RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14969
(687 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 95.9 bits (239), Expect = 1e-22
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 541 KTKELRDLMIKVDRKDF--CPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
+ ++ + M+ VDR++F Y D + + +++P A LE LL+LKPG
Sbjct: 17 ASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMMLE--LLELKPG 74
Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
VL++G+GSGY AC MV G V S++H+ LV ++ N+ K
Sbjct: 75 MRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGLE 124
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 81.8 bits (202), Expect = 1e-17
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 541 KTKELRDLMIKVDRKDFCPP--NRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
K+K + D ++ V R++F P Y D + + +++P +A E LL+LKPG
Sbjct: 21 KSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTE--LLELKPG 78
Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
VL++GTGSGY AA L +V G V S++ + L ++ +RK
Sbjct: 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK 124
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 78.4 bits (194), Expect = 2e-16
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 542 TKELRDLMIKVDRKDFCPPNRNPYHDYSVM-----LENCSYLNSPSFIASSLEPALLKLK 596
+ + + V R+ F P Y + + +++P +A L+ LL+LK
Sbjct: 17 DERVLKAFLAVPRELFVPA---AYKHLAYEDRALPIGCGQTISAPHMVARMLQ--LLELK 71
Query: 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
PGD VL++GTGSGY AA L +V G+V S++ +E L ++ N+
Sbjct: 72 PGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLET 116
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 69.1 bits (170), Expect = 3e-13
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 543 KELRDLMIKVDRKDFCPPNRNPYHDYSVM-----LENCSYLNSPSFIASSLEPALLKLKP 597
+ + + + R+ F P + + + ++ P +A E LL+LKP
Sbjct: 24 ERVLEAIEATPRELFVPE---AFKHKAYENRALPIGCGQTISQPYMVARMTE--LLELKP 78
Query: 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
GD VL++GTGSGY AA L ++VR +V+S++ ++ L +K +++
Sbjct: 79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQ 122
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 67.0 bits (164), Expect = 2e-12
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 541 KTKELRDLMIKVDRKDFCPPN--RNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
K+K++ D ++KV R F P Y D + + +++ +A E LL LK G
Sbjct: 20 KSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCE--LLDLKEG 77
Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
VL++GTGSGY AA + +V GKV +++ + L +K+ ++K
Sbjct: 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK 123
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 62.1 bits (151), Expect = 6e-11
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 541 KTKELRDLMIKVDRKDFCPPNRN--PYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPG 598
K++ ++ M+ V R++F P Y D + L + +++P +A E L++ +PG
Sbjct: 16 KSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCE--LIEPRPG 73
Query: 599 DTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIM 658
+L+VGTGSGY AA + GKVY+++ ++ L ++ +NI L GVV +
Sbjct: 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE----RLGYWGVVEVY 129
Query: 659 R 659
Sbjct: 130 H 130
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 52.4 bits (126), Expect = 4e-07
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 524 ALVGMLVALCVSEFDMYKTKELRDLMIKVDRKDFCP--PNRNPYHDYSVML----EN--- 574
ALV L + ++ + V R F P P Y ++ E+
Sbjct: 7 ALVDELRED-----GVIRSPRVEAAFRTVPRHLFAPGAPLEKAYAANRAVVTKRDEDGAA 61
Query: 575 CSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
S +++P A LE A ++PG VL++G+G GY AA L +V P G+V ++D
Sbjct: 62 LSSVSAPHIQAMMLEQA--GVEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVD 113
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 49.6 bits (119), Expect = 2e-06
Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 594 KLKPGDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLL 650
LK G TVLDVG GSG AA LG KV +D V ++EN R N LL
Sbjct: 159 LLKKGKTVLDVGCGSGILAIAAAKLG-----AKKVVGVDIDPQAVEAARENARLNGVELL 213
Query: 651 DE 652
