeccccccccccCceE
Confidence 4678899999999999999999873 5899999999999999999988775 222 6777766432 25887
Q ss_pred EEE
Q psy14969 670 VNI 672 (687)
Q Consensus 670 ILV 672 (687)
|+.
T Consensus 94 vi~ 96 (188)
T PRK14968 94 ILF 96 (188)
T ss_pred EEE
Confidence 764
No 91
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.49 E-value=8.2e-07 Score=86.91 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=63.4
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
+...++..+. ...++.+|||+|||+|++++.++.... ++|+++|+++.+++.|++|++.+++ .++.++.+|.
T Consensus 40 v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~~D~ 111 (199)
T PRK10909 40 VRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKA-----GNARVVNTNA 111 (199)
T ss_pred HHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEchH
Confidence 4444555442 234678999999999999985433332 4899999999999999999999886 3688888875
Q ss_pred CC------CCccEEEEEecCC-CcC
Q psy14969 663 PQ------QDASRVNISVEPQ-KSG 680 (687)
Q Consensus 663 ed------aPFDLILVVfAP~-K~g 680 (687)
.. .+||+| .+.|+ +.+
T Consensus 112 ~~~l~~~~~~fDlV--~~DPPy~~g 134 (199)
T PRK10909 112 LSFLAQPGTPHNVV--FVDPPFRKG 134 (199)
T ss_pred HHHHhhcCCCceEE--EECCCCCCC
Confidence 32 257765 45566 443
No 92
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.47 E-value=1.3e-06 Score=88.01 Aligned_cols=83 Identities=22% Similarity=0.174 Sum_probs=67.6
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
...+++.+ .+.++.+|||||||+|.++..+++.. |.++++++|. +.+++.|++++.+.++ .+++.++.+|..
T Consensus 138 ~~~l~~~~--~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~ 209 (306)
T TIGR02716 138 IQLLLEEA--KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIY 209 (306)
T ss_pred HHHHHHHc--CCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCcc
Confidence 34455555 56788999999999999999999997 6889999997 7999999999999987 678999999964
Q ss_pred C---CCccEEEEEe
Q psy14969 664 Q---QDASRVNISV 674 (687)
Q Consensus 664 d---aPFDLILVVf 674 (687)
. .++|+|++..
T Consensus 210 ~~~~~~~D~v~~~~ 223 (306)
T TIGR02716 210 KESYPEADAVLFCR 223 (306)
T ss_pred CCCCCCCCEEEeEh
Confidence 3 2368776543
No 93
>PRK06202 hypothetical protein; Provisional
Probab=98.47 E-value=9.5e-07 Score=85.45 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC---CCCCCcc
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL---PPQQDAS 668 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLV---GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD---AedaPFD 668 (687)
..++.+|||||||+|.++..|++.+ ++..+|+|+|+++.|++.|+++....++ ++....++ .....||
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~~l~~~~~~fD 131 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV------TFRQAVSDELVAEGERFD 131 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC------eEEEEecccccccCCCcc
Confidence 3567899999999999999988754 3446999999999999999988655443 12222111 1235699
Q ss_pred EEEEEe
Q psy14969 669 RVNISV 674 (687)
Q Consensus 669 LILVVf 674 (687)
+|+...
T Consensus 132 ~V~~~~ 137 (232)
T PRK06202 132 VVTSNH 137 (232)
T ss_pred EEEECC
Confidence 888864
No 94
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.46 E-value=1.1e-06 Score=90.26 Aligned_cols=85 Identities=21% Similarity=0.192 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI 658 (687)
..|.+.+.++..+ .+++|.+|||+|||||.++..++... +.|+|+|+++.|++.|+.|++..++ .+ +.++
T Consensus 166 l~~~la~~~~~l~--~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~----~~-i~~~ 235 (329)
T TIGR01177 166 MDPKLARAMVNLA--RVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGI----ED-FFVK 235 (329)
T ss_pred CCHHHHHHHHHHh--CCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCC----CC-CeEE
Confidence 4566777777665 67889999999999999988876653 4899999999999999999999887 33 7788
Q ss_pred EcCCCCC-----CccEEEEE
Q psy14969 659 RTLPPQQ-----DASRVNIS 673 (687)
Q Consensus 659 ~GDAeda-----PFDLILVV 673 (687)
.+|+... .||.|+..
T Consensus 236 ~~D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 236 RGDATKLPLSSESVDAIATD 255 (329)
T ss_pred ecchhcCCcccCCCCEEEEC
Confidence 8887654 46766543
No 95
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.46 E-value=8.5e-07 Score=93.23 Aligned_cols=75 Identities=11% Similarity=0.066 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCccE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDASR 669 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPFDL 669 (687)
.++.+|||+|||+|.+++.+|... .+|+|||+++.+++.|++|++.+++ .++.++.+++.. .+||+
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~-----~~~~~~~~d~~~~~~~~~~~~D~ 303 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGL-----DNLSFAALDSAKFATAQMSAPEL 303 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHHHHhcCCCCCE
Confidence 356899999999999999998654 4899999999999999999999986 378999988642 24775
Q ss_pred EEEEecCCCcC
Q psy14969 670 VNISVEPQKSG 680 (687)
Q Consensus 670 ILVVfAP~K~g 680 (687)
| ++.|++.|
T Consensus 304 v--i~DPPr~G 312 (374)
T TIGR02085 304 V--LVNPPRRG 312 (374)
T ss_pred E--EECCCCCC
Confidence 4 45688876
No 96
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.45 E-value=1.5e-06 Score=90.44 Aligned_cols=89 Identities=19% Similarity=0.055 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhc-CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969 582 SFIASSLEPALLK-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT 660 (687)
Q Consensus 582 ~VvAlLLElLked-LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G 660 (687)
.++..++..+... ..++.+|||||||+|.++..+++.. .+|+|+|+++.|++.|+++++..+.......++.+..+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 3455556555221 1257899999999999999999863 48999999999999999998875321011235677777
Q ss_pred CCC--CCCccEEEEE
Q psy14969 661 LPP--QQDASRVNIS 673 (687)
Q Consensus 661 DAe--daPFDLILVV 673 (687)
|.+ ...||+|+..
T Consensus 205 Dl~~l~~~fD~Vv~~ 219 (315)
T PLN02585 205 DLESLSGKYDTVTCL 219 (315)
T ss_pred chhhcCCCcCEEEEc
Confidence 754 3569988754
No 97
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.45 E-value=6e-07 Score=72.16 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=49.6
Q ss_pred EEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----ccEEEEEe
Q psy14969 602 LDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----ASRVNISV 674 (687)
Q Consensus 602 LDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FDLILVVf 674 (687)
||||||+|..+..+++. +..+|+++|+++++++.|+++....+ +.+..++...+| ||.|+...
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~~~l~~~~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDAEDLPFPDNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBTTSSSS-TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC--------chheeehHHhCcccccccccccccc
Confidence 89999999999999998 35699999999999999999877654 347777776554 67776653
No 98
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.45 E-value=9.3e-07 Score=93.99 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=62.0
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
...+++.+ .+.++.+|||||||+|..+..+++..+ ++|+|+|+++.+++.|+++..... .++.+..+|..
T Consensus 255 te~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~------~~v~~~~~d~~ 324 (475)
T PLN02336 255 TKEFVDKL--DLKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK------CSVEFEVADCT 324 (475)
T ss_pred HHHHHHhc--CCCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC------CceEEEEcCcc
Confidence 34455555 467788999999999999999998753 589999999999999998875432 36888888754
Q ss_pred C-----CCccEEEEE
Q psy14969 664 Q-----QDASRVNIS 673 (687)
Q Consensus 664 d-----aPFDLILVV 673 (687)
. ..||+|+..
T Consensus 325 ~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 325 KKTYPDNSFDVIYSR 339 (475)
T ss_pred cCCCCCCCEEEEEEC
Confidence 3 348888764
No 99
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.44 E-value=1.1e-06 Score=92.25 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=60.4
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC--
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-- 662 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-- 662 (687)
..+++.+ ......+|||+|||+|+++..+++.. |..+|+++|+++.|++.|+++++.+++ ...++.+|.
T Consensus 186 ~lLl~~l--~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~ 256 (342)
T PRK09489 186 QLLLSTL--TPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFS 256 (342)
T ss_pred HHHHHhc--cccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEccccc
Confidence 4445544 22335689999999999999999886 567999999999999999999999886 224444442
Q ss_pred -CCCCccEEEEE
Q psy14969 663 -PQQDASRVNIS 673 (687)
Q Consensus 663 -edaPFDLILVV 673 (687)
...+||+|+..
T Consensus 257 ~~~~~fDlIvsN 268 (342)
T PRK09489 257 DIKGRFDMIISN 268 (342)
T ss_pred ccCCCccEEEEC
Confidence 23569988664
No 100
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.44 E-value=7e-07 Score=91.14 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
+-+.++.... .+....+|||+|||+|.++.++|+... ..+|+|||+++.|++.|+++++.+++ ..++.++++|.
T Consensus 31 ~DaiLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di 104 (248)
T COG4123 31 TDAILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADI 104 (248)
T ss_pred cHHHHHHhhc-ccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhH
Confidence 4444544443 344578999999999999999999974 58999999999999999999999998 89999999995
Q ss_pred CC-------CCccEEEEE
Q psy14969 663 PQ-------QDASRVNIS 673 (687)
Q Consensus 663 ed-------aPFDLILVV 673 (687)
.. ..||+|++.
T Consensus 105 ~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 105 KEFLKALVFASFDLIICN 122 (248)
T ss_pred HHhhhcccccccCEEEeC
Confidence 42 236766443
No 101
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.44 E-value=1.1e-06 Score=88.08 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=61.5
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
...++..+ .+.++.+|||||||+|..+..+++.. .++|+|+|+++.+++.|+++... ..++.+..+|..
T Consensus 41 ~~~~l~~l--~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~ 109 (263)
T PTZ00098 41 TTKILSDI--ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDIL 109 (263)
T ss_pred HHHHHHhC--CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcc
Confidence 34455555 67889999999999999999998764 36999999999999999988654 236788887754
Q ss_pred C-----CCccEEEEE
Q psy14969 664 Q-----QDASRVNIS 673 (687)
Q Consensus 664 d-----aPFDLILVV 673 (687)
. ..||+|+..
T Consensus 110 ~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 110 KKDFPENTFDMIYSR 124 (263)
T ss_pred cCCCCCCCeEEEEEh
Confidence 3 458888763
No 102
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.44 E-value=3.7e-07 Score=88.87 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
+...+++.+ ...++.+|||||||+|.++..+++.. .+|+|+|+++.|++.|+++.... .++.+|.
T Consensus 30 ~a~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~----------~~~~~d~ 94 (251)
T PRK10258 30 SADALLAML--PQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAAD----------HYLAGDI 94 (251)
T ss_pred HHHHHHHhc--CccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCC----------CEEEcCc
Confidence 444555554 23456899999999999999988653 48999999999999998874321 3344554
Q ss_pred CC-----CCccEEEEEe
Q psy14969 663 PQ-----QDASRVNISV 674 (687)
Q Consensus 663 ed-----aPFDLILVVf 674 (687)
.. ..||+|+...
T Consensus 95 ~~~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 95 ESLPLATATFDLAWSNL 111 (251)
T ss_pred ccCcCCCCcEEEEEECc
Confidence 32 3488876543
No 103
>KOG0820|consensus
Probab=98.43 E-value=8.7e-07 Score=92.44 Aligned_cols=89 Identities=22% Similarity=0.276 Sum_probs=78.1
Q ss_pred CccccCCccc-CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 569 SVMLENCSYL-NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 569 pLPIG~GqTI-SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
.+..+.|++| ..|.+.+.+++.. .+++++.|||||.|||.+|..|.+++. +|+|+|+++.|+..-.++.+....
T Consensus 31 kfnkd~GQHilkNp~v~~~I~~ka--~~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~ 105 (315)
T KOG0820|consen 31 KFNKDFGQHILKNPLVIDQIVEKA--DLKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPK 105 (315)
T ss_pred ccccccchhhhcCHHHHHHHHhcc--CCCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCc
Confidence 3445677776 6788999998887 899999999999999999999998875 899999999999999999988876
Q ss_pred CccCCCcEEEEEcCCCCCC
Q psy14969 648 HLLDEGVVNIMRTLPPQQD 666 (687)
Q Consensus 648 ~VaSsgRI~LI~GDAedaP 666 (687)
++++.+++||.-..+
T Consensus 106 ----~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 106 ----SGKLQVLHGDFLKTD 120 (315)
T ss_pred ----cceeeEEecccccCC
Confidence 789999999987655
No 104
>PLN03075 nicotianamine synthase; Provisional
Probab=98.42 E-value=1.8e-06 Score=89.94 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCcc-HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCccCCCcEEEEEcCCCC-----CCcc
Q psy14969 596 KPGDTVLDVGTGSG-YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK-NHAHLLDEGVVNIMRTLPPQ-----QDAS 668 (687)
Q Consensus 596 kpG~RVLDIGCGTG-YLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk-aG~~VaSsgRI~LI~GDAed-----aPFD 668 (687)
.++.+|+|||||.| +.+..+++...|+++++|+|+++++++.|++.++. .++ ..++.|..+|+.+ .+||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL----~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL----SKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc----cCCcEEEECchhhcccccCCcC
Confidence 37789999999955 55566665555789999999999999999999965 676 6789999988642 5799
Q ss_pred EEEEEe
Q psy14969 669 RVNISV 674 (687)
Q Consensus 669 LILVVf 674 (687)
+|++-+
T Consensus 198 lVF~~A 203 (296)
T PLN03075 198 VVFLAA 203 (296)
T ss_pred EEEEec
Confidence 998873
No 105
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.40 E-value=1.7e-06 Score=90.58 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=51.3
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
+.+|||+|||+|.++..+++.+. +|+|+|+++.|++.|++|++.+++ .++.++.+++.
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~d~~ 255 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRMSAE 255 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEcCHH
Confidence 34799999999999999998864 899999999999999999999987 36888888854
No 106
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.38 E-value=2.1e-06 Score=91.04 Aligned_cols=77 Identities=21% Similarity=0.117 Sum_probs=59.7
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
..+++.+ .+++|.+|||||||+|.++..+++..+ ++|+|+|+++++++.|+++++. . .+.+..++...
T Consensus 157 ~~l~~~l--~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~--l------~v~~~~~D~~~ 224 (383)
T PRK11705 157 DLICRKL--QLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG--L------PVEIRLQDYRD 224 (383)
T ss_pred HHHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc--C------eEEEEECchhh
Confidence 3444544 678999999999999999999998753 5899999999999999998743 2 35666666543
Q ss_pred --CCccEEEEE
Q psy14969 665 --QDASRVNIS 673 (687)
Q Consensus 665 --aPFDLILVV 673 (687)
..||.|+..
T Consensus 225 l~~~fD~Ivs~ 235 (383)
T PRK11705 225 LNGQFDRIVSV 235 (383)
T ss_pred cCCCCCEEEEe
Confidence 469988654
No 107
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.37 E-value=1.8e-06 Score=80.84 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=58.1
Q ss_pred HHHHHHHHhhhc-CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969 583 FIASSLEPALLK-LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL 661 (687)
Q Consensus 583 VvAlLLElLked-LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD 661 (687)
+...+++.+... ...+.+|||||||+|+.+..+++.. +..+|+++|+++.+++.|++++.. ++.++.++
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d 88 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSE---------NVQFICGD 88 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCC---------CCeEEecc
Confidence 344444444211 1345799999999999999999886 577899999999999999886541 45666666
Q ss_pred CCC-----CCccEEEEE
Q psy14969 662 PPQ-----QDASRVNIS 673 (687)
Q Consensus 662 Aed-----aPFDLILVV 673 (687)
... ..||+|+..
T Consensus 89 ~~~~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 89 AEKLPLEDSSFDLIVSN 105 (240)
T ss_pred hhhCCCCCCceeEEEEh
Confidence 543 347887764
No 108
>KOG1540|consensus
Probab=98.37 E-value=1.5e-06 Score=90.21 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=63.3
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCC-----cEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCCcc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPH-----GKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDAS 668 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~-----GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaPFD 668 (687)
.+..++++|||++|||.+|..+.+.+..+ ++|+.+|++|+|++.|+++.++.++ ....++.++.|||+++|||
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL--KASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcCCceEEEeCCcccCCCC
Confidence 66778999999999999999999988632 8999999999999999999988665 3345699999999998864
No 109
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.37 E-value=1.8e-06 Score=90.50 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=51.6
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
+.+|||++||+|.++..+++.+. +|+|||+++.+++.|++|++.+++ .++.++.+|+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~d~~ 264 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGI-----DNVQIIRMSAE 264 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEECCHH
Confidence 35799999999999999998864 899999999999999999999887 37888888864
No 110
>PRK05785 hypothetical protein; Provisional
Probab=98.36 E-value=7.6e-07 Score=87.49 Aligned_cols=66 Identities=18% Similarity=0.085 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccEE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASRV 670 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDLI 670 (687)
.++.+|||||||||.++..+++.. .++|+|+|++++|++.|+++. .++++++.. ..||+|
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~~d~sfD~v 114 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPFRDKSFDVV 114 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCCCCCCEEEE
Confidence 457899999999999999999875 259999999999999998641 123444433 348988
Q ss_pred EEEecC
Q psy14969 671 NISVEP 676 (687)
Q Consensus 671 LVVfAP 676 (687)
+..+.-
T Consensus 115 ~~~~~l 120 (226)
T PRK05785 115 MSSFAL 120 (226)
T ss_pred EecChh
Confidence 887643
No 111
>PTZ00146 fibrillarin; Provisional
Probab=98.36 E-value=1.7e-06 Score=90.10 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=61.8
Q ss_pred HHHHHHHHhhh-cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969 583 FIASSLEPALL-KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL 661 (687)
Q Consensus 583 VvAlLLElLke-dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD 661 (687)
+.|.++.-+.. .++++++|||+|||+|+.|..+|..+++.++|+|+|+++.|.+...+..+.. .++.++.+|
T Consensus 117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-------~NI~~I~~D 189 (293)
T PTZ00146 117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-------PNIVPIIED 189 (293)
T ss_pred HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCCEEEECC
Confidence 45454333321 5789999999999999999999999988899999999987554333332221 245556666
Q ss_pred CCC--------CCccEEEEEecCCC
Q psy14969 662 PPQ--------QDASRVNISVEPQK 678 (687)
Q Consensus 662 Aed--------aPFDLILVVfAP~K 678 (687)
+.. ..+|+|+..++.+.
T Consensus 190 a~~p~~y~~~~~~vDvV~~Dva~pd 214 (293)
T PTZ00146 190 ARYPQKYRMLVPMVDVIFADVAQPD 214 (293)
T ss_pred ccChhhhhcccCCCCEEEEeCCCcc
Confidence 532 23799998876543
No 112
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.34 E-value=2.7e-06 Score=88.13 Aligned_cols=80 Identities=19% Similarity=0.079 Sum_probs=56.6
Q ss_pred HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC
Q psy14969 586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ 665 (687)
Q Consensus 586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda 665 (687)
.++..+ ....|.+|||||||+|+++..++.... ..|+|+|+++.++..++......+. ..++.++.++....
T Consensus 113 ~l~~~l--~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i~~~~~d~e~l 184 (322)
T PRK15068 113 RVLPHL--SPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGN----DQRAHLLPLGIEQL 184 (322)
T ss_pred HHHHhh--CCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEeCCHHHC
Confidence 334444 345688999999999999999998743 3799999999998765544333221 23678887775543
Q ss_pred ----CccEEEEE
Q psy14969 666 ----DASRVNIS 673 (687)
Q Consensus 666 ----PFDLILVV 673 (687)
.||+|+..
T Consensus 185 p~~~~FD~V~s~ 196 (322)
T PRK15068 185 PALKAFDTVFSM 196 (322)
T ss_pred CCcCCcCEEEEC
Confidence 47888764
No 113
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.34 E-value=4.2e-06 Score=78.03 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=60.9
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
..+++.+ ...++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++. . ..++.++.++...
T Consensus 29 ~~~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~------~~~i~~~~~d~~~ 99 (223)
T TIGR01934 29 RRAVKLI--GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L------PLNIEFIQADAEA 99 (223)
T ss_pred HHHHHHh--ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c------CCCceEEecchhc
Confidence 3344444 34578899999999999999999887533799999999999999999876 2 2356777777543
Q ss_pred -----CCccEEEEEe
Q psy14969 665 -----QDASRVNISV 674 (687)
Q Consensus 665 -----aPFDLILVVf 674 (687)
.+||+|+..+
T Consensus 100 ~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 100 LPFEDNSFDAVTIAF 114 (223)
T ss_pred CCCCCCcEEEEEEee
Confidence 3588876654
No 114
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.34 E-value=6.5e-07 Score=91.32 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVN 671 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLIL 671 (687)
+|.+|||||||-|.++..||++.. .|+|+|+++.+++.|+....+.++ .+++.....+ ..+||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhcCCCccEEE
Confidence 789999999999999999999864 999999999999999999999887 3444433322 15799887
Q ss_pred E
Q psy14969 672 I 672 (687)
Q Consensus 672 V 672 (687)
.
T Consensus 130 c 130 (243)
T COG2227 130 C 130 (243)
T ss_pred E
Confidence 6
No 115
>KOG1663|consensus
Probab=98.34 E-value=2.3e-06 Score=87.07 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=70.0
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----------
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------- 663 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------- 663 (687)
.+..++++||||+-|||.+..+|.+++++|+|+++|++++..+.+.+.++.++. .++|++++|.+.
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALESLDELLADG 145 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhhhHHHHHhcC
Confidence 344789999999999999999999999899999999999999999999999998 899999999864
Q ss_pred -CCCccEEEEEec
Q psy14969 664 -QQDASRVNISVE 675 (687)
Q Consensus 664 -daPFDLILVVfA 675 (687)
...||.+++.++
T Consensus 146 ~~~tfDfaFvDad 158 (237)
T KOG1663|consen 146 ESGTFDFAFVDAD 158 (237)
T ss_pred CCCceeEEEEccc
Confidence 356898888764
No 116
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.34 E-value=1.1e-07 Score=79.73 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=46.0
Q ss_pred EEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEEEe
Q psy14969 602 LDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNISV 674 (687)
Q Consensus 602 LDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILVVf 674 (687)
||||||+|.++..++... |.++++|+|+|+.|++.|++++...... ...++.+...+... ..||.|+...
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhcccccccceehhhh
Confidence 799999999999999887 5789999999999999999999987640 01123333333221 3799998764
No 117
>KOG1270|consensus
Probab=98.33 E-value=7.4e-07 Score=92.28 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CccCCCcEEEEEcCCC--CCCccEEEE
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA--HLLDEGVVNIMRTLPP--QQDASRVNI 672 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~--~VaSsgRI~LI~GDAe--daPFDLILV 672 (687)
|++|||||||+|.++..||++.. .|+|||++++|++.|+.. +.... ......++.+.+.+++ ...||.|++
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcccccceeee
Confidence 58899999999999999999975 999999999999999999 44433 1112346888877766 355998876
No 118
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.32 E-value=5.2e-06 Score=81.67 Aligned_cols=84 Identities=17% Similarity=0.061 Sum_probs=57.7
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCc---------
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL--------- 649 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~V--------- 649 (687)
+.|.+...+.. + .+.++.+|||+|||+|..+..||+..- .|+|+|+|+.+++.|.+ ++++..
T Consensus 19 p~~~l~~~~~~-l--~~~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~ 89 (213)
T TIGR03840 19 VNPLLVKHWPA-L--GLPAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFT 89 (213)
T ss_pred CCHHHHHHHHh-h--CCCCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHH---HcCCCcceeccccce
Confidence 34445554332 2 235778999999999999999998753 89999999999998644 222210
Q ss_pred -cCCCcEEEEEcCCCCC------CccEEE
Q psy14969 650 -LDEGVVNIMRTLPPQQ------DASRVN 671 (687)
Q Consensus 650 -aSsgRI~LI~GDAeda------PFDLIL 671 (687)
....+++++++|.... +||.|+
T Consensus 90 ~~~~~~v~~~~~D~~~~~~~~~~~fD~i~ 118 (213)
T TIGR03840 90 RYRAGNIEIFCGDFFALTAADLGPVDAVY 118 (213)
T ss_pred eeecCceEEEEccCCCCCcccCCCcCEEE
Confidence 1135789999887543 367665
No 119
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.31 E-value=1.5e-06 Score=91.05 Aligned_cols=87 Identities=24% Similarity=0.285 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
+...+++++ ...++ .|||+-||+|.+|..||..+. +|+|||+++.+++.|++|++.+++ .++.|+.+++
T Consensus 185 l~~~~~~~l--~~~~~-~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i-----~n~~f~~~~~ 253 (352)
T PF05958_consen 185 LYEQALEWL--DLSKG-DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGI-----DNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHC--TT-TT-EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--S
T ss_pred HHHHHHHHh--hcCCC-cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCC-----CcceEEEeec
Confidence 445555554 34444 899999999999999998876 899999999999999999999997 5789988765
Q ss_pred CCC-------------------CccEEEEEecCCCcC
Q psy14969 663 PQQ-------------------DASRVNISVEPQKSG 680 (687)
Q Consensus 663 eda-------------------PFDLILVVfAP~K~g 680 (687)
++. .++.-.++++||+.|
T Consensus 254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G 290 (352)
T PF05958_consen 254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAG 290 (352)
T ss_dssp HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-
T ss_pred cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCC
Confidence 421 122334578999987
No 120
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.30 E-value=4e-06 Score=90.27 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCc
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDA 667 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPF 667 (687)
...+..+||||||+|..+..+|+.. |...++|+|+++.+++.|.+++...++ .++.++.+|+. ...+
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL-----~NV~~i~~DA~~ll~~~~~~s~ 193 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL-----KNLLIINYDARLLLELLPSNSV 193 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHhhhhCCCCce
Confidence 4456799999999999999999997 688999999999999999999999886 56899999974 3458
Q ss_pred cEEEEEe
Q psy14969 668 SRVNISV 674 (687)
Q Consensus 668 DLILVVf 674 (687)
|.|.+.+
T Consensus 194 D~I~lnF 200 (390)
T PRK14121 194 EKIFVHF 200 (390)
T ss_pred eEEEEeC
Confidence 8888776
No 121
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.28 E-value=4.4e-06 Score=82.26 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=57.6
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
+..+++++ ...++.++||+|||+|..|..||+..- .|+|+|+++.+++.+++..++.++ .|.....|..
T Consensus 19 hs~v~~a~--~~~~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l------~i~~~~~Dl~ 87 (192)
T PF03848_consen 19 HSEVLEAV--PLLKPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGL------DIRTRVADLN 87 (192)
T ss_dssp -HHHHHHC--TTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGC
T ss_pred cHHHHHHH--hhcCCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCc------eeEEEEecch
Confidence 44455555 344667999999999999999998864 899999999999999998888887 4666666633
Q ss_pred ----CCCccEEEEE
Q psy14969 664 ----QQDASRVNIS 673 (687)
Q Consensus 664 ----daPFDLILVV 673 (687)
...||+|+.+
T Consensus 88 ~~~~~~~yD~I~st 101 (192)
T PF03848_consen 88 DFDFPEEYDFIVST 101 (192)
T ss_dssp CBS-TTTEEEEEEE
T ss_pred hccccCCcCEEEEE
Confidence 2458888653
No 122
>PRK00811 spermidine synthase; Provisional
Probab=98.28 E-value=4.4e-06 Score=84.94 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR 669 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL 669 (687)
..+.+||+||||+|+.+..+++.. +..+|++||+++.+++.|++++...+.......++.++.+|+. ...||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 457899999999999999888763 2458999999999999999998865432234578999999964 357999
Q ss_pred EEEEec
Q psy14969 670 VNISVE 675 (687)
Q Consensus 670 ILVVfA 675 (687)
|++...
T Consensus 154 Ii~D~~ 159 (283)
T PRK00811 154 IIVDST 159 (283)
T ss_pred EEECCC
Confidence 988753
No 123
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=4.8e-06 Score=87.22 Aligned_cols=87 Identities=24% Similarity=0.285 Sum_probs=64.4
Q ss_pred HHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC--
Q psy14969 585 ASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-- 662 (687)
Q Consensus 585 AlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-- 662 (687)
..+++.+ ....+.+|||+|||.|++++.+++.. |..+|+-+|++..+++.|++|++.+++ .+. .+..++.
T Consensus 148 ~lLl~~l--~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~----~~~-~v~~s~~~~ 219 (300)
T COG2813 148 RLLLETL--PPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV----ENT-EVWASNLYE 219 (300)
T ss_pred HHHHHhC--CccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC----Ccc-EEEEecccc
Confidence 4555555 34445599999999999999999997 588999999999999999999999987 221 3333332
Q ss_pred -CCCCccEEEEEecCCCcC
Q psy14969 663 -PQQDASRVNISVEPQKSG 680 (687)
Q Consensus 663 -edaPFDLILVVfAP~K~g 680 (687)
-...||.| ++.-|.+.|
T Consensus 220 ~v~~kfd~I-isNPPfh~G 237 (300)
T COG2813 220 PVEGKFDLI-ISNPPFHAG 237 (300)
T ss_pred cccccccEE-EeCCCccCC
Confidence 12368877 455565544
No 124
>PRK06922 hypothetical protein; Provisional
Probab=98.27 E-value=3e-06 Score=96.34 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------CCc
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------QDA 667 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------aPF 667 (687)
..++.+|||||||+|..+..+++.. |.++|+|+|+++.|++.|+++....+. ++.++.+|+.. .+|
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~------~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR------SWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC------CeEEEEcchHhCccccCCCCE
Confidence 4478899999999999999999876 578999999999999999998766543 56777777533 358
Q ss_pred cEEEEE
Q psy14969 668 SRVNIS 673 (687)
Q Consensus 668 DLILVV 673 (687)
|+|+..
T Consensus 489 DvVVsn 494 (677)
T PRK06922 489 DTIVYS 494 (677)
T ss_pred EEEEEc
Confidence 887654
No 125
>KOG2915|consensus
Probab=98.24 E-value=4.2e-06 Score=87.46 Aligned_cols=97 Identities=24% Similarity=0.310 Sum_probs=80.9
Q ss_pred cccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCcc
Q psy14969 571 MLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650 (687)
Q Consensus 571 PIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~Va 650 (687)
.+.++..|..+.-.++++..| ++.||.+|||-|+|+|.++.++++.++|.|+++..|+.....+.|.+.+++.++
T Consensus 81 ~LphRTQI~Yt~Dia~I~~~L--~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--- 155 (314)
T KOG2915|consen 81 ALPHRTQILYTPDIAMILSML--EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--- 155 (314)
T ss_pred hccCcceEEecccHHHHHHHh--cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC---
Confidence 344445566666678888888 799999999999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEcCCCC-------CCccEEEEE
Q psy14969 651 DEGVVNIMRTLPPQ-------QDASRVNIS 673 (687)
Q Consensus 651 SsgRI~LI~GDAed-------aPFDLILVV 673 (687)
.+.+++.+-|... .-+|.|++.
T Consensus 156 -~~~vt~~hrDVc~~GF~~ks~~aDaVFLD 184 (314)
T KOG2915|consen 156 -GDNVTVTHRDVCGSGFLIKSLKADAVFLD 184 (314)
T ss_pred -CcceEEEEeecccCCccccccccceEEEc
Confidence 7788888776543 345666655
No 126
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.24 E-value=5.1e-06 Score=87.21 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCccCCCcEEEEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-HAHLLDEGVVNIMR 659 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-G~~VaSsgRI~LI~ 659 (687)
.+.+|||||||+|.+...|+... +..+++|+|+++.+++.|+++++.+ ++ .+++.+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~ 172 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRL 172 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEE
Confidence 45799999999999998888775 4689999999999999999999999 67 56777754
No 127
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.23 E-value=6.1e-06 Score=86.10 Aligned_cols=74 Identities=16% Similarity=0.030 Sum_probs=51.4
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccE
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASR 669 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDL 669 (687)
...+|++|||||||+|+++..++... + ..|+|||+++.|+..++..-+..+. ..++.+..++.+ ...||.
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~~~~~~ie~lp~~~~FD~ 191 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEAVRKLLDN----DKRAILEPLGIEQLHELYAFDT 191 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHHhcc----CCCeEEEECCHHHCCCCCCcCE
Confidence 45678999999999999998888764 2 3799999999998765433222221 235556555433 236898
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
|+..
T Consensus 192 V~s~ 195 (314)
T TIGR00452 192 VFSM 195 (314)
T ss_pred EEEc
Confidence 8765
No 128
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.23 E-value=5.6e-06 Score=84.43 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=53.0
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+.++.+|||+|||||..|..|++.+.+..+|+|+|+|++|++.|++++..... .-++.++.||..
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~ 125 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFT 125 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEccc
Confidence 356778999999999999999998863246899999999999999999876432 225677778754
No 129
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.20 E-value=6.1e-06 Score=88.34 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC-CcEEEEEcCCCC---------C
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE-GVVNIMRTLPPQ---------Q 665 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs-gRI~LI~GDAed---------a 665 (687)
.+|.+|||+|||||+++..++.. + ..+|+++|+++.+++.|++|++.+++ . .++.++.+|+.. .
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl----~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKL----DLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCC----CCCcEEEEEccHHHHHHHHHhcCC
Confidence 36889999999999998765533 2 45899999999999999999999987 3 478999998642 3
Q ss_pred CccEEEEEecCCC
Q psy14969 666 DASRVNISVEPQK 678 (687)
Q Consensus 666 PFDLILVVfAP~K 678 (687)
.||+|+ ..|+.