+
Sbjct: 214 VQ 215
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 49.6 bits (119), Expect = 2e-06
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 595 LKPGDTVLDVGTGSGY---TAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH 648
+KPG+TVLDVG GSG A LG KV +D V +KEN N
Sbjct: 158 VKPGETVLDVGCGSGILAIAALKLG-----AKKVVGVDIDPVAVRAAKENAELNGVE 209
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 47.7 bits (114), Expect = 7e-06
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD-HMEYLVNFSKENIRKNHAHL 649
A L + PG VL+ GTGSG A L V P G V + + ++ ++EN+ +
Sbjct: 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSE---FG 143
Query: 650 LDEGV 654
L + V
Sbjct: 144 LGDRV 148
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 46.5 bits (111), Expect = 2e-05
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
AL +LKPG+TVLD+G+G G+ V P GKV +D ++ ++ N RK
Sbjct: 71 ALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK 124
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 44.4 bits (105), Expect = 3e-05
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
LK G VLD+G G+GY L + P +V +D E + +KEN +K
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKL 51
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 44.9 bits (107), Expect = 5e-05
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640
LL ++PGD VLDVG G G A L V P G+V +D E ++ +KE
Sbjct: 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE 62
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 44.2 bits (105), Expect = 5e-05
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
+ L+ +PGD + D+G G+G + + P G+V +++ E + + N +
Sbjct: 28 SKLRPRPGDRLWDIGAGTG-SITIEWALAGPSGRVIAIERDEEALELIERNAAR 80
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 43.3 bits (103), Expect = 1e-04
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 589 EPA--------LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640
EPA K GD VL+VGTGSG A + KV +D Y V +K
Sbjct: 7 EPAEDSFLLAENAVDKKGDRVLEVGTGSGIVAI---VAAKNGKKVVGVDINPYAVECAKC 63
Query: 641 NIRKNH 646
N + N+
Sbjct: 64 NAKLNN 69
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 43.6 bits (104), Expect = 1e-04
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 585 ASSLEPALLKL-KPGDTVLDVGTGSG---YTAACLGYMVRPHGKVYSLDHMEYLVNFSKE 640
LE AL KL PG TVLDVG GSG AA LG KV ++D V ++E
Sbjct: 107 RLCLE-ALEKLVLPGKTVLDVGCGSGILAIAAAKLG-----AKKVLAVDIDPQAVEAARE 160
Query: 641 NIRKNHAHL 649
N N L
Sbjct: 161 NAELNGVEL 169
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 43.5 bits (103), Expect = 1e-04
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L +L +L++GT GY+A + + G++ +++ E ++EN+ +
Sbjct: 54 LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE 106
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 42.9 bits (101), Expect = 2e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
L+L+ GD +LD+G G+G +V GKVY++D E +N ++ N K
Sbjct: 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 40.8 bits (96), Expect = 3e-04
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAH-- 648
+ L+L+PGD + D+G G+G +V P+G+VY+++ ++ + N+R+
Sbjct: 13 SKLRLRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDLIERNLRRFGVSNI 71
Query: 649 -LLDEGVVNIMRTLPPQQDA 667
+++ L P DA
Sbjct: 72 VIVEGDAPEAPEDLLPDPDA 91
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 41.6 bits (98), Expect = 8e-04
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 588 LEPALLKLKPGD-TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
+E AL L D +LD+GTGSG A L P +V ++D + ++EN +N
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALAKE-GPDAEVIAVDISPDALALARENAERN 157
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 41.2 bits (97), Expect = 0.001
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 7/37 (18%)
Query: 586 SSLEPAL-------LKLKPGDTVLDVGTGSGYTAACL 615
SS +P+L L ++ G VL++GTG+GY+AA L
Sbjct: 89 SSTQPSLVARMLEALDVEDGHRVLEIGTGTGYSAALL 125
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 39.2 bits (92), Expect = 0.003
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
K G+ V+D+ G G + + + +VY+++ V + KENI+ N EGV+
Sbjct: 99 KEGEVVVDMFAGIGPFSIPIAKHSKA-KRVYAVELNPEAVKYLKENIKLNKV----EGVI 153
Query: 656 NIM----RTLPPQQDASRV 670
+ + R + + A RV
Sbjct: 154 SPILGDVRDVILEGVADRV 172
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 597 PGDTVLDVGTGSGYTAACLGYMVR--PHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654
PG VLD+G G+G A + R P +V +D ++ E R+N L +
Sbjct: 1 PGARVLDIGCGTGSLAI---ELARLFPGARVTGVDLSPEML----ELARENAKLALGPRI 53
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 38.7 bits (90), Expect = 0.006
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYS 627
LKPG TV+D+ G GY V P GKVY+
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYA 78
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 38.7 bits (90), Expect = 0.008
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 550 IKVDRKDFCPPNRNPYHDYSVML-------ENCSYLNSPSFIASSLEPALLKLKPGDTVL 602
++V R++F + + Y ++ E S + PS +A +E + L G VL
Sbjct: 28 LEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFME--WVGLDKGMRVL 85
Query: 603 DVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
++G G+GY AA + +V G V S+++ + +K N+R+
Sbjct: 86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR 127
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 37.8 bits (89), Expect = 0.012
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 589 EPALLKLKPGD-TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHA 647
E AL +LK G VLD+GTGSG A L RP +V ++D + +++N +
Sbjct: 78 EAALERLKKGPLRVLDLGTGSGAIALALAKE-RPDARVTAVDISPEALAVARKNAARLGL 136
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 36.8 bits (86), Expect = 0.014
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
L G VLD+G G G A L P +V +D + ++ N+ N
Sbjct: 27 LPKPLGGKVLDLGCGYGVLGAALAKRS-PDLEVTMVDINARALESARANLAAN 78
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 37.1 bits (86), Expect = 0.022
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
+L+LKPG V + GTGSG + + V P G +Y+ + E + ++E R++
Sbjct: 97 MLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREH 150
>gnl|CDD|131428 TIGR02375, pseudoazurin, pseudoazurin. Pseudoazurin, also called
cupredoxin, is a small, blue periplasmic protein with a
single bound copper atom. Pseudoazurin is related
plastocyanins. Several examples of pseudoazurin are
encoded by a neighboring gene for, or have been shown to
transfer electrons to, copper-containing nitrite
reductases (TIGR02376) of the same species [Energy
metabolism, Electron transport].
Length = 116
Score = 35.1 bits (81), Expect = 0.027
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 578 LNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHG--KVYSLDHMEYLV 635
LN + A EPA ++ PGDTV V T G+ + M+ P G S + EY V
Sbjct: 2 LNKGAEGAMVFEPAYIRAAPGDTVTFVPTDKGHNVETIKGMI-PEGAEAFKSKINEEYTV 60
Query: 636 NFSKE 640
+KE
Sbjct: 61 TLTKE 65
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 36.5 bits (85), Expect = 0.038
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 33/127 (25%)
Query: 564 PYHDYSVMLENCSYLNSPSFIASSLEPA----------LLKLKPGDTVLDVGTGSGYTAA 613
P YS C+Y P +LE A L LKPG T+LD+G G G A
Sbjct: 37 PSMTYS-----CAYFEDP---DMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAI 88
Query: 614 CLGYMVRPHG-KVYSLDHMEYLVNFSKENIRK----NHAHLLDEGVVNIMRTLPPQQDAS 668
Y +G V + E + ++++ I ++ + + R D
Sbjct: 89 ---YAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD----YRDFEEPFD-- 139
Query: 669 RVNISVE 675
R+ +SV
Sbjct: 140 RI-VSVG 145
>gnl|CDD|117118 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III C terminal. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 90
Score = 34.0 bits (79), Expect = 0.038
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 594 KLKPGDTVLDVGTGSGYTAACL 615
KLKPGD VL VG G+G T
Sbjct: 65 KLKPGDLVLLVGFGAGLTWGAA 86
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family
consist of Cyclopropane-fatty-acyl-phospholipid synthase
or CFA synthase EC:2.1.1.79 this enzyme catalyze the
reaction: S-adenosyl-L-methionine + phospholipid
olefinic fatty acid <=> S-adenosyl-L-homocysteine +
phospholipid cyclopropane fatty acid.