T Consensus 293 ~fDlVi--lDPP~ 303 (396)
T PRK15128 293 KFDVIV--MDPPK 303 (396)
T ss_pred CCCEEE--ECCCC
Confidence 699886 44553
No 130
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=4.8e-06 Score=90.33 Aligned_cols=89 Identities=24% Similarity=0.274 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969 582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL 661 (687)
Q Consensus 582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD 661 (687)
.|...+++++ ...++++|||+=||.|.++..||+.+. +|+|+|+++++++.|++|++.+++ .++.|+.++
T Consensus 280 kl~~~a~~~~--~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i-----~N~~f~~~~ 349 (432)
T COG2265 280 KLYETALEWL--ELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGI-----DNVEFIAGD 349 (432)
T ss_pred HHHHHHHHHH--hhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEeCC
Confidence 3555555555 456778999999999999999997775 999999999999999999999998 459999999
Q ss_pred CCC--------CCccEEEEEecCCCcCcc
Q psy14969 662 PPQ--------QDASRVNISVEPQKSGEI 682 (687)
Q Consensus 662 Aed--------aPFDLILVVfAP~K~gEl 682 (687)
++. ..+|. ++++|++.|--
T Consensus 350 ae~~~~~~~~~~~~d~--VvvDPPR~G~~ 376 (432)
T COG2265 350 AEEFTPAWWEGYKPDV--VVVDPPRAGAD 376 (432)
T ss_pred HHHHhhhccccCCCCE--EEECCCCCCCC
Confidence 763 23454 56789998854
No 131
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.19 E-value=9.8e-06 Score=77.83 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=55.7
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDA 667 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPF 667 (687)
...++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++++...+. .+.+..++.. ...|
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGL------KIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCC------ceEEEecCHHHhhhhcCCCc
Confidence 35578899999999999999988764 4899999999999999999887664 4556555532 2468
Q ss_pred cEEEEE
Q psy14969 668 SRVNIS 673 (687)
Q Consensus 668 DLILVV 673 (687)
|+|+..
T Consensus 116 D~Ii~~ 121 (233)
T PRK05134 116 DVVTCM 121 (233)
T ss_pred cEEEEh
Confidence 988663
No 132
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.17 E-value=5e-06 Score=94.23 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCC-CcEEEEEcCCC------CCCccE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDE-GVVNIMRTLPP------QQDASR 669 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSs-gRI~LI~GDAe------daPFDL 669 (687)
+|.+|||+|||||.++..+++.. ..+|++||+++.+++.|++|++.+++ . .++.++.+|+. ..+||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~----~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGL----SGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCC----CccceEEEEccHHHHHHHcCCCcCE
Confidence 68899999999999999999753 24799999999999999999999987 3 57999999963 247998
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
|++.
T Consensus 612 IilD 615 (702)
T PRK11783 612 IFID 615 (702)
T ss_pred EEEC
Confidence 7665
No 133
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.17 E-value=4.9e-06 Score=81.13 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----------
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---------- 664 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---------- 664 (687)
++++.+|||||||||..+..+++.+++.++|+|||+++ | ..+ ..+.++++|...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-----~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-----VGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-----CCcEEEecCCCChHHHHHHHHH
Confidence 57889999999999999999999987778999999998 1 111 246777777654
Q ss_pred ---CCccEEEEEecCCCcC
Q psy14969 665 ---QDASRVNISVEPQKSG 680 (687)
Q Consensus 665 ---aPFDLILVVfAP~K~g 680 (687)
..+|+|+...+|.-.+
T Consensus 113 ~~~~~~D~V~S~~~~~~~g 131 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSG 131 (209)
T ss_pred hCCCCCCEEecCCCCccCC
Confidence 2589998877665443
No 134
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=8.4e-06 Score=83.81 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=68.0
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEE
Q psy14969 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI 657 (687)
Q Consensus 578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~L 657 (687)
+..+.+...+++.+ .+.+++.|||||+|.|.+|..|++.+. +|++||+++.+++..++.... .+++.+
T Consensus 13 L~d~~v~~kIv~~a--~~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~v 80 (259)
T COG0030 13 LIDKNVIDKIVEAA--NISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLTV 80 (259)
T ss_pred ccCHHHHHHHHHhc--CCCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceEE
Confidence 34566788888887 688899999999999999999999986 899999999999998887662 368999
Q ss_pred EEcCCCCCCcc
Q psy14969 658 MRTLPPQQDAS 668 (687)
Q Consensus 658 I~GDAedaPFD 668 (687)
+.||+-..++.
T Consensus 81 i~~DaLk~d~~ 91 (259)
T COG0030 81 INGDALKFDFP 91 (259)
T ss_pred EeCchhcCcch
Confidence 99999877766
No 135
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.15 E-value=6.7e-06 Score=85.54 Aligned_cols=85 Identities=13% Similarity=0.272 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT 660 (687)
Q Consensus 581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G 660 (687)
|-|..-+++.+ .+.++..+||.+||.|..|..+++.+++.++|+|+|.++.|++.|++++.. . .++.++++
T Consensus 5 pVll~Evl~~L--~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~-----~ri~~i~~ 75 (296)
T PRK00050 5 PVLLDEVVDAL--AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F-----GRFTLVHG 75 (296)
T ss_pred cccHHHHHHhh--CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C-----CcEEEEeC
Confidence 55777788887 578889999999999999999999986678999999999999999998765 2 47888887
Q ss_pred CCCC---------CCccEEEEEe
Q psy14969 661 LPPQ---------QDASRVNISV 674 (687)
Q Consensus 661 DAed---------aPFDLILVVf 674 (687)
+-.. .++|.|+...
T Consensus 76 ~f~~l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 76 NFSNLKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred CHHHHHHHHHcCCCccCEEEECC
Confidence 7431 1577776653
No 136
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.13 E-value=1.1e-05 Score=85.14 Aligned_cols=69 Identities=22% Similarity=0.173 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC-----CccEE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ-----DASRV 670 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda-----PFDLI 670 (687)
.++.+|||||||+|.++..+++..+ .++|+++|+++.|++.|+++... .++.++.+|+... .||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence 4678999999999999999998873 57999999999999999987542 2466788876543 47877
Q ss_pred EEE
Q psy14969 671 NIS 673 (687)
Q Consensus 671 LVV 673 (687)
+..
T Consensus 183 Is~ 185 (340)
T PLN02490 183 VSA 185 (340)
T ss_pred EEc
Confidence 664
No 137
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.10 E-value=7.3e-06 Score=77.18 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=36.2
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHH
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYL 634 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeA 634 (687)
.+.+|.+|||||||||.++..+++...+.++|+|+|+++.+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 56789999999999999999999887556799999999864
No 138
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.07 E-value=1.3e-05 Score=85.51 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--
Q psy14969 586 SSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-- 663 (687)
Q Consensus 586 lLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-- 663 (687)
.++..+ ...++.+|||||||+|.++..+++... +|+|+|+++.|++.|++.. +. ..++.++.+++.
T Consensus 28 ~il~~l--~~~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~---~~----~~~i~~~~~d~~~~ 95 (475)
T PLN02336 28 EILSLL--PPYEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESIN---GH----YKNVKFMCADVTSP 95 (475)
T ss_pred HHHhhc--CccCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHh---cc----CCceEEEEeccccc
Confidence 444444 345678999999999999999998754 8999999999998876532 11 236778777763
Q ss_pred -----CCCccEEEEEe
Q psy14969 664 -----QQDASRVNISV 674 (687)
Q Consensus 664 -----daPFDLILVVf 674 (687)
...||+|+...
T Consensus 96 ~~~~~~~~fD~I~~~~ 111 (475)
T PLN02336 96 DLNISDGSVDLIFSNW 111 (475)
T ss_pred ccCCCCCCEEEEehhh
Confidence 23588887654
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=98.07 E-value=1.4e-05 Score=81.68 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=52.2
Q ss_pred CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHHHH
Q psy14969 574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR--PHGKVYSLDHMEYLVNFSKENIR 643 (687)
Q Consensus 574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG--P~GrVtGIDISpeAVE~ARKNLK 643 (687)
.|+..+.+.++..+... ...+.+|||+|||||.++..+++.+. +...|+++|+++.+++.|++++.
T Consensus 30 ~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 30 LGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred CCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 46777777777766422 22467999999999999999998642 35699999999999999998864
No 140
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.07 E-value=1.2e-05 Score=80.46 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=52.5
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEEEE
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVNIS 673 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLILVV 673 (687)
-.++||+|||.|.+|..||.... +++++|+++.+++.|++++... .+|.++.++.+ ...||+|++.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~-------~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGL-------PHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---SS-EEEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCC-------CCeEEEECcCCCCCCCCCeeEEEEe
Confidence 36899999999999999999986 8999999999999999998764 36889888854 4569999875
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.06 E-value=2.6e-05 Score=73.99 Aligned_cols=85 Identities=20% Similarity=0.134 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhc--CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969 581 PSFIASSLEPALLK--LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658 (687)
Q Consensus 581 P~VvAlLLElLked--LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI 658 (687)
+...+.+.+.+... ...+.+|||||||+|+++..+++... .|+++|+++.+++.|++++...+. .++.+.
T Consensus 27 ~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~ 98 (224)
T TIGR01983 27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPL-----LKIEYR 98 (224)
T ss_pred HHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCC-----CceEEE
Confidence 33445555555211 23478999999999999999887643 799999999999999999887764 246676
Q ss_pred EcCCC------CCCccEEEEE
Q psy14969 659 RTLPP------QQDASRVNIS 673 (687)
Q Consensus 659 ~GDAe------daPFDLILVV 673 (687)
.++.. ..+||+|+..
T Consensus 99 ~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 99 CTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred eCCHHHhhcCCCCCccEEEeh
Confidence 66642 2468887653
No 142
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.05 E-value=4.2e-05 Score=75.60 Aligned_cols=64 Identities=19% Similarity=0.060 Sum_probs=49.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC----------ccCCCcEEEEEcCCCC
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH----------LLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~----------VaSsgRI~LI~GDAed 664 (687)
+.++.+|||+|||+|..+..||+.. ..|+|||+++.+++.|.. +.++. .....+|.+.++|...
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccC
Confidence 4567899999999999999999864 489999999999998743 22321 1224678888888654
No 143
>PHA03411 putative methyltransferase; Provisional
Probab=98.04 E-value=2e-05 Score=81.91 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=60.7
Q ss_pred CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCC
Q psy14969 574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG 653 (687)
Q Consensus 574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsg 653 (687)
.|+..+.+.+...++ + ....+.+|||+|||+|.++..+++..+ ..+|+|+|+++.|++.|++++.
T Consensus 45 ~G~FfTP~~i~~~f~--~--~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~---------- 109 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--I--DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLP---------- 109 (279)
T ss_pred ceeEcCCHHHHHHHH--h--ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCc----------
Confidence 577766666654432 2 234567999999999999998887752 4599999999999999988642
Q ss_pred cEEEEEcCCCC----CCccEEEE
Q psy14969 654 VVNIMRTLPPQ----QDASRVNI 672 (687)
Q Consensus 654 RI~LI~GDAed----aPFDLILV 672 (687)
++.++.+|... ..||+|+.
T Consensus 110 ~v~~v~~D~~e~~~~~kFDlIIs 132 (279)
T PHA03411 110 EAEWITSDVFEFESNEKFDVVIS 132 (279)
T ss_pred CCEEEECchhhhcccCCCcEEEE
Confidence 34556666543 34887766
No 144
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.03 E-value=1.6e-05 Score=75.21 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=37.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
+.++.+|||||||+|.++..+++..+ ..++|+|+++++++.|++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA 54 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH
Confidence 45788999999999999999886643 478999999999998864
No 145
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.03 E-value=5.6e-06 Score=84.53 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=55.6
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC----CCCCccE
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP----PQQDASR 669 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA----edaPFDL 669 (687)
.+.+..+|.|+|||+|..|..|++.. |.+.|+|||.|++|++.|+.++.... |..+|. +..++|+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~----------f~~aDl~~w~p~~~~dl 95 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDAT----------FEEADLRTWKPEQPTDL 95 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCc----------eecccHhhcCCCCccch
Confidence 35577899999999999999999998 68999999999999999988765544 455553 3456776
Q ss_pred EEEEe
Q psy14969 670 VNISV 674 (687)
Q Consensus 670 ILVVf 674 (687)
++..+
T Consensus 96 lfaNA 100 (257)
T COG4106 96 LFANA 100 (257)
T ss_pred hhhhh
Confidence 65543
No 146
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.02 E-value=6.3e-05 Score=72.67 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
.+.+|||++||||.++..++.... ..|++||.++.+++.+++|++..++ ..++.++.+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~ 108 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSA 108 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhH
Confidence 688999999999999999988753 3899999999999999999999987 45788888886
No 147
>PLN02366 spermidine synthase
Probab=98.02 E-value=4.6e-05 Score=79.36 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCc
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDA 667 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPF 667 (687)
..++.+||+||||.|.++..+++.- +..+|+.+|+++.+++.|++.+...+. .....|++++.+|+. ...|
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHhhccCCCC
Confidence 3567899999999999999998762 346899999999999999999876532 234569999999962 3469
Q ss_pred cEEEEEec
Q psy14969 668 SRVNISVE 675 (687)
Q Consensus 668 DLILVVfA 675 (687)
|+|++...
T Consensus 167 DvIi~D~~ 174 (308)
T PLN02366 167 DAIIVDSS 174 (308)
T ss_pred CEEEEcCC
Confidence 99998753
No 148
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.97 E-value=5.1e-05 Score=76.33 Aligned_cols=77 Identities=16% Similarity=0.071 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR 669 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL 669 (687)
..+.+||+||||+|.++..+++.. +..+|+++|+++.+++.|++++...+. .....+++++.+|+. ..+||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHHHHHhCCCCccE
Confidence 345699999999999998887764 345899999999999999998876541 233467888888863 357999
Q ss_pred EEEEe
Q psy14969 670 VNISV 674 (687)
Q Consensus 670 ILVVf 674 (687)
|++..
T Consensus 149 Ii~D~ 153 (270)
T TIGR00417 149 IIVDS 153 (270)
T ss_pred EEEeC
Confidence 98864
No 149
>KOG1541|consensus
Probab=97.95 E-value=1.4e-05 Score=82.05 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHhhhcCCC--CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969 579 NSPSFIASSLEPALLKLKP--GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkp--G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN 641 (687)
....|..+.+++| .++. +.-|||||||||..+..|.... -..+|+|||+.|++.|.++
T Consensus 32 IQ~em~eRaLELL--alp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~ 91 (270)
T KOG1541|consen 32 IQAEMAERALELL--ALPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVER 91 (270)
T ss_pred ehHHHHHHHHHHh--hCCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHh
Confidence 3456778888887 4555 6789999999999998887553 3789999999999999974
No 150
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.95 E-value=5.4e-05 Score=83.15 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=66.8
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDA 667 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPF 667 (687)
.+++|.+|||+++|.|.-|..+|.+++..|.|++.|+++.-++..++|+++.|+ .++.+...|+.. ..|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-----~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-----SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCchhhhhhhchhhc
Confidence 468999999999999999999999987778999999999999999999999997 456777777653 248
Q ss_pred cEEEEEecCC
Q psy14969 668 SRVNISVEPQ 677 (687)
Q Consensus 668 DLILVVfAP~ 677 (687)
|.|++.+ ||
T Consensus 185 D~ILvDa-PC 193 (470)
T PRK11933 185 DAILLDA-PC 193 (470)
T ss_pred CeEEEcC-CC
Confidence 9997765 55
No 151
>KOG2187|consensus
Probab=97.94 E-value=1.6e-05 Score=88.35 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969 580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR 659 (687)
Q Consensus 580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~ 659 (687)
++.+...+-+++ .+..+..+|||.||||.++.++|+.+. +|+|||+++++++.|++|.+.+|+ .+.+|+.
T Consensus 368 aevLys~i~e~~--~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~Ngi-----sNa~Fi~ 437 (534)
T KOG2187|consen 368 AEVLYSTIGEWA--GLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGI-----SNATFIV 437 (534)
T ss_pred HHHHHHHHHHHh--CCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCc-----cceeeee
Confidence 445566666666 688889999999999999999998886 899999999999999999999998 6789999
Q ss_pred cCCCCC---------CccEEEEEecCCCcC
Q psy14969 660 TLPPQQ---------DASRVNISVEPQKSG 680 (687)
Q Consensus 660 GDAeda---------PFDLILVVfAP~K~g 680 (687)
|.|++. +-.-++++.+|++.|
T Consensus 438 gqaE~~~~sl~~~~~~~~~~v~iiDPpR~G 467 (534)
T KOG2187|consen 438 GQAEDLFPSLLTPCCDSETLVAIIDPPRKG 467 (534)
T ss_pred cchhhccchhcccCCCCCceEEEECCCccc
Confidence 966531 122356778888876
No 152
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.92 E-value=5e-05 Score=59.31 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=49.3
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC------CCccEEEEE
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------QDASRVNIS 673 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------aPFDLILVV 673 (687)
++||+|||+|..+..+++ . +..+++++|+++.+++.+++...... ..++.++.++..+ ..+|+|+..
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhccccCCceEEEEEc
Confidence 489999999999999987 2 35699999999999999986443332 2467777766443 336766554
No 153
>KOG3420|consensus
Probab=97.92 E-value=1.7e-05 Score=77.37 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=66.4
Q ss_pred ccCCcccCcHHHHHHHHHHhhhcC--CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCc
Q psy14969 572 LENCSYLNSPSFIASSLEPALLKL--KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL 649 (687)
Q Consensus 572 IG~GqTISaP~VvAlLLElLkedL--kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~V 649 (687)
++-.++..+|++.+.|+..+.+.. -.|++++|+|||+|.++...+-. + .-.|+|+|+++++++.+.+|.....+
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~-~e~vlGfDIdpeALEIf~rNaeEfEv-- 96 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-K-NESVLGFDIDPEALEIFTRNAEEFEV-- 96 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-C-CceEEeeecCHHHHHHHhhchHHhhh--
Confidence 344467788999999988775422 36899999999999999665533 2 34899999999999999999999877
Q ss_pred cCCCcEEEEEcCCCC
Q psy14969 650 LDEGVVNIMRTLPPQ 664 (687)
Q Consensus 650 aSsgRI~LI~GDAed 664 (687)
.+++++.+-.+
T Consensus 97 ----qidlLqcdild 107 (185)
T KOG3420|consen 97 ----QIDLLQCDILD 107 (185)
T ss_pred ----hhheeeeeccc
Confidence 55777777543
No 154
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.87 E-value=3.6e-05 Score=76.57 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=51.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-------CCCCc
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-------PQQDA 667 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-------edaPF 667 (687)
+.+|.+|||+|||.|.+...|.+.- +.+++|||++++.+..+.++ |+ .++++|. ++..|
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r----Gv--------~Viq~Dld~gL~~f~d~sF 76 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR----GV--------SVIQGDLDEGLADFPDQSF 76 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc----CC--------CEEECCHHHhHhhCCCCCc
Confidence 6789999999999999998888763 56899999999998877664 54 4566654 34569
Q ss_pred cEEEEE
Q psy14969 668 SRVNIS 673 (687)
Q Consensus 668 DLILVV 673 (687)
|.|+++
T Consensus 77 D~VIls 82 (193)
T PF07021_consen 77 DYVILS 82 (193)
T ss_pred cEEehH
Confidence 988764
No 155
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.86 E-value=6.8e-05 Score=74.16 Aligned_cols=76 Identities=28% Similarity=0.369 Sum_probs=57.2
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccE
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASR 669 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDL 669 (687)
..++|..|||+.||-|+++..+|+.. +...|+++|++|.+++..+++++.+++ .+++..+.+|+.. ..+|.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~~~~~dr 172 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLPEGKFDR 172 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG---TT-EEE
T ss_pred cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcCccccCE
Confidence 36789999999999999999999854 356899999999999999999999998 7889999999764 34676
Q ss_pred EEEEe
Q psy14969 670 VNISV 674 (687)
Q Consensus 670 ILVVf 674 (687)
|+...
T Consensus 173 vim~l 177 (200)
T PF02475_consen 173 VIMNL 177 (200)
T ss_dssp EEE--
T ss_pred EEECC
Confidence 66544
No 156
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.86 E-value=8.8e-05 Score=71.03 Aligned_cols=82 Identities=23% Similarity=0.218 Sum_probs=62.1
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcE---------EEEEeCCHHHHHHHHHHHHHcCCC
Q psy14969 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGK---------VYSLDHMEYLVNFSKENIRKNHAH 648 (687)
Q Consensus 578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~Gr---------VtGIDISpeAVE~ARKNLKkaG~~ 648 (687)
-..|.+.+.|+.+. ..+++..|||--||||.+.+..|.... ... ++|.|+++.+++.|+.|++.+++
T Consensus 11 ~L~~~lA~~ll~la--~~~~~~~vlDP~CGsGtiliEaa~~~~-~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~- 86 (179)
T PF01170_consen 11 PLRPTLAAALLNLA--GWRPGDVVLDPFCGSGTILIEAALMGA-NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV- 86 (179)
T ss_dssp SS-HHHHHHHHHHT--T--TTS-EEETT-TTSHHHHHHHHHHT-TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHh--CCCCCCEEeecCCCCCHHHHHHHHHhh-CcccccccccccEEecCCCHHHHHHHHHHHHhccc-
Confidence 35677888888776 688899999999999999988777764 333 88999999999999999999998
Q ss_pred ccCCCcEEEEEcCCCCCC
Q psy14969 649 LLDEGVVNIMRTLPPQQD 666 (687)
Q Consensus 649 VaSsgRI~LI~GDAedaP 666 (687)
.+.+.+..+|+...+
T Consensus 87 ---~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 87 ---EDYIDFIQWDARELP 101 (179)
T ss_dssp ---CGGEEEEE--GGGGG
T ss_pred ---CCceEEEecchhhcc
Confidence 678999998877655
No 157
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.81 E-value=5.2e-05 Score=73.32 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=48.7
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
.|+|+.||.|..|+.+|+... +|++||+++..++.|+.|++..|+ .+++.++.||.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~ 57 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDF 57 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-H
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCH
Confidence 699999999999999999975 899999999999999999999997 78999999994
No 158
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.80 E-value=8.5e-05 Score=74.45 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=66.9
Q ss_pred ccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969 577 YLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN 656 (687)
Q Consensus 577 TISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~ 656 (687)
.+..+.+...+++.+ .+.++..|||||+|+|.+|..|++... +|+++|+++.+++..++++.. ..++.
T Consensus 12 FL~~~~~~~~Iv~~~--~~~~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~-------~~~~~ 79 (262)
T PF00398_consen 12 FLVDPNIADKIVDAL--DLSEGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFAS-------NPNVE 79 (262)
T ss_dssp EEEHHHHHHHHHHHH--TCGTTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTT-------CSSEE
T ss_pred eeCCHHHHHHHHHhc--CCCCCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhh-------cccce
Confidence 356788999999988 677899999999999999999998874 999999999999988887652 45899
Q ss_pred EEEcCCCCCCc
Q psy14969 657 IMRTLPPQQDA 667 (687)
Q Consensus 657 LI~GDAedaPF 667 (687)
++.+|+...+.
T Consensus 80 vi~~D~l~~~~ 90 (262)
T PF00398_consen 80 VINGDFLKWDL 90 (262)
T ss_dssp EEES-TTTSCG
T ss_pred eeecchhcccc
Confidence 99999887654
No 159
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.79 E-value=8.8e-05 Score=65.80 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=42.8
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
.|||||||.|+++..+++.. +.++|+++|.++.+++.++++++.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~ 47 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL 47 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence 48999999999999999886 567999999999999999999998765
No 160
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.78 E-value=9e-05 Score=65.45 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=35.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF 637 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ 637 (687)
..++.+|||||||+|.++..|++... +|+|+|+++.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh
Confidence 56889999999999999999977642 99999999999988
No 161
>PRK01581 speE spermidine synthase; Validated
Probab=97.78 E-value=0.00011 Score=79.10 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH--HHHcCCCccCCCcEEEEEcCCC------CCC
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN--IRKNHAHLLDEGVVNIMRTLPP------QQD 666 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN--LKkaG~~VaSsgRI~LI~GDAe------daP 666 (687)
...+.+||+||||+|+.+..+.+.. +..+|++||+++++++.|++. +...+-......++.++.+|+. ...
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 3456799999999999888777653 356999999999999999962 2211111123578999999865 346
Q ss_pred ccEEEEEe
Q psy14969 667 ASRVNISV 674 (687)
Q Consensus 667 FDLILVVf 674 (687)
||+|++.+
T Consensus 227 YDVIIvDl 234 (374)
T PRK01581 227 YDVIIIDF 234 (374)
T ss_pred ccEEEEcC
Confidence 99999885
No 162
>PRK03612 spermidine synthase; Provisional
Probab=97.76 E-value=0.00012 Score=80.73 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=60.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH--HHHcCCCccCCCcEEEEEcCCCC------CC
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN--IRKNHAHLLDEGVVNIMRTLPPQ------QD 666 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN--LKkaG~~VaSsgRI~LI~GDAed------aP 666 (687)
.+++++|||||||+|..+..+++. ++..+|+++|+++++++.|+++ +...+.......+++++.+|+.. ..
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 356789999999999999888875 2236999999999999999983 33322112335689999998643 57
Q ss_pred ccEEEEEe
Q psy14969 667 ASRVNISV 674 (687)
Q Consensus 667 FDLILVVf 674 (687)
||+|++..
T Consensus 374 fDvIi~D~ 381 (521)
T PRK03612 374 FDVIIVDL 381 (521)
T ss_pred CCEEEEeC
Confidence 99998875
No 163
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.74 E-value=0.00012 Score=67.04 Aligned_cols=64 Identities=28% Similarity=0.421 Sum_probs=50.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL 661 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLV---GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD 661 (687)
.+...|+|+|||-||++..|+..+ .+..+|+|||.++.+++.|.++.++.+... ..++.+..+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 90 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDL--EKRLSFIQGD 90 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchh--hccchhhccc
Confidence 567899999999999999999833 246799999999999999999999887210 2345555554
No 164
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.73 E-value=0.00015 Score=77.53 Aligned_cols=74 Identities=22% Similarity=0.174 Sum_probs=59.6
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccEEEE
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASRVNI 672 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDLILV 672 (687)
+.+|||++||+|..++.+|...+ ...|+++|+++.+++.+++|++.+++ ..+.+..+|+. ...||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL-----ENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-----CceEEEhhhHHHHHhhcCCCCEEEE
Confidence 46899999999999999998764 45899999999999999999999987 24567777754 245887766
Q ss_pred EecCCCc
Q psy14969 673 SVEPQKS 679 (687)
Q Consensus 673 VfAP~K~ 679 (687)
+|+..
T Consensus 132 --DP~Gs 136 (382)
T PRK04338 132 --DPFGS 136 (382)
T ss_pred --CCCCC
Confidence 56533
No 165
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.72 E-value=0.00021 Score=72.09 Aligned_cols=88 Identities=10% Similarity=-0.123 Sum_probs=61.4
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH-------cCCCccC
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK-------NHAHLLD 651 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk-------aG~~VaS 651 (687)
..|.+....... .+.++.+||+.|||.|+.+..||...- +|+|+|+|+.+++.+.+.... .......
T Consensus 28 pnp~L~~~~~~l---~~~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHFSKL---NINDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHHHhc---CCCCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 455555555443 345678999999999999999998854 899999999999998663210 0111223
Q ss_pred CCcEEEEEcCCCCC--------CccEEEE
Q psy14969 652 EGVVNIMRTLPPQQ--------DASRVNI 672 (687)
Q Consensus 652 sgRI~LI~GDAeda--------PFDLILV 672 (687)
..++++.+||.-+. +||.|.-
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyD 130 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYD 130 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeee
Confidence 45789999986543 4777644
No 166
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.71 E-value=0.00021 Score=69.62 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=59.8
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------CCccEE
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------QDASRV 670 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------aPFDLI 670 (687)
..+||||||.|..++.+|+.- |+..++|||+....+..|.+++...++ .++.++.+++.. ..+|.|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l-----~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGL-----KNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTT-----SSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcc-----cceEEEEccHHHHHhhcccCCchheE
Confidence 389999999999999999987 688999999999999999999999987 689999999764 567888
Q ss_pred EEEe
Q psy14969 671 NISV 674 (687)
Q Consensus 671 LVVf 674 (687)
.+.|
T Consensus 93 ~i~F 96 (195)
T PF02390_consen 93 YINF 96 (195)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8876
No 167
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.66 E-value=7.4e-05 Score=75.48 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=37.0
Q ss_pred CCCCeEEEEcCCccH----HHHHHHHhcCC----CcEEEEEeCCHHHHHHHHHHH
Q psy14969 596 KPGDTVLDVGTGSGY----TAACLGYMVRP----HGKVYSLDHMEYLVNFSKENI 642 (687)
Q Consensus 596 kpG~RVLDIGCGTGY----LTAaLArLVGP----~GrVtGIDISpeAVE~ARKNL 642 (687)
.++.+|||+|||||. ++..+++..++ ..+|+|+|+++.|++.|++.+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 345799999999996 45556665432 468999999999999999853
No 168
>KOG1499|consensus
Probab=97.63 E-value=0.00015 Score=77.50 Aligned_cols=63 Identities=25% Similarity=0.414 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
+-.++.|||||||||.++...|+++. .+|+|||-+.-+ +.|.+.+..+++ ++.|+++.|..++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~----~~ii~vi~gkvEd 120 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGL----EDVITVIKGKVED 120 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCc----cceEEEeecceEE
Confidence 44789999999999999999998864 599999999555 999999999998 7789999988764
No 169
>PRK04148 hypothetical protein; Provisional
Probab=97.62 E-value=0.00044 Score=65.38 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=36.2
Q ss_pred CCCCeEEEEcCCccH-HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969 596 KPGDTVLDVGTGSGY-TAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 596 kpG~RVLDIGCGTGY-LTAaLArLVGP~GrVtGIDISpeAVE~ARKN 641 (687)
..+.+|||||||+|. .+..|+++. ..|+|+|+++.+++.|+++
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh
Confidence 356799999999997 777888664 3999999999999988775
No 170
>KOG3191|consensus
Probab=97.62 E-value=0.00045 Score=69.36 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=60.2
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEEEE
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVNIS 673 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLILVV 673 (687)
..-+||||||||+.+..|++..+|.....+.|++|.+++...+.++.++. +++.+..|.. ....|+++..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLSGLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHhhhccCCccEEEEC
Confidence 67899999999999999999998888999999999999999999988876 4555554421 2445655443
Q ss_pred --ecCCCcCcc
Q psy14969 674 --VEPQKSGEI 682 (687)
Q Consensus 674 --fAP~K~gEl 682 (687)
|-|--.+|+
T Consensus 118 PPYVpt~~~~i 128 (209)
T KOG3191|consen 118 PPYVPTSDEEI 128 (209)
T ss_pred CCcCcCCcccc
Confidence 444444444
No 171
>KOG1271|consensus
Probab=97.61 E-value=0.0002 Score=72.14 Aligned_cols=62 Identities=21% Similarity=0.208 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+.+|||+|||.|.+..-|++..- .+.++|+|+++.+++.|+...++.++ .+.|.|.+.|..
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~----~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGF----SNEIRFQQLDIT 128 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCC----CcceeEEEeecc
Confidence 344999999999999999988753 45799999999999999998888888 555777766643
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.56 E-value=0.00018 Score=71.53 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=60.9
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH-cCC------CccC
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK-NHA------HLLD 651 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk-aG~------~VaS 651 (687)
..|.+...+-. + ...++.+||..|||.|+-...||... .+|+|+|+++.+++.|.+.... ... ....
T Consensus 22 ~~p~L~~~~~~-l--~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 22 PNPALVEYLDS-L--ALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp STHHHHHHHHH-H--TTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCHHHHHHHHh-c--CCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 45666666555 3 46778899999999999999999874 3999999999999998543221 111 1234
Q ss_pred CCcEEEEEcCCCCC------CccEEE
Q psy14969 652 EGVVNIMRTLPPQQ------DASRVN 671 (687)
Q Consensus 652 sgRI~LI~GDAeda------PFDLIL 671 (687)
.++|.+.+||--.. +||+|.
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iy 121 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIY 121 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEE
T ss_pred CCceEEEEcccccCChhhcCCceEEE
Confidence 67899999996542 467664
No 173
>KOG1500|consensus
Probab=97.55 E-value=0.00023 Score=76.90 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--CCccEEEEE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--QDASRVNIS 673 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--aPFDLILVV 673 (687)
-.++.|||||||+|.++...|++.. .+|++||.+ +|.++|++-++.+.+ .+||.++.|..++ +|-.+-+++
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~----~~rItVI~GKiEdieLPEk~DviI 248 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNL----ADRITVIPGKIEDIELPEKVDVII 248 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCc----cceEEEccCccccccCchhccEEE
Confidence 3678999999999999999888764 599999998 799999999999887 8899999999875 343333344
Q ss_pred ecCCC
Q psy14969 674 VEPQK 678 (687)
Q Consensus 674 fAP~K 678 (687)
-+|+.
T Consensus 249 SEPMG 253 (517)
T KOG1500|consen 249 SEPMG 253 (517)
T ss_pred eccch
Confidence 45553
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.52 E-value=0.00039 Score=76.06 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=54.9
Q ss_pred CCeEEEEcCCccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC----ccEE
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD----ASRV 670 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLV---GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP----FDLI 670 (687)
+..|||||||+|-++...++++ +...+|+|||.++.++...+++++..++ .++|+++.|+.++.. .|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v~lpekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREVELPEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTSCHSS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCCCCCCceeEE
Confidence 4689999999999987776653 1235999999999999888888888998 889999999988533 5655
Q ss_pred EE
Q psy14969 671 NI 672 (687)
Q Consensus 671 LV 672 (687)
+.