Length = 273
Score = 36.1 bits (84), Expect = 0.046
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 593 LKLKPGDTVLDVGTGSGYTA 612
L LKPG T+LD+G G G
Sbjct: 58 LGLKPGMTLLDIGCGWGGLM 77
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 33.6 bits (77), Expect = 0.088
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 598 GDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNI 657
GD VLD G GSG P +V ++ ++ + VV
Sbjct: 1 GDRVLDPGAGSGAFLLAA-ARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 658 MRTLPPQQDAS 668
R L D S
Sbjct: 60 ARELLELPDGS 70
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 33.2 bits (76), Expect = 0.10
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 600 TVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGV 654
VLD+G G+G A L P +V +D + RK A LL + V
Sbjct: 1 RVLDLGCGTGALA--LALASGPGARVTGVDISPVALEL----ARKAAAALLADNV 49
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 33.6 bits (77), Expect = 0.14
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 581 PSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACL 615
F+A L L +LKPG VLD+G G+G L
Sbjct: 6 ERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLL 40
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 34.2 bits (79), Expect = 0.17
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRK 644
+LL +KPGD VLDV G+G A L V G+V LD E ++ ++E ++K
Sbjct: 45 SLLGIKPGDKVLDVACGTGDMALLLAKSV-GTGEVVGLDISESMLEVAREKLKK 97
>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 33.9 bits (78), Expect = 0.23
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAAC 614
L+K+K G+ VLD TG GYTA
Sbjct: 128 ELVKVKRGERVLDTCTGLGYTAIE 151
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 33.6 bits (78), Expect = 0.26
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
L ++PGD VLD+ G+G A L V G+V LD
Sbjct: 45 KWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLD 83
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 33.7 bits (74), Expect = 0.26
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 563 NPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPH 622
Y + +L+ L + L L G VLD+G G+G A L +
Sbjct: 14 ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLAL-LARLGGRG 72
Query: 623 GKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVVNIMRTLPPQQDASRVNI 672
V +D ++ ++ L+D V + + + P +D++ ++
Sbjct: 73 AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDL 122
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 33.3 bits (77), Expect = 0.26
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 586 SSLEPALLK------LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDH----MEYLV 635
S L A+LK +KPG VL +G SG T + + +V P G VY+++ L+
Sbjct: 56 SKLAAAILKGLDNIPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELI 115
Query: 636 NFSKENIRKN 645
N +K+ R N
Sbjct: 116 NMAKK--RPN 123
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 33.6 bits (77), Expect = 0.28
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
K G+ LDV G+G L GKV LD ++ +++ +EG
Sbjct: 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLD-------INENMLKEGEKKAKEEGKY 98
Query: 656 NI 657
NI
Sbjct: 99 NI 100
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 33.7 bits (78), Expect = 0.30
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVR 620
+ P L LK G TVLDVG G+GY +M R
Sbjct: 114 VLPHLSPLK-GRTVLDVGCGNGY------HMWR 139
>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698).
This family contains many hypothetical proteins. It also
includes two putative methyltransferase proteins.
Length = 315
Score = 33.5 bits (77), Expect = 0.35
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 27/123 (21%)
Query: 542 TKELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSFIASSLEPALLKLKPGDTV 601
K+L L+ + P + P+H + V + + + + + + P L LK G T+
Sbjct: 69 QKKLEQLL-----RALMPWRKGPFHLHGVHI-DTEWRSD--WKWDRVLPHLSPLK-GRTI 119
Query: 602 LDVGTGSGYTAACLGYMVRPHGK----VYSLDHME-YLVNFSKENIRK-----NHAHLLD 651
LDVG G+GY +M R G+ V +D E +L F E +RK AHLL
Sbjct: 120 LDVGCGNGY------HMWRMLGEGAALVVGIDPSELFLCQF--EAVRKLLGNDQRAHLLP 171
Query: 652 EGV 654
G+
Sbjct: 172 LGI 174
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 33.0 bits (76), Expect = 0.48
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNH 646
L G VLD+G G G L P K+ +D V +++N+ N
Sbjct: 154 LPPDLGGKVLDLGCGYGVLGLVLAK-KSPQAKLTLVDVNARAVESARKNLAANG 206
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 33.2 bits (77), Expect = 0.49
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 35/142 (24%)
Query: 543 KELRDLMIKVDRKDFCPPNRNPYHDYSVMLENCSYLNSPSF---------IASSLEPALL 593
++L + +V+ P ++++E + + F +S L L
Sbjct: 195 EKLEEEGYEVEESLLSP--------EALVIEKGNIAGTDLFKDGLITIQDESSMLVAPAL 246
Query: 594 KLKPGDTVLDV----GTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHL 649
K GDTVLD G G T + + GKV +LD E+ + +EN ++
Sbjct: 247 DPKGGDTVLDACAAPG---GKTTHIAELL-KNTGKVVALDIHEHKLKLIEENAKRLG--- 299
Query: 650 LDEGVVNIMRTLPPQQDASRVN 671
+ + T DA +V+
Sbjct: 300 -----LTNIETK--ALDARKVH 314
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 32.1 bits (73), Expect = 0.65
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643
+ ++ G + LDV G+ + L V P G V LD E +++ ++ ++
Sbjct: 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK 91
>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase;
Provisional.