T Consensus 263 VS 264 (448)
T PF05185_consen 263 VS 264 (448)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 175
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.46 E-value=0.00082 Score=63.90 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=48.2
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC---------CC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP---------PQ 664 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA---------ed 664 (687)
....+.+|||+|||+|..+.++|++.+ ..+|+.-|.++ .++..+.|++.++. ....++.+..-+- ..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence 456789999999999999999998843 46999999999 99999999998762 1133444443221 12
Q ss_pred CCccEEEE
Q psy14969 665 QDASRVNI 672 (687)
Q Consensus 665 aPFDLILV 672 (687)
.+||+|+.
T Consensus 118 ~~~D~Ila 125 (173)
T PF10294_consen 118 HSFDVILA 125 (173)
T ss_dssp SSBSEEEE
T ss_pred ccCCEEEE
Confidence 46897765
No 176
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.42 E-value=0.00011 Score=76.05 Aligned_cols=58 Identities=28% Similarity=0.453 Sum_probs=49.3
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN 641 (687)
+.|.+.+.++..+ +..+=.++||+|||||..+..|-.++. +++|+|+|..|++.|.++
T Consensus 109 ~vP~~l~emI~~~--~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 109 SVPELLAEMIGKA--DLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK 166 (287)
T ss_pred ccHHHHHHHHHhc--cCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhc
Confidence 4677788887766 455567999999999999999988886 899999999999998874
No 177
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.40 E-value=0.0012 Score=75.26 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=64.1
Q ss_pred CcHHHHHHHHHHhhhcC-CCCCeEEEEcCCccHHHHHHHHhcC---C---------------------------------
Q psy14969 579 NSPSFIASSLEPALLKL-KPGDTVLDVGTGSGYTAACLGYMVR---P--------------------------------- 621 (687)
Q Consensus 579 SaP~VvAlLLElLkedL-kpG~RVLDIGCGTGYLTAaLArLVG---P--------------------------------- 621 (687)
..|.+.+.|+.+. .. .++..++|-+||||.+.+..|.++. |
T Consensus 173 l~etlAaa~l~~a--~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 173 LKENLAAAILLRS--GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CcHHHHHHHHHHc--CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 4566777777654 44 5688999999999999987766421 1
Q ss_pred -----CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC
Q psy14969 622 -----HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ 665 (687)
Q Consensus 622 -----~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda 665 (687)
..+++|+|+++.+++.|+.|+..+|+ .+.+.+..+|....
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~----~~~i~~~~~D~~~~ 295 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGV----AELITFEVKDVADL 295 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeCChhhc
Confidence 23699999999999999999999998 67789999987543
No 178
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.37 E-value=0.00085 Score=71.18 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=34.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFS 638 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~A 638 (687)
-.|++|||||||.||++..|+...+ ..|+|+|.+.......
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF 154 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQF 154 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHH
Confidence 4689999999999999999998853 4899999998876653
No 179
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.37 E-value=0.00035 Score=70.35 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=34.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF 637 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ 637 (687)
.++.+|||||||||++|..+++.. ..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHH
Confidence 367899999999999999999873 3589999999988765
No 180
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0018 Score=68.60 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=64.4
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------- 664 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------- 664 (687)
++++|.+|||+.++.|.=|..+|+++.. .+.|+++|+++.-++..++|+++.|+ .++.++..|+..
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-----~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-----RNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CceEEEeccccccccccccc
Confidence 7899999999999999999999999854 35669999999999999999999998 335566655432
Q ss_pred CCccEEEEEecCCC
Q psy14969 665 QDASRVNISVEPQK 678 (687)
Q Consensus 665 aPFDLILVVfAP~K 678 (687)
.+||.|++.+ ||-
T Consensus 228 ~~fD~iLlDa-PCS 240 (355)
T COG0144 228 EKFDRILLDA-PCS 240 (355)
T ss_pred CcCcEEEECC-CCC
Confidence 1499997765 653
No 181
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.0014 Score=70.14 Aligned_cols=74 Identities=35% Similarity=0.435 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----CCccE
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-----QDASR 669 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-----aPFDL 669 (687)
..+|.+|||.=+|-||+|..+|+...+ +|+|+|++|+++++.++|++.+++ .+++..+.||+.. ..+|.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v----~~~v~~i~gD~rev~~~~~~aDr 259 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKV----EGRVEPILGDAREVAPELGVADR 259 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCc----cceeeEEeccHHHhhhccccCCE
Confidence 456999999999999999999998753 499999999999999999999998 7779999999753 44788
Q ss_pred EEEEe
Q psy14969 670 VNISV 674 (687)
Q Consensus 670 ILVVf 674 (687)
|+...
T Consensus 260 Iim~~ 264 (341)
T COG2520 260 IIMGL 264 (341)
T ss_pred EEeCC
Confidence 87765
No 182
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.22 E-value=0.0016 Score=66.95 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=65.6
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------CC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------QD 666 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------aP 666 (687)
.+.+|.+|||+++|.|.-|..+|+++...|.|++.|+++.-+...+.++++.|. ..+.+...|+.. ..
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-----~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-----FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHTTT
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-----ceEEEEeeccccccccccccc
Confidence 688999999999999999999999987789999999999999999999999997 456666666432 24
Q ss_pred ccEEEEEecCC
Q psy14969 667 ASRVNISVEPQ 677 (687)
Q Consensus 667 FDLILVVfAP~ 677 (687)
||.|++.+ ||
T Consensus 157 fd~VlvDa-PC 166 (283)
T PF01189_consen 157 FDRVLVDA-PC 166 (283)
T ss_dssp EEEEEEEC-SC
T ss_pred cchhhcCC-Cc
Confidence 89887765 44
No 183
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.22 E-value=0.0013 Score=71.36 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---------CCCc
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------QQDA 667 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------daPF 667 (687)
.|++|||+=|=||..+...|.... .+|++||.|+.+++.|++|++-+++ ...++.++++|+- ...|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHHHHHhcCCcc
Confidence 499999999999999998775532 4899999999999999999999997 3457899999963 3589
Q ss_pred cEEEEE---ecCCCcCc
Q psy14969 668 SRVNIS---VEPQKSGE 681 (687)
Q Consensus 668 DLILVV---fAP~K~gE 681 (687)
|+|++. |+-.|.++
T Consensus 292 DlIilDPPsF~r~k~~~ 308 (393)
T COG1092 292 DLIILDPPSFARSKKQE 308 (393)
T ss_pred cEEEECCcccccCcccc
Confidence 988663 44444444
No 184
>PLN02823 spermine synthase
Probab=97.21 E-value=0.0017 Score=68.85 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccE
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASR 669 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDL 669 (687)
..+.+||.||+|.|+.+..+.+.. +..+|+.||+++.+++.|++.+...+ ......++.++.+|+. ...||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~-~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNR-EAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccccc-ccccCCceEEEEChhHHHHhhCCCCccE
Confidence 356799999999999998887754 24589999999999999999876432 1234578999999864 346999
Q ss_pred EEEEe
Q psy14969 670 VNISV 674 (687)
Q Consensus 670 ILVVf 674 (687)
|++..
T Consensus 180 Ii~D~ 184 (336)
T PLN02823 180 IIGDL 184 (336)
T ss_pred EEecC
Confidence 99884
No 185
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.10 E-value=0.0025 Score=67.19 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT 660 (687)
Q Consensus 581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G 660 (687)
|-|..-++++| .+.+|+.++|.-+|.|..|..+++.++ .|+|+|+|.++.+++.|+++++..+ .++.++++
T Consensus 6 pVll~Evl~~L--~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~ 76 (305)
T TIGR00006 6 SVLLDEVVEGL--NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHD 76 (305)
T ss_pred chhHHHHHHhc--CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeC
Confidence 55777788887 678899999999999999999999885 5899999999999999999987642 47888877
Q ss_pred CCCC----------CCccEEEEEe
Q psy14969 661 LPPQ----------QDASRVNISV 674 (687)
Q Consensus 661 DAed----------aPFDLILVVf 674 (687)
+-.. ..+|.|+...
T Consensus 77 nF~~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 77 NFANFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred CHHHHHHHHHhcCCCcccEEEEec
Confidence 6321 2367776643
No 186
>KOG2899|consensus
Probab=97.09 E-value=0.00069 Score=70.55 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=45.8
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG 646 (687)
..-.+..+|||||-+|.+|+.+|+.+++ -.|.|+||++.+++.|+++++...
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~ 106 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPC 106 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccc
Confidence 3456789999999999999999999974 489999999999999999987643
No 187
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.08 E-value=0.0024 Score=61.96 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
+-..+...|....-+|.+|||+-||||.++........ .+|+.||.++.++...++|++..+. ..++.++.+|+
T Consensus 28 vrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~~~d~ 101 (183)
T PF03602_consen 28 VREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSH
T ss_pred HHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCC----CcceeeeccCH
Confidence 44444544421113789999999999999987666643 4999999999999999999999987 45788888884
Q ss_pred ---------CCCCccEEEEEecCCCc
Q psy14969 663 ---------PQQDASRVNISVEPQKS 679 (687)
Q Consensus 663 ---------edaPFDLILVVfAP~K~ 679 (687)
...+||+|++. ||-.
T Consensus 102 ~~~l~~~~~~~~~fDiIflD--PPY~ 125 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLD--PPYA 125 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE----STT
T ss_pred HHHHHhhcccCCCceEEEEC--CCcc
Confidence 24678977655 5543
No 188
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.06 E-value=0.0019 Score=65.24 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=61.7
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--------CCCccEE
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--------QQDASRV 670 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--------daPFDLI 670 (687)
..+||||||.|-..+.+|+.- |+..++|||+....+..|.+.+.+.++ .++.++.+||. +..+|.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l-----~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGL-----KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCC-----CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 489999999999999999997 688999999999999999999999987 38999999974 3367888
Q ss_pred EEEe
Q psy14969 671 NISV 674 (687)
Q Consensus 671 LVVf 674 (687)
.+.|
T Consensus 124 ~i~F 127 (227)
T COG0220 124 YINF 127 (227)
T ss_pred EEEC
Confidence 8876
No 189
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.03 E-value=0.003 Score=63.90 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=63.0
Q ss_pred CCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhc------CCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 574 NCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMV------RPHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 574 ~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLV------GP~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
.|+..+...++.+|.+.+ ...++.+|||-.||+|.+...+.+.+ .+...++|+|+++.++..|+-++.-.+.
T Consensus 25 ~G~~~TP~~i~~l~~~~~--~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~ 102 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLL--NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI 102 (311)
T ss_dssp CGGC---HHHHHHHHHHH--TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred cceeehHHHHHHHHHhhh--hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence 355666777888888887 67788899999999999988877643 1356899999999999999998876664
Q ss_pred CccCCCcEEEEEcCCC-------CCCccEEEEE
Q psy14969 648 HLLDEGVVNIMRTLPP-------QQDASRVNIS 673 (687)
Q Consensus 648 ~VaSsgRI~LI~GDAe-------daPFDLILVV 673 (687)
......+..++.- ...||.|+..
T Consensus 103 ---~~~~~~i~~~d~l~~~~~~~~~~~D~ii~N 132 (311)
T PF02384_consen 103 ---DNSNINIIQGDSLENDKFIKNQKFDVIIGN 132 (311)
T ss_dssp ---HCBGCEEEES-TTTSHSCTST--EEEEEEE
T ss_pred ---ccccccccccccccccccccccccccccCC
Confidence 1122346666642 2357766443
No 190
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.03 E-value=0.00083 Score=68.19 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=55.4
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCCc
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDA 667 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaPF 667 (687)
+.+.|+|+|||.++...|+.+. +|++||.+|...+.|.+|+.-.|+ .++.++.||+....|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v~g~-----~n~evv~gDA~~y~f 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHVPGD-----VNWEVVVGDARDYDF 94 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCCCCC-----cceEEEecccccccc
Confidence 6899999999999999998875 999999999999999999877775 689999999998887
No 191
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.92 E-value=0.0045 Score=67.85 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCcccCcHHHHHHHHHHhhhcCC-----CCCeEEEEcCCccHHHHHHHHhcCC-------CcEEEEEeCCHHHHHHHHHH
Q psy14969 574 NCSYLNSPSFIASSLEPALLKLK-----PGDTVLDVGTGSGYTAACLGYMVRP-------HGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 574 ~GqTISaP~VvAlLLElLkedLk-----pG~RVLDIGCGTGYLTAaLArLVGP-------~GrVtGIDISpeAVE~ARKN 641 (687)
.|+..+.+.++..|++.+..... ...+|||.|||+|.+.+.++..+.. ...++|+|+++.++..|+.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 46777788899998887632211 3459999999999999988876521 14789999999999999999
Q ss_pred HHHcC
Q psy14969 642 IRKNH 646 (687)
Q Consensus 642 LKkaG 646 (687)
+...+
T Consensus 83 l~~~~ 87 (524)
T TIGR02987 83 LGEFA 87 (524)
T ss_pred HhhcC
Confidence 88775
No 192
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0086 Score=59.68 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=64.7
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 583 VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
|-..+...+.+.--.|.++||+=+|||.+++..+.... .+|+.||.+..++...++|++..+. ..+..++..|+
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~~~~da 102 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGL----EGEARVLRNDA 102 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCC----ccceEEEeecH
Confidence 44555555521124688999999999999988877753 4899999999999999999999986 56777777775
Q ss_pred C--------CCCccEEEEE
Q psy14969 663 P--------QQDASRVNIS 673 (687)
Q Consensus 663 e--------daPFDLILVV 673 (687)
. ..+||+|++.
T Consensus 103 ~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 103 LRALKQLGTREPFDLVFLD 121 (187)
T ss_pred HHHHHhcCCCCcccEEEeC
Confidence 4 2258877654
No 193
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0075 Score=62.83 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=63.4
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccEEEE
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASRVNI 672 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDLILV 672 (687)
++||-||-|.|..+..+.+... ..+++.||+++..++.|++.+........ ..|+.++.+|+. ...||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 6999999999999999998863 56999999999999999999887653112 579999999963 226999999
Q ss_pred EecCC
Q psy14969 673 SVEPQ 677 (687)
Q Consensus 673 VfAP~ 677 (687)
....+
T Consensus 156 D~tdp 160 (282)
T COG0421 156 DSTDP 160 (282)
T ss_pred cCCCC
Confidence 85544
No 194
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.74 E-value=0.0084 Score=58.57 Aligned_cols=66 Identities=24% Similarity=0.189 Sum_probs=51.3
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-CCC-ccEEE
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-QQD-ASRVN 671 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-daP-FDLIL 671 (687)
...+..+|||||.|+|.++..+++.. |+.+++.+|. |..++.|++ .+|+.++.||-- ..| +|+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f~~~P~~D~~~ 163 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFFDPLPVADVYL 163 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TTTCCSSESEEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-----------ccccccccccHHhhhcccccee
Confidence 56677899999999999999999997 7999999999 888888888 358999999853 122 67666
Q ss_pred E
Q psy14969 672 I 672 (687)
Q Consensus 672 V 672 (687)
+
T Consensus 164 l 164 (241)
T PF00891_consen 164 L 164 (241)
T ss_dssp E
T ss_pred e
Confidence 5
No 195
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.67 E-value=0.012 Score=61.67 Aligned_cols=93 Identities=16% Similarity=0.075 Sum_probs=63.0
Q ss_pred CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969 575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654 (687)
Q Consensus 575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR 654 (687)
|..+-......++.+.. .|++|||+=|=||..+...+.. | ..+|++||.|+.+++.|++|++-+++ ...+
T Consensus 106 GlFlDqR~nR~~v~~~~-----~gkrvLnlFsYTGgfsv~Aa~g-G-A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~ 175 (286)
T PF10672_consen 106 GLFLDQRENRKWVRKYA-----KGKRVLNLFSYTGGFSVAAAAG-G-AKEVVSVDSSKRALEWAKENAALNGL---DLDR 175 (286)
T ss_dssp SS-GGGHHHHHHHHHHC-----TTCEEEEET-TTTHHHHHHHHT-T-ESEEEEEES-HHHHHHHHHHHHHTT----CCTC
T ss_pred eEcHHHHhhHHHHHHHc-----CCCceEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCC---Cccc
Confidence 33344444555554443 6899999999999999886644 3 34899999999999999999999987 2367
Q ss_pred EEEEEcCCC--------CCCccEEEEEecCCCc
Q psy14969 655 VNIMRTLPP--------QQDASRVNISVEPQKS 679 (687)
Q Consensus 655 I~LI~GDAe--------daPFDLILVVfAP~K~ 679 (687)
+.++.+|+- ...||+|++ +||..
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIl--DPPsF 206 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIIL--DPPSF 206 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE----SSE
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEE--CCCCC
Confidence 899998863 357997755 45543
No 196
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.66 E-value=0.0089 Score=63.30 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----ccCCCcEEEEEcCCC--------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH-----LLDEGVVNIMRTLPP-------- 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~-----VaSsgRI~LI~GDAe-------- 663 (687)
++.+|||+|||-|.-..-....- -..++|+|++...++.|++|++...-. ..-.-...++.+|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 78899999999888766665542 359999999999999999999432210 000124566777643
Q ss_pred ---CCCccEEEEEec
Q psy14969 664 ---QQDASRVNISVE 675 (687)
Q Consensus 664 ---daPFDLILVVfA 675 (687)
..+||+|.+-++
T Consensus 140 ~~~~~~FDvVScQFa 154 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFA 154 (331)
T ss_dssp SSTTS-EEEEEEES-
T ss_pred cccCCCcceeehHHH
Confidence 247888877653
No 197
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.65 E-value=0.0082 Score=60.64 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CC-Cc
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQ-DA 667 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------da-PF 667 (687)
...+.+||-||-|.|..+..+.+.- +..+|+.||+++.+++.|++.+...... ....|++++.+|+. .. .|
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCcc
Confidence 4467899999999999999888764 3469999999999999999988764321 34679999999962 23 79
Q ss_pred cEEEEEe
Q psy14969 668 SRVNISV 674 (687)
Q Consensus 668 DLILVVf 674 (687)
|+|++..
T Consensus 152 DvIi~D~ 158 (246)
T PF01564_consen 152 DVIIVDL 158 (246)
T ss_dssp EEEEEES
T ss_pred cEEEEeC
Confidence 9998873
No 198
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.63 E-value=0.0043 Score=66.65 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=58.7
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccEEEE
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASRVNI 672 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDLILV 672 (687)
-+|||+.||||..++.++..++....|+++|+++.+++.+++|++.++. .++.++.+|+. ...||+|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 4899999999999999998752134899999999999999999999876 35778888865 245897765
Q ss_pred EecCCC
Q psy14969 673 SVEPQK 678 (687)
Q Consensus 673 VfAP~K 678 (687)
+|..
T Consensus 121 --DPfG 124 (374)
T TIGR00308 121 --DPFG 124 (374)
T ss_pred --CCCC
Confidence 5643
No 199
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.62 E-value=0.0083 Score=59.71 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CccCCCcE
Q psy14969 580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA----HLLDEGVV 655 (687)
Q Consensus 580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~----~VaSsgRI 655 (687)
.|...+.+++.+ .+.+++..+|||||.|-.....|...+ -.+++|||+.+...+.|........- .-....++
T Consensus 27 ~~~~~~~il~~~--~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 27 SPEFVSKILDEL--NLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHHHT--T--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred CHHHHHHHHHHh--CCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 455666777777 688999999999999999888776653 34699999999999998875543221 01124678
Q ss_pred EEEEcCCCCC--------CccEEEEE
Q psy14969 656 NIMRTLPPQQ--------DASRVNIS 673 (687)
Q Consensus 656 ~LI~GDAeda--------PFDLILVV 673 (687)
.+..||-... ..|+|++.
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~N 129 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVN 129 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE-
T ss_pred eeeccCccccHhHhhhhcCCCEEEEe
Confidence 8888885442 24666554
No 200
>KOG4300|consensus
Probab=96.62 E-value=0.003 Score=64.82 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=52.0
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEE-EEEcCCCCCC------ccEEEE
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVN-IMRTLPPQQD------ASRVNI 672 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~-LI~GDAedaP------FDLILV 672 (687)
.|||||||||..=-.+- . .|..+|+.+|.++.|-+.|.+.+++... -++. |+.++++.+| +|.|+.
T Consensus 79 ~vLEvgcGtG~Nfkfy~-~-~p~~svt~lDpn~~mee~~~ks~~E~k~-----~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYP-W-KPINSVTCLDPNEKMEEIADKSAAEKKP-----LQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred ceEEecccCCCCccccc-C-CCCceEEEeCCcHHHHHHHHHHHhhccC-----cceEEEEeechhcCcccccCCeeeEEE
Confidence 57999999997744432 1 1567999999999999999999998754 2444 7777776555 888876
Q ss_pred Eec
Q psy14969 673 SVE 675 (687)
Q Consensus 673 VfA 675 (687)
++-
T Consensus 152 Tlv 154 (252)
T KOG4300|consen 152 TLV 154 (252)
T ss_pred EEE
Confidence 643
No 201
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.57 E-value=0.0088 Score=66.25 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCccE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDASR 669 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPFDL 669 (687)
.+..+||||||.|-+++.+|+.. |+..++|+|+....+..|.+.+...++ .++.++.+++. ...+|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l-----~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNI-----TNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCC-----CeEEEEcCCHHHHHHhcCcccccE
Confidence 46789999999999999999997 688999999999999999999888887 46777777653 345888
Q ss_pred EEEEe
Q psy14969 670 VNISV 674 (687)
Q Consensus 670 ILVVf 674 (687)
|.+.|
T Consensus 421 i~i~F 425 (506)
T PRK01544 421 IYILF 425 (506)
T ss_pred EEEEC
Confidence 88876
No 202
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.56 E-value=0.011 Score=60.65 Aligned_cols=89 Identities=22% Similarity=0.322 Sum_probs=60.6
Q ss_pred HHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHH----HHHHHHHHHHcCCCccCCCcEEE
Q psy14969 583 FIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYL----VNFSKENIRKNHAHLLDEGVVNI 657 (687)
Q Consensus 583 VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeA----VE~ARKNLKkaG~~VaSsgRI~L 657 (687)
+.|.++.-+. -.+++|.+||-+|..+|.....++..+++.|.|+|||.++.. +..|++| .+|--
T Consensus 58 LaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----------~NIiP 126 (229)
T PF01269_consen 58 LAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----------PNIIP 126 (229)
T ss_dssp HHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----------TTEEE
T ss_pred HHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----------Cceee
Confidence 5555544332 167899999999999999999999999999999999999954 5555443 25555
Q ss_pred EEcCCCC--------CCccEEEEEecCCCcCcc
Q psy14969 658 MRTLPPQ--------QDASRVNISVEPQKSGEI 682 (687)
Q Consensus 658 I~GDAed--------aPFDLILVVfAP~K~gEl 682 (687)
+.+||.. ...|+|+..++.+...+|
T Consensus 127 Il~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I 159 (229)
T PF01269_consen 127 ILEDARHPEKYRMLVEMVDVIFQDVAQPDQARI 159 (229)
T ss_dssp EES-TTSGGGGTTTS--EEEEEEE-SSTTHHHH
T ss_pred eeccCCChHHhhcccccccEEEecCCChHHHHH
Confidence 6677652 358999988887765554
No 203
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.0096 Score=64.11 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=64.5
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI 658 (687)
..|.+...+..+. .+++|..|||==||||.+......+. ++|+|.|++..|++-|+.|++..++ ....+.
T Consensus 181 ~~P~lAR~mVNLa--~v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i-----~~~~~~ 250 (347)
T COG1041 181 MDPRLARAMVNLA--RVKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGI-----EDYPVL 250 (347)
T ss_pred cCHHHHHHHHHHh--ccccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCc-----CceeEE
Confidence 4667777777766 79999999999999999998877554 4999999999999999999999986 234445
Q ss_pred Ec-CCCCCCcc
Q psy14969 659 RT-LPPQQDAS 668 (687)
Q Consensus 659 ~G-DAedaPFD 668 (687)
.+ |+...|++
T Consensus 251 ~~~Da~~lpl~ 261 (347)
T COG1041 251 KVLDATNLPLR 261 (347)
T ss_pred EecccccCCCC
Confidence 44 77766654
No 204
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.51 E-value=0.0047 Score=61.72 Aligned_cols=79 Identities=11% Similarity=0.070 Sum_probs=57.3
Q ss_pred CCCCCccccCCcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 565 YHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 565 YsD~pLPIG~GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
|.+.|..+|.- .-+.+.+.++|+..+ +...|.-|||+|.|||.+|-++....-+...+++||++++.+..-.+.+..
T Consensus 19 wi~~PrtVGaI-~PsSs~lA~~M~s~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~ 95 (194)
T COG3963 19 WIDNPRTVGAI-LPSSSILARKMASVI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG 95 (194)
T ss_pred HhcCCceeeee-cCCcHHHHHHHHhcc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC
Confidence 44444444321 124555777777766 677888999999999999977766654567999999999999888777655
Q ss_pred cC
Q psy14969 645 NH 646 (687)
Q Consensus 645 aG 646 (687)
.+
T Consensus 96 ~~ 97 (194)
T COG3963 96 VN 97 (194)
T ss_pred cc
Confidence 43
No 205
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.019 Score=62.49 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC---C----------------------------Cc----
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR---P----------------------------HG---- 623 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG---P----------------------------~G---- 623 (687)
..+.+.+.|+.+. ..+++..++|==||||.+.+-.|.+.. | .+
T Consensus 175 LketLAaAil~la--gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 175 LKETLAAAILLLA--GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred chHHHHHHHHHHc--CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 3455666666554 677888999999999999988887652 1 11
Q ss_pred ---EEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 624 ---KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 624 ---rVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
.++|+|+++.+++.|+.|...+|+ .+.|.|.++|+..
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv----~d~I~f~~~d~~~ 292 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGV----GDLIEFKQADATD 292 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCC----CceEEEEEcchhh
Confidence 378999999999999999999999 8899999999774
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.31 E-value=0.016 Score=58.59 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=60.1
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----ccEEEE
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----ASRVNI 672 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FDLILV 672 (687)
+.+++|||+|.|.=+..||-.. |+.+|+-+|....-+..-+.-..+.++ .++.++++.+++.. ||+|+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L-----~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGL-----ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCC-----CCeEEehhhHhhcccccccCcEEEe
Confidence 6899999999999999999555 788899999999999999998889887 56899999988654 998875
No 207
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.27 E-value=0.031 Score=59.18 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=41.2
Q ss_pred CCeEEEEcCCccHH-HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCccCCCcEEEEEcC
Q psy14969 598 GDTVLDVGTGSGYT-AACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-HAHLLDEGVVNIMRTL 661 (687)
Q Consensus 598 G~RVLDIGCGTGYL-TAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-G~~VaSsgRI~LI~GD 661 (687)
.-++||||||.-.+ ....++.. +.+++|.|+++..++.|+++++.+ ++ ..+|.++...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~~~~ 162 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNL----ESRIELRKQK 162 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEEEcC
Confidence 45899999997754 45545554 589999999999999999999999 77 7788887654
No 208
>KOG3010|consensus
Probab=96.24 E-value=0.0069 Score=63.00 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=35.8
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
.++|||||+|.-+..+|.... +|+|+|+++.|++.|++.-+.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~ 77 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPV 77 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCc
Confidence 899999999977777777764 899999999999998885443
No 209
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.14 E-value=0.0025 Score=54.71 Aligned_cols=70 Identities=27% Similarity=0.383 Sum_probs=22.9
Q ss_pred EEEcCCccHHHHHHHHhcCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-------CCCccEEEE
Q psy14969 602 LDVGTGSGYTAACLGYMVRPHG--KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-------QQDASRVNI 672 (687)
Q Consensus 602 LDIGCGTGYLTAaLArLVGP~G--rVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-------daPFDLILV 672 (687)
||||+..|+.|..+++.+.+.+ +++++|..+. .+.+++.+++.++ ..++.++.|+.. ..++|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~----~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL----SDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC----CCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 6999999999999998876554 7999999997 4455556665555 567999999965 257899988
Q ss_pred EecC
Q psy14969 673 SVEP 676 (687)
Q Consensus 673 VfAP 676 (687)
...+
T Consensus 76 Dg~H 79 (106)
T PF13578_consen 76 DGDH 79 (106)
T ss_dssp ES--
T ss_pred CCCC
Confidence 8754
No 210
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.14 E-value=0.018 Score=57.42 Aligned_cols=68 Identities=25% Similarity=0.200 Sum_probs=52.7
Q ss_pred EEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----C-CccEEEEE
Q psy14969 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----Q-DASRVNIS 673 (687)
Q Consensus 601 VLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----a-PFDLILVV 673 (687)
|.||||-=||+...|.+.. ...+|+++|+++.-++.|++++++.++ .+++.+..||+-. . ..|.|++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccccCCCCCCCEEEEe
Confidence 6899999999999999885 345899999999999999999999998 7899999999532 1 25566553
No 211
>KOG1501|consensus
Probab=96.12 E-value=0.0088 Score=66.71 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=48.4
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL 661 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD 661 (687)
.|||||+|||.++.+.++..+ + .|+|+|.-+.|++.|++-..++|+ +++|.++.-.
T Consensus 69 ~vLdigtGTGLLSmMAvraga-D-~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA-D-SVTACEVFKPMVDLARKIMHKNGM----SDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC-C-eEEeehhhchHHHHHHHHHhcCCC----ccceeeeccc
Confidence 689999999999988887764 3 799999999999999999999999 6677776533
No 212
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.11 E-value=0.033 Score=57.12 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG 646 (687)
.+.+|||+|+|+|.-+.++....+.-.+++++|.++.|++.|+.-+....
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~ 82 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP 82 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence 45699999999998776666665434689999999999999998766543
No 213
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.07 E-value=0.022 Score=55.88 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=55.2
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----CCccEEEE
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----QDASRVNI 672 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----aPFDLILV 672 (687)
+++|||+|.|.=+..||-+. |+.+|+.+|....-+..-+.-....++ .++.++.+.++. ..||.|+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL-----SNVEVINGRAEEPEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHHTTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC-----CCEEEEEeeecccccCCCccEEEe
Confidence 89999999999999999887 688999999999999999999999998 468888888654 55777654
No 214
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.02 E-value=0.049 Score=42.04 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=32.5
Q ss_pred EEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 601 VLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
+||+|||+|..+ .++........++|+|+++.++..++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG 94 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh
Confidence 999999999987 5555543123799999999999986655543
No 215
>KOG1122|consensus
Probab=95.99 E-value=0.02 Score=63.43 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=67.0
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-------
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD------- 666 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP------- 666 (687)
++++|.||||+.+..|.-|..+|.++.-.|.|+|.|.+..-++.-+.++.+.|+ ....+...|....|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-----~ntiv~n~D~~ef~~~~~~~~ 312 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-----TNTIVSNYDGREFPEKEFPGS 312 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-----CceEEEccCcccccccccCcc
Confidence 689999999999999999999999987789999999999999999999999998 33445555655543
Q ss_pred ccEEEEEecCCC
Q psy14969 667 ASRVNISVEPQK 678 (687)
Q Consensus 667 FDLILVVfAP~K 678 (687)
||+|+..+ ||.
T Consensus 313 fDRVLLDA-PCS 323 (460)
T KOG1122|consen 313 FDRVLLDA-PCS 323 (460)
T ss_pred cceeeecC-CCC
Confidence 99998775 654
No 216
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.86 E-value=0.028 Score=56.75 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=43.1
Q ss_pred CCCC-eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 596 KPGD-TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 596 kpG~-RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
.... +|||||+|||--+..+|+.+ |+.+-.--|+++.....-+..+...+.
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~ 74 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL 74 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC
Confidence 3344 59999999999999999999 577888999999998777777777776
No 217
>KOG2730|consensus
Probab=95.81 E-value=0.013 Score=60.62 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
....|+|.=||.|..|+.+|.... .|++||++|.-+..|++|++-.|+ ..||.|++||..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~l 153 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFL 153 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecC----CceeEEEechHH
Confidence 567899999999999999998765 799999999999999999999998 679999999943
No 218
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.64 E-value=0.015 Score=59.23 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=55.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC--CCCCccEEEE
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP--PQQDASRVNI 672 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA--edaPFDLILV 672 (687)
.-.|++|||.|+|+|.-+++.++.+. ..|++.|++|.++...+-|.+.+++ .+.++..+. ....||+++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g~~~~~Dl~La 148 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIGSPPAFDLLLA 148 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccCCCcceeEEEe
Confidence 34789999999999999988887764 5899999999999999999999987 556665553 3344777765
No 219
>PRK10742 putative methyltransferase; Provisional
Probab=95.63 E-value=0.089 Score=54.69 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=64.2
Q ss_pred HHHHHhhhcCCCCC--eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CccC--CCcEEEEE
Q psy14969 586 SSLEPALLKLKPGD--TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA--HLLD--EGVVNIMR 659 (687)
Q Consensus 586 lLLElLkedLkpG~--RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~--~VaS--sgRI~LI~ 659 (687)
.++.++ .+++|. +|||.-+|+|..+..++.+. ++|+++|.++.+....+.+++.... .+.. ..++.++.
T Consensus 77 ~l~kAv--glk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 77 AVAKAV--GIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred HHHHHh--CCCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 344444 577887 99999999999999999884 4799999999999999999998521 1111 25789999
Q ss_pred cCCC------CCCccEEEEEecCCCc
Q psy14969 660 TLPP------QQDASRVNISVEPQKS 679 (687)
Q Consensus 660 GDAe------daPFDLILVVfAP~K~ 679 (687)
+++. ...||+|.+ +|+-.
T Consensus 152 ~da~~~L~~~~~~fDVVYl--DPMfp 175 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYL--DPMFP 175 (250)
T ss_pred CcHHHHHhhCCCCCcEEEE--CCCCC
Confidence 8853 225887764 45433
No 220
>PRK00536 speE spermidine synthase; Provisional
Probab=95.54 E-value=0.07 Score=55.34 Aligned_cols=77 Identities=14% Similarity=-0.097 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC--CCCccEEEE
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP--QQDASRVNI 672 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe--daPFDLILV 672 (687)
.+.+++||-||.|.|..+..+.+.- . +|+-||+++.+++.+++.+....- .....|+.++..-.. ...||+|++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~--~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD--T-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQLLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC--C-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeehhhhccCCcCCEEEE
Confidence 4567899999999999999998873 3 999999999999999998886532 345678888765433 246999998
Q ss_pred Eec
Q psy14969 673 SVE 675 (687)
Q Consensus 673 VfA 675 (687)
...
T Consensus 146 Ds~ 148 (262)
T PRK00536 146 LQE 148 (262)
T ss_pred cCC
Confidence 743
No 221
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.44 E-value=0.022 Score=60.46 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT 660 (687)
Q Consensus 581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G 660 (687)
|-|..-+++.| .++++..++|.--|.|..|..+.+..+ .++|+|+|.++.+++.|++++... .+++.++.+
T Consensus 6 PVll~Evl~~L--~~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~ 76 (310)
T PF01795_consen 6 PVLLKEVLEAL--NPKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF------DDRFIFIHG 76 (310)
T ss_dssp -TTHHHHHHHH--T--TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES
T ss_pred cccHHHHHHhh--CcCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc------cceEEEEec
Confidence 45777778888 588899999999999999999998885 499999999999999999887765 358888887
Q ss_pred C
Q psy14969 661 L 661 (687)
Q Consensus 661 D 661 (687)
.
T Consensus 77 ~ 77 (310)
T PF01795_consen 77 N 77 (310)
T ss_dssp -
T ss_pred c
Confidence 7
No 222
>PHA01634 hypothetical protein
Probab=95.27 E-value=0.056 Score=52.48 Aligned_cols=76 Identities=14% Similarity=-0.087 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCCccEEEEEecC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNISVEP 676 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaPFDLILVVfAP 676 (687)
.+.+|+|||.+-|-.++.++...+ ..|+++|.++.+.+..+.+++-+.++-.......+ .....|||...+.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW---~~~Y~~~Di~~iDCeG 102 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEW---NGEYEDVDIFVMDCEG 102 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhheeeeceeecccc---cccCCCcceEEEEccc
Confidence 588999999999999999997754 48999999999999999999888762111111111 1367889999888876
Q ss_pred C
Q psy14969 677 Q 677 (687)
Q Consensus 677 ~ 677 (687)
+
T Consensus 103 C 103 (156)
T PHA01634 103 C 103 (156)
T ss_pred h
Confidence 5
No 223
>KOG1975|consensus
Probab=95.25 E-value=0.052 Score=58.91 Aligned_cols=79 Identities=19% Similarity=0.131 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCcc-CCCcEEEEEcCCC----------
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL-DEGVVNIMRTLPP---------- 663 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~Va-SsgRI~LI~GDAe---------- 663 (687)
.++++.+||+|||-|.-..-.-++.- +.++|+||....++.|++|++...-.-- -.-.+.|+.||-.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 67899999999999998877766543 5899999999999999999987542000 0123567777632
Q ss_pred CCC-ccEEEEEec
Q psy14969 664 QQD-ASRVNISVE 675 (687)
Q Consensus 664 daP-FDLILVVfA 675 (687)
..| ||++..-|+
T Consensus 193 ~dp~fDivScQF~ 205 (389)
T KOG1975|consen 193 KDPRFDIVSCQFA 205 (389)
T ss_pred CCCCcceeeeeee
Confidence 355 888776543
No 224
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.21 E-value=0.098 Score=56.01 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT 660 (687)
Q Consensus 581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G 660 (687)
|-+..-+++.| .++++...+|.--|.|..+..+...+++.++++|+|.++.+++.|++++...+ +++.++++
T Consensus 9 pVLl~E~i~~L--~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~ 80 (314)
T COG0275 9 PVLLNEVVELL--APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHG 80 (314)
T ss_pred chHHHHHHHhc--ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeC
Confidence 34666677777 68889999999999999999988888777899999999999999999998865 47777777
Q ss_pred C
Q psy14969 661 L 661 (687)
Q Consensus 661 D 661 (687)
.
T Consensus 81 ~ 81 (314)
T COG0275 81 N 81 (314)
T ss_pred c
Confidence 5
No 225
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.15 E-value=0.036 Score=58.02 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCCccEEEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNI 672 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaPFDLILV 672 (687)
...++||||+|.|-.|..|+.... +|++-|.|+.|. .++++.|+.++.... +. ....+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr----~rL~~kg~~vl~~~~--w~---~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMR----WRLSKKGFTVLDIDD--WQ---QTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHH----HHHHhCCCeEEehhh--hh---ccCCceEEEee
Confidence 356899999999999999999986 799999999995 566677874443222 11 12346887765
No 226
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.09 E-value=0.091 Score=54.08 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccE
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASR 669 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDL 669 (687)
++.+.++.||||-=||+++.|-+.. +..++++.|+++..++.|.+++++++. .++++...||.- ...+|.
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl~~l~~~d~~d~ 88 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGLAVLELEDEIDV 88 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCccccCccCCcCE
Confidence 4567779999999999999998875 567999999999999999999999998 788888888853 234676
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
+++.
T Consensus 89 ivIA 92 (226)
T COG2384 89 IVIA 92 (226)
T ss_pred EEEe
Confidence 6554
No 227
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.91 E-value=0.02 Score=59.93 Aligned_cols=77 Identities=25% Similarity=0.223 Sum_probs=57.7
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CccCCCcEEEEEcCCC-------CC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA-HLLDEGVVNIMRTLPP-------QQ 665 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~-~VaSsgRI~LI~GDAe-------da 665 (687)
.++.|.+|||.++|-||.++..++... -.|+++|.+|..++.|.-| .| .-+.+..++++.||+. +.
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lN----PwSr~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLN----PWSRELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccC----CCCccccccccEEecccHHHHHhcCCcc
Confidence 466799999999999999998877643 3899999999999988764 33 1122336899999964 45
Q ss_pred CccEEEEEecCCC
Q psy14969 666 DASRVNISVEPQK 678 (687)
Q Consensus 666 PFDLILVVfAP~K 678 (687)
.||.|+- +|++
T Consensus 205 sfDaIiH--DPPR 215 (287)
T COG2521 205 SFDAIIH--DPPR 215 (287)
T ss_pred ccceEee--CCCc
Confidence 6887643 4554
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.65 E-value=0.03 Score=52.53 Aligned_cols=37 Identities=32% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHH
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEY 633 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpe 633 (687)
.+.+|||+||++|..+.++.+..++.++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 3489999999999999999998855689999999977
No 229
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.23 E-value=0.26 Score=52.45 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=42.6
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRP---HGKVYSLDHMEYLVNFSKENIR 643 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP---~GrVtGIDISpeAVE~ARKNLK 643 (687)
.+.++..++|+|||+|.-+..|...+.+ ..+.++||+|.++++.|.+++.
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 4667789999999999999888766532 3578999999999999999998
No 230
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.23 E-value=0.18 Score=52.58 Aligned_cols=53 Identities=25% Similarity=0.247 Sum_probs=40.2
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
.+.+..+|+|||||.==++...-... ++..++|+||+..+++...+.+...++
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~ 154 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGV 154 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-
T ss_pred cCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45668899999999887777665443 467999999999999999999999987
No 231
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.23 E-value=0.072 Score=55.17 Aligned_cols=49 Identities=29% Similarity=0.394 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHHHHc
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPH-GKVYSLDHMEYLVNFSKENIRKN 645 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~-GrVtGIDISpeAVE~ARKNLKka 645 (687)
.+-++.|=+||+||+...++-+-+.. ..|+|-||++++++.|++|+.-.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 34589999999999999998664322 58999999999999999998644
No 232
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.12 E-value=0.19 Score=46.82 Aligned_cols=56 Identities=27% Similarity=0.362 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
-.+.+...++... ..+|+.|||-=+|||..+.+..++.. +.+|+|+++..++.|++
T Consensus 176 kP~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhh---hccceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence 3446677777665 67899999999999977766555543 89999999999999875
No 233
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.97 E-value=0.25 Score=51.92 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=44.3
Q ss_pred CeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCccCCCcEEEEEcCCCC-----CCccEEE
Q psy14969 599 DTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR-KNHAHLLDEGVVNIMRTLPPQ-----QDASRVN 671 (687)
Q Consensus 599 ~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK-kaG~~VaSsgRI~LI~GDAed-----aPFDLIL 671 (687)
.+|+=||+|. ...+..|++..+++..|+++|+++++++.|++-++ ..++ +.++.|+.+|... ..||+|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDVTYDLKEYDVVF 197 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG----SEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhccccccccCCEEE
Confidence 5999999996 44556667655556789999999999999999888 4455 6789999988642 4678776
Q ss_pred EEe
Q psy14969 672 ISV 674 (687)
Q Consensus 672 VVf 674 (687)
+.+
T Consensus 198 lAa 200 (276)
T PF03059_consen 198 LAA 200 (276)
T ss_dssp E-T
T ss_pred Ehh
Confidence 654
No 234
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=93.77 E-value=0.2 Score=54.53 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=45.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC-----CCCccE
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP-----QQDASR 669 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe-----daPFDL 669 (687)
+.+|+++|||||++|..|-.|.+... +|+|||..+ |. ..+. ...+|....+++- ..++|.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~----~~L~-------~~~~V~h~~~d~fr~~p~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MA----QSLM-------DTGQVEHLRADGFKFRPPRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cC----Hhhh-------CCCCEEEEeccCcccCCCCCCCCE
Confidence 46899999999999999999998853 999999654 21 1222 2346777766642 345787
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
++..
T Consensus 274 vVcD 277 (357)
T PRK11760 274 LVCD 277 (357)
T ss_pred EEEe
Confidence 7665
No 235
>PRK11524 putative methyltransferase; Provisional
Probab=93.44 E-value=0.31 Score=49.88 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969 582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645 (687)
Q Consensus 582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka 645 (687)
.+...++... -.+|+.|||-=+|||..+.+..++.. +.+|+|++++.++.|++|+...
T Consensus 196 ~L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl~~~ 253 (284)
T PRK11524 196 ALLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRLDVA 253 (284)
T ss_pred HHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHhc
Confidence 4666666654 57899999999999977666555533 7999999999999999998754
No 236
>KOG2361|consensus
Probab=93.41 E-value=0.082 Score=55.35 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=49.7
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCC---ccCCCcEEEEEcCCCCCCccEEEEE
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPH--GKVYSLDHMEYLVNFSKENIRKNHAH---LLDEGVVNIMRTLPPQQDASRVNIS 673 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~--GrVtGIDISpeAVE~ARKNLKkaG~~---VaSsgRI~LI~GDAedaPFDLILVV 673 (687)
.+|||||||-|.....+.+-- ++ -.|+++|.++.+++..+++..-..-. .+..-..+-..+..+...+|.|+.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 379999999999999888765 34 89999999999999988865443210 0000000002333445568887776
Q ss_pred e
Q psy14969 674 V 674 (687)
Q Consensus 674 f 674 (687)
|
T Consensus 152 F 152 (264)
T KOG2361|consen 152 F 152 (264)
T ss_pred E
Confidence 4
No 237
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.66 E-value=0.47 Score=49.01 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=67.3
Q ss_pred HHHHHHHHHhh-hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969 582 SFIASSLEPAL-LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT 660 (687)
Q Consensus 582 ~VvAlLLElLk-edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G 660 (687)
.+.|.++.-|. -.+++|.+||=+|..+|.....++..++ .|.|+|||.++.....--.-+++. .++--+.+
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R-------~Ni~PIL~ 131 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR-------PNIIPILE 131 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC-------CCceeeec
Confidence 35566655553 2577999999999999999999999997 899999999987665444333332 24455566
Q ss_pred CCCC--------CCccEEEEEecCCCcCcc
Q psy14969 661 LPPQ--------QDASRVNISVEPQKSGEI 682 (687)
Q Consensus 661 DAed--------aPFDLILVVfAP~K~gEl 682 (687)
||.. ...|+|...+|.+...+|
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I 161 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEI 161 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHH
Confidence 6542 348999888888776655
No 238
>KOG1596|consensus
Probab=92.53 E-value=0.14 Score=54.05 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=56.0
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCH----HHHHHHHHHHHHcCC--CccCCCcEEEEEcCCCCCCc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHME----YLVNFSKENIRKNHA--HLLDEGVVNIMRTLPPQQDA 667 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISp----eAVE~ARKNLKkaG~--~VaSsgRI~LI~GDAedaPF 667 (687)
+++||.+||=+|+++|+....++..++|.|-||++|.+. +++..|+++-.-..+ ....-++.....+- .
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgm-----V 227 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGM-----V 227 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeee-----E
Confidence 789999999999999999999999999999999999885 566666665222111 00001222223332 6
Q ss_pred cEEEEEecCCCc
Q psy14969 668 SRVNISVEPQKS 679 (687)
Q Consensus 668 DLILVVfAP~K~ 679 (687)
|.|+..++++..
T Consensus 228 DvIFaDvaqpdq 239 (317)
T KOG1596|consen 228 DVIFADVAQPDQ 239 (317)
T ss_pred EEEeccCCCchh
Confidence 777777776643
No 239
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=92.43 E-value=1.8 Score=46.73 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
..-+||||.||.|.+..-.....+. .-.|.-.|.++..++.+++.+++.|+ .+.+.|..+|+-+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL----~~i~~f~~~dAfd 199 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL----EDIARFEQGDAFD 199 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC----ccceEEEecCCCC
Confidence 4569999999999997776665532 25899999999999999999999999 6666999999753
No 240
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=1.3 Score=48.63 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=74.9
Q ss_pred HhhchhcCCCCCCHHHHHHHHhCCCccCCCCCCCCCCCCCcccc-CCcccCcHHHHHHHHHHhh--------hcCC-CCC
Q psy14969 530 VALCVSEFDMYKTKELRDLMIKVDRKDFCPPNRNPYHDYSVMLE-NCSYLNSPSFIASSLEPAL--------LKLK-PGD 599 (687)
Q Consensus 530 VvQqLRsnG~IdS~EV~qAMraVPReaFVP~gyqAYsD~pLPIG-~GqTISaP~VvAlLLElLk--------edLk-pG~ 599 (687)
+++.+...|++.=.+.++..+.-|..- -|.. ..++| .|-.+++|++-.+.-+.+. .... ..-
T Consensus 8 ~~~~i~~~g~i~f~~fM~~~L~~p~~G-------YYs~-~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~ 79 (370)
T COG1565 8 IRALIAQGGPISFSDFMELALYDPEHG-------YYSS-AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPL 79 (370)
T ss_pred HHHHHhcCCCccHHHHHHHHHcCCCCc-------cccc-chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 446677888888888887766655331 2333 55666 4677888876443332221 1122 234
Q ss_pred eEEEEcCCccHHHHHHHHhc---CC----CcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969 600 TVLDVGTGSGYTAACLGYMV---RP----HGKVYSLDHMEYLVNFSKENIRKNH 646 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLV---GP----~GrVtGIDISpeAVE~ARKNLKkaG 646 (687)
.++|||.|+|+++.-|.+.+ .| ..+++-||+|+.+.+.-+++++...
T Consensus 80 ~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 80 KLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred eEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 79999999999998876654 22 4789999999999999999998875
No 241
>PRK13699 putative methylase; Provisional
Probab=91.49 E-value=0.88 Score=45.82 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969 582 SFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646 (687)
Q Consensus 582 ~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG 646 (687)
.+...++... ..+|+.|||-=||||..+.+..++.. +.+|+|++++..+.|.++++...
T Consensus 151 ~l~~~~i~~~---s~~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 151 TSLQPLIESF---THPNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred HHHHHHHHHh---CCCCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHH
Confidence 3555555544 56899999999999977766555533 79999999999999999998754
No 242
>KOG4589|consensus
Probab=91.40 E-value=0.26 Score=50.53 Aligned_cols=38 Identities=37% Similarity=0.566 Sum_probs=35.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCH
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHME 632 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISp 632 (687)
+.|+.+|||+||..|.-+...-+.++|.|.|.|||+-.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 57899999999999999999999999999999999753
No 243
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=91.21 E-value=0.38 Score=48.86 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=42.7
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYM---VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654 (687)
Q Consensus 578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArL---VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR 654 (687)
+..|.-...+.+++. .+ +++.|+|+|.-.|..+..+|.+ +++.++|+|||++-..... +.++.... ..+
T Consensus 15 ~q~P~Dm~~~qeli~-~~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~----~~r 86 (206)
T PF04989_consen 15 IQYPQDMVAYQELIW-EL-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPM----SPR 86 (206)
T ss_dssp SS-HHHHHHHHHHHH-HH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--------TT
T ss_pred hcCHHHHHHHHHHHH-Hh-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccc----cCc
Confidence 445655555555543 23 4579999999999999888764 4457899999997544322 22222333 479
Q ss_pred EEEEEcCCC
Q psy14969 655 VNIMRTLPP 663 (687)
Q Consensus 655 I~LI~GDAe 663 (687)
|++++||..
T Consensus 87 I~~i~Gds~ 95 (206)
T PF04989_consen 87 ITFIQGDSI 95 (206)
T ss_dssp EEEEES-SS
T ss_pred eEEEECCCC
Confidence 999999964
No 244
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.82 E-value=0.29 Score=49.63 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=54.8
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----------
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------- 663 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------- 663 (687)
-+.+|++|+|+|+-.|.-+..+++.+++.+.|+|+|+.|--. + ..+.++++|..
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~-----~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------I-----PGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------C-----CCceEEeeeccCccHHHHHHH
Confidence 357899999999999999999999998878899999986421 1 23666777643
Q ss_pred ---CCCccEEEEEecCCCcC
Q psy14969 664 ---QQDASRVNISVEPQKSG 680 (687)
Q Consensus 664 ---daPFDLILVVfAP~K~g 680 (687)
..++|+|+...||--.|
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g 125 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSG 125 (205)
T ss_pred HcCCCCcceEEecCCCCcCC
Confidence 34579999888884443
No 245
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.02 E-value=0.73 Score=47.62 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=46.8
Q ss_pred cCCCCC--eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH---HcCCC-ccCCCcEEEEEcCCCC---
Q psy14969 594 KLKPGD--TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR---KNHAH-LLDEGVVNIMRTLPPQ--- 664 (687)
Q Consensus 594 dLkpG~--RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK---kaG~~-VaSsgRI~LI~GDAed--- 664 (687)
.+++|. +|||.-+|-|.-+..+|.. | ++|+++|.+|.+....+.-++ ..... .....++.++.++...
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~ 146 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR 146 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence 455654 8999999999999999976 4 489999999988666554443 32221 0113589999999764
Q ss_pred ---CCccEEEEEecCCCcC
Q psy14969 665 ---QDASRVNISVEPQKSG 680 (687)
Q Consensus 665 ---aPFDLILVVfAP~K~g 680 (687)
..||+|.. +|+-..
T Consensus 147 ~~~~s~DVVY~--DPMFp~ 163 (234)
T PF04445_consen 147 QPDNSFDVVYF--DPMFPE 163 (234)
T ss_dssp CHSS--SEEEE----S---
T ss_pred hcCCCCCEEEE--CCCCCC
Confidence 46787655 555443
No 246
>KOG2651|consensus
Probab=89.21 E-value=0.84 Score=50.88 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=39.4
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK 643 (687)
+..+-+.|.|||.|-||++.+|+-..+ -.|+|||-+..+.+.|++--+
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~rLdk 197 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQRLDK 197 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHHHHH
Confidence 344667899999999999999997764 589999999888888776433
No 247
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=89.09 E-value=2.3 Score=47.58 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=63.2
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH--HHHHcCCCccCCCcEEEEEcCCC------CC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE--NIRKNHAHLLDEGVVNIMRTLPP------QQ 665 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK--NLKkaG~~VaSsgRI~LI~GDAe------da 665 (687)
.++...+||-+|-|-|--+..+.+.= .-.+|+-+|.+|.|++.|++ .++..+-...+..|+.++..|+- ..
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 34567899999999998777776652 15799999999999999994 44444444566789999998864 34
Q ss_pred CccEEEEEecCCC
Q psy14969 666 DASRVNISVEPQK 678 (687)
Q Consensus 666 PFDLILVVfAP~K 678 (687)
-||.+++..--+.
T Consensus 365 ~fD~vIVDl~DP~ 377 (508)
T COG4262 365 MFDVVIVDLPDPS 377 (508)
T ss_pred cccEEEEeCCCCC
Confidence 6999998854333
No 248
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=89.09 E-value=1.2 Score=47.01 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhcCC-CCCeEEEEcCCc--cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969 583 FIASSLEPALLKLK-PGDTVLDVGTGS--GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR 659 (687)
Q Consensus 583 VvAlLLElLkedLk-pG~RVLDIGCGT--GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~ 659 (687)
...+....+. -. .=...||||||- --.+..+|+.+.|.++|+-+|++|-.+..|+.-+.... .++..++.
T Consensus 55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~ 127 (267)
T PF04672_consen 55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE
T ss_pred HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEe
Confidence 3445555552 22 235799999993 34678889988899999999999999999999887764 24688888
Q ss_pred cCCC
Q psy14969 660 TLPP 663 (687)
Q Consensus 660 GDAe 663 (687)
+|..
T Consensus 128 aD~r 131 (267)
T PF04672_consen 128 ADLR 131 (267)
T ss_dssp --TT
T ss_pred CCCC
Confidence 8864
No 249
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.96 E-value=1.8 Score=43.44 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=38.3
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCC-------CcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRP-------HGKVYSLDHMEYLVNFSKENIRKN 645 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP-------~GrVtGIDISpeAVE~ARKNLKka 645 (687)
.-+|+|+|.|+|.++.-+.+.+.. ..+++-||+|+.+.+.-++++...
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~ 73 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEH 73 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhh
Confidence 359999999999999998876642 258999999999999999988763
No 250
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.49 E-value=0.32 Score=50.69 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF 637 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ 637 (687)
.+|.+|||||+-||.+|-++.+... .+|+|||+.-..+.+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~ 117 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHW 117 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCH
Confidence 4688999999999999999998853 499999998766554
No 251
>KOG0024|consensus
Probab=87.66 E-value=1.4 Score=48.07 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=41.9
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.++.|.+||-+|+|+ |.+|...|+.++ ..+|+.+|+++..++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH
Confidence 678999999999996 888888899987 5799999999999999988
No 252
>KOG1227|consensus
Probab=87.30 E-value=0.24 Score=53.45 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCccHHHH-HHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC----CCCccEEE
Q psy14969 597 PGDTVLDVGTGSGYTAA-CLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP----QQDASRVN 671 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTA-aLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe----daPFDLIL 671 (687)
.+..|.|+=+|-||+|. .+.... ...|+++|.+|.+++.-+++++.+++ ..+..++.||-. ....|.|+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~V----~~r~~i~~gd~R~~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANNV----MDRCRITEGDNRNPKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcch----HHHHHhhhccccccCccccchhee
Confidence 46899999999999999 554443 35999999999999999999999987 455556666633 34466666
Q ss_pred EEecCC
Q psy14969 672 ISVEPQ 677 (687)
Q Consensus 672 VVfAP~ 677 (687)
...-|.
T Consensus 268 LGLlPS 273 (351)
T KOG1227|consen 268 LGLLPS 273 (351)
T ss_pred eccccc
Confidence 655554
No 253
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=86.97 E-value=2.3 Score=47.50 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=60.9
Q ss_pred CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRP---HGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP---~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
|+..++.++...|++.+ .+.+..+|+|--||||.+....++.++. ...++|.|+++.....|+-|+--+++
T Consensus 166 GEfyTP~~v~~liv~~l--~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi 239 (489)
T COG0286 166 GEFYTPREVSELIVELL--DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI 239 (489)
T ss_pred CccCChHHHHHHHHHHc--CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC
Confidence 67777888999999888 4567789999999999998888877753 26799999999999999999998887
No 254
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=86.95 E-value=1.7 Score=38.87 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=28.6
Q ss_pred EEcCCcc--HHHHHHH-HhcCCCcEEEEEeCCHHHHHHHHHH--HHHc
Q psy14969 603 DVGTGSG--YTAACLG-YMVRPHGKVYSLDHMEYLVNFSKEN--IRKN 645 (687)
Q Consensus 603 DIGCGTG--YLTAaLA-rLVGP~GrVtGIDISpeAVE~ARKN--LKka 645 (687)
|||+..| ..+..+. +..++.++|+++|.+|..++..+++ +.-.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6655553 2455688999999999999999998 5544
No 255
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=86.83 E-value=0.77 Score=45.64 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-------CC-CcEEEEEeCCHHHHHHHHH
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-------RP-HGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-------GP-~GrVtGIDISpeAVE~ARK 640 (687)
+.-+|+.+||+||-=+-.||-++ .+ ..+|+|.|+|+.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 34599999999996433332221 11 3599999999999999986
No 256
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=86.58 E-value=1 Score=42.30 Aligned_cols=50 Identities=6% Similarity=-0.065 Sum_probs=36.0
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----ccEEEEEecCC
Q psy14969 626 YSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----ASRVNISVEPQ 677 (687)
Q Consensus 626 tGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FDLILVVfAP~ 677 (687)
+|+|++++|++.|+++.+..+. ....++.++.||+..+| ||.|+..+.-.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~ 55 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR 55 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhh
Confidence 4899999999999987764321 01246899999987654 78887766443
No 257
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.75 E-value=0.73 Score=52.26 Aligned_cols=58 Identities=26% Similarity=0.186 Sum_probs=34.8
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEE-----eCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSL-----DHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL 661 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGI-----DISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD 661 (687)
..+||||||+|.+++.|...- |+++ |..+..++.|.++---+-+.++...|++|..+.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~ 181 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNA 181 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccc
Confidence 379999999999999988663 3333 344456666665411111123345666665544
No 258
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.74 E-value=2.4 Score=44.68 Aligned_cols=47 Identities=30% Similarity=0.443 Sum_probs=39.7
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy14969 595 LKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI 642 (687)
Q Consensus 595 LkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNL 642 (687)
..++.+|+-+|||+ |.+++.+++..+ ..+|+++|.++.-++.|++..
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhC
Confidence 44555999999997 888888888886 569999999999999998853
No 259
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=85.15 E-value=2.5 Score=46.11 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCC-cEEEEEcCCC------CCCccE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEG-VVNIMRTLPP------QQDASR 669 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsg-RI~LI~GDAe------daPFDL 669 (687)
.+-+|||.=+|||.-++.++..++...+|++-|+++++++..++|++-+++ .. ++.+...|+. ...||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~----~~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL----EDERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-----SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc----cCceEEEehhhHHHHhhhccccCCE
Confidence 455899999999999999999854346999999999999999999999998 33 7888888853 455887
Q ss_pred EEEE
Q psy14969 670 VNIS 673 (687)
Q Consensus 670 ILVV 673 (687)
|.+.
T Consensus 125 IDlD 128 (377)
T PF02005_consen 125 IDLD 128 (377)
T ss_dssp EEE-
T ss_pred EEeC
Confidence 7654
No 260
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=84.79 E-value=2.3 Score=43.70 Aligned_cols=43 Identities=16% Similarity=-0.013 Sum_probs=36.3
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
+|+|+-||.|.++..+.++.. -.|+++|+++.+++..++|...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~ 44 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPN 44 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCC
Confidence 699999999999988877642 3689999999999998888754
No 261
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=83.38 E-value=1.6 Score=41.16 Aligned_cols=46 Identities=17% Similarity=0.072 Sum_probs=32.4
Q ss_pred HHHHHHHHhhh--cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCC
Q psy14969 583 FIASSLEPALL--KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHM 631 (687)
Q Consensus 583 VvAlLLElLke--dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDIS 631 (687)
+++.++++... ...+.....|||||.|.+...|.+..- .-+|+|.-
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy---~G~GiD~R 89 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY---PGWGIDAR 89 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC---Cccccccc
Confidence 56666665432 112345799999999999999987754 56788864
No 262
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=82.79 E-value=1.3 Score=45.82 Aligned_cols=40 Identities=43% Similarity=0.659 Sum_probs=36.1
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHH
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEY 633 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpe 633 (687)
.+++|++|+|+=.|.||+|..++..++|+|.|+++-..+.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 5789999999999999999999999999999999865543
No 263
>KOG3115|consensus
Probab=82.40 E-value=1.2 Score=46.35 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=43.6
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
-.+.|||||-|.+...|+-+. |+--+.|+||--..-++.+.++..+..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~ 109 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRR 109 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhc
Confidence 468999999999999999998 677999999999999999999998874
No 264
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=82.37 E-value=4.7 Score=42.34 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=32.3
Q ss_pred CCeEEEEcCCccH----HHHHHHHhcC----CCcEEEEEeCCHHHHHHHHH
Q psy14969 598 GDTVLDVGTGSGY----TAACLGYMVR----PHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 598 G~RVLDIGCGTGY----LTAaLArLVG----P~GrVtGIDISpeAVE~ARK 640 (687)
.-+|+-+||+||- +|..|.+..+ ..-+|+|.|+|..+++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 5699999999993 2333334442 24789999999999999986
No 265
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=81.12 E-value=3.8 Score=42.96 Aligned_cols=47 Identities=28% Similarity=0.448 Sum_probs=40.3
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN 641 (687)
.+.++.+||.+|+|+ |..++.+|+..+ ..+|++++.+++..+.+++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 577899999999998 889999999875 34699999999998888765
No 266
>KOG2360|consensus
Probab=80.79 E-value=1.9 Score=47.88 Aligned_cols=63 Identities=17% Similarity=0.339 Sum_probs=54.2
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL 661 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD 661 (687)
+..+|.+|+|+.|-.|.-|..+|....+.|+++|.|.++.-++.-++-++..|. ..+..+.+|
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-----~~~~~~~~d 272 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-----SIVESVEGD 272 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-----Ccccccccc
Confidence 677889999999999999999999887789999999999999999999999886 234444555
No 267
>KOG2198|consensus
Probab=80.75 E-value=4.1 Score=45.03 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=59.7
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHHHHcCC--CccCCCcEEEEEcC-------
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRP---HGKVYSLDHMEYLVNFSKENIRKNHA--HLLDEGVVNIMRTL------- 661 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP---~GrVtGIDISpeAVE~ARKNLKkaG~--~VaSsgRI~LI~GD------- 661 (687)
.+++|++|||+++..|.-|+.|.+.+-+ .|.|++=|+++.-+..-.+.+....- ..+..+.+.+..+.
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 7899999999999999999988877632 35899999999988887777755543 11122223222222
Q ss_pred CCCCCccEEEEEecCCCc
Q psy14969 662 PPQQDASRVNISVEPQKS 679 (687)
Q Consensus 662 AedaPFDLILVVfAP~K~ 679 (687)
....-||.|++.+ ||-.
T Consensus 232 ~~~~~fDrVLvDV-PCS~ 248 (375)
T KOG2198|consen 232 KEQLKFDRVLVDV-PCSG 248 (375)
T ss_pred hhhhhcceeEEec-ccCC
Confidence 2445699999987 5543
No 268
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=80.29 E-value=2.6 Score=44.51 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=31.9
Q ss_pred CCeEEEEcCCccHHHHHH----HHhcC---CCcEEEEEeCCHHHHHHHHHH
Q psy14969 598 GDTVLDVGTGSGYTAACL----GYMVR---PHGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaL----ArLVG---P~GrVtGIDISpeAVE~ARKN 641 (687)
.-+|+..||+||-=+-.| .+..+ ...+|+|.|+++.+++.|++-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 359999999999533222 23221 135799999999999999874
No 269
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.05 E-value=3.9 Score=43.47 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=42.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCccCCCcEEEEEcC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN-HAHLLDEGVVNIMRTL 661 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka-G~~VaSsgRI~LI~GD 661 (687)
+.-++||||+|--.+=-.+....- ..+.+|-|+++..++.|+..+..+ ++ ...|++....
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l----~~~I~lr~qk 138 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGL----ERAIRLRRQK 138 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcch----hhheeEEecc
Confidence 456899999986655434433321 478999999999999999999988 55 3445554433
No 270
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=78.00 E-value=5 Score=38.82 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=38.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------CCccEEEEE--ecCCCcCcc
Q psy14969 624 KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------QDASRVNIS--VEPQKSGEI 682 (687)
Q Consensus 624 rVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------aPFDLILVV--fAP~K~gEl 682 (687)
+|+|+||.+++++.+++++++.+. ..++.++..+-+. .++|.++.. |-|-.+-++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i 64 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL----EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSI 64 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTS
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC----CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCC
Confidence 599999999999999999999987 5689999877431 256776665 666555444
No 271
>KOG1709|consensus
Probab=75.08 E-value=22 Score=37.78 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=60.6
Q ss_pred cCCccc--CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCcc
Q psy14969 573 ENCSYL--NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650 (687)
Q Consensus 573 G~GqTI--SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~Va 650 (687)
+.|..+ -.|.|++....+ ..+|.+||.||-|-|.....+.+.- |. +-+-||..|+.++. ++..++ .
T Consensus 79 ~k~VMm~WEtpiMha~A~ai----~tkggrvLnVGFGMgIidT~iQe~~-p~-~H~IiE~hp~V~kr----mr~~gw--~ 146 (271)
T KOG1709|consen 79 GKGVMMRWETPIMHALAEAI----STKGGRVLNVGFGMGIIDTFIQEAP-PD-EHWIIEAHPDVLKR----MRDWGW--R 146 (271)
T ss_pred cchhhhhhhhHHHHHHHHHH----hhCCceEEEeccchHHHHHHHhhcC-Cc-ceEEEecCHHHHHH----HHhccc--c
Confidence 344433 356666655433 2578999999999999988887663 43 67789999999864 555666 3
Q ss_pred CCCcEEEEEcCC-------CCCCccEEEEE
Q psy14969 651 DEGVVNIMRTLP-------PQQDASRVNIS 673 (687)
Q Consensus 651 SsgRI~LI~GDA-------edaPFDLILVV 673 (687)
..+++.++.|.- ++..||.|...