Length = 383
Score = 32.5 bits (75), Expect = 0.83
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVRPHG 623
L+LKPG VLD+G G G A Y +G
Sbjct: 163 LQLKPGMRVLDIGCGWGGLAR---YAAEHYG 190
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 31.7 bits (73), Expect = 1.0
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 594 KLKPGDTVLDVGTGSGYT-AACL 615
KLK GD VL +G G+G T A L
Sbjct: 297 KLKKGDLVLLLGFGAGLTWGAAL 319
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain [Protein fate, Protein modification
and repair].
Length = 284
Score = 31.6 bits (72), Expect = 1.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 597 PGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
P +LD+GTGSG A L Y P+ +V ++D + ++EN KN
Sbjct: 114 PILHILDLGTGSGCIALALAY-EFPNAEVIAVDISPDALAVAEENAEKN 161
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 31.7 bits (73), Expect = 1.3
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 591 ALLKLKPGDTVLDVGTGSGYTAACLGYMV---RPHGKVYSLDHMEYLVNFSKENIRKNHA 647
L LK VLD+GTGSG + + RP +V ++D + ++ N +
Sbjct: 102 EALLLKEPLRVLDLGTGSG----AIALALAKERPDAEVTAVDISPEALAVARRNAKHGLG 157
Query: 648 H 648
Sbjct: 158 A 158
>gnl|CDD|226033 COG3502, COG3502, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 115
Score = 30.1 bits (68), Expect = 1.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 446 LKWHPSDSGDDAIHYYHPTPLHQVLQE 472
L++ PS G H Y P PL V
Sbjct: 72 LRYEPSRGGALFPHLYGPLPLDAVTWV 98
>gnl|CDD|220096 pfam09052, SipA, Salmonella invasion protein A. Salmonella
invasion protein A is an actin-binding protein that
contributes to host cytoskeletal rearrangements by
stimulating actin polymerisation and counteracting
F-actin destabilising proteins. Members of this family
possess an all-helical fold consisting of eight
alpha-helices arranged so that six long, amphipathic
helices form a compact fold that surrounds a final,
predominantly hydrophobic helix in the middle of the
molecule.