T Consensus 147 ek~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 147 EKENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred cccceEEEecchHhhhccccccCcceeEee
Confidence 356677766653 23448888765
No 272
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=74.52 E-value=1.1 Score=46.23 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=34.4
Q ss_pred CCeEEEEcCCccHHHHH-HHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 598 GDTVLDVGTGSGYTAAC-LGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAa-LArLVGP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
..++||.|+|-|..|-- |...+. +|-.||..+..++.|++.+..
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~---~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFD---EVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-S---EEEEEES-HHHHHHHHHHTCC
T ss_pred cceEEecccccchhHHHHHHHhcC---EeEEeccCHHHHHHHHHHhcc
Confidence 46999999999999964 455554 899999999999999987666
No 273
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=73.27 E-value=34 Score=36.14 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI 658 (687)
+...++.+++-.+...--.|++||-||=.- ..+.++|.. ++..+|+.+|+++.+++.-++..++.|+ .+..+
T Consensus 26 T~eT~~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~ 97 (243)
T PF01861_consen 26 TPETTLRRAALMAERGDLEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL------PIEAV 97 (243)
T ss_dssp -HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE
T ss_pred cHHHHHHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEE
Confidence 344444444433322224689999999543 344444433 3457999999999999999999999998 46666
Q ss_pred EcCCC-------CCCccEEE
Q psy14969 659 RTLPP-------QQDASRVN 671 (687)
Q Consensus 659 ~GDAe-------daPFDLIL 671 (687)
..|.. ...||.++
T Consensus 98 ~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 98 HYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp ---TTS---TTTSS-BSEEE
T ss_pred EecccccCCHHHhcCCCEEE
Confidence 66633 24478664
No 274
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=72.49 E-value=11 Score=43.10 Aligned_cols=84 Identities=13% Similarity=0.171 Sum_probs=52.7
Q ss_pred CeEEEEcCCccHHHHHHHHhc------CC-----CcEEEEEeCCH---HH-----------HHHHHHHHHHcCCC-----
Q psy14969 599 DTVLDVGTGSGYTAACLGYMV------RP-----HGKVYSLDHME---YL-----------VNFSKENIRKNHAH----- 648 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLV------GP-----~GrVtGIDISp---eA-----------VE~ARKNLKkaG~~----- 648 (687)
-+|||+|=|+|+..++..+.. .| .-+++++|..| +- .+.+.+-+..+...
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 589999999999988877655 12 35789999754 22 22222322222110
Q ss_pred --ccCCC--cEEEEEcCCCC------CCccEEEEE-ecCCCcCcc
Q psy14969 649 --LLDEG--VVNIMRTLPPQ------QDASRVNIS-VEPQKSGEI 682 (687)
Q Consensus 649 --VaSsg--RI~LI~GDAed------aPFDLILVV-fAP~K~gEl 682 (687)
....+ ++++..||+.+ ..+|.++.. |+|.|-.|+
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~ 183 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDM 183 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhh
Confidence 11123 45577788642 348999998 899887765
No 275
>KOG3987|consensus
Probab=71.66 E-value=0.69 Score=48.33 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=55.1
Q ss_pred ccCCc-ccCcHHHHHHHHHHhhhcC-CCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCc
Q psy14969 572 LENCS-YLNSPSFIASSLEPALLKL-KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL 649 (687)
Q Consensus 572 IG~Gq-TISaP~VvAlLLElLkedL-kpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~V 649 (687)
+|.|. .+-.|...++++..-.+.- +.+.++||+|+|.|-+|..|+-.+. .|++-|.|..|... +++.++.|
T Consensus 85 lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~r----L~kk~ynV 157 (288)
T KOG3987|consen 85 LGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDR----LKKKNYNV 157 (288)
T ss_pred cccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHH----HhhcCCce
Confidence 45553 4566776676664421111 2346999999999999999987775 69999999888764 44445422
Q ss_pred cCCCcEEEEEcCCCCCCccEEE
Q psy14969 650 LDEGVVNIMRTLPPQQDASRVN 671 (687)
Q Consensus 650 aSsgRI~LI~GDAedaPFDLIL 671 (687)
+..+.....+..||+|.
T Consensus 158 -----l~~~ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 158 -----LTEIEWLQTDVKLDLIL 174 (288)
T ss_pred -----eeehhhhhcCceeehHH
Confidence 22233333445555554
No 276
>KOG4058|consensus
Probab=70.95 E-value=7.1 Score=39.37 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=45.4
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
++.++.++ .-.+..+.+|+|+|-|.+....++... -.-+|+|.++.++.+++-+.-+.+.
T Consensus 61 v~nVLSll--~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~ 120 (199)
T KOG4058|consen 61 VENVLSLL--RGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGC 120 (199)
T ss_pred HHHHHHHc--cCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhc
Confidence 34445554 234546899999999999888877652 2568999999999999988777775
No 277
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=70.71 E-value=20 Score=33.94 Aligned_cols=45 Identities=40% Similarity=0.548 Sum_probs=35.1
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+.++.+||.+|+|+ |..++.+++..+ .+|++++.+++..+.++.
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 347889999999986 666777777765 589999999887776643
No 278
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=70.52 E-value=9.8 Score=41.51 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=38.4
Q ss_pred cCCCCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 594 dLkpG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKN 641 (687)
.++||++|+-+|.| .|.++.-+|+.++ ++|+++|++++-.+.|++-
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence 68899999999887 4567777788765 6999999999998888764
No 279
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=70.49 E-value=10 Score=39.63 Aligned_cols=40 Identities=15% Similarity=0.349 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcC----CCcEEEEEeCCHHH
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVR----PHGKVYSLDHMEYL 634 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVG----P~GrVtGIDISpeA 634 (687)
+.+...++|.|||.|.++..+++.+. +...++.||....-
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R 59 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNR 59 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccc
Confidence 56778999999999999999999883 24588999986543
No 280
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=70.05 E-value=17 Score=36.13 Aligned_cols=45 Identities=33% Similarity=0.516 Sum_probs=36.1
Q ss_pred cCCCCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+.++.+||..|+| .|..++.+|+..+ .+|++++.++...+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 46788899998876 4788888888865 579999999988877644
No 281
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=67.00 E-value=22 Score=32.05 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=26.9
Q ss_pred HHHHHHHhhh--cCCCCCeEEEEcCCccHHH-HHHHHhcCCCcEEEEEeCCHH
Q psy14969 584 IASSLEPALL--KLKPGDTVLDVGTGSGYTA-ACLGYMVRPHGKVYSLDHMEY 633 (687)
Q Consensus 584 vAlLLElLke--dLkpG~RVLDIGCGTGYLT-AaLArLVGP~GrVtGIDISpe 633 (687)
+...+++... .+..+++||-||+-|||-. ..++.+++.++..+||-..+.
T Consensus 23 V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk~ 75 (78)
T PF12242_consen 23 VENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEKP 75 (78)
T ss_dssp HHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE----
T ss_pred HHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeeccC
Confidence 3444444432 3344589999999999954 456666566678888876543
No 282
>KOG2940|consensus
Probab=65.98 E-value=11 Score=40.21 Aligned_cols=67 Identities=12% Similarity=0.011 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCCC-----ccEEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQD-----ASRVN 671 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAedaP-----FDLIL 671 (687)
.-..++|||||-|+++..+.... -++++-+|.+-.|++.++..-. .++ .+....+|.+.++ +|+|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i------~~~~~v~DEE~Ldf~ens~DLii 142 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI------ETSYFVGDEEFLDFKENSVDLII 142 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce------EEEEEecchhcccccccchhhhh
Confidence 34579999999999998775442 2489999999999998876422 222 3444555554433 56654
Q ss_pred E
Q psy14969 672 I 672 (687)
Q Consensus 672 V 672 (687)
.
T Consensus 143 s 143 (325)
T KOG2940|consen 143 S 143 (325)
T ss_pred h
Confidence 4
No 283
>PRK06194 hypothetical protein; Provisional
Probab=65.72 E-value=56 Score=32.28 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.+++||-.|. +|.++..+++.+ ..+.+|+.+|.+.+.++.....+...+. ++.++.+|..+
T Consensus 5 ~~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 5 AGKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA------EVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC------eEEEEECCCCCHHHHHHHHHHH
Confidence 3578998885 466666666543 3346899999998877666665554433 56777777643
Q ss_pred ----CCccEEEEEecCC
Q psy14969 665 ----QDASRVNISVEPQ 677 (687)
Q Consensus 665 ----aPFDLILVVfAP~ 677 (687)
.+.|.++..++..
T Consensus 78 ~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 78 LERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 2468776665543
No 284
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.64 E-value=67 Score=30.54 Aligned_cols=59 Identities=7% Similarity=-0.053 Sum_probs=39.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
.+.++|-+|+ +|.++..+++.+ ..+.+|+.++.++.-++.+.+.+...+. ++.++..|.
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~ 63 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT------EVRGYAANV 63 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------ceEEEEcCC
Confidence 4678999996 456666666543 2345899999998877777666665443 555565553
No 285
>KOG1269|consensus
Probab=64.30 E-value=7.3 Score=42.62 Aligned_cols=80 Identities=23% Similarity=0.200 Sum_probs=58.1
Q ss_pred hcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcC-----CCCCCc
Q psy14969 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTL-----PPQQDA 667 (687)
Q Consensus 593 edLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GD-----AedaPF 667 (687)
....++..++|+|||-|..+..++..- ...++|++.++.-+..+........+ ..+..++.++ -++..|
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l----~~k~~~~~~~~~~~~fedn~f 179 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYL----DNKCNFVVADFGKMPFEDNTF 179 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHh----hhhcceehhhhhcCCCCcccc
Confidence 357788899999999999999998774 35899999999988888877776665 3333333333 445567
Q ss_pred cEEEEEecCCC
Q psy14969 668 SRVNISVEPQK 678 (687)
Q Consensus 668 DLILVVfAP~K 678 (687)
|.+.+.-..+.
T Consensus 180 d~v~~ld~~~~ 190 (364)
T KOG1269|consen 180 DGVRFLEVVCH 190 (364)
T ss_pred CcEEEEeeccc
Confidence 77766654443
No 286
>PRK06949 short chain dehydrogenase; Provisional
Probab=64.06 E-value=74 Score=30.64 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.+++||-.| |+|.++..+++.+. ...+|++++.+++.++.....+...+ .++.++.+|..+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 80 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG------GAAHVVSLDVTDYQSIKAAVAHA 80 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHHHHHHHH
Confidence 578899999 56777777776553 34589999999988776666665443 256666666542
Q ss_pred ----CCccEEEEEecCC
Q psy14969 665 ----QDASRVNISVEPQ 677 (687)
Q Consensus 665 ----aPFDLILVVfAP~ 677 (687)
.++|.++..+...
T Consensus 81 ~~~~~~~d~li~~ag~~ 97 (258)
T PRK06949 81 ETEAGTIDILVNNSGVS 97 (258)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 2578776665543
No 287
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=63.92 E-value=29 Score=34.69 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=42.3
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
.-.+++.|||-=+|+|....+..++.. .++|+|+++..++.+.+++.....
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r---~~ig~e~~~~y~~~~~~r~~~~~~ 269 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR---RFIGIEINPEYVEVALKRLQEGLN 269 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC---ceEEEecCHHHHHHHHHHHHhhcc
Confidence 467899999999999977666555543 799999999999999999997643
No 288
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=63.53 E-value=20 Score=39.54 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=34.8
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK 643 (687)
.+.++++||-|.+| |..+..+... +| .+|++||++|.-+...+=++.
T Consensus 32 ~i~~~d~vl~ItSa-G~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 32 NIGPDDRVLTITSA-GCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCCeEEEEccC-CchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHH
Confidence 68899999999876 6676666433 23 599999999987766554433
No 289
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=63.03 E-value=18 Score=37.27 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=36.5
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+++|.+||-+|+|+ |..++.+|+..+ .+|+++|.+++-++.|++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 577899999999976 777777888775 479999999988877754
No 290
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=62.57 E-value=18 Score=40.23 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=53.8
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCCccEEE
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQDASRVN 671 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daPFDLIL 671 (687)
+.+|||.=+|||.-++.+|...+ .-+|+.=|++|.+++.+++|++.+.. .....+..|+. ...||.|.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~-----~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSG-----EDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCc-----ccceeecchHHHHHHhcCCCccEEe
Confidence 67999999999999999998875 33899999999999999999999832 23344444542 25567665
Q ss_pred EE
Q psy14969 672 IS 673 (687)
Q Consensus 672 VV 673 (687)
+.
T Consensus 127 iD 128 (380)
T COG1867 127 ID 128 (380)
T ss_pred cC
Confidence 43
No 291
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=62.32 E-value=30 Score=35.61 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=34.3
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
...+|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-++.|++
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH
Confidence 345789999998863 666667777765 2379999999988887764
No 292
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=62.10 E-value=38 Score=33.94 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------CCc
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------QDA 667 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------aPF 667 (687)
.+++||-.| |+|+++..+++.+ ..+.+|++++.++.............+. ..++.++.+|..+ ..+
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGA----KERLHLFKANLLEEGSFDSVVDGC 77 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCC----CCceEEEeccccCcchHHHHHcCC
Confidence 357899888 5899998887765 2235898888775432222211111111 2367788887653 236
Q ss_pred cEEEEEecCC
Q psy14969 668 SRVNISVEPQ 677 (687)
Q Consensus 668 DLILVVfAP~ 677 (687)
|.|+-.+++.
T Consensus 78 d~Vih~A~~~ 87 (322)
T PLN02662 78 EGVFHTASPF 87 (322)
T ss_pred CEEEEeCCcc
Confidence 8777776654
No 293
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=61.76 E-value=17 Score=41.48 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=36.5
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 595 LKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 595 LkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
..++.+|+-+|+|. |..++..|+..| +.|+++|.+++..+.|++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 35789999999996 666677788776 489999999999888776
No 294
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=61.73 E-value=76 Score=30.61 Aligned_cols=61 Identities=11% Similarity=-0.020 Sum_probs=40.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
.++++||=.|+ +|.++..+++.+. .+.+|++++.+++.++...+.++..+. .++.++..|.
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~d~ 71 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-----PQPAIIPLDL 71 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-----CCceEEEecc
Confidence 36889999994 6777777665542 245999999998877666666665442 2444554443
No 295
>PRK06181 short chain dehydrogenase; Provisional
Probab=61.53 E-value=77 Score=30.78 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=46.6
Q ss_pred CeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------------
Q psy14969 599 DTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------------- 664 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------------- 664 (687)
.+||-.|+ +|.++..+++.+ ..+.+|++++.++.-.+...+.+...+ .++.++.+|..+
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG------GEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46888884 566777666543 334699999999877666665555543 256666666543
Q ss_pred --CCccEEEEEecCCC
Q psy14969 665 --QDASRVNISVEPQK 678 (687)
Q Consensus 665 --aPFDLILVVfAP~K 678 (687)
.+.|.++-.+.+..
T Consensus 75 ~~~~id~vi~~ag~~~ 90 (263)
T PRK06181 75 RFGGIDILVNNAGITM 90 (263)
T ss_pred HcCCCCEEEECCCccc
Confidence 25687766655443
No 296
>PRK07063 short chain dehydrogenase; Provisional
Probab=61.42 E-value=86 Score=30.49 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.+++||-.|++ |.++..+++. +..+.+|+.++.+++.++...+.+...+. ..++.++..|..+
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA----GARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC----CceEEEEEccCCCHHHHHHHHHHH
Confidence 46789999975 4555555554 33356899999999888777777765322 2356667666542
Q ss_pred ----CCccEEEEEecC
Q psy14969 665 ----QDASRVNISVEP 676 (687)
Q Consensus 665 ----aPFDLILVVfAP 676 (687)
.++|.++-.+..
T Consensus 81 ~~~~g~id~li~~ag~ 96 (260)
T PRK07063 81 EEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHhCCCcEEEECCCc
Confidence 257777665543
No 297
>PRK05867 short chain dehydrogenase; Provisional
Probab=61.07 E-value=75 Score=30.87 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.++++|-.|+++| ++..+++. +..+.+|+.++.+++.++...+.++..+ .++.++..|..+
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG------GKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHHH
Confidence 4788999997655 55555544 3334689999999887777666665543 255566666432
Q ss_pred ----CCccEEEEEecC
Q psy14969 665 ----QDASRVNISVEP 676 (687)
Q Consensus 665 ----aPFDLILVVfAP 676 (687)
.+.|.++..+..
T Consensus 81 ~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 81 TAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHhCCCCEEEECCCC
Confidence 367876655543
No 298
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=60.55 E-value=97 Score=30.06 Aligned_cols=73 Identities=10% Similarity=-0.018 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.+++||-.|. +|.++..+++.+ ..+.+|+.++.++..++...+.++..+. ++.++..|..+
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~------~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL------SAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc------eEEEEEccCCCHHHHHHHHHHH
Confidence 4789999994 677777776654 2346899999998877766666665443 45666666542
Q ss_pred ----CCccEEEEEecC
Q psy14969 665 ----QDASRVNISVEP 676 (687)
Q Consensus 665 ----aPFDLILVVfAP 676 (687)
.+.|.++..++.
T Consensus 82 ~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 82 EAEIGPIDILVNNAGM 97 (255)
T ss_pred HHhcCCCCEEEECCCC
Confidence 346777666544
No 299
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=60.33 E-value=29 Score=36.27 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=34.4
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+++|++||-+|+|. |..++.+|+..+ ..+|+++|.+++-.+.|++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH
Confidence 578899999999863 556666777765 2279999999888777644
No 300
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=57.41 E-value=25 Score=36.44 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHH
Q psy14969 595 LKPGDTVLDVGTGS-GYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 595 LkpG~RVLDIGCGT-GYLTAaLArL-VGP~GrVtGIDISpeAVE~ARK 640 (687)
+++|++||-+|+|. |.+++.+++. .+ ..+|+++|.++.-++.|+.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhh
Confidence 57899999999864 3344455554 32 3479999999888877754
No 301
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=57.05 E-value=1.1e+02 Score=29.14 Aligned_cols=74 Identities=8% Similarity=-0.036 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.+++||-.|+ +|.++..+++.+ ..+.+|++++.++..+..+...+...+. ++.++.+|..+
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~------~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG------KARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------eEEEEECCCCCHHHHHHHHHHH
Confidence 4678998885 577777766543 2235899999997766665555554432 46777777543
Q ss_pred ----CCccEEEEEecCC
Q psy14969 665 ----QDASRVNISVEPQ 677 (687)
Q Consensus 665 ----aPFDLILVVfAP~ 677 (687)
.++|.++..++..
T Consensus 78 ~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 78 VEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 2577766655443
No 302
>PRK06172 short chain dehydrogenase; Provisional
Probab=57.01 E-value=68 Score=30.96 Aligned_cols=60 Identities=17% Similarity=0.048 Sum_probs=40.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|++ |.++..+++. ...+.+|+.++.+++-++.+.+.+...+ .++.++.+|..
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~ 66 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG------GEALFVACDVT 66 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCC
Confidence 46789999965 5555555544 3334689999999887776666666544 35667777654
No 303
>PLN02740 Alcohol dehydrogenase-like
Probab=56.85 E-value=30 Score=36.33 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=33.8
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.+++-.+.|++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH
Confidence 578899999999763 455555666654 2269999999888877754
No 304
>PRK07326 short chain dehydrogenase; Provisional
Probab=56.52 E-value=1e+02 Score=29.28 Aligned_cols=74 Identities=11% Similarity=-0.028 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.+.+||-+|. +|.++..+++.+ ..+.+|++++.++.......+.+... .++.++.+|..+
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-------GNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-------CcEEEEEccCCCHHHHHHHHHHH
Confidence 4678999994 677777776654 23458999999987665555544332 256666666442
Q ss_pred ----CCccEEEEEecCCC
Q psy14969 665 ----QDASRVNISVEPQK 678 (687)
Q Consensus 665 ----aPFDLILVVfAP~K 678 (687)
.++|.|+..+.+..
T Consensus 77 ~~~~~~~d~vi~~ag~~~ 94 (237)
T PRK07326 77 VAAFGGLDVLIANAGVGH 94 (237)
T ss_pred HHHcCCCCEEEECCCCCC
Confidence 25787776655543
No 305
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=56.42 E-value=73 Score=30.84 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=41.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|+ +|.++..+++.+ ..+.+|+.++.+++.++...+.++..+. ++.++.+|..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dl~ 70 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG------AAEALAFDIA 70 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC------ceEEEEccCC
Confidence 5788999995 566666666543 3356999999998877766666665442 4666666643
No 306
>KOG1562|consensus
Probab=55.27 E-value=23 Score=38.89 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC-------CCCC
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP-------PQQD 666 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA-------edaP 666 (687)
.+.+.++||-||-|-|-.....++. ..-+.+.-+|++...++..++.++..... ....++.+..||+ ..-|
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHHHHHHhccCC
Confidence 3557789999999999887776665 23458999999999999999999876432 4567899999985 3678
Q ss_pred ccEEEEE-ecCCCcCcccc
Q psy14969 667 ASRVNIS-VEPQKSGEIKF 684 (687)
Q Consensus 667 FDLILVV-fAP~K~gEl~~ 684 (687)
||+|++. -.|...++-+|
T Consensus 196 ~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceEEEEecCCccchHHHHH
Confidence 9999886 45555555444
No 307
>PRK06914 short chain dehydrogenase; Provisional
Probab=54.65 E-value=1.4e+02 Score=29.45 Aligned_cols=62 Identities=5% Similarity=-0.139 Sum_probs=40.1
Q ss_pred CCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 598 GDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
+.++|-.|+ +|.++..+++. +..+.+|++++.+++..+...+.+...+. ..++.++.+|..+
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d 65 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL----QQNIKVQQLDVTD 65 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCceeEEecCCCC
Confidence 467888895 56666666654 33346899999988776665555554433 3456777776543
No 308
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=54.05 E-value=1.1e+02 Score=32.09 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCccH--HHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC------CCC
Q psy14969 596 KPGDTVLDVGTGSGY--TAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP------QQD 666 (687)
Q Consensus 596 kpG~RVLDIGCGTGY--LTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe------daP 666 (687)
-+.+.++++.++.|. .|..||.+. ...|+++.|-.++......++.+...+. .+.++|+.|+++ ...
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~----~~~vEfvvg~~~e~~~~~~~~ 115 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL----SDVVEFVVGEAPEEVMPGLKG 115 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc----cccceEEecCCHHHHHhhccC
Confidence 356789999776443 344444332 1358999999999988888899988876 456788888853 234
Q ss_pred ccEEEEEecC
Q psy14969 667 ASRVNISVEP 676 (687)
Q Consensus 667 FDLILVVfAP 676 (687)
.|.+++.+.+
T Consensus 116 iDF~vVDc~~ 125 (218)
T PF07279_consen 116 IDFVVVDCKR 125 (218)
T ss_pred CCEEEEeCCc
Confidence 7888777653
No 309
>PRK06138 short chain dehydrogenase; Provisional
Probab=52.88 E-value=1.3e+02 Score=28.76 Aligned_cols=73 Identities=10% Similarity=-0.026 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.++++|-.|+ +|.++..+++.+ ..+.+|++++.+++..+.....+. . ..++.++.+|..+
T Consensus 4 ~~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~------~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 4 AGRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A------GGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c------CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4678999997 466666666543 334689999999876665555444 2 2356777777543
Q ss_pred ----CCccEEEEEecCC
Q psy14969 665 ----QDASRVNISVEPQ 677 (687)
Q Consensus 665 ----aPFDLILVVfAP~ 677 (687)
.++|.++-.+...
T Consensus 76 ~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 76 AARWGRLDVLVNNAGFG 92 (252)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 2678776655543
No 310
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=52.74 E-value=1.8e+02 Score=27.88 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.+++||=.| |+|+++..+++.+ ..+.+|++++.++...+.....++..+. ++.++.+|..+
T Consensus 3 ~~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dl~~~~~~~~~~~~~ 75 (258)
T PRK12429 3 KGKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG------KAIGVAMDVTDEEAINAGIDYA 75 (258)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC------cEEEEEcCCCCHHHHHHHHHHH
Confidence 356888888 4678888777754 3345899999998877776666665443 56666666442
Q ss_pred ----CCccEEEEEecC
Q psy14969 665 ----QDASRVNISVEP 676 (687)
Q Consensus 665 ----aPFDLILVVfAP 676 (687)
.+.|.++..++.
T Consensus 76 ~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 76 VETFGGVDILVNNAGI 91 (258)
T ss_pred HHHcCCCCEEEECCCC
Confidence 257877665543
No 311
>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....
Probab=52.70 E-value=8.3 Score=32.10 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=27.0
Q ss_pred HHHHHHHHhccEEEEEeCCeeccccchhhh
Q psy14969 237 EDLIEEMIKNQVFCIKLGDIVGCDFCGKQL 266 (687)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (687)
...+++|.++..|+...+|.|-|-+||..|
T Consensus 17 ~~~~~~LA~aGFyy~~~~d~v~C~~C~~~l 46 (70)
T PF00653_consen 17 PVSPEKLARAGFYYTGTGDRVRCFYCGLEL 46 (70)
T ss_dssp SSHHHHHHHTTEEEESSTTEEEETTTTEEE
T ss_pred CCCHHHHHHCCCEEcCCCCEEEEeccCCEE
Confidence 346789999999999999999999999876
No 312
>KOG2920|consensus
Probab=52.55 E-value=11 Score=40.51 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHH
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLV 635 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAV 635 (687)
.-.|++|||+|||+|.....+..... ..|...|++.+.+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhhcc--ceeeeEecchhhe
Confidence 34789999999999998887776542 4788899888877
No 313
>KOG1098|consensus
Probab=52.43 E-value=13 Score=43.97 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=34.9
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCH
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHME 632 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISp 632 (687)
-+.++..|||+||..|.-..+.++.++..+-|+|||+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 467899999999999999999999998788999999765
No 314
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=52.34 E-value=23 Score=36.98 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=24.1
Q ss_pred HHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCH
Q psy14969 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHME 632 (687)
Q Consensus 584 vAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISp 632 (687)
+..+++.+. ...++..|-|.|||.+-++..+. ..-+|+..|..+
T Consensus 60 vd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva 103 (219)
T PF05148_consen 60 VDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA 103 (219)
T ss_dssp HHHHHHHHC-TS-TTS-EEEES-TT-HHHHH------S---EEEEESS-
T ss_pred HHHHHHHHH-hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC
Confidence 345566663 23445799999999998875543 223699999764
No 315
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=52.30 E-value=58 Score=32.65 Aligned_cols=46 Identities=26% Similarity=0.219 Sum_probs=32.1
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
...++++||-+|+|+ |.+++.+|+..+ ...|+++|.++.-.+.|++
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS 163 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH
Confidence 345889999998763 555566666654 2248999998887776654
No 316
>PRK05854 short chain dehydrogenase; Provisional
Probab=52.19 E-value=1.6e+02 Score=30.27 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCccHHHHHHHH-hcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGY-MVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLAr-LVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|+++| ++..+++ ++..+.+|+.+..+++-.+.+.+.+....- ..++.++..|..
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~----~~~v~~~~~Dl~ 75 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP----DAKLSLRALDLS 75 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEEecCC
Confidence 4678998897665 4444444 333456899999998877777766654321 235666666643
No 317
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.91 E-value=1.5e+02 Score=28.43 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+.++|-.| |+|.++..+++.+ ..+.+|+.++.++...+.....+...+ .++.++..|..
T Consensus 6 ~~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~ 66 (239)
T PRK07666 6 QGKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG------VKVVIATADVS 66 (239)
T ss_pred CCCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------CeEEEEECCCC
Confidence 356889899 4677887777653 345699999999876665555554433 35666666643
No 318
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=51.81 E-value=69 Score=33.13 Aligned_cols=74 Identities=11% Similarity=0.008 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------CC
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------QD 666 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------aP 666 (687)
..+++||-.| |+|+++..+++.+. .+.+|++++.++.-.+.....+.. ..++.++.+|..+ ..
T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-------GDRLRLFRADLQEEGSFDEAVKG 79 (353)
T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-------CCeEEEEECCCCCHHHHHHHHcC
Confidence 4578999999 58999988887653 235899998876533322221111 2357777777543 23
Q ss_pred ccEEEEEecCC
Q psy14969 667 ASRVNISVEPQ 677 (687)
Q Consensus 667 FDLILVVfAP~ 677 (687)
+|.|+-.+++.
T Consensus 80 ~d~Vih~A~~~ 90 (353)
T PLN02896 80 CDGVFHVAASM 90 (353)
T ss_pred CCEEEECCccc
Confidence 67776666553
No 319
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.73 E-value=1.2e+02 Score=29.33 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|+ +|+++..+++.+ ..+.+|+.++.+++..+.+.+.+...+. ++.++.+|..
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dl~ 66 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG------KAIGVAMDVT 66 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc------eEEEEECCCC
Confidence 4678887775 567776666543 3346899999999877777777765442 5666777754
No 320
>PRK05650 short chain dehydrogenase; Provisional
Probab=51.11 E-value=1.7e+02 Score=28.87 Aligned_cols=71 Identities=10% Similarity=-0.095 Sum_probs=44.8
Q ss_pred eEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------------
Q psy14969 600 TVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ-------------- 664 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed-------------- 664 (687)
+||-.|+ +|.++..+++.+ ..+.+|+.++.+++-.+.+.+.+...+. ++.++.+|..+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~------~~~~~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG------DGFYQRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 6787885 555666665543 3346899999998877766666655442 55666666532
Q ss_pred -CCccEEEEEecCC
Q psy14969 665 -QDASRVNISVEPQ 677 (687)
Q Consensus 665 -aPFDLILVVfAP~ 677 (687)
.++|.++..+...
T Consensus 75 ~~~id~lI~~ag~~ 88 (270)
T PRK05650 75 WGGIDVIVNNAGVA 88 (270)
T ss_pred cCCCCEEEECCCCC
Confidence 3578776655443
No 321
>PRK12939 short chain dehydrogenase; Provisional
Probab=50.70 E-value=2e+02 Score=27.42 Aligned_cols=73 Identities=10% Similarity=-0.001 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.++++|=.|+ +|+++..+++.+. .+.+|++++.+++-++...+.++..+ .++.++.+|..+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG------GRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 4678998885 5777777776542 24589999999887776666665443 256777777542
Q ss_pred ----CCccEEEEEecC
Q psy14969 665 ----QDASRVNISVEP 676 (687)
Q Consensus 665 ----aPFDLILVVfAP 676 (687)
.+.|.++..+..
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 357877666544
No 322
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=50.69 E-value=1.5e+02 Score=28.83 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.| |+|.++..+++.+. .+.+|+.++.+++-++.+.+.+...+. ++.++.+|..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~------~~~~~~~Dl~ 71 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI------DALWIAADVA 71 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC------eEEEEEccCC
Confidence 568899999 56777777776642 245899999998877777666665442 5667777755
No 323
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=50.62 E-value=62 Score=33.80 Aligned_cols=46 Identities=26% Similarity=0.383 Sum_probs=33.5
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.++.-.+.|++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH
Confidence 577899999998763 555566666654 1269999999988877754
No 324
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=50.48 E-value=89 Score=31.69 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--------Cc
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ--------DA 667 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda--------PF 667 (687)
.|++||-.| |+|+++..+++.+ ..+.+|+++-.+..-.+.........+. ..++.++.+|..+. ..
T Consensus 4 ~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (322)
T PLN02986 4 GGKLVCVTG-ASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGA----KERLKLFKADLLEESSFEQAIEGC 78 (322)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCC----CCceEEEecCCCCcchHHHHHhCC
Confidence 467899888 6899998887654 2235788776655432222222211121 24678888876432 36
Q ss_pred cEEEEEecCC
Q psy14969 668 SRVNISVEPQ 677 (687)
Q Consensus 668 DLILVVfAP~ 677 (687)
|.|+-.+++.
T Consensus 79 d~vih~A~~~ 88 (322)
T PLN02986 79 DAVFHTASPV 88 (322)
T ss_pred CEEEEeCCCc
Confidence 8787777664
No 325
>PRK09291 short chain dehydrogenase; Provisional
Probab=50.45 E-value=1.4e+02 Score=28.74 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=43.7
Q ss_pred CCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---------CCc
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---------QDA 667 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---------aPF 667 (687)
+++||-.|++ |.++..+++.+ ..+.+|+++..++.-.+..+...+..+. ++.++.+|..+ ...
T Consensus 2 ~~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 2 SKTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL------ALRVEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------cceEEEeeCCCHHHHHHHhcCCC
Confidence 3578888864 55666665543 3346899999987765555544444432 45566666432 267
Q ss_pred cEEEEEecC
Q psy14969 668 SRVNISVEP 676 (687)
Q Consensus 668 DLILVVfAP 676 (687)
|.++..+..
T Consensus 75 d~vi~~ag~ 83 (257)
T PRK09291 75 DVLLNNAGI 83 (257)
T ss_pred CEEEECCCc
Confidence 877665543
No 326
>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat. Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.
Probab=50.05 E-value=8.6 Score=31.60 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=25.5
Q ss_pred HHHHHHHhccEEEEEeCCeeccccchhhh
Q psy14969 238 DLIEEMIKNQVFCIKLGDIVGCDFCGKQL 266 (687)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (687)
..++.|.....|+...||.|-|.+||..|
T Consensus 18 ~~~~~LA~~Gfyy~~~~d~v~C~~C~~~l 46 (71)
T smart00238 18 LTPEQLAEAGFYYTGVGDEVKCFFCGGEL 46 (71)
T ss_pred CCHHHHHHcCCeECCCCCEEEeCCCCCCc
Confidence 35788999999998889999999999875
No 327
>PRK07677 short chain dehydrogenase; Provisional
Probab=50.03 E-value=95 Score=30.13 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=37.8
Q ss_pred CCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 598 GDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
++++|-.|++.| ++..+++. ...+.+|+.++.++..++.+.+.++..+ .++.++..|..
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~ 60 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP------GQVLTVQMDVR 60 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCC
Confidence 457888887654 55555544 3334689999999877766666665433 35666766643
No 328
>PRK06139 short chain dehydrogenase; Provisional
Probab=49.70 E-value=1.4e+02 Score=31.44 Aligned_cols=72 Identities=18% Similarity=0.076 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.+++||-.|+++| ++..+++. ...+.+|+.++.+++.++...+.++..+. ++.++..|..+
T Consensus 6 ~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~------~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 6 HGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA------EVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------cEEEEEeeCCCHHHHHHHHHHH
Confidence 4678998887554 55555543 33356899999999988887777776553 45555555432
Q ss_pred ----CCccEEEEEec
Q psy14969 665 ----QDASRVNISVE 675 (687)
Q Consensus 665 ----aPFDLILVVfA 675 (687)
.++|.++-.+.
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 45787765544
No 329
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=48.66 E-value=41 Score=33.49 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=35.3
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK 643 (687)
+|+|+=||-|.++..|.++.- -.|.++|+++.+++.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc
Confidence 799999999999999887752 378999999999998888876
No 330
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=48.64 E-value=65 Score=33.30 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=33.5
Q ss_pred cCCCCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+++|++||-.|+| .|..++.+|+..+ ++|++++.+++-.+.|++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 57889999999975 3445556666654 579999999887766654
No 331
>PRK08251 short chain dehydrogenase; Provisional
Probab=48.52 E-value=2e+02 Score=27.68 Aligned_cols=61 Identities=10% Similarity=-0.085 Sum_probs=40.1
Q ss_pred CCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
++++|-.|+ +|.++..+++.+. ...+|+.++.++..++.....+..... ..++.++.+|..
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~ 63 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP----GIKVAVAALDVN 63 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEcCCC
Confidence 457888884 6777777766542 235899999998877766665554321 235677777754
No 332
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=47.78 E-value=12 Score=36.77 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=36.5
Q ss_pred eEEEEcCCccHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHHH---HcCC-----CccCCCcEEEEEcCCC-CCCccE
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPH-GKVYSLDHMEYLVNFSKENIR---KNHA-----HLLDEGVVNIMRTLPP-QQDASR 669 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~-GrVtGIDISpeAVE~ARKNLK---kaG~-----~VaSsgRI~LI~GDAe-daPFDL 669 (687)
+|--|| .||.+..+|..+... -+|+|+|++++.++...+-.. +-++ .....+++.+...... -...|.
T Consensus 2 ~I~ViG--lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 2 KIAVIG--LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred EEEEEC--CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence 455564 568877776654333 499999999998776543100 0000 0112456666532222 234677
Q ss_pred EEEEecCCC
Q psy14969 670 VNISVEPQK 678 (687)
Q Consensus 670 ILVVfAP~K 678 (687)
+++.+.++-
T Consensus 80 ~~I~VpTP~ 88 (185)
T PF03721_consen 80 VFICVPTPS 88 (185)
T ss_dssp EEE----EB
T ss_pred EEEecCCCc
Confidence 777765443
No 333
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=47.44 E-value=71 Score=33.18 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=32.0
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+.+|++||-+|+|. |.+++.+|+..+ ..+|++++.+++-.+.|++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH
Confidence 577899999998652 334445566654 2379999999887776643
No 334
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=46.87 E-value=47 Score=34.26 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeC---CHHHHHHHH
Q psy14969 595 LKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDH---MEYLVNFSK 639 (687)
Q Consensus 595 LkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDI---SpeAVE~AR 639 (687)
+.+|.+||-+|+|. |.+++.+|+..+ .+|++++. ++.-.+.|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHH
Confidence 45789999999875 677777888775 48999987 566655554
No 335
>PRK07890 short chain dehydrogenase; Provisional
Probab=46.80 E-value=1.4e+02 Score=28.87 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=39.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|. +|.++..+++. +..+.+|+.++.++.-.+.+.+.+...+. ++.++..|..
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~~ 64 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR------RALAVPTDIT 64 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC------ceEEEecCCC
Confidence 5678998886 45566666554 33456999999998877666666654432 4556666643
No 336
>PLN02650 dihydroflavonol-4-reductase
Probab=46.65 E-value=1.2e+02 Score=31.44 Aligned_cols=75 Identities=16% Similarity=0.051 Sum_probs=45.6
Q ss_pred CCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--------Ccc
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ--------DAS 668 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda--------PFD 668 (687)
.++||-.| |+|+++..+++.+- .+.+|++++.++.............+. ..++.++.+|..+. ..|
T Consensus 5 ~k~iLVTG-atGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~v~~Dl~d~~~~~~~~~~~d 79 (351)
T PLN02650 5 KETVCVTG-ASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGA----TTRLTLWKADLAVEGSFDDAIRGCT 79 (351)
T ss_pred CCEEEEeC-CcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCC----CCceEEEEecCCChhhHHHHHhCCC
Confidence 45788888 68999988887653 235899988876544332222111111 23577788775432 367
Q ss_pred EEEEEecCC
Q psy14969 669 RVNISVEPQ 677 (687)
Q Consensus 669 LILVVfAP~ 677 (687)
.|+-.+++.
T Consensus 80 ~ViH~A~~~ 88 (351)
T PLN02650 80 GVFHVATPM 88 (351)
T ss_pred EEEEeCCCC
Confidence 776666554
No 337
>PRK06223 malate dehydrogenase; Reviewed
Probab=46.58 E-value=60 Score=33.47 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=24.6
Q ss_pred CeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHH
Q psy14969 599 DTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVN 636 (687)
Q Consensus 599 ~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE 636 (687)
++|--||+|. |+..+......+ -+.|+.+|++++..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~-~~ev~L~D~~~~~~~ 40 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKE-LGDVVLFDIVEGVPQ 40 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEECCCchhH
Confidence 4788899976 655444433322 128999999988754
No 338
>PLN02827 Alcohol dehydrogenase-like
Probab=46.28 E-value=79 Score=33.51 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=31.5
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.+.+|++||-+|+|+ |.+++.+|+..+ ...|+++|.++.-.+.|+
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH
Confidence 577899999998753 444455566654 226889998887776664
No 339
>PRK06125 short chain dehydrogenase; Provisional
Probab=46.24 E-value=2.4e+02 Score=27.52 Aligned_cols=73 Identities=12% Similarity=0.012 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.++++|=.|++ |.++..+++.+ ..+.+|++++.+++.++.+...+.... ..++.++..|..+
T Consensus 6 ~~k~vlItG~~-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 6 AGKRVLITGAS-KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHh
Confidence 46789999965 44665555443 234699999999887776666665432 1245555555432
Q ss_pred CCccEEEEEec
Q psy14969 665 QDASRVNISVE 675 (687)
Q Consensus 665 aPFDLILVVfA 675 (687)
.+.|.++..+.
T Consensus 80 g~id~lv~~ag 90 (259)
T PRK06125 80 GDIDILVNNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 35776655543
No 340
>PRK09072 short chain dehydrogenase; Provisional
Probab=46.19 E-value=2.2e+02 Score=27.80 Aligned_cols=72 Identities=8% Similarity=-0.003 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
++.++|=.|++ |.++..+++.+ ..+.+|++++.+++.++...+.+ .. ..++.++..|..+
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~------~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY------PGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc------CCceEEEEccCCCHHHHHHHHHHH
Confidence 46788988865 55666655543 33569999999988776655554 22 2356666666443
Q ss_pred ---CCccEEEEEecC
Q psy14969 665 ---QDASRVNISVEP 676 (687)
Q Consensus 665 ---aPFDLILVVfAP 676 (687)
.+.|.++..+..
T Consensus 76 ~~~~~id~lv~~ag~ 90 (263)
T PRK09072 76 REMGGINVLINNAGV 90 (263)
T ss_pred HhcCCCCEEEECCCC
Confidence 246777665543
No 341
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=46.15 E-value=24 Score=30.49 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=33.1
Q ss_pred CCccHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC
Q psy14969 606 TGSGYTAACLGYMVRPHG-KVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ 664 (687)
Q Consensus 606 CGTGYLTAaLArLVGP~G-rVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed 664 (687)
||.|.++..+++.+...+ .|+.+|.+++.++.++.. + +.++.||+.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~--------~~~i~gd~~~ 51 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G--------VEVIYGDATD 51 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T--------SEEEES-TTS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c--------cccccccchh
Confidence 455678888887765556 899999999998776653 3 3577888764
No 342
>PRK07035 short chain dehydrogenase; Provisional
Probab=46.08 E-value=1.3e+02 Score=29.04 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
.+++||-.|+++| ++..+++. ...+.+|+.++.++..++...+.+...+. ++.++..|.
T Consensus 7 ~~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~ 66 (252)
T PRK07035 7 TGKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG------KAEALACHI 66 (252)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------eEEEEEcCC
Confidence 4578999997655 55555444 33345999999998877766666655432 344555553
No 343
>KOG2671|consensus
Probab=46.08 E-value=27 Score=39.20 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHH-------HHHHHHHcCCCccCC
Q psy14969 580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF-------SKENIRKNHAHLLDE 652 (687)
Q Consensus 580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~-------ARKNLKkaG~~VaSs 652 (687)
.+++--.+.... .+++|+.|+|==.|||.+....|+.. +-|+|-||+-.++.. -+.|+++.|. +.
T Consensus 193 DAeLSli~AN~A--mv~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~---~~ 264 (421)
T KOG2671|consen 193 DAELSLIMANQA--MVKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS---SS 264 (421)
T ss_pred chhHHHHHhhhh--ccCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCC---cc
Confidence 343433333333 57899999998888888877777665 489999999988873 3567788773 12
Q ss_pred CcEEEEEcCCC------CCCccEEE
Q psy14969 653 GVVNIMRTLPP------QQDASRVN 671 (687)
Q Consensus 653 gRI~LI~GDAe------daPFDLIL 671 (687)
.-+.++.+|-. .+-||.|+
T Consensus 265 ~fldvl~~D~sn~~~rsn~~fDaIv 289 (421)
T KOG2671|consen 265 QFLDVLTADFSNPPLRSNLKFDAIV 289 (421)
T ss_pred hhhheeeecccCcchhhcceeeEEE
Confidence 22444445533 34577653
No 344
>KOG2352|consensus
Probab=45.85 E-value=12 Score=42.77 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc----------CCCC
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT----------LPPQ 664 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G----------DAed 664 (687)
...+..+|-||-|+|.+...+-..+ |...+++|+++|.|++.|..++.-..-. ..++.+..| .+.+
T Consensus 293 ~~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~---r~~V~i~dGl~~~~~~~k~~~~~ 368 (482)
T KOG2352|consen 293 LDTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD---RNKVHIADGLDFLQRTAKSQQED 368 (482)
T ss_pred ccccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh---hhhhhHhhchHHHHHHhhccccc
Confidence 3456789999999999999887776 5779999999999999999876432210 112222222 2356
Q ss_pred CCccEEEEEecC
Q psy14969 665 QDASRVNISVEP 676 (687)
Q Consensus 665 aPFDLILVVfAP 676 (687)
..||++.+.+.-
T Consensus 369 ~~~dvl~~dvds 380 (482)
T KOG2352|consen 369 ICPDVLMVDVDS 380 (482)
T ss_pred cCCcEEEEECCC
Confidence 778988887653
No 345
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=45.80 E-value=71 Score=32.42 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=32.2
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGK-VYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~Gr-VtGIDISpeAVE~ARK 640 (687)
.+.+|.+||-+|+|. |.+++.+|+..+ ++ |++++.+++-.+.|++
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH
Confidence 567899999998752 445555666665 35 9999999887776643
No 346
>PRK07814 short chain dehydrogenase; Provisional
Probab=44.95 E-value=1.4e+02 Score=29.37 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=40.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|. +|.++..+++.+ ..+.+|++++.+++.++...+.++..+ .++.++..|..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~ 69 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG------RRAHVVAADLA 69 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCC
Confidence 5778999995 666777776643 345699999999877766666655433 25666666643
No 347
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=44.90 E-value=77 Score=33.05 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=32.7
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.+++|.+||-+|+|+ |..++.+|+..+ ..+|+++|.+++-.+.|+
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH
Confidence 577899999998752 445566677665 227999999888777664
No 348
>PRK05866 short chain dehydrogenase; Provisional
Probab=44.80 E-value=1.3e+02 Score=30.82 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+...+. ++.++.+|..
T Consensus 39 ~~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~------~~~~~~~Dl~ 99 (293)
T PRK05866 39 TGKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG------DAMAVPCDLS 99 (293)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------cEEEEEccCC
Confidence 35789999965 55666665543 3346999999998887776666655432 4566666654
No 349
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=44.56 E-value=92 Score=32.53 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=32.3
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.+++|++||-+|+|. |..++.+|+..+ ...|+++|.+++-.+.|+
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH
Confidence 577899999998752 445555666654 226999999988777664
No 350
>PRK08339 short chain dehydrogenase; Provisional
Probab=44.54 E-value=1.4e+02 Score=29.78 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|+++| ++..+++. +..+.+|+.++.+++-++.+.+.+.... ..++.++.+|..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~ 68 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLT 68 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCC
Confidence 4778999997665 44444444 3345699999999887777666665431 124566666644
No 351
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=44.52 E-value=1.3e+02 Score=29.46 Aligned_cols=74 Identities=11% Similarity=-0.029 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCccHHHHHHHH-hcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGY-MVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLAr-LVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.++++|-.|+++| ++..+++ ++..+.+|+.++.+++.++.+...++..+. ++.++..|..+
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI------EAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC------ceEEEEcCCCCHHHHHHHHHHH
Confidence 5678999997755 4444443 343356899999998888777777765442 56666666432
Q ss_pred ----CCccEEEEEecCC
Q psy14969 665 ----QDASRVNISVEPQ 677 (687)
Q Consensus 665 ----aPFDLILVVfAP~ 677 (687)
.++|.++..++..
T Consensus 82 ~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 82 EKEVGVIDILVNNAGII 98 (265)
T ss_pred HHhCCCCCEEEECCCCC
Confidence 3478776665543
No 352
>PRK08703 short chain dehydrogenase; Provisional
Probab=44.36 E-value=1.8e+02 Score=27.88 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKN 645 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKka 645 (687)
.+++||-.|++ |.++..+++.+ ..+.+|++++.+++..+.....+...
T Consensus 5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~ 53 (239)
T PRK08703 5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA 53 (239)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc
Confidence 46789999964 55665555543 33568999999998777666666543
No 353
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=44.22 E-value=58 Score=33.76 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=33.8
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+++|++||-+|+|. |.+++.+|+..+ ..+|+++|.++.-.+.|++
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH
Confidence 567899999998753 555666677664 2259999999888777753
No 354
>KOG2782|consensus
Probab=44.04 E-value=19 Score=38.33 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14969 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643 (687)
Q Consensus 581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK 643 (687)
|-|..-+++.+ .+.+|...+|.--|.|.-|..+.+.. +..+++++|.+|.+.+.|.....
T Consensus 29 PVm~devl~~l--spv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 29 PVMLDEVLDIL--SPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred ceehhhHHHHc--CCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH
Confidence 44677778877 68899999999999999998888886 57899999999999998887653
No 355
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=44.00 E-value=2.7e+02 Score=27.01 Aligned_cols=61 Identities=13% Similarity=0.012 Sum_probs=37.4
Q ss_pred CCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
+++||-.|. +|.++..+++.+ ..+.+|+.+|.++...+.....+....- ..++.++..|..
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~ 63 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYG----EGMAYGFGADAT 63 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC----CceeEEEEccCC
Confidence 457888895 566776666554 2346899999988766555444443210 124566666644
No 356
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=43.90 E-value=1.4e+02 Score=29.00 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=39.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-+|++ |.++..+++. ...+.+|+.++.+...++.+...++..+. ++.++..|..
T Consensus 10 ~~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~------~~~~~~~D~~ 70 (255)
T PRK06113 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG------QAFACRCDIT 70 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC------cEEEEEccCC
Confidence 47899999965 5555555544 33346899999988887776666655432 4555555543
No 357
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=43.49 E-value=61 Score=35.89 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=31.7
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.++|-=|| .||.+..+|..+...-.|+++|+++..++..+
T Consensus 6 ~mkI~vIG--lGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 6 EVKIAIIG--LGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCeEEEEC--cCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 35676675 57999999887765568999999999988765
No 358
>PRK09242 tropinone reductase; Provisional
Probab=43.22 E-value=1.6e+02 Score=28.67 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=40.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-+|+++ .++..+++. ...+.+|+.++.+++.++...+.+..... ..++.++..|..
T Consensus 8 ~~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~ 70 (257)
T PRK09242 8 DGQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP----EREVHGLAADVS 70 (257)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CCeEEEEECCCC
Confidence 477899999754 455555544 33356899999998877766666655411 235666666653
No 359
>PRK05876 short chain dehydrogenase; Provisional
Probab=43.10 E-value=1.4e+02 Score=30.10 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=39.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|.+ |.++..+++.+ ..+.+|+.++.+++.++.+.+.+...+. ++.++..|..
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~------~~~~~~~Dv~ 65 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF------DVHGVMCDVR 65 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------eEEEEeCCCC
Confidence 46789988875 45566655543 3346899999998877766666655443 5666666653
No 360
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=43.04 E-value=28 Score=36.59 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCCccHHHHHH-HHhcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969 595 LKPGDTVLDVGTGSGYTAACL-GYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaL-ArLVGP~GrVtGIDISpeAVE~ARKNLKka 645 (687)
-..|.++||||||+-.+-+.- +..+. .++..|..+.-.+..++=+++.
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~el~kWl~~~ 102 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREELEKWLRKE 102 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHHHHHHHTT-
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHHHHHHHCCC
Confidence 346779999999976554333 33443 7999999998887766655543
No 361
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=43.00 E-value=1.9e+02 Score=27.61 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=38.9
Q ss_pred CeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 599 DTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
++||=.| |+|+++..+++.+ ..+.+|++++.++.-.+.....+...+ .++.++.+|..
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~ 60 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG------GSVIYLVADVT 60 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEECCCC
Confidence 4678788 5678887777654 334589999999877666665555433 25666666644
No 362
>PLN02427 UDP-apiose/xylose synthase
Probab=43.00 E-value=76 Score=33.33 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--------C
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPH--GKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ--------D 666 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~--GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda--------P 666 (687)
..++||-.| |+|+++..+++.+-.. .+|+++|.+...+. .+...+. .....+++++.+|..+. .
T Consensus 13 ~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~----~l~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~~ 86 (386)
T PLN02427 13 KPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIK----HLLEPDT-VPWSGRIQFHRINIKHDSRLEGLIKM 86 (386)
T ss_pred cCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhh----hhhcccc-ccCCCCeEEEEcCCCChHHHHHHhhc
Confidence 456899888 7899999888765332 48999998754322 1111110 00124688888886531 3
Q ss_pred ccEEEEEecC
Q psy14969 667 ASRVNISVEP 676 (687)
Q Consensus 667 FDLILVVfAP 676 (687)
+|.|+-.++.
T Consensus 87 ~d~ViHlAa~ 96 (386)
T PLN02427 87 ADLTINLAAI 96 (386)
T ss_pred CCEEEEcccc
Confidence 6877666653
No 363
>PRK08643 acetoin reductase; Validated
Probab=42.91 E-value=1.5e+02 Score=28.69 Aligned_cols=59 Identities=12% Similarity=0.034 Sum_probs=38.6
Q ss_pred CCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
++++|-+|. +|.++..+++.+ ..+.+|+.++.+++..+.....+...+. ++.++..|..
T Consensus 2 ~k~~lItGa-s~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dl~ 61 (256)
T PRK08643 2 SKVALVTGA-GQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG------KAIAVKADVS 61 (256)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------eEEEEECCCC
Confidence 457888885 555666666554 3345899999998877776666655432 4556666644
No 364
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=42.80 E-value=1.6e+02 Score=28.08 Aligned_cols=60 Identities=15% Similarity=0.065 Sum_probs=40.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
+++++|-.|+ +|.++..+++.+ ..+.+|+.++.+.+....+...+...+ .++.++.+|..
T Consensus 2 ~~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~d~~ 62 (250)
T TIGR03206 2 KDKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG------GNAQAFACDIT 62 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC------CcEEEEEcCCC
Confidence 4678898885 566666666553 223589999999887776666665543 35677777754
No 365
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=42.13 E-value=1.8e+02 Score=31.38 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCC-------------------HHHHHHHHHHHHHcCC
Q psy14969 597 PGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHM-------------------EYLVNFSKENIRKNHA 647 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDIS-------------------peAVE~ARKNLKkaG~ 647 (687)
...+||=||||. |...+......| -++++-+|.+ ..-++.+++++.+.+-
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np 203 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP 203 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence 467899999983 443333332333 3689999988 4456777777776643
No 366
>PRK07774 short chain dehydrogenase; Provisional
Probab=41.75 E-value=2.4e+02 Score=27.11 Aligned_cols=72 Identities=10% Similarity=0.023 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ---------- 665 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda---------- 665 (687)
.++++|=.| |+|+++..+++.+ ..+.+|+.++.++...+...+.+...+ .++.++..|..+.
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG------GTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHH
Confidence 467899888 5678888887654 234699999999876665555554432 2445556664422
Q ss_pred -----CccEEEEEec
Q psy14969 666 -----DASRVNISVE 675 (687)
Q Consensus 666 -----PFDLILVVfA 675 (687)
+.|.++..+.
T Consensus 78 ~~~~~~id~vi~~ag 92 (250)
T PRK07774 78 VSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHhCCCCEEEECCC
Confidence 4687766554
No 367
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=41.71 E-value=69 Score=35.78 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=36.9
Q ss_pred cCCCCCeEEEEcCCccHHHHHH-HHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACL-GYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaL-ArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
++++|.+|.-+|||.=.+++.+ |++++ .+++++||++++-+++|++
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKK 228 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh
Confidence 6889999999999964444444 55554 6799999999999999886
No 368
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.62 E-value=49 Score=33.65 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=27.5
Q ss_pred eEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHH
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKENIR 643 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARKNLK 643 (687)
+|-=||+| +++..+|..+.. +..|+.+|++++.++.+++++.
T Consensus 5 kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~ 47 (282)
T PRK05808 5 KIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATIT 47 (282)
T ss_pred EEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHH
Confidence 56677775 555544443311 2389999999999987775443
No 369
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.54 E-value=1e+02 Score=33.62 Aligned_cols=67 Identities=19% Similarity=0.096 Sum_probs=37.9
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHH-HHHHHHHHHHHcCCCccCCCcEEEEEcCC--CCCCccEEEE
Q psy14969 597 PGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEY-LVNFSKENIRKNHAHLLDEGVVNIMRTLP--PQQDASRVNI 672 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpe-AVE~ARKNLKkaG~~VaSsgRI~LI~GDA--edaPFDLILV 672 (687)
.+.+|+-||.|. |..++.++... +.+|+++|..+. ......+.+++.|+ .+..+.. ....+|+|++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~~l~~~gv--------~~~~~~~~~~~~~~D~Vv~ 84 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLEL--GARVTVVDDGDDERHRALAAILEALGA--------TVRLGPGPTLPEDTDLVVT 84 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhhHHHHHHHHHcCC--------EEEECCCccccCCCCEEEE
Confidence 467899999883 43333333222 358999996643 33344455666665 2333322 1245787766
Q ss_pred E
Q psy14969 673 S 673 (687)
Q Consensus 673 V 673 (687)
.
T Consensus 85 s 85 (480)
T PRK01438 85 S 85 (480)
T ss_pred C
Confidence 5
No 370
>PRK07062 short chain dehydrogenase; Provisional
Probab=41.33 E-value=1.6e+02 Score=28.72 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
.++.+|-.|+++ .++..+++.+ ..+.+|+.++.+++-++.+.+.+..... ..++.++..|.
T Consensus 7 ~~k~~lItGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~ 68 (265)
T PRK07062 7 EGRVAVVTGGSS-GIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP----GARLLAARCDV 68 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEecC
Confidence 477899999654 4555565543 3356899999998877776666654321 12455555554
No 371
>KOG2078|consensus
Probab=41.22 E-value=18 Score=41.31 Aligned_cols=50 Identities=32% Similarity=0.347 Sum_probs=45.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
.++|..|.|+-||-|-.++.+++.. .+|++-|.+++++++-+.+++.+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhcccccc
Confidence 5789999999999999999988764 5999999999999999999988776
No 372
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=41.08 E-value=1.1e+02 Score=30.99 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=35.1
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+.++.+||-.|+|. |+.++.+|+..+ .+|+++..+++..+.+++
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARE 201 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHH
Confidence 677899999998874 777777888765 689999888887776643
No 373
>KOG0022|consensus
Probab=40.80 E-value=61 Score=36.13 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=37.6
Q ss_pred cCCCCCeEEEEcCCccHHHHHH-HHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACL-GYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaL-ArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+++|..|.-.|.|.=.++..+ |++.+ .++++|||++++-.+.|++
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHh
Confidence 6889999999999975555554 56655 6799999999999988876
No 374
>PRK07454 short chain dehydrogenase; Provisional
Probab=40.64 E-value=2e+02 Score=27.55 Aligned_cols=60 Identities=7% Similarity=-0.086 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
..+++|-.|+ +|.++..+++.+. .+.+|+.++.++.-.+...+.++..+ .++.++.+|..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~ 65 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG------VKAAAYSIDLS 65 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC------CcEEEEEccCC
Confidence 4567888884 6777777766542 34589999999876665555554433 35667777754
No 375
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=40.61 E-value=84 Score=32.68 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHH-HcCCCccCCCcEEEEEcCCCC--------CC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKENIR-KNHAHLLDEGVVNIMRTLPPQ--------QD 666 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARKNLK-kaG~~VaSsgRI~LI~GDAed--------aP 666 (687)
.+++||-.| |+|+++..|++.+-. +.+|+++|............+. ..+. ....++.++.+|..+ ..
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSE--EQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhcccc--ccCCceEEEEccCCCHHHHHHHhhC
Confidence 457899999 789999988876532 3489999975432211111111 1110 012467888888653 23
Q ss_pred ccEEEEEecC
Q psy14969 667 ASRVNISVEP 676 (687)
Q Consensus 667 FDLILVVfAP 676 (687)
.|.|+-.++.
T Consensus 91 ~d~ViHlAa~ 100 (348)
T PRK15181 91 VDYVLHQAAL 100 (348)
T ss_pred CCEEEECccc
Confidence 6777666654
No 376
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=40.58 E-value=1.7e+02 Score=26.40 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHHHHH
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMVRP--HGKVYSLDHMEYLVNFSKENIR 643 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLVGP--~GrVtGIDISpeAVE~ARKNLK 643 (687)
..+.+|+-+|+| .++..+++.+.. ...|+.+|.+++..+...+.+.
T Consensus 17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~ 64 (155)
T cd01065 17 LKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG 64 (155)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 346899999985 455555544322 2479999999887666555444
No 377
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=40.36 E-value=59 Score=36.35 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 595 LKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 595 LkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
..+|++|+-+|+|. |...+.+++..+ ++|+.+|+++.-.+.|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh
Confidence 35799999999996 555566666655 589999999887766654
No 378
>KOG3178|consensus
Probab=40.25 E-value=33 Score=37.86 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=38.3
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLK 643 (687)
-...+|+|.|.|..+..+....+ .|-+++.+...+..++..+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~ 220 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA 220 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc
Confidence 37899999999999999988664 69999999999999999885
No 379
>PRK06197 short chain dehydrogenase; Provisional
Probab=40.13 E-value=1.9e+02 Score=29.27 Aligned_cols=62 Identities=8% Similarity=-0.100 Sum_probs=39.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|+ +|.++..+++.+ ..+.+|+.+..+++..+.+.+.+..... ..++.++..|..
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~ 77 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATP----GADVTLQELDLT 77 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEECCCC
Confidence 5678998885 455666666543 2345899999998877766666554211 235666777654
No 380
>PRK07478 short chain dehydrogenase; Provisional
Probab=40.11 E-value=1.8e+02 Score=28.14 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|++ |.++..+++.+ ..+.+|+.++.++.-++.+.+.++..+. ++.++..|..
T Consensus 5 ~~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~~ 65 (254)
T PRK07478 5 NGKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG------EAVALAGDVR 65 (254)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------cEEEEEcCCC
Confidence 46788988865 44555555443 2346899999998877777766665442 4556666643
No 381
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=40.03 E-value=66 Score=31.41 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=34.7
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGK-VYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~Gr-VtGIDISpeAVE~ARK 640 (687)
.+.++.+||-.|+|. |..+..+|+..+ .+ |++++.+++-.+.|++
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHH
Confidence 577899999998875 666677777765 35 9999999888776654
No 382
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=39.75 E-value=1.4e+02 Score=30.35 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=33.9
Q ss_pred cCCCCCeEEEEcC--CccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGT--GSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGC--GTGYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.+++|++||=.|. |.|..++.+|+..+ .+|++++.+++-.+.++
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 6788999999984 46677777777765 58999999888766664
No 383
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=39.50 E-value=34 Score=38.02 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=17.0
Q ss_pred CCeEEEEcCCccHHHHHHHHh
Q psy14969 598 GDTVLDVGTGSGYTAACLGYM 618 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArL 618 (687)
..+|+|+|||+|.+|..+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~ 84 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDV 84 (386)
T ss_pred ceeEEEecCCCCccHHHHHHH
Confidence 568999999999998766433
No 384
>PRK09186 flagellin modification protein A; Provisional
Probab=39.06 E-value=1.8e+02 Score=27.94 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=39.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|.+ |.++..+++.+ ..+.+|++++.+++.++.+.+.+..... ...+.++.+|..
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~ 65 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK----SKKLSLVELDIT 65 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC----CCceeEEEecCC
Confidence 46789999964 55666666554 3346899999998877766666643211 224555566643
No 385
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=38.95 E-value=1.3e+02 Score=31.51 Aligned_cols=44 Identities=20% Similarity=0.137 Sum_probs=34.6
Q ss_pred cCCCCCeEEEEcC--CccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGT--GSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGC--GTGYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.+++|++||-.|+ |.|..++.+|+..+ .+|++++.+++-.+.++
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH
Confidence 5788999999997 36777777888765 57999999887766655
No 386
>KOG2793|consensus
Probab=38.83 E-value=47 Score=35.05 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=25.5
Q ss_pred CCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHH
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYL 634 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeA 634 (687)
..+||++|+|+|..++.+|...+ +.|+--|.-..+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~ 121 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVV 121 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhH
Confidence 55799999999988888887654 466666654433
No 387
>PRK08226 short chain dehydrogenase; Provisional
Probab=38.77 E-value=2.8e+02 Score=26.96 Aligned_cols=73 Identities=10% Similarity=0.001 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.++++|-.|+ +|.++..+++.+ ..+.+|+.++.++...+.+. .+...+ .++.++.+|..+
T Consensus 5 ~~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~-~~~~~~------~~~~~~~~Dl~~~~~v~~~~~~~ 76 (263)
T PRK08226 5 TGKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEKLAD-ELCGRG------HRCTAVVADVRDPASVAAAIKRA 76 (263)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHH-HHHHhC------CceEEEECCCCCHHHHHHHHHHH
Confidence 4678998886 466666666543 33568999999876544333 333322 245566666542
Q ss_pred ----CCccEEEEEecCC
Q psy14969 665 ----QDASRVNISVEPQ 677 (687)
Q Consensus 665 ----aPFDLILVVfAP~ 677 (687)
.+.|.++..+...
T Consensus 77 ~~~~~~id~vi~~ag~~ 93 (263)
T PRK08226 77 KEKEGRIDILVNNAGVC 93 (263)
T ss_pred HHHcCCCCEEEECCCcC
Confidence 2567776665543
No 388
>PRK05599 hypothetical protein; Provisional
Probab=38.70 E-value=1.6e+02 Score=28.86 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=31.8
Q ss_pred eEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG 646 (687)
.||-.|+++| ++..+|+.+....+|+.++.+++-++.+.+.++..+
T Consensus 2 ~vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~ 47 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG 47 (246)
T ss_pred eEEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence 5777887655 555555544456788888988887777777666544
No 389
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=38.34 E-value=2.9e+02 Score=27.00 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=36.2
Q ss_pred CeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 599 DTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
++||-.|.+.| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+ ++.++..|.
T Consensus 1 m~vlItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~Dv 57 (259)
T PRK08340 1 MNVLVTASSRG-IGFNVARELLKKGARVVISSRNEENLEKALKELKEYG-------EVYAVKADL 57 (259)
T ss_pred CeEEEEcCCcH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEcCC
Confidence 36888896644 555555543 335689999999888777766665432 344555554
No 390
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=38.00 E-value=2e+02 Score=28.46 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=38.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|.++ .++..+++.+ ..+.+|+.++.+++..+...+.+...+ .++.++..|..
T Consensus 9 ~~k~vlVtGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~ 69 (278)
T PRK08277 9 KGKVAVITGGGG-VLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG------GEALAVKADVL 69 (278)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCC
Confidence 467889888654 4555555443 334689999999877766666665443 25566666643
No 391
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.83 E-value=2.1e+02 Score=27.21 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=37.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|++ |.++..+++.+ ..+.+|++++.+++..+...+.+... +++.++.+|..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dl~ 63 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-------GNIHYVVGDVS 63 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEECCCC
Confidence 46789999975 55666666554 33568999999987666554444332 24555666543
No 392
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=37.82 E-value=60 Score=33.17 Aligned_cols=44 Identities=16% Similarity=-0.065 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 596 KPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 596 kpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.++++||-+|+|. |.+++.+|+..+ ...|+++|.+++.++.|..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATG 187 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhh
Confidence 3577899999764 667777787765 2247788998887766654
No 393
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=37.46 E-value=2e+02 Score=30.79 Aligned_cols=71 Identities=14% Similarity=0.032 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE
Q psy14969 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR 659 (687)
Q Consensus 581 P~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~ 659 (687)
+.....+...+.......++|+=+|+ |.++..+++.+.. +..|+.+|.+++.++.+++.. ..+.++.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i~ 281 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVLH 281 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEEE
Confidence 44444444444222234578998887 5777777766532 458999999999887766542 1245566
Q ss_pred cCCC
Q psy14969 660 TLPP 663 (687)
Q Consensus 660 GDAe 663 (687)
||+.