Length = 674
Score = 31.2 bits (70), Expect = 2.0
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 362 PGGNEKKSKSTSCKV-INHQAKDECLPQKGDLVRSDSSNESSQEMVEENQRPNSELKSQN 420
PGGN K S+ IN + + R D+ ++ + + NSE +Q+
Sbjct: 288 PGGNGKTSQPVEIHYHINIHNDNRSYDNRVFDNRGDTYLGGARRHYDNSYHENSENDAQS 347
Query: 421 ENIAIVDSGRDCTSLEPLSVQEVSH 445
D R+ SL +
Sbjct: 348 PTSQTNDLSRNGNSLLSPPASPAAG 372
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 30.9 bits (70), Expect = 2.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 595 LKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLD 629
+KPG VL +G SG T + + +V P G VY+++
Sbjct: 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 30.8 bits (70), Expect = 2.3
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 585 ASSLEPALLKLKPGDTVLDV--GTGSGYTAACLGYMVRPHGKVYSLD 629
AS L +L KPG+ VLD+ G G T M V ++D
Sbjct: 144 ASQLPALVLDPKPGERVLDLCAAPG-GKTTHLAELMENEGAIVVAVD 189
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 30.3 bits (69), Expect = 2.8
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 576 SYLNSPSFIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPH 622
++L +P I ++ L+ DTVL++G G G L +
Sbjct: 10 NFLTNPKVINRIVD--KANLQESDTVLEIGPGKGALTTELAKRAKQV 54
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 30.4 bits (69), Expect = 2.8
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKNHAHLLDEGVV 655
K G+TVLD+ G G + + + KVY++D V + KENIR N EG V
Sbjct: 187 KEGETVLDMFAGVGPFS--IPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV----EGRV 240
Query: 656 NIM----RTLPPQQ-DASRVNI 672
+ R + P+ A R+ +
Sbjct: 241 EPILGDAREVAPELGVADRIIM 262
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 29.5 bits (67), Expect = 4.0
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 593 LKLKPGDTVLDVG--TGSGYTAACLGYMVRPHGKVYSLD--HMEY--LVNFSKENIRK-- 644
LK G TVLD+G G G++ L GKV ++D ME V F + +I
Sbjct: 18 LKPGKGKTVLDLGAAPG-GFSQVLLERG--GAGKVVAVDLGPMEPIQGVYFLRGDITDPE 74
Query: 645 NHAHLLDE 652
L +
Sbjct: 75 TLEKLREL 82
>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases. Formaldehyde
dehydrogenase (FDH) is a member of the
zinc-dependent/medium chain alcohol dehydrogenase
family. Formaldehyde dehydrogenase (aka ADH3) may be
the ancestral form of alcohol dehydrogenase, which
evolved to detoxify formaldehyde. This CD contains
glutathione dependant FDH, glutathione independent FDH,
and related alcohol dehydrogenases. FDH converts
formaldehyde and NAD(P) to formate and NAD(P)H. The
initial step in this process the spontaneous formation
of a S-(hydroxymethyl)glutathione adduct from
formaldehyde and glutathione, followed by FDH-mediated
oxidation (and detoxification) of the adduct to
S-formylglutathione. Unlike typical FDH, Pseudomonas
putida aldehyde-dismutating FDH (PFDH) is
glutathione-independent. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 347
Score = 29.9 bits (68), Expect = 4.1
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKEN 641
KPG TV +G G A G + ++ ++D ++ +KE
Sbjct: 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA 211
>gnl|CDD|238154 cd00250, CAS_like, Clavaminic acid synthetase (CAS) -like; CAS is
a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase
carrying out three reactions in the biosynthesis of
clavulanic acid, an inhibitor of class A serine
beta-lactamases. In general, Fe(II)-2OG oxygenases
catalyze a hydroxylation reaction, which leads to the
incorporation of an oxygen atom from dioxygen into a
hydroxyl group and conversion of 2OG to succinate and
CO2.
Length = 262
Score = 29.7 bits (67), Expect = 4.3
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 435 LEPLSVQEVSHLKWHPSDSGDDAIHYYHPTPLHQVLQENERGVILQYD 482
E LS V S Y P VL+ + +L+Y+
Sbjct: 146 FELLSRVPVR---HAYPGSSGTMFSSYQLAP---VLELDPEDPVLRYN 187
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 28.4 bits (64), Expect = 4.3
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 602 LDVGTGSGYTAACLGYMVRPHG--KVYSLDHME--YLVNFSKENIRKNHAHLLDEGVVNI 657
+++G SG + L ++ +G ++YS+D ++ + LL +
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGANLRKAGLADRVRLLRGDSLEA 60
Query: 658 MRTLPPQQ 665
+ LP
Sbjct: 61 LARLPDGS 68
>gnl|CDD|223931 COG0863, COG0863, DNA modification methylase [DNA replication,
recombination, and repair].