T Consensus 282 gd~~ 285 (453)
T PRK09496 282 GDGT 285 (453)
T ss_pred CCCC
Confidence 7754
No 394
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.44 E-value=2.9e+02 Score=26.16 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=48.9
Q ss_pred CCeEEEEcCCccHHHHHHHHhc-CCCcEEEEE-eCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMV-RPHGKVYSL-DHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLV-GP~GrVtGI-DISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
++++|=+| |+|.++..+++.+ ..+.+|+.+ +.+++..+.....+...+ .++.++.+|..+
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 77 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG------GDAIAVKADVSSEEDVENLVEQI 77 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHHH
Confidence 46788888 4677887777653 234588888 998877766666655533 357777777542
Q ss_pred ----CCccEEEEEecCC
Q psy14969 665 ----QDASRVNISVEPQ 677 (687)
Q Consensus 665 ----aPFDLILVVfAP~ 677 (687)
.++|.++....+.
T Consensus 78 ~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 78 VEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHhCCCCEEEECCCcC
Confidence 1678887766554
No 395
>PRK07576 short chain dehydrogenase; Provisional
Probab=37.40 E-value=2.1e+02 Score=28.39 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
++.++|-.|. +|.++..+++.+ ..+.+|+.++.+++-++...+.+...+. ++.++..|..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dv~ 68 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP------EGLGVSADVR 68 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC------ceEEEECCCC
Confidence 5778999985 566776666543 2345899999998877666555554432 4455555543
No 396
>PRK08862 short chain dehydrogenase; Provisional
Probab=36.97 E-value=1.8e+02 Score=28.62 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG 646 (687)
.++++|-.|++.|.-.+...++...+.+|+.++.+++.++.+.+.+...+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~ 53 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT 53 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence 46789999988876444443444445789999999988887777776654
No 397
>KOG2912|consensus
Probab=36.40 E-value=33 Score=38.26 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=41.8
Q ss_pred EEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEc
Q psy14969 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRT 660 (687)
Q Consensus 601 VLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~G 660 (687)
-+|||+|.-.+=.++..... +....+.|++..-+..|..++.+++. ...+.+++-
T Consensus 106 GiDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~l----ss~ikvV~~ 160 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNL----SSLIKVVKV 160 (419)
T ss_pred eeeccCchhhhHHhhhchhc-cceeeeeeccccccchhhcccccccc----ccceeeEEe
Confidence 57999987766555543332 46889999999999999999999998 455555554
No 398
>PRK12829 short chain dehydrogenase; Provisional
Probab=36.24 E-value=3.9e+02 Score=25.81 Aligned_cols=73 Identities=11% Similarity=-0.018 Sum_probs=45.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----------
Q psy14969 596 KPGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---------- 664 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---------- 664 (687)
.+++++|-+|++ |.++..+++.+ ..+.+|++++.++...+...+..... ++.++.+|..+
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA--------KVTATVADVADPAQVERVFDT 79 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC--------ceEEEEccCCCHHHHHHHHHH
Confidence 367899999964 66777666553 33468999999887665443333211 34555555432
Q ss_pred -----CCccEEEEEecCC
Q psy14969 665 -----QDASRVNISVEPQ 677 (687)
Q Consensus 665 -----aPFDLILVVfAP~ 677 (687)
.++|.++..+...
T Consensus 80 ~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 80 AVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 3678877666554
No 399
>PRK07109 short chain dehydrogenase; Provisional
Probab=36.12 E-value=2e+02 Score=30.19 Aligned_cols=60 Identities=15% Similarity=0.000 Sum_probs=40.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.++..+. ++.++.+|..
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~------~~~~v~~Dv~ 67 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG------EALAVVADVA 67 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC------cEEEEEecCC
Confidence 46788988965 55665555543 3346899999999888777777766543 5666666643
No 400
>PRK07831 short chain dehydrogenase; Provisional
Probab=36.09 E-value=4.3e+02 Score=25.88 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCCeEEEEcC-CccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGT-GSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRK-NHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGC-GTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKk-aG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|. |+|. +..+++. +..+.+|+.+|.++.-++.+.+.++. .+ ..++.++.+|..
T Consensus 16 ~~k~vlItG~sg~gI-G~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~ 79 (262)
T PRK07831 16 AGKVVLVTAAAGTGI-GSATARRALEEGARVVISDIHERRLGETADELAAELG-----LGRVEAVVCDVT 79 (262)
T ss_pred CCCEEEEECCCcccH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC-----CceEEEEEccCC
Confidence 5678999985 3443 3333333 32345899999998877777666655 22 135666666654
No 401
>PRK08267 short chain dehydrogenase; Provisional
Probab=36.06 E-value=3e+02 Score=26.85 Aligned_cols=71 Identities=7% Similarity=-0.076 Sum_probs=43.0
Q ss_pred CeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-------------
Q psy14969 599 DTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ------------- 664 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed------------- 664 (687)
+++|-+|+ +|.++..+++. +..+.+|+.++.+++.++.....+. + .++.++.+|..+
T Consensus 2 k~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~------~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 2 KSIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A------GNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred cEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C------CceEEEEecCCCHHHHHHHHHHHHH
Confidence 36888885 46666666654 3334689999999887666544433 1 245566665432
Q ss_pred ---CCccEEEEEecCCC
Q psy14969 665 ---QDASRVNISVEPQK 678 (687)
Q Consensus 665 ---aPFDLILVVfAP~K 678 (687)
.++|.++..+....
T Consensus 73 ~~~~~id~vi~~ag~~~ 89 (260)
T PRK08267 73 ATGGRLDVLFNNAGILR 89 (260)
T ss_pred HcCCCCCEEEECCCCCC
Confidence 35677766554433
No 402
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.01 E-value=2.1e+02 Score=27.24 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||=+|+ +|+++..+++.+ ..+.+|++++.++.-.+.....+.. + .++.++.+|..
T Consensus 4 ~~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~------~~~~~~~~D~~ 63 (251)
T PRK07231 4 EGKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G------GRAIAVAADVS 63 (251)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C------CeEEEEECCCC
Confidence 4568898885 466766666553 2345899999998776665555443 2 24666666644
No 403
>PRK07904 short chain dehydrogenase; Provisional
Probab=35.93 E-value=1.9e+02 Score=28.63 Aligned_cols=62 Identities=10% Similarity=0.033 Sum_probs=39.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhc-CC-CcEEEEEeCCHHH-HHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMV-RP-HGKVYSLDHMEYL-VNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLV-GP-~GrVtGIDISpeA-VE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
...+++||-.|++ |.++..+++.+ .. ..+|+.++.+++. ++.+.+.++..+. .++.++..|.
T Consensus 5 ~~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-----~~v~~~~~D~ 69 (253)
T PRK07904 5 VGNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-----SSVEVIDFDA 69 (253)
T ss_pred cCCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-----CceEEEEecC
Confidence 4567899999975 55666666553 32 2589999988764 5655555655431 2456666654
No 404
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=35.46 E-value=1.7e+02 Score=29.16 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=33.6
Q ss_pred cCCCCCeEEEEcC--CccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGT--GSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGC--GTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+.+|.+||=.|. |.|..++.+|+..+ .+|++++.+++-.+.+++
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 5778999999884 45666666777765 589999988877666544
No 405
>PRK05855 short chain dehydrogenase; Validated
Probab=35.35 E-value=2.4e+02 Score=30.48 Aligned_cols=60 Identities=22% Similarity=0.138 Sum_probs=40.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+.++|-+|. +|.++..+++.+ ..+.+|+.++.++..++.+.+.++..+. ++.++..|..
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~Dv~ 374 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA------VAHAYRVDVS 374 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------eEEEEEcCCC
Confidence 3568888886 555666665544 3346899999998877777666665543 5666666654
No 406
>PRK07102 short chain dehydrogenase; Provisional
Probab=35.32 E-value=2.3e+02 Score=27.32 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=38.4
Q ss_pred CeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 599 DTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
++||-.|+ +|.++..+++.+ ..+.+|++++.+++-.+...+.+...+ ..++.++.+|..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~ 61 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDIL 61 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCC
Confidence 46888884 566777666654 234589999999877665555544332 246777777654
No 407
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=35.00 E-value=1e+02 Score=33.30 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCC
Q psy14969 579 NSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHM 631 (687)
Q Consensus 579 SaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDIS 631 (687)
.++.+.++++.+. .+.+|.+||-+=.-.|.+++++++.++..|.|+.+=..
T Consensus 185 lR~d~la~il~~a--NV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~~~~ 235 (299)
T PF04189_consen 185 LRFDTLAQILSLA--NVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITLHHG 235 (299)
T ss_pred cCHHHHHHHHHhc--CCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEEeeC
Confidence 4667888988877 89999999988766799999999888767777766433
No 408
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=34.89 E-value=94 Score=34.63 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=37.1
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHc
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKka 645 (687)
.+..|.+|.-||+|.-.+.+.|++. | ++|..||+++.-+..-+-++...
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHHH
Confidence 3567899999999954466666654 3 49999999999888776666554
No 409
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.80 E-value=3.7e+02 Score=27.59 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCC-HHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHM-EYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDIS-peAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---------- 664 (687)
.++++|-.|++.| ++..+++. +..+.+|+.+|.. ...++.+.+.+...+ .++.++.+|..+
T Consensus 11 ~~k~~lVTGas~g-IG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g------~~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 11 SGKVAVVTGAAAG-LGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG------AKAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC------CeEEEEeCCCCCHHHHHHHHHH
Confidence 5678998897755 45555443 3334688888874 334444445555433 356666666543
Q ss_pred ----CCccEEEEEecCC
Q psy14969 665 ----QDASRVNISVEPQ 677 (687)
Q Consensus 665 ----aPFDLILVVfAP~ 677 (687)
.+.|.++..+...
T Consensus 84 ~~~~g~iD~li~nAG~~ 100 (306)
T PRK07792 84 AVGLGGLDIVVNNAGIT 100 (306)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 3567766554433
No 410
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=34.69 E-value=57 Score=28.44 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=27.3
Q ss_pred CccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 607 GSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 607 GTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
|.|..++.+|+..+ ++|+++|.++.-.+.+++
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh
Confidence 46889999999987 799999999998877765
No 411
>PRK07791 short chain dehydrogenase; Provisional
Probab=34.67 E-value=3.5e+02 Score=27.40 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCccHHHHHHHH-hcCCCcEEEEEeCCH---------HHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGY-MVRPHGKVYSLDHME---------YLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLAr-LVGP~GrVtGIDISp---------eAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
.++++|-.|+++| ++..+++ ++..+.+|+.++.+. +.++.+.+.++..+. ++.++..|.
T Consensus 5 ~~k~~lITGas~G-IG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~Dv 73 (286)
T PRK07791 5 DGRVVIVTGAGGG-IGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG------EAVANGDDI 73 (286)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC------ceEEEeCCC
Confidence 5788999997766 4444444 333346888888764 445555555554332 444555554
No 412
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=34.55 E-value=2.3e+02 Score=28.13 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCC-------------------HHHHHHHHHHHHHcCC
Q psy14969 597 PGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHM-------------------EYLVNFSKENIRKNHA 647 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDIS-------------------peAVE~ARKNLKkaG~ 647 (687)
...+||=||||. |...+....+.+ -++++.+|.+ ..-++.+++++.+.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS 89 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC
Confidence 467899999983 333332222333 3589999987 3445666777776543
No 413
>PRK08589 short chain dehydrogenase; Validated
Probab=34.53 E-value=2.1e+02 Score=28.43 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHh-cCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYM-VRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArL-VGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
.++++|-.|++.| ++..+++. +..+.+|+.++.+ +.++...+.++..+ .++.++..|.
T Consensus 5 ~~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~------~~~~~~~~Dl 63 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG------GKAKAYHVDI 63 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC------CeEEEEEeec
Confidence 4678998997654 55555543 3345699999999 44444444554433 2455555554
No 414
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=34.52 E-value=2.4e+02 Score=27.41 Aligned_cols=73 Identities=8% Similarity=-0.015 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.++++|-.|.+ |.++..+++.+ ..+.+|+.++.++..++.....++..+. ++.++..|..+
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~------~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI------KAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC------eEEEEecCCCCHHHHHHHHHHH
Confidence 46789999955 55665555543 3346999999998777766666655432 44555555432
Q ss_pred ----CCccEEEEEecC
Q psy14969 665 ----QDASRVNISVEP 676 (687)
Q Consensus 665 ----aPFDLILVVfAP 676 (687)
.++|.++..+..
T Consensus 81 ~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 81 EKDIGPIDVLINNAGI 96 (254)
T ss_pred HHhcCCCCEEEECCCc
Confidence 347877665543
No 415
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=34.39 E-value=1.2e+02 Score=32.31 Aligned_cols=43 Identities=19% Similarity=0.076 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI 642 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNL 642 (687)
...+||-=|||.|.++.-+|.+.- .|.|.|.|--|+-...--+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHH
Confidence 356999999999999999998854 8999999999986555433
No 416
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=34.15 E-value=3.5e+02 Score=24.26 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=48.4
Q ss_pred eEEEEcCCccHHHHHHHHhcCC--CcEEEEEeCC--HHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRP--HGKVYSLDHM--EYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP--~GrVtGIDIS--peAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.||=+|+++| ++..+++.+.. ...|+.+..+ .+.++.....++..+. ++.++..|..+
T Consensus 2 ~~lItGa~~g-iG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~------~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 2 TVLITGASSG-IGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGA------KITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTS------EEEEEESETTSHHHHHHHHHHH
T ss_pred EEEEECCCCH-HHHHHHHHHHhcCceEEEEeeeccccccccccccccccccc------cccccccccccccccccccccc
Confidence 5788887655 55555554322 2478888888 5666666666665543 78888877543
Q ss_pred ----CCccEEEEEecCCCcCc
Q psy14969 665 ----QDASRVNISVEPQKSGE 681 (687)
Q Consensus 665 ----aPFDLILVVfAP~K~gE 681 (687)
.++|.++..+.....+.
T Consensus 75 ~~~~~~ld~li~~ag~~~~~~ 95 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIFSDGS 95 (167)
T ss_dssp HHHHSSESEEEEECSCTTSBS
T ss_pred ccccccccccccccccccccc
Confidence 57888877766555443
No 417
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=34.00 E-value=45 Score=36.50 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=28.1
Q ss_pred EEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 601 VLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
|--| |.||.+..+|..+..+-.|+++|++++.++..++
T Consensus 3 I~VI--GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 3 ITIS--GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEE--CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 4444 5668887777665434579999999999988776
No 418
>PTZ00357 methyltransferase; Provisional
Probab=33.97 E-value=1.5e+02 Score=36.37 Aligned_cols=66 Identities=8% Similarity=0.012 Sum_probs=45.0
Q ss_pred eEEEEcCCccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHH-cCC---CccCCCcEEEEEcCCCCC
Q psy14969 600 TVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRK-NHA---HLLDEGVVNIMRTLPPQQ 665 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLV---GP~GrVtGIDISpeAVE~ARKNLKk-aG~---~VaSsgRI~LI~GDAeda 665 (687)
.|+-+|+|-|=+.....+++ +-.-+|++||-++.++.....+... ..| .....++|+++.+|....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence 58999999998875554433 3356899999997765555555432 233 123467899999996543
No 419
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=33.95 E-value=1.1e+02 Score=32.40 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=50.7
Q ss_pred cCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCc
Q psy14969 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654 (687)
Q Consensus 578 ISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLV---GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgR 654 (687)
+..|.-...+.+++. .+ .+..|+|+|+--|..+...|..+ |...+|+++|++=..+..|... ..+
T Consensus 52 ~k~p~D~~~yQellw-~~-~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~ 119 (237)
T COG3510 52 IKSPSDMWNYQELLW-EL-QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPD 119 (237)
T ss_pred cCCHHHHHHHHHHHH-hc-CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCC
Confidence 456665666666664 23 45789999999998888877653 4456999999986665554443 136
Q ss_pred EEEEEcCCC
Q psy14969 655 VNIMRTLPP 663 (687)
Q Consensus 655 I~LI~GDAe 663 (687)
|.++.|+..
T Consensus 120 i~f~egss~ 128 (237)
T COG3510 120 ILFIEGSST 128 (237)
T ss_pred eEEEeCCCC
Confidence 788888743
No 420
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.35 E-value=3.4e+02 Score=27.61 Aligned_cols=45 Identities=18% Similarity=0.109 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHH
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENI 642 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNL 642 (687)
.+++||-.|.+ |.++..+++.+ ..+.+|+.++.+++.++...+.+
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l 53 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAEL 53 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 57789988865 55666666544 33468999999988766555444
No 421
>PLN02214 cinnamoyl-CoA reductase
Probab=32.98 E-value=2.9e+02 Score=28.87 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHH-HHHHHHcCCCccCCCcEEEEEcCCCC--------CC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFS-KENIRKNHAHLLDEGVVNIMRTLPPQ--------QD 666 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~A-RKNLKkaG~~VaSsgRI~LI~GDAed--------aP 666 (687)
.+++||-.|+ +|+++..+++.+ ..+.+|+++..+....... ...+.. . ..++.++.+|..+ ..
T Consensus 9 ~~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~----~~~~~~~~~Dl~d~~~~~~~~~~ 81 (342)
T PLN02214 9 AGKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG--G----KERLILCKADLQDYEALKAAIDG 81 (342)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC--C----CCcEEEEecCcCChHHHHHHHhc
Confidence 5678999884 799998887654 2235899998876532211 111211 1 1357777777543 23
Q ss_pred ccEEEEEecCC
Q psy14969 667 ASRVNISVEPQ 677 (687)
Q Consensus 667 FDLILVVfAP~ 677 (687)
.|.|+-.+++.
T Consensus 82 ~d~Vih~A~~~ 92 (342)
T PLN02214 82 CDGVFHTASPV 92 (342)
T ss_pred CCEEEEecCCC
Confidence 68887777665
No 422
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=32.81 E-value=2.7e+02 Score=30.12 Aligned_cols=75 Identities=21% Similarity=0.100 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCH---------------------HHHHHHHHHHHHcCCCccCCCc
Q psy14969 597 PGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHME---------------------YLVNFSKENIRKNHAHLLDEGV 654 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISp---------------------eAVE~ARKNLKkaG~~VaSsgR 654 (687)
...+||-||||. |...+......| -++++-+|.+. .-++.|++++.+.+. .-+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp----~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS----EVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC----CcE
Confidence 467899999983 222222222223 35899999874 235666777777654 223
Q ss_pred EEEEEcCCC-------CCCccEEEEEecC
Q psy14969 655 VNIMRTLPP-------QQDASRVNISVEP 676 (687)
Q Consensus 655 I~LI~GDAe-------daPFDLILVVfAP 676 (687)
+..+..+.. -..+|+|+...+.
T Consensus 98 i~~~~~~~~~~~~~~~~~~~DlVid~~D~ 126 (338)
T PRK12475 98 IVPVVTDVTVEELEELVKEVDLIIDATDN 126 (338)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEEcCCC
Confidence 444443322 1347877666543
No 423
>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.
Probab=32.69 E-value=25 Score=28.77 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=24.6
Q ss_pred HHHHHHhccEEEEEeCCeeccccchhhhh
Q psy14969 239 LIEEMIKNQVFCIKLGDIVGCDFCGKQLL 267 (687)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (687)
.++.|.++..|+.--+|.|-|.+|+..+-
T Consensus 17 ~~~~La~~Gfyy~~~~d~v~C~~C~~~~~ 45 (69)
T cd00022 17 TPEKLAEAGFYYTGRGDEVKCFFCGLELK 45 (69)
T ss_pred CHHHHHHcCCeEcCCCCEEEeCCCCCCcc
Confidence 47889999999877789999999998663
No 424
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=32.61 E-value=2.9e+02 Score=29.94 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCc-cHHH-HHHHHhcCCCcEEEEEeCC
Q psy14969 597 PGDTVLDVGTGS-GYTA-ACLGYMVRPHGKVYSLDHM 631 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLT-AaLArLVGP~GrVtGIDIS 631 (687)
...+||-||||. |... ..|++. | -++++.+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-G-vg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-G-VGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-C-CCeEEEEeCC
Confidence 457899999982 3322 223322 3 4689999987
No 425
>KOG3924|consensus
Probab=32.13 E-value=60 Score=36.78 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCC--Ccc--CCCcE
Q psy14969 580 SPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA--HLL--DEGVV 655 (687)
Q Consensus 580 aP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~--~Va--SsgRI 655 (687)
.|...+.+.+.+ .+.+++...|+|.|-|-....+|..++ ...-+|+++.+...+.|..+.....- ..+ .-+.+
T Consensus 177 ~~~ql~si~dEl--~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~ 253 (419)
T KOG3924|consen 177 QLEQLRSIVDEL--KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI 253 (419)
T ss_pred hHHHHHHHHHHh--ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce
Confidence 344556666666 788999999999999999988887765 33567999988887777765543221 000 13457
Q ss_pred EEEEcCCC
Q psy14969 656 NIMRTLPP 663 (687)
Q Consensus 656 ~LI~GDAe 663 (687)
.+++|+..
T Consensus 254 ~~i~gsf~ 261 (419)
T KOG3924|consen 254 ETIHGSFL 261 (419)
T ss_pred eecccccC
Confidence 77777743
No 426
>PRK07201 short chain dehydrogenase; Provisional
Probab=32.01 E-value=2.6e+02 Score=31.38 Aligned_cols=76 Identities=14% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CeEEEEcCCccHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVR---PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVG---P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
++||-.| |||+++..+++.+- ...+|++++.++.. ..........+. .++.++.+|..+
T Consensus 1 m~ILVTG-atGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~~~~~~~~-----~~v~~~~~Dl~~~~~~~~~~~~~ 73 (657)
T PRK07201 1 MRYFVTG-GTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEALAAYWGA-----DRVVPLVGDLTEPGLGLSEADIA 73 (657)
T ss_pred CeEEEeC-CccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHhcCC-----CcEEEEecccCCccCCcCHHHHH
Q ss_pred --CCccEEEEEecCCCcCc
Q psy14969 665 --QDASRVNISVEPQKSGE 681 (687)
Q Consensus 665 --aPFDLILVVfAP~K~gE 681 (687)
..+|.|+-.++......
T Consensus 74 ~l~~~D~Vih~Aa~~~~~~ 92 (657)
T PRK07201 74 ELGDIDHVVHLAAIYDLTA 92 (657)
T ss_pred HhcCCCEEEECceeecCCC
No 427
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=31.79 E-value=88 Score=30.79 Aligned_cols=56 Identities=21% Similarity=0.110 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhcCC-CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 583 FIASSLEPALLKLK-PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 583 VvAlLLElLkedLk-pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
+...+.+.+ +. +..+++|.=+|+|..+..+.... .+|+.-|+++.++...+.-++.
T Consensus 8 l~~~I~~~i---p~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 8 LAKWIIELI---PKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GHHHHHHHS----S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHhc
Confidence 344555554 22 68899999999999988876543 4899999999999988866655
No 428
>PRK06940 short chain dehydrogenase; Provisional
Probab=31.67 E-value=2.5e+02 Score=28.17 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=36.3
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
+.+|-.|+ |.++..+++.+..+.+|+.++.+++-++.+.+.++..+. ++.++..|.
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~------~~~~~~~Dv 58 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF------DVSTQEVDV 58 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC------eEEEEEeec
Confidence 35666665 457777777765567899999988766666555554332 455555554
No 429
>KOG0821|consensus
Probab=31.55 E-value=95 Score=33.46 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLP 662 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDA 662 (687)
..+-|.+||.|.|.+|..+..+.. .++..+|+++..+...+--.+.+ .+++.+.++|+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~--~RL~vVE~D~RFip~LQ~L~EAa------~~~~~IHh~D~ 107 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADV--ARLLVVEKDTRFIPGLQMLSEAA------PGKLRIHHGDV 107 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcch--hheeeeeeccccChHHHHHhhcC------CcceEEecccc
Confidence 456899999999999999876642 47888888887776554433322 34677777775
No 430
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=30.93 E-value=1.5e+02 Score=30.72 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHH
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYL 634 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeA 634 (687)
.+++||-.| |+|+++..+++.+- .+.+|++++.++..
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~ 40 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPT 40 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 468899999 67898888887652 34589999987653
No 431
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=30.81 E-value=2.3e+02 Score=28.48 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=33.5
Q ss_pred cCCCCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.+.++.+||-+|+| .|..+..+|+..+ ..|++++.+++..+.++
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 57788899999886 5666666666654 48999999988877663
No 432
>PRK06198 short chain dehydrogenase; Provisional
Probab=30.62 E-value=4.6e+02 Score=25.40 Aligned_cols=74 Identities=5% Similarity=-0.076 Sum_probs=43.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcE-EEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGK-VYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~Gr-VtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---------- 664 (687)
.+++||-+|.+ |.++..+++.+ ..+.+ |+.++.+++-.......+...+ .++.++..|...
T Consensus 5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK06198 5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG------AKAVFVQADLSDVEDCRRVVAA 77 (260)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHH
Confidence 46789988864 55666666554 22346 9999998766554444444333 245555555432
Q ss_pred -----CCccEEEEEecCC
Q psy14969 665 -----QDASRVNISVEPQ 677 (687)
Q Consensus 665 -----aPFDLILVVfAP~ 677 (687)
.+.|.++..+...
T Consensus 78 ~~~~~g~id~li~~ag~~ 95 (260)
T PRK06198 78 ADEAFGRLDALVNAAGLT 95 (260)
T ss_pred HHHHhCCCCEEEECCCcC
Confidence 2467776665443
No 433
>PRK05875 short chain dehydrogenase; Provisional
Probab=30.57 E-value=3.2e+02 Score=26.87 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|++ |.++..+++.+ ..+.+|++++.+++-.+...+.+...+. ..++.++.+|..
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~ 68 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKG----AGAVRYEPADVT 68 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccC----CCceEEEEcCCC
Confidence 46789999954 66777776544 2345899999987766555555443321 235666666653
No 434
>PRK07806 short chain dehydrogenase; Provisional
Probab=30.57 E-value=3.1e+02 Score=26.31 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=35.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCH-HHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHME-YLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISp-eAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|+. |.++..+++.+ ..+.+|+++..+. ...+.....++..+ .++.++.+|..
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~------~~~~~~~~D~~ 66 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG------GRASAVGADLT 66 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC------CceEEEEcCCC
Confidence 46789999964 55666665543 3345898888764 23444444444433 24566666644
No 435
>PRK06720 hypothetical protein; Provisional
Probab=30.55 E-value=3.3e+02 Score=26.26 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCccHHHHHHHH-hcCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGY-MVRPHGKVYSLDHMEYLVNFSKENIRKNH 646 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLAr-LVGP~GrVtGIDISpeAVE~ARKNLKkaG 646 (687)
.++.+|-.|.+.|. +..++. +...+.+|+.+|.+...++.+.+.+...+
T Consensus 15 ~gk~~lVTGa~~GI-G~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~ 64 (169)
T PRK06720 15 AGKVAIVTGGGIGI-GRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG 64 (169)
T ss_pred CCCEEEEecCCChH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 46788888876554 333333 33334689999998877766656665433
No 436
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=30.51 E-value=2.2e+02 Score=29.13 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=34.0
Q ss_pred cCCCCCeEEEEcC--CccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGT--GSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGC--GTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+++|++||=.|+ |.|..++.+|+..+ .+|++++.+++-.+.+++
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 5789999999986 45666666777765 579999988877666654
No 437
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=29.84 E-value=1.5e+02 Score=33.40 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=24.8
Q ss_pred CCCCCeEEEEcCCccHHHHHH-HHhcCCCcEEEEEeCC
Q psy14969 595 LKPGDTVLDVGTGSGYTAACL-GYMVRPHGKVYSLDHM 631 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaL-ArLVGP~GrVtGIDIS 631 (687)
..+|++|+-||+|...++++. +...+ .+|+.+|..
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence 457899999999976555444 44433 479999953
No 438
>COG3502 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.74 E-value=29 Score=33.18 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=34.3
Q ss_pred ccccccCCCCCCCceeecCCChhhHhhhcccceeEEeecCccCCc
Q psy14969 444 SHLKWHPSDSGDDAIHYYHPTPLHQVLQENERGVILQYDGTYNLC 488 (687)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~ 488 (687)
+-|+|-||..|+---|.|-|.||..|+++-. .=+--||.|.+-
T Consensus 70 ~~lryE~srgg~lFPHLYgpL~l~AV~~~~p--l~l~~DG~~~~p 112 (115)
T COG3502 70 DELRYEPSRGGALFPHLYGPLPLDAVTWVAP--LPLGADGLFQFP 112 (115)
T ss_pred CcceeecCCCCccccccccccchhHheeccc--CCCCCCCCCCCC
Confidence 4689999999999999999999999988643 334557777653
No 439
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=29.11 E-value=3.6e+02 Score=27.38 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCCC--------Cc
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQ--------DA 667 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAeda--------PF 667 (687)
.+++||-.| |+|+++..+++.+ ..+.+|+++..++.............+. ..++.++.+|..+. ..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~ 78 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGA----KERLKLFKADLLDEGSFELAIDGC 78 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCC----CCceEEEeCCCCCchHHHHHHcCC
Confidence 468899999 6788888887654 3345888887776543332222211121 24677787776542 36
Q ss_pred cEEEEEecCC
Q psy14969 668 SRVNISVEPQ 677 (687)
Q Consensus 668 DLILVVfAP~ 677 (687)
|.|+-.+++.
T Consensus 79 d~vih~A~~~ 88 (325)
T PLN02989 79 ETVFHTASPV 88 (325)
T ss_pred CEEEEeCCCC
Confidence 8776666543
No 440
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.04 E-value=1.5e+02 Score=30.37 Aligned_cols=46 Identities=28% Similarity=0.396 Sum_probs=33.9
Q ss_pred cCCCCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.++++.+||-.|+| .|..++.+|+..+ ...|+++|.++.-.+.+++
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH
Confidence 57789999999876 3566666777765 2369999999877766654
No 441
>PRK12743 oxidoreductase; Provisional
Probab=28.88 E-value=5.6e+02 Score=25.05 Aligned_cols=72 Identities=6% Similarity=-0.074 Sum_probs=43.1
Q ss_pred CCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEe-CCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLD-HMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLV-GP~GrVtGID-ISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
+++||-.|++ |.++..+++.+ ..+.+|+.+. .+....+.+.+.++..+. ++.++..|..+
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGV------RAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC------ceEEEEccCCCHHHHHHHHHHH
Confidence 4578888964 55666666554 3345787764 455556655555555442 56666666442
Q ss_pred ----CCccEEEEEecC
Q psy14969 665 ----QDASRVNISVEP 676 (687)
Q Consensus 665 ----aPFDLILVVfAP 676 (687)
.+.|.++..+..
T Consensus 75 ~~~~~~id~li~~ag~ 90 (256)
T PRK12743 75 IQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHcCCCCEEEECCCC
Confidence 357877666543
No 442
>PLN00198 anthocyanidin reductase; Provisional
Probab=28.88 E-value=2.8e+02 Score=28.40 Aligned_cols=77 Identities=16% Similarity=0.058 Sum_probs=45.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------C
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------Q 665 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------a 665 (687)
+..+++||-.| |+|+++..|++.+- .+.+|+++..+......... +..... .+++.++.+|..+ .
T Consensus 6 ~~~~~~vlItG-~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~ 79 (338)
T PLN00198 6 PTGKKTACVIG-GTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQE----LGDLKIFGADLTDEESFEAPIA 79 (338)
T ss_pred CCCCCeEEEEC-CchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCC----CCceEEEEcCCCChHHHHHHHh
Confidence 33467899888 67999998887653 23488888777543222111 111110 1357778877543 2
Q ss_pred CccEEEEEecCC
Q psy14969 666 DASRVNISVEPQ 677 (687)
Q Consensus 666 PFDLILVVfAP~ 677 (687)
.+|.|+-.+++.
T Consensus 80 ~~d~vih~A~~~ 91 (338)
T PLN00198 80 GCDLVFHVATPV 91 (338)
T ss_pred cCCEEEEeCCCC
Confidence 468777777654
No 443
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=28.63 E-value=1.5e+02 Score=30.50 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=31.9
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.+.+|.+||-.|+|+ |..++.+|+..+ ...|++++.+++-.+.++
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH
Confidence 467889999998754 445555666665 224789999988777664
No 444
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.34 E-value=2.6e+02 Score=30.21 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCH-HHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---CCccEEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHME-YLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---QDASRVN 671 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISp-eAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---aPFDLIL 671 (687)
.+++|+-+|.|...+ .+|+.+ ..+..|+++|.+. ..++...+.+...+. .++.++..+ ..+|.|+
T Consensus 4 ~~k~v~iiG~g~~G~--~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~d~vv 73 (450)
T PRK14106 4 KGKKVLVVGAGVSGL--ALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGI--------ELVLGEYPEEFLEGVDLVV 73 (450)
T ss_pred CCCEEEEECCCHHHH--HHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC--------EEEeCCcchhHhhcCCEEE
Confidence 467899999876333 444332 2356999999985 334333344555444 344444332 3578777
Q ss_pred EEec
Q psy14969 672 ISVE 675 (687)
Q Consensus 672 VVfA 675 (687)
....
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 6544
No 445
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=28.05 E-value=3.2e+02 Score=26.66 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=43.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC-----------
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ----------- 664 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed----------- 664 (687)
.+++||=.|+++| ++..+++.+ ..+.+|+.++.+. -.+.+.+.+...+ .++.++..|..+
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~D~~~~~~i~~~~~~~ 85 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEG------RKVTFVQVDLTKPESAEKVVKEA 85 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence 5788999997655 555555443 3356888898873 3344444444433 256666666542
Q ss_pred ----CCccEEEEEecC
Q psy14969 665 ----QDASRVNISVEP 676 (687)
Q Consensus 665 ----aPFDLILVVfAP 676 (687)
.++|.++..+..
T Consensus 86 ~~~~g~id~li~~ag~ 101 (258)
T PRK06935 86 LEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHcCCCCEEEECCCC
Confidence 257877665544
No 446
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=27.91 E-value=1.6e+02 Score=30.76 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=33.9
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+.++.+||-.|+|. |..++.+|+..+ ...|++++.++.-.+.+++
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH
Confidence 467889999998764 667777787776 2369999998877665543
No 447
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.68 E-value=2.1e+02 Score=29.22 Aligned_cols=45 Identities=33% Similarity=0.476 Sum_probs=33.7
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGK-VYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~Gr-VtGIDISpeAVE~ARK 640 (687)
.++++.+||-.|+|+ |..++.+|+..+ .+ |++++.++.-.+.+++
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH
Confidence 678899999988775 677777777765 34 8899888777666543
No 448
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=27.52 E-value=1.4e+02 Score=30.22 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 597 PGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
++.+||-.|+|. |..++.+|+..+ -.+|++++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH
Confidence 788999988876 667777777764 1268999998887775544
No 449
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=27.35 E-value=3e+02 Score=26.65 Aligned_cols=44 Identities=30% Similarity=0.505 Sum_probs=32.3
Q ss_pred cCCCCCeEEEEcC--CccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGT--GSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGC--GTGYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.+.++..||-+|+ +.|..++.+++..+ ..|++++.++...+.++
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALAR 181 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHH
Confidence 5678899999997 35556666666654 57999998887766653
No 450
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=27.27 E-value=3.3e+02 Score=26.42 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|++ |.++..+++.+ ..+.+|+.++.++.. +...+.+...+. ++.++..|..
T Consensus 7 ~~k~vlVtGas-~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~------~~~~~~~D~~ 66 (260)
T PRK12823 7 AGKVVVVTGAA-QGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAGG------EALALTADLE 66 (260)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcCC------eEEEEEEeCC
Confidence 46789999965 55666666543 345689999998643 333344444332 4555555544
No 451
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=27.25 E-value=2.9e+02 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=30.8
Q ss_pred cCCCCCeEEEEcCCccHHHHH---HHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGSGYTAAC---LGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAa---LArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+.++.+||-.|+| .++.+ +|+..+ .+|++++.+++..+.+++
T Consensus 152 ~~~~g~~vlV~g~g--~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 152 PITPGDKVAVLGDG--KLGLLIAQVLALTG--PDVVLVGRHSEKLALARR 197 (319)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 56788999998754 44444 455544 479999999888877765
No 452
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=27.24 E-value=1.7e+02 Score=32.42 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=43.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC---CCccEEEE
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ---QDASRVNI 672 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed---aPFDLILV 672 (687)
++++||-.| |+|+++..|++.+ ..+-+|+++|...... ..+.... ....+++++.+|... ..+|.|+-
T Consensus 119 ~~mkILVTG-atGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~---~~~~~~~----~~~~~~~~~~~Di~~~~~~~~D~ViH 190 (436)
T PLN02166 119 KRLRIVVTG-GAGFVGSHLVDKLIGRGDEVIVIDNFFTGR---KENLVHL----FGNPRFELIRHDVVEPILLEVDQIYH 190 (436)
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcc---HhHhhhh----ccCCceEEEECccccccccCCCEEEE
Confidence 568999999 7999999888754 2235899999652211 1111111 011246666666432 45787776
Q ss_pred EecC
Q psy14969 673 SVEP 676 (687)
Q Consensus 673 VfAP 676 (687)
.+++
T Consensus 191 lAa~ 194 (436)
T PLN02166 191 LACP 194 (436)
T ss_pred Ccee
Confidence 6654
No 453
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=26.94 E-value=2.8e+02 Score=27.78 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=36.0
Q ss_pred EEEEcCCccHHHHHHHHhcCCC---cEEEEEeCCHH---HHHHHHHHHHHcCCCccC--CCcEEEEEcCCC
Q psy14969 601 VLDVGTGSGYTAACLGYMVRPH---GKVYSLDHMEY---LVNFSKENIRKNHAHLLD--EGVVNIMRTLPP 663 (687)
Q Consensus 601 VLDIGCGTGYLTAaLArLVGP~---GrVtGIDISpe---AVE~ARKNLKkaG~~VaS--sgRI~LI~GDAe 663 (687)
||=.| |||+++..+++.+-.. .+|+++..++. ..+..++.++...+.... ..++.++.+|..
T Consensus 2 vlvtG-atG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~ 71 (367)
T TIGR01746 2 VLLTG-ATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLS 71 (367)
T ss_pred EEEec-cchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcC
Confidence 55455 6899998888765323 47999987754 223333334333321100 147888888854
No 454
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=26.83 E-value=1.8e+02 Score=29.42 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=32.4
Q ss_pred cCCCCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+.++.+||..|+| .|..++.+|+..+ ...|++++.++...+.+++
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Confidence 56788999998765 3666667777764 2378898888776665543
No 455
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=26.78 E-value=2e+02 Score=30.47 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=37.7
Q ss_pred CeEEEEcCCccHHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHHH-HHHcCCCccCCCcEEEEEcC-CCCCCccEEEEEe
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRP--HGKVYSLDHMEYLVNFSKEN-IRKNHAHLLDEGVVNIMRTL-PPQQDASRVNISV 674 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP--~GrVtGIDISpeAVE~ARKN-LKkaG~~VaSsgRI~LI~GD-AedaPFDLILVVf 674 (687)
++|--||+| +.+..+|..+.. .+.|+.+|+.+++.+ ++.. +...+.......++.+. ++ ..-...|+|++++
T Consensus 2 ~KV~VIGaG--~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~d~~~~~~~~~~~~~i~~t-~d~~~~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAG--FVGATTAFRLAEKELADLVLLDVVEGIPQ-GKALDMYEASPVGGFDTKVTGT-NNYADTANSDIVVITA 77 (305)
T ss_pred CEEEEECcC--HHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHHhhhhhhhccCCCcEEEec-CCHHHhCCCCEEEEcC
Confidence 367778875 554444443211 237999999877533 3321 11111101112344432 33 2235678888876
Q ss_pred cCCC
Q psy14969 675 EPQK 678 (687)
Q Consensus 675 AP~K 678 (687)
..+.
T Consensus 78 g~p~ 81 (305)
T TIGR01763 78 GLPR 81 (305)
T ss_pred CCCC
Confidence 5433
No 456
>PLN02780 ketoreductase/ oxidoreductase
Probab=26.67 E-value=2.4e+02 Score=29.50 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
.|..+|-.|+++| ++..+|+.+ ..+.+|+.++.+++.++...+.++.
T Consensus 52 ~g~~~lITGAs~G-IG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDG-IGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Confidence 4788999997555 555555443 3345899999999988877777665
No 457
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=26.56 E-value=2.4e+02 Score=29.76 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=30.0
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~AR 639 (687)
.++++.+||-+|+|. |..++.+|+..+ ..+|++++.+++-.+.|+
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~a~ 232 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCKAAG-ASRIIAVDINKDKFAKAK 232 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH
Confidence 577899999987642 333444555554 127999998887766663
No 458
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=26.51 E-value=5.8e+02 Score=24.94 Aligned_cols=58 Identities=7% Similarity=-0.014 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|+. |.++..+++.+ ..+.+|++++.... +...+.+...+ .++..+..|..
T Consensus 9 ~~k~~lItG~~-~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~------~~~~~~~~Dl~ 67 (253)
T PRK08993 9 EGKVAVVTGCD-TGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG------RRFLSLTADLR 67 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC------CeEEEEECCCC
Confidence 46789999965 55666666544 33568999887643 22233343333 24555666643
No 459
>PRK15076 alpha-galactosidase; Provisional
Probab=26.46 E-value=1.8e+02 Score=32.57 Aligned_cols=75 Identities=21% Similarity=0.158 Sum_probs=43.3
Q ss_pred eEEEEcCCc-cHHHHHHHHhc----CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEE-EcC--CCCCCccEEE
Q psy14969 600 TVLDVGTGS-GYTAACLGYMV----RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM-RTL--PPQQDASRVN 671 (687)
Q Consensus 600 RVLDIGCGT-GYLTAaLArLV----GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI-~GD--AedaPFDLIL 671 (687)
+|-=||+|+ |+....+..++ -+...|+-+|++++.++.+...++..-... ...+.+. ..| ..-...|.|+
T Consensus 3 KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~--~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 3 KITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL--GASAKITATTDRREALQGADYVI 80 (431)
T ss_pred EEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHhCCCCEEe
Confidence 677899999 76655533332 123489999999999887666655432111 1123343 334 1123467776
Q ss_pred EEecC
Q psy14969 672 ISVEP 676 (687)
Q Consensus 672 VVfAP 676 (687)
..+..
T Consensus 81 ~ti~v 85 (431)
T PRK15076 81 NAIQV 85 (431)
T ss_pred Eeeee
Confidence 66554
No 460
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=26.42 E-value=3.4e+02 Score=27.82 Aligned_cols=60 Identities=8% Similarity=-0.064 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|+. |.++..+++.+ ..+.+|+.++.+++-.+.+.+.+... ..++.++..|..
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~ 65 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP------PDSYTIIHIDLG 65 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc------CCceEEEEecCC
Confidence 46788988864 55666655543 23468999999887666555554321 235666666643
No 461
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=26.39 E-value=1.7e+02 Score=30.38 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=17.8
Q ss_pred EEcCCccHHHHHHHHhcC-CC-cEEEEEeCCHHHH
Q psy14969 603 DVGTGSGYTAACLGYMVR-PH-GKVYSLDHMEYLV 635 (687)
Q Consensus 603 DIGCGTGYLTAaLArLVG-P~-GrVtGIDISpeAV 635 (687)
-||+|. .+..+|..+. .. +.|+.+|++++..
T Consensus 3 IIGaG~--vG~~ia~~la~~~l~eV~L~Di~e~~~ 35 (300)
T cd01339 3 IIGAGN--VGATLAQLLALKELGDVVLLDIVEGLP 35 (300)
T ss_pred EECCCH--HHHHHHHHHHhCCCcEEEEEeCCCcHH
Confidence 367754 4433433321 11 2899999998754
No 462
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=26.36 E-value=3.6e+02 Score=27.08 Aligned_cols=76 Identities=18% Similarity=0.070 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEe-------------------CCHHHHHHHHHHHHHcCCCccCCCcEE
Q psy14969 597 PGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLD-------------------HMEYLVNFSKENIRKNHAHLLDEGVVN 656 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGID-------------------ISpeAVE~ARKNLKkaG~~VaSsgRI~ 656 (687)
...+|+=||||. |...+....+.| -++++-+| +-..-++.+++++++.+. .-++.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np----~~~i~ 94 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP----DVEIE 94 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC----CCEEE
Confidence 457899999983 333333333333 35788884 444556777778877654 12333
Q ss_pred EEEcCCC-------CCCccEEEEEecCC
Q psy14969 657 IMRTLPP-------QQDASRVNISVEPQ 677 (687)
Q Consensus 657 LI~GDAe-------daPFDLILVVfAP~ 677 (687)
.+..... -..+|+|+...+..
T Consensus 95 ~~~~~i~~~~~~~~~~~~DvVi~~~d~~ 122 (228)
T cd00757 95 AYNERLDAENAEELIAGYDLVLDCTDNF 122 (228)
T ss_pred EecceeCHHHHHHHHhCCCEEEEcCCCH
Confidence 3332221 13478877665543
No 463
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=26.34 E-value=2.1e+02 Score=29.91 Aligned_cols=36 Identities=17% Similarity=-0.089 Sum_probs=26.1
Q ss_pred CeEEEEcCC--ccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy14969 599 DTVLDVGTG--SGYTAACLGYMVRPHGKVYSLDHMEYLVNF 637 (687)
Q Consensus 599 ~RVLDIGCG--TGYLTAaLArLVGP~GrVtGIDISpeAVE~ 637 (687)
++|+=||+| .|+++..|++.. ..|+.++..++.++.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G---~~V~lv~r~~~~~~~ 40 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG---LPVRLILRDRQRLAA 40 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC---CCeEEEEechHHHHH
Confidence 578999998 366777777653 379999998755543
No 464
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.26 E-value=3.6e+02 Score=29.21 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCH-------------------HHHHHHHHHHHHcCC
Q psy14969 597 PGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHME-------------------YLVNFSKENIRKNHA 647 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISp-------------------eAVE~ARKNLKkaG~ 647 (687)
...+||-||||. |...+....+.| -++++-+|.+. .-++.|++++++.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np 96 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP 96 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC
Confidence 457999999983 333322222333 36888888775 456778888887765
No 465
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=26.21 E-value=3.2e+02 Score=26.82 Aligned_cols=58 Identities=7% Similarity=0.113 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCccHHHHHHHH-hcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGY-MVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLAr-LVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.++++|-.|+++| ++..+++ ++..+.+|+.++.+.. +.+.+.++..+ .++.++..|..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~------~~~~~~~~Dl~ 65 (251)
T PRK12481 7 NGKVAIITGCNTG-LGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG------RKFHFITADLI 65 (251)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC------CeEEEEEeCCC
Confidence 5788999997655 5555554 3444568888887642 23333444433 25566666643
No 466
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=25.93 E-value=1.6e+02 Score=30.19 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=29.7
Q ss_pred CeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKk 644 (687)
.+|.=||+| .++..+|..+. .+..|+.+|++++.++.+++++.+
T Consensus 4 ~~I~ViGaG--~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~ 48 (291)
T PRK06035 4 KVIGVVGSG--VMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIES 48 (291)
T ss_pred cEEEEECcc--HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Confidence 367778876 45544444331 124899999999999988776554
No 467
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=25.87 E-value=4.3e+02 Score=31.27 Aligned_cols=81 Identities=11% Similarity=-0.000 Sum_probs=50.3
Q ss_pred cCCCCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC---ccCCCcEEEEEcCCCC-----
Q psy14969 594 KLKPGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAH---LLDEGVVNIMRTLPPQ----- 664 (687)
Q Consensus 594 dLkpG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~---VaSsgRI~LI~GDAed----- 664 (687)
+.+.|.+||-.|. +|+++..+++.+ ..+.+|++++.+.+-++.....+....+. .....++.++.+|..+
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 4557888998885 577887776554 33468999999987765554444332210 0012357888888763
Q ss_pred ---CCccEEEEEec
Q psy14969 665 ---QDASRVNISVE 675 (687)
Q Consensus 665 ---aPFDLILVVfA 675 (687)
...|.|+..+.
T Consensus 155 ~aLggiDiVVn~AG 168 (576)
T PLN03209 155 PALGNASVVICCIG 168 (576)
T ss_pred HHhcCCCEEEEccc
Confidence 34676655543
No 468
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.86 E-value=4.4e+02 Score=24.84 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=40.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVR-PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVG-P~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
++++||=.|+ +|+++..+++.+. .+.+|++++.++...+.....+...+. ++.++..|..
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~~ 64 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG------EARVLVFDVS 64 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC------ceEEEEccCC
Confidence 3568998885 7888887776542 234799999998877665555554432 5566666643
No 469
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=25.81 E-value=1.4e+02 Score=34.56 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 597 PGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
++.+||-+|+|. |..++.+++..+ +.|+++|.++...+.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 578999999996 466666677765 479999999997776664
No 470
>PRK08303 short chain dehydrogenase; Provisional
Probab=25.64 E-value=3.2e+02 Score=28.35 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=23.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHM 631 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDIS 631 (687)
.++++|-.|+++| ++..+++.+ ..+.+|+.++.+
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecc
Confidence 4789999997766 555555443 335689998887
No 471
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=25.61 E-value=1.5e+02 Score=31.85 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=35.4
Q ss_pred cCCCCCeEEEEcC-C-ccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGT-G-SGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 594 dLkpG~RVLDIGC-G-TGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARKN 641 (687)
.+++|++||-+|. | -|..++.+|+..+- ..+|+++|.+++-++.|++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4678899999973 3 56666667776531 13799999999998888775
No 472
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=25.12 E-value=3.9e+02 Score=25.65 Aligned_cols=58 Identities=7% Similarity=0.001 Sum_probs=34.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||=.|++ |.++..+++.+ ..+.+|+.++.++. +.+.+.+...+ .++.++..|..
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~------~~~~~~~~D~~ 62 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG------RRFLSLTADLS 62 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC------CceEEEECCCC
Confidence 47889999975 45666666554 33458999998752 33334444433 24566666643
No 473
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=25.06 E-value=4.3e+02 Score=25.38 Aligned_cols=57 Identities=11% Similarity=-0.049 Sum_probs=36.4
Q ss_pred eEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 600 TVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
++|-+|+ +|.++..+++.+ ....+|+.++.++..++...+.+...+. ++.++..|..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~------~~~~~~~Dl~ 59 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG------KAVAYKLDVS 59 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC------eEEEEEcCCC
Confidence 5777785 566777666554 3346899999887766665555555442 5666666643
No 474
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.99 E-value=1.1e+02 Score=32.44 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=34.1
Q ss_pred EEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 601 VLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 601 VLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
|+|+-||.|.++.-+.++.- -.|.++|+++.+++.-+.|...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~~ 42 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFGN 42 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCCC
Confidence 68999999999988876642 2567899999999988888654
No 475
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.85 E-value=1.7e+02 Score=30.43 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=29.6
Q ss_pred eEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 600 TVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
+|--||+| .++..+|..+ ..+..|+.+|++++.++.+.+++.+
T Consensus 7 ~V~ViGaG--~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 7 RVGVVGAG--QMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred EEEEEccc--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH
Confidence 67888887 3333333321 1235899999999999998877654
No 476
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=24.84 E-value=2e+02 Score=30.29 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=27.0
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHH
Q psy14969 595 LKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYL 634 (687)
Q Consensus 595 LkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeA 634 (687)
+++|++||-.|+|. |..++.+|+..+ ++|++++.+++-
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~ 219 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNK 219 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcch
Confidence 46789999998863 555566677665 578888877653
No 477
>PRK07024 short chain dehydrogenase; Provisional
Probab=24.31 E-value=3.4e+02 Score=26.57 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=35.8
Q ss_pred CCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 598 GDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 598 G~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
+++||-.|+ +|.++..+++.+ ..+.+|+.++.+++.++...+.+.. .+++.++..|..
T Consensus 2 ~~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~ 60 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-------AARVSVYAADVR 60 (257)
T ss_pred CCEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-------CCeeEEEEcCCC
Confidence 357888886 455666665543 3346999999998776554443321 125666766654
No 478
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=24.30 E-value=64 Score=36.75 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=46.4
Q ss_pred CeEEEEcCCccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHH---HHHHcCC-----CccCCCcEEEEEcCCCCCCccE
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRP-HGKVYSLDHMEYLVNFSKE---NIRKNHA-----HLLDEGVVNIMRTLPPQQDASR 669 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP-~GrVtGIDISpeAVE~ARK---NLKkaG~-----~VaSsgRI~LI~GDAedaPFDL 669 (687)
.+|--|| -||.+..+|.+.+. +..|+|+||++..++.-.+ .+..-+. .+++.+++............|+
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCE
Confidence 4555555 57988888776543 3689999999998875432 1111111 1334555555433322346788
Q ss_pred EEEEecCCCc
Q psy14969 670 VNISVEPQKS 679 (687)
Q Consensus 670 ILVVfAP~K~ 679 (687)
+++.+-++-.
T Consensus 88 ~iI~VPTPl~ 97 (436)
T COG0677 88 FIICVPTPLK 97 (436)
T ss_pred EEEEecCCcC
Confidence 8887765543
No 479
>cd00498 Hsp33 Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat shock), the Cys are reversibly oxidized to disulfide bonds, which causes the chaperone activity to be turned on. Hsp33 is homodimeric in its functional form.
Probab=24.29 E-value=47 Score=34.78 Aligned_cols=25 Identities=36% Similarity=0.947 Sum_probs=18.7
Q ss_pred ecHHHHHHHHhccEEEEEeCCe-eccccchhh
Q psy14969 235 RSEDLIEEMIKNQVFCIKLGDI-VGCDFCGKQ 265 (687)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 265 (687)
=.++-+++|++++ |.| |-|+|||+.
T Consensus 246 Lg~~El~~i~~e~------g~iev~C~FC~~~ 271 (275)
T cd00498 246 LGKEELADMIEED------GGIEVTCEFCGEK 271 (275)
T ss_pred CCHHHHHHHHHcC------CCEEEEEeCCCCE
Confidence 3566678888876 554 889999974
No 480
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=24.28 E-value=1.8e+02 Score=29.23 Aligned_cols=44 Identities=32% Similarity=0.398 Sum_probs=31.8
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGK-VYSLDHMEYLVNFSK 639 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~Gr-VtGIDISpeAVE~AR 639 (687)
.+.++.+||-+|+|. |..++.+|+..+ .+ |++++.+++..+.++
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAK 201 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHH
Confidence 577889999998652 556666666654 34 888999988776654
No 481
>KOG1331|consensus
Probab=24.22 E-value=33 Score=37.14 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
...|..+||+|||.|-++.. .|...++|.|+...++..|++
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~ 83 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKR 83 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhcccccc
Confidence 34588999999999977543 255678999999999887765
No 482
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=24.12 E-value=2.1e+02 Score=29.67 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCCC---cEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCCC--------C
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRPH---GKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQ--------Q 665 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP~---GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAed--------a 665 (687)
.+++||-.| |+|+++..+++.+... .+|++++.+........+.+ . ..++.++.+|..+ .
T Consensus 3 ~~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~-----~~~~~~v~~Dl~d~~~l~~~~~ 73 (324)
T TIGR03589 3 NNKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---P-----APCLRFFIGDVRDKERLTRALR 73 (324)
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---C-----CCcEEEEEccCCCHHHHHHHHh
Confidence 467899888 5789888888765322 47999988754332211111 1 1357777777653 2
Q ss_pred CccEEEEEecC
Q psy14969 666 DASRVNISVEP 676 (687)
Q Consensus 666 PFDLILVVfAP 676 (687)
.+|.|+-.++.
T Consensus 74 ~iD~Vih~Ag~ 84 (324)
T TIGR03589 74 GVDYVVHAAAL 84 (324)
T ss_pred cCCEEEECccc
Confidence 36877665543
No 483
>PRK06701 short chain dehydrogenase; Provisional
Probab=23.47 E-value=3.9e+02 Score=27.18 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHH-HHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEY-LVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpe-AVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
.+++||-.|+ +|+++..+++.+ ....+|+.++.++. ..+.....++..+ .++.++..|..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~ 106 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG------VKCLLIPGDVS 106 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC------CeEEEEEccCC
Confidence 4678999996 455666666544 23468888887742 3333334444333 25666666654
No 484
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=23.40 E-value=3.7e+02 Score=25.87 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHH
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYLVNFSKENI 642 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeAVE~ARKNL 642 (687)
.+.++|=+|. +|..+..+++.+ ....+|+.+..+.+-++.....+
T Consensus 27 ~~~~vlVlGg-tG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 27 KGKTAVVLGG-TGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 5678999984 355555444433 22348999998877665554444
No 485
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=23.39 E-value=2.9e+02 Score=31.19 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=50.7
Q ss_pred CcccCcHHHHHHHHHHhhhcCCCCCeEEEEcCCccHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHHHHcCC
Q psy14969 575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR---PHGKVYSLDHMEYLVNFSKENIRKNHA 647 (687)
Q Consensus 575 GqTISaP~VvAlLLElLkedLkpG~RVLDIGCGTGYLTAaLArLVG---P~GrVtGIDISpeAVE~ARKNLKkaG~ 647 (687)
|...+...++..+.+.+.....++..|.|.-||||.+.....+... ..-.++|-|..+.+...|+.++.-.+.
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 4444556677777766522233667999999999998765443321 123689999999999999998765543
No 486
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=23.32 E-value=2.3e+02 Score=30.68 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhc-CCCcEEEEEeCCHHH
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMV-RPHGKVYSLDHMEYL 634 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLV-GP~GrVtGIDISpeA 634 (687)
...+++||-+| |||+++..+++.+ ..+..|++++.++.-
T Consensus 57 ~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 57 EPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 34678999999 7899998887654 234589999987643
No 487
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=23.28 E-value=2.7e+02 Score=28.20 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=32.4
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFS 638 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~A 638 (687)
.+.++.+||-.|+|+ |..+..+|+..+ ...|++++.++...+.+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVA 200 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHH
Confidence 567889999998766 677777777765 22489998887766655
No 488
>KOG3507|consensus
Probab=23.22 E-value=40 Score=29.27 Aligned_cols=23 Identities=39% Similarity=0.765 Sum_probs=20.2
Q ss_pred EEEeCCeeccccchhhhhhhhhh
Q psy14969 250 CIKLGDIVGCDFCGKQLLSKAVT 272 (687)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~ 272 (687)
-||.||.+-|..||-.+|-|+-|
T Consensus 31 ~lk~~D~irCReCG~RIlyKkRt 53 (62)
T KOG3507|consen 31 TLKRGDVIRCRECGYRILYKKRT 53 (62)
T ss_pred cccCCCcEehhhcchHHHHHHHH
Confidence 47899999999999999988755
No 489
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=23.05 E-value=3.7e+02 Score=27.33 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=32.5
Q ss_pred cCCCC--CeEEEEcC--CccHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPG--DTVLDVGT--GSGYTAACLGYMVRPHG-KVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG--~RVLDIGC--GTGYLTAaLArLVGP~G-rVtGIDISpeAVE~ARK 640 (687)
.+++| ++||=.|. |.|..+..+|+..+ . +|++++.+++-.+.+++
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G--~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLG--CSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH
Confidence 45555 89999986 45666666777765 4 79999998877666554
No 490
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=23.00 E-value=2.6e+02 Score=31.42 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=29.3
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHH
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPH--GKVYSLDHMEYLVNFSKEN 641 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~--GrVtGIDISpeAVE~ARKN 641 (687)
++||-|||| ..+...|+.+... ++|+..|.+++-.+.+...
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 578999994 5655555553222 5999999998887776654
No 491
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=22.92 E-value=1.8e+02 Score=31.69 Aligned_cols=42 Identities=21% Similarity=0.095 Sum_probs=30.0
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 597 PGDTVLDVGTG-SGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 597 pG~RVLDIGCG-TGYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
++.+|+-||+| .|..++..++..+ .+|+.+|.+++.++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHH
Confidence 35679999998 4566666666655 489999999876655543
No 492
>KOG1253|consensus
Probab=22.86 E-value=44 Score=38.70 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=58.3
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC---------CC
Q psy14969 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP---------QQ 665 (687)
Q Consensus 595 LkpG~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe---------da 665 (687)
-.++-+|||.=++||.-++..|+.++--..|++-|.++.+++.-++|++.++. .+.+...++|+. .-
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v----~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV----EDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc----hhhcccccchHHHHHHhcccccc
Confidence 34667999999999999999999986457899999999999999999999876 455555566643 23
Q ss_pred CccEEEE
Q psy14969 666 DASRVNI 672 (687)
Q Consensus 666 PFDLILV 672 (687)
.||+|.+
T Consensus 183 ~FDvIDL 189 (525)
T KOG1253|consen 183 FFDVIDL 189 (525)
T ss_pred ccceEec
Confidence 4776654
No 493
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=22.82 E-value=1.8e+02 Score=33.18 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=41.2
Q ss_pred eEEEEcCCccHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHHHHc---CC-----CccCCCcEEEEEcCCC-CCCccE
Q psy14969 600 TVLDVGTGSGYTAACLGYMVRPH-GKVYSLDHMEYLVNFSKENIRKN---HA-----HLLDEGVVNIMRTLPP-QQDASR 669 (687)
Q Consensus 600 RVLDIGCGTGYLTAaLArLVGP~-GrVtGIDISpeAVE~ARKNLKka---G~-----~VaSsgRI~LI~GDAe-daPFDL 669 (687)
+|--+| +||.++..+..+... -.|+++|+++.-++.-.+..... |+ .-...+|+.+-..... ....|+
T Consensus 2 kI~viG--tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv 79 (414)
T COG1004 2 KITVIG--TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADV 79 (414)
T ss_pred ceEEEC--CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCE
Confidence 344455 567765444333211 38999999999887654421110 11 1122566777655543 335677
Q ss_pred EEEEecCC
Q psy14969 670 VNISVEPQ 677 (687)
Q Consensus 670 ILVVfAP~ 677 (687)
+++.+.++
T Consensus 80 ~fIavgTP 87 (414)
T COG1004 80 VFIAVGTP 87 (414)
T ss_pred EEEEcCCC
Confidence 77765443
No 494
>PTZ00117 malate dehydrogenase; Provisional
Probab=22.76 E-value=2.5e+02 Score=29.92 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHHcCCCccCCCcEEEEE-cCCC-CCCccEEEEE
Q psy14969 597 PGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMR-TLPP-QQDASRVNIS 673 (687)
Q Consensus 597 pG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~-GDAe-daPFDLILVV 673 (687)
...+|.-||+|+ |+..+.++...+ -..++-+|++++.++ +.. +..............+.. ++.+ -...|+|++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~-~~~l~L~Di~~~~~~-g~~-lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVit 80 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKN-LGDVVLYDVIKGVPQ-GKA-LDLKHFSTLVGSNINILGTNNYEDIKDSDVVVIT 80 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCC-CCeEEEEECCCccch-hHH-HHHhhhccccCCCeEEEeCCCHHHhCCCCEEEEC
Confidence 456899999998 877666554433 257999999987654 332 211111111111233332 3322 2457888777
Q ss_pred ecCCC
Q psy14969 674 VEPQK 678 (687)
Q Consensus 674 fAP~K 678 (687)
+..+.
T Consensus 81 ag~~~ 85 (319)
T PTZ00117 81 AGVQR 85 (319)
T ss_pred CCCCC
Confidence 65544
No 495
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.59 E-value=4.2e+02 Score=26.91 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=26.4
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHH
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPH-GKVYSLDHMEYLVNFSK 639 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~-GrVtGIDISpeAVE~AR 639 (687)
++++=||+| -++..+|+.+... -.|+.||.+++.++.+.
T Consensus 1 m~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~ 40 (225)
T COG0569 1 MKIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFL 40 (225)
T ss_pred CEEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHh
Confidence 357778887 4555555544322 38999999999887633
No 496
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=22.02 E-value=1.3e+02 Score=31.98 Aligned_cols=44 Identities=18% Similarity=0.030 Sum_probs=36.2
Q ss_pred CeEEEEcCCccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 599 ~RVLDIGCGTGYLTAaLArLVGP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
.+++|+=||.|.+..-+..+.- --+.++|+++.+++.-+.|...
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~ 47 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPH 47 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCC
Confidence 5899999999999988876642 2688999999999888877663
No 497
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=22.01 E-value=6e+02 Score=28.91 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=26.1
Q ss_pred CCCCeEEEEcCCccHHHHH-HHHhcCCCcEEEEEeCCH
Q psy14969 596 KPGDTVLDVGTGSGYTAAC-LGYMVRPHGKVYSLDHME 632 (687)
Q Consensus 596 kpG~RVLDIGCGTGYLTAa-LArLVGP~GrVtGIDISp 632 (687)
..++++|-+|..+|+-.+. +|+.+..++.|++++...
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~~~~ 76 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVFFEK 76 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEecCc
Confidence 3467999999999886663 555554456788998643
No 498
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.82 E-value=7e+02 Score=23.90 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHhcCC-CcEEEE-EeCCHHHHHHHHHHHHHcCCCccCCCcEEEEEcCCC
Q psy14969 597 PGDTVLDVGTGSGYTAACLGYMVRP-HGKVYS-LDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPP 663 (687)
Q Consensus 597 pG~RVLDIGCGTGYLTAaLArLVGP-~GrVtG-IDISpeAVE~ARKNLKkaG~~VaSsgRI~LI~GDAe 663 (687)
++++||-.|. +|.++..+++.+.. +.+|+. .+.+....+.+.+.++..+ .++.++.+|..
T Consensus 3 ~~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~ 64 (250)
T PRK08063 3 SGKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG------RKALAVKANVG 64 (250)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CeEEEEEcCCC
Confidence 4578898885 57777777665432 347765 3566666655555555443 25666667653
No 499
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=21.82 E-value=2.2e+02 Score=31.51 Aligned_cols=45 Identities=18% Similarity=0.083 Sum_probs=29.8
Q ss_pred eEEEEcCCc-cHHHHH---HHHh-cCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14969 600 TVLDVGTGS-GYTAAC---LGYM-VRPHGKVYSLDHMEYLVNFSKENIRK 644 (687)
Q Consensus 600 RVLDIGCGT-GYLTAa---LArL-VGP~GrVtGIDISpeAVE~ARKNLKk 644 (687)
+|.-||.|+ |+..+. ++.. .-+..+|+-+|++++.++.....+..
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~ 51 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKK 51 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 577799999 554444 3322 11234899999999988877665544
No 500
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=21.63 E-value=2.2e+02 Score=30.75 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=31.4
Q ss_pred cCCCCCeEEEEcCCc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy14969 594 KLKPGDTVLDVGTGS-GYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640 (687)
Q Consensus 594 dLkpG~RVLDIGCGT-GYLTAaLArLVGP~GrVtGIDISpeAVE~ARK 640 (687)
.+.+|++||-.|+|. |.+++.+|+..+ ...|+++|.+++-++.|++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~ 228 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS 228 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH
Confidence 577889998887763 555556677665 2246677888877776654
Done!