Length = 302
Score = 29.9 bits (67), Expect = 4.4
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 592 LLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIRKN 645
PGD VLD GSG T + R + ++ V + + +++
Sbjct: 217 RDYSFPGDIVLDPFAGSGTTGIAAKNLGR---RFIGIEINPEYVEVALKRLQEG 267
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 143
Score = 29.1 bits (66), Expect = 4.5
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 583 FIASSLEPALLKLKPGDTVLDVGTGSGYTAACLGY---MVRPHGKVYSLDHMEYLV 635
F+ ++ +L TV+D G G GY L Y + +V +D LV
Sbjct: 12 FVEPLIK-EVLDKTGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELV 66
>gnl|CDD|235872 PRK06840, PRK06840, hypothetical protein; Validated.
Length = 339
Score = 29.6 bits (67), Expect = 5.4
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 587 SLEPALL--KLKPGDTVLDVGTGSGYTAA 613
SL AL KLK GD V+ V G+GYT A
Sbjct: 301 SLHLALEQGKLKDGDLVVLVSAGTGYTWA 329
>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase. The
gene hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. This
model represents an archaeal and eukaryotic protein
family that lacks an N-terminal domain found in HemK and
its eubacterial homologs. It is found in a single copy
in the first six completed archaeal and eukaryotic
genomes [Unknown function, Enzymes of unknown
specificity].
Length = 179
Score = 29.1 bits (65), Expect = 6.0
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 588 LEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGK---VYSLDHMEYLVNFSKENIRK 644
LE L +LKP D VL++G G+G A +R GK + + D + V +EN +
Sbjct: 11 LEANLRELKP-DDVLEIGAGTGLVA------IRLKGKGKCILTTDINPFAVKELRENAKL 63
Query: 645 NHAHL 649
N+ L
Sbjct: 64 NNVGL 68
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 29.7 bits (67), Expect = 6.2
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 591 ALLKLKPGDTVLDVGTGSG 609
L LKPG VLDVG G G
Sbjct: 260 DKLDLKPGQKVLDVGCGIG 278
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 29.1 bits (65), Expect = 6.4
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 596 KPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENI 642
K GD VLD+ GSG A L V GKV LD FS E +
Sbjct: 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLD-------FSSEQL 111
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 29.4 bits (66), Expect = 6.7
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 584 IASSLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNFSKENIR 643
+S + P L+ + + VLD+ G + +++ G + + + SK +
Sbjct: 58 ASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANE-------ISKSRTK 110
Query: 644 KNHAHLLDEGVVNI 657
+++ GV+N
Sbjct: 111 ALISNINRMGVLNT 124
>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 28.8 bits (65), Expect = 6.8
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 587 SLEPALLKLKPGDTVLDVGTGSGYTAACLGYMVRPHGKVYSLDHMEYLVNF 637
SL VLD+G+G+G+ L + P KV L+ + + F
Sbjct: 57 SLVLLPYLDGKAKRVLDIGSGAGFPGIPLA-IAFPDLKVTLLESLGKKIAF 106
>gnl|CDD|237245 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 325
Score = 29.4 bits (67), Expect = 7.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 594 KLKPGDTVLDVGTGSGYTAACL 615
K+KPGDT+L G G+G T A L
Sbjct: 299 KIKPGDTLLLYGFGAGLTWAAL 320
>gnl|CDD|182031 PRK09694, PRK09694, helicase Cas3; Provisional.
Length = 878
Score = 29.8 bits (67), Expect = 7.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 593 LKLKPGDTVLDVGTGSGYTAACLGYMVR 620
L L+PG T+++ TGSG T A L Y R
Sbjct: 297 LPLQPGLTIIEAPTGSGKTEAALAYAWR 324
>gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 307
Score = 29.0 bits (66), Expect = 9.6
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 582 SFIA----SSLEPALLKLKPGDTVLDVGTGSGYTAACLG 616
S IA P L+ P +LD+ TGSG C+
Sbjct: 115 SPIAELIEDGFAP-WLEDPPVTRILDLCTGSG----CIA 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,414,404
Number of extensions: 3203329
Number of successful extensions: 2705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2688
Number of HSP's successfully gapped: 86
Length of query: 687
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 583
Effective length of database: 6,324,786
Effective search space: 3687350238
Effective search space used: 3687350238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.8 bits